pymodaq 4.2.3__py3-none-any.whl → 5.0.0__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Potentially problematic release.
This version of pymodaq might be problematic. Click here for more details.
- pymodaq/__init__.py +30 -23
- pymodaq/control_modules/daq_move.py +27 -14
- pymodaq/control_modules/daq_move_ui.py +33 -16
- pymodaq/control_modules/daq_viewer.py +38 -28
- pymodaq/control_modules/daq_viewer_ui.py +6 -6
- pymodaq/control_modules/mocks.py +1 -1
- pymodaq/control_modules/move_utility_classes.py +19 -10
- pymodaq/control_modules/utils.py +18 -12
- pymodaq/control_modules/viewer_utility_classes.py +13 -4
- pymodaq/dashboard.py +166 -118
- pymodaq/examples/custom_app.py +13 -16
- pymodaq/examples/custom_viewer.py +7 -7
- pymodaq/examples/function_plotter.py +13 -12
- pymodaq/examples/parameter_ex.py +50 -25
- pymodaq/examples/tcp_client.py +1 -1
- pymodaq/extensions/__init__.py +1 -1
- pymodaq/extensions/bayesian/bayesian_optimisation.py +15 -12
- pymodaq/extensions/bayesian/utils.py +10 -10
- pymodaq/extensions/console.py +10 -13
- pymodaq/extensions/{daq_logger.py → daq_logger/daq_logger.py} +36 -56
- pymodaq/{utils/db/db_logger → extensions/daq_logger/db}/db_logger.py +16 -15
- pymodaq/{utils/db/db_logger → extensions/daq_logger/db}/db_logger_models.py +2 -0
- pymodaq/{utils/h5modules → extensions/daq_logger}/h5logging.py +7 -8
- pymodaq/extensions/daq_scan.py +153 -247
- pymodaq/extensions/daq_scan_ui.py +11 -9
- pymodaq/extensions/h5browser.py +8 -8
- pymodaq/extensions/pid/__init__.py +6 -3
- pymodaq/extensions/pid/daq_move_PID.py +4 -2
- pymodaq/extensions/pid/pid_controller.py +15 -12
- pymodaq/extensions/pid/utils.py +10 -5
- pymodaq/extensions/utils.py +5 -3
- pymodaq/post_treatment/load_and_plot.py +10 -7
- pymodaq/resources/preset_default.xml +1 -1
- pymodaq/utils/array_manipulation.py +4 -384
- pymodaq/utils/calibration_camera.py +12 -9
- pymodaq/utils/chrono_timer.py +7 -5
- pymodaq/utils/config.py +3 -450
- pymodaq/utils/daq_utils.py +6 -664
- pymodaq/utils/data.py +9 -2774
- pymodaq/utils/exceptions.py +0 -4
- pymodaq/utils/gui_utils/__init__.py +8 -8
- pymodaq/utils/gui_utils/loader_utils.py +38 -0
- pymodaq/utils/gui_utils/utils.py +6 -138
- pymodaq/utils/h5modules/__init__.py +0 -4
- pymodaq/utils/h5modules/module_saving.py +15 -8
- pymodaq/utils/leco/__init__.py +2 -2
- pymodaq/utils/leco/daq_move_LECODirector.py +2 -2
- pymodaq/utils/leco/daq_xDviewer_LECODirector.py +2 -2
- pymodaq/utils/leco/director_utils.py +2 -2
- pymodaq/utils/leco/leco_director.py +3 -3
- pymodaq/utils/leco/pymodaq_listener.py +2 -2
- pymodaq/utils/leco/utils.py +1 -1
- pymodaq/utils/logger.py +4 -76
- pymodaq/utils/managers/batchscan_manager.py +16 -19
- pymodaq/utils/managers/modules_manager.py +10 -7
- pymodaq/utils/managers/overshoot_manager.py +3 -5
- pymodaq/utils/managers/preset_manager.py +37 -15
- pymodaq/utils/managers/preset_manager_utils.py +11 -9
- pymodaq/utils/managers/remote_manager.py +12 -10
- pymodaq/utils/math_utils.py +4 -572
- pymodaq/utils/parameter/__init__.py +4 -11
- pymodaq/utils/parameter/utils.py +4 -299
- pymodaq/utils/scanner/scan_config.py +1 -1
- pymodaq/utils/scanner/scan_factory.py +16 -12
- pymodaq/utils/{plotting → scanner}/scan_selector.py +19 -20
- pymodaq/utils/scanner/scanner.py +10 -8
- pymodaq/utils/scanner/scanners/_1d_scanners.py +8 -5
- pymodaq/utils/scanner/scanners/_2d_scanners.py +5 -5
- pymodaq/utils/scanner/scanners/sequential.py +8 -8
- pymodaq/utils/scanner/scanners/tabular.py +9 -9
- pymodaq/utils/scanner/utils.py +6 -4
- pymodaq/utils/svg/svg_viewer2D.py +3 -4
- pymodaq/utils/tcp_ip/serializer.py +64 -16
- pymodaq/utils/tcp_ip/tcp_server_client.py +10 -8
- {pymodaq-4.2.3.dist-info → pymodaq-5.0.0.dist-info}/METADATA +5 -3
- pymodaq-5.0.0.dist-info/RECORD +123 -0
- {pymodaq-4.2.3.dist-info → pymodaq-5.0.0.dist-info}/WHEEL +1 -1
- pymodaq/post_treatment/process_to_scalar.py +0 -263
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/1d.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/2d.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/3d.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Add2.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Add_Step.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Approve.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Approve_All.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Browse_Dir_Path.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Calculator.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/ChnGroup.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/ChnNum.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/ChnText.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/ChnTime.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/ChnWave.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Close3.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/CollapseAll.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/CollapseAll_32.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/ColorPicker.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Contract.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Create.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/DeleteLayer.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/EditOpen.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/EditRedo.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/EditUndo.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Ellipse.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/EllipseFilled.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Error.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/ErrorMessage.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Error_16.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Exit.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Expand.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/ExpandAll.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/ExpandAll_32.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/FFT.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/HLM.ico +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Help.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Help_32.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Histogram.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/LUT_LookUpTable.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/MagnifyingGlass.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/MagnifyingGlass_24.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Marker.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Math.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/MeasurementStudio_32.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Move.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/MoveDown.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/MoveUp.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Multiply.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/NewFile.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/NewLayer.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/New_File.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/New_Folder.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Open.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Open_1D.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Open_2D.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Open_File.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Open_File_32.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Open_sim.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Options.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Oscilloscope.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Oscilloscope_16.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Pass.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/RGB.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Rectangle.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/RectangleFilled.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Redo.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Refresh.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Refresh2.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Refresh_32.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Region.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Rendezvous.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/SELECT.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Save.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/SaveAll.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/SaveAll_32.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/SaveAs.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/SaveAs_32.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Save_24.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Save_32.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Search.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/SelectPolygon.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Select_24.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Settings.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Snap&Save.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Snapshot.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Snapshot2.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Snapshot2_16.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Snapshot2_32.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Spreadsheet.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Statistics.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Statistics2.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Status.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Subtract.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Vision.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Volts.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Wait2.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Zoom_1_1.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Zoom_in.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Zoom_out.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/Zoom_to_Selection.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/abort.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/advanced2.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/autoscale.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/b_icon.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/back.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/bg_icon.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/camera.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/camera_snap.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/cartesian.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/clear2.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/clear_ROI.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/close2.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/cluster2.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/color.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/color2.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/continuous.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/data.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/delay.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/download.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/download2.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/error2.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/ethernet.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/exit2.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/fan.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/filter2.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/g_icon.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/gear2.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/go_to.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/go_to_1.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/go_to_2.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/grab.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/graph.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/greenLight2.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/greenLight2_32.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/green_light.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/grey_icon.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/greyscale.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/help1.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/help1_32.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/home2.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/information2.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/ini.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/integrator.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/joystick.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/light_green.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/light_green_16.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/light_red.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/light_red_16.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/light_yellow.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/light_yellow_16.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/limiter.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/load_ROI.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/meshPlot.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/meter.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/meter2.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/meter_32.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/move_contour.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/move_straight_line.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/movie.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/multi_point.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/multiplexer.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/new.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/openArrow.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/openTree.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/oscilloscope2.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/oscilloscope3.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/overlay.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/pass2.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/pass2_16.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/pass_32.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/pause.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/permute.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/phase.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/play.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/polar.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/pole_zero.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/powerMeter.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/powerSwitch.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/powerSwitch_16.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/print2.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/print2_32.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/properties.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/r_icon.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/radiocontrolbutton.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/read2.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/red_light.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/remove.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/reset.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/rgb_icon.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/robot.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/rotation2.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/run2.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/run_all.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/saturation.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/saveTree.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/save_ROI.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/scale_horizontally.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/scale_vertically.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/search2.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/select2.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/select_all.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/select_all2.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/select_none.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/sequence.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/sequence2.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/snap.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/sort_ascend.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/spectrumAnalyzer.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/start.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/status_cancelled.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/stop.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/stop2.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/stop3.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/stop_all.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/sum.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/surfacePlot.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/tree.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/updateTree.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/utility2.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/utility_small.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/vector.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/verify.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/video.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/wait.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/waterfallPlot.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/watershed.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/yellow_light.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/zip_file.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/zoomAuto.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/Icon_Library/zoomReset.png +0 -0
- pymodaq/resources/QtDesigner_Ressources/QtDesigner_ressources.bat +0 -2
- pymodaq/resources/QtDesigner_Ressources/QtDesigner_ressources.qrc +0 -234
- pymodaq/resources/QtDesigner_Ressources/QtDesigner_ressources_rc.py +0 -127150
- pymodaq/resources/QtDesigner_Ressources/icons.svg +0 -142
- pymodaq/resources/VERSION +0 -1
- pymodaq/resources/config_template.toml +0 -90
- pymodaq/resources/triangulation_data.npy +0 -0
- pymodaq/utils/abstract/__init__.py +0 -48
- pymodaq/utils/db/__init__.py +0 -0
- pymodaq/utils/db/db_logger/__init__.py +0 -0
- pymodaq/utils/enums.py +0 -76
- pymodaq/utils/factory.py +0 -82
- pymodaq/utils/gui_utils/custom_app.py +0 -133
- pymodaq/utils/gui_utils/dock.py +0 -107
- pymodaq/utils/gui_utils/file_io.py +0 -93
- pymodaq/utils/gui_utils/layout.py +0 -34
- pymodaq/utils/gui_utils/list_picker.py +0 -38
- pymodaq/utils/gui_utils/widgets/__init__.py +0 -5
- pymodaq/utils/gui_utils/widgets/label.py +0 -24
- pymodaq/utils/gui_utils/widgets/lcd.py +0 -111
- pymodaq/utils/gui_utils/widgets/push.py +0 -149
- pymodaq/utils/gui_utils/widgets/qled.py +0 -62
- pymodaq/utils/gui_utils/widgets/spinbox.py +0 -24
- pymodaq/utils/gui_utils/widgets/table.py +0 -263
- pymodaq/utils/gui_utils/widgets/tree_layout.py +0 -188
- pymodaq/utils/gui_utils/widgets/tree_toml.py +0 -102
- pymodaq/utils/h5modules/backends.py +0 -1022
- pymodaq/utils/h5modules/browsing.py +0 -625
- pymodaq/utils/h5modules/data_saving.py +0 -1101
- pymodaq/utils/h5modules/exporter.py +0 -119
- pymodaq/utils/h5modules/exporters/__init__.py +0 -0
- pymodaq/utils/h5modules/exporters/base.py +0 -111
- pymodaq/utils/h5modules/exporters/flimj.py +0 -63
- pymodaq/utils/h5modules/exporters/hyperspy.py +0 -143
- pymodaq/utils/h5modules/saving.py +0 -866
- pymodaq/utils/h5modules/utils.py +0 -115
- pymodaq/utils/managers/action_manager.py +0 -489
- pymodaq/utils/managers/parameter_manager.py +0 -282
- pymodaq/utils/managers/roi_manager.py +0 -726
- pymodaq/utils/messenger.py +0 -66
- pymodaq/utils/parameter/ioxml.py +0 -542
- pymodaq/utils/parameter/pymodaq_ptypes/__init__.py +0 -38
- pymodaq/utils/parameter/pymodaq_ptypes/bool.py +0 -31
- pymodaq/utils/parameter/pymodaq_ptypes/date.py +0 -126
- pymodaq/utils/parameter/pymodaq_ptypes/filedir.py +0 -143
- pymodaq/utils/parameter/pymodaq_ptypes/itemselect.py +0 -265
- pymodaq/utils/parameter/pymodaq_ptypes/led.py +0 -44
- pymodaq/utils/parameter/pymodaq_ptypes/list.py +0 -150
- pymodaq/utils/parameter/pymodaq_ptypes/numeric.py +0 -18
- pymodaq/utils/parameter/pymodaq_ptypes/pixmap.py +0 -175
- pymodaq/utils/parameter/pymodaq_ptypes/slide.py +0 -145
- pymodaq/utils/parameter/pymodaq_ptypes/table.py +0 -135
- pymodaq/utils/parameter/pymodaq_ptypes/tableview.py +0 -149
- pymodaq/utils/parameter/pymodaq_ptypes/text.py +0 -142
- pymodaq/utils/plotting/__init__.py +0 -0
- pymodaq/utils/plotting/data_viewers/__init__.py +0 -10
- pymodaq/utils/plotting/data_viewers/base.py +0 -286
- pymodaq/utils/plotting/data_viewers/viewer.py +0 -274
- pymodaq/utils/plotting/data_viewers/viewer0D.py +0 -298
- pymodaq/utils/plotting/data_viewers/viewer1D.py +0 -820
- pymodaq/utils/plotting/data_viewers/viewer1Dbasic.py +0 -231
- pymodaq/utils/plotting/data_viewers/viewer2D.py +0 -1118
- pymodaq/utils/plotting/data_viewers/viewer2D_basic.py +0 -146
- pymodaq/utils/plotting/data_viewers/viewerND.py +0 -800
- pymodaq/utils/plotting/gant_chart.py +0 -123
- pymodaq/utils/plotting/image_viewer.py +0 -97
- pymodaq/utils/plotting/items/__init__.py +0 -0
- pymodaq/utils/plotting/items/axis_scaled.py +0 -93
- pymodaq/utils/plotting/items/crosshair.py +0 -94
- pymodaq/utils/plotting/items/image.py +0 -388
- pymodaq/utils/plotting/navigator.py +0 -353
- pymodaq/utils/plotting/plotter/plotter.py +0 -94
- pymodaq/utils/plotting/plotter/plotters/__init__.py +0 -0
- pymodaq/utils/plotting/plotter/plotters/matplotlib_plotters.py +0 -134
- pymodaq/utils/plotting/plotter/plotters/qt_plotters.py +0 -78
- pymodaq/utils/plotting/utils/__init__.py +0 -0
- pymodaq/utils/plotting/utils/axes_viewer.py +0 -88
- pymodaq/utils/plotting/utils/filter.py +0 -585
- pymodaq/utils/plotting/utils/lineout.py +0 -226
- pymodaq/utils/plotting/utils/plot_utils.py +0 -579
- pymodaq/utils/plotting/utils/signalND.py +0 -1347
- pymodaq/utils/plotting/widgets.py +0 -76
- pymodaq/utils/qvariant.py +0 -12
- pymodaq/utils/slicing.py +0 -63
- pymodaq/utils/units.py +0 -216
- pymodaq-4.2.3.dist-info/RECORD +0 -438
- /pymodaq/{post_treatment/daq_analysis → extensions/daq_logger}/__init__.py +0 -0
- /pymodaq/{utils/abstract/logger.py → extensions/daq_logger/abstract.py} +0 -0
- /pymodaq/{resources/QtDesigner_Ressources → extensions/daq_logger/db}/__init__.py +0 -0
- {pymodaq-4.2.3.dist-info → pymodaq-5.0.0.dist-info}/entry_points.txt +0 -0
- {pymodaq-4.2.3.dist-info → pymodaq-5.0.0.dist-info}/licenses/LICENSE +0 -0
|
@@ -1,231 +0,0 @@
|
|
|
1
|
-
from qtpy import QtGui, QtWidgets
|
|
2
|
-
from qtpy.QtCore import Slot, QObject, QThread, Signal, QLocale, QDateTime, QSize
|
|
3
|
-
import sys
|
|
4
|
-
import pyqtgraph as pg
|
|
5
|
-
import numpy as np
|
|
6
|
-
|
|
7
|
-
from pymodaq.utils.logger import set_logger, get_module_name
|
|
8
|
-
from pymodaq.utils import daq_utils as utils
|
|
9
|
-
|
|
10
|
-
logger = set_logger(get_module_name(__file__))
|
|
11
|
-
|
|
12
|
-
|
|
13
|
-
class Viewer1DBasic(QObject):
|
|
14
|
-
"""this plots 1D data on a plotwidget. one linear region to select data, one infinite line to select point
|
|
15
|
-
"""
|
|
16
|
-
roi_region_signal = Signal(tuple)
|
|
17
|
-
roi_line_signal = Signal(float)
|
|
18
|
-
|
|
19
|
-
def __init__(self, parent=None, show_region=False, show_line=False):
|
|
20
|
-
"""
|
|
21
|
-
|
|
22
|
-
Parameters
|
|
23
|
-
----------
|
|
24
|
-
parent
|
|
25
|
-
|
|
26
|
-
Attributes
|
|
27
|
-
----------
|
|
28
|
-
parent: (QWidget)
|
|
29
|
-
roi_region: (pyqtgraph LinerrRegionItem)
|
|
30
|
-
roi_line: (pyqtgraph InfiniteLine graphitem)
|
|
31
|
-
Properties
|
|
32
|
-
----------
|
|
33
|
-
labels: (list of str)
|
|
34
|
-
x_axis: (Axis or dict)
|
|
35
|
-
|
|
36
|
-
"""
|
|
37
|
-
|
|
38
|
-
super().__init__()
|
|
39
|
-
if parent is None:
|
|
40
|
-
parent = QtWidgets.QWidget()
|
|
41
|
-
parent.show()
|
|
42
|
-
|
|
43
|
-
self.parent = parent
|
|
44
|
-
|
|
45
|
-
self.plot_colors = utils.plot_colors
|
|
46
|
-
|
|
47
|
-
self.data_to_export = None
|
|
48
|
-
self.datas = None
|
|
49
|
-
self._x_axis = None
|
|
50
|
-
|
|
51
|
-
self.labels = []
|
|
52
|
-
self.plot_channels = None
|
|
53
|
-
self.legend = None
|
|
54
|
-
self.setup_ui()
|
|
55
|
-
|
|
56
|
-
self.show_roi_region(show_region)
|
|
57
|
-
self.show_roi_line(show_line)
|
|
58
|
-
|
|
59
|
-
def show(self, state=True):
|
|
60
|
-
self.parent.setVisible(state)
|
|
61
|
-
|
|
62
|
-
def setup_ui(self):
|
|
63
|
-
vboxlayout = QtWidgets.QVBoxLayout()
|
|
64
|
-
self.plotwidget = pg.PlotWidget()
|
|
65
|
-
self.parent.setLayout(vboxlayout)
|
|
66
|
-
vboxlayout.addWidget(self.plotwidget)
|
|
67
|
-
vboxlayout.setContentsMargins(0, 0, 0, 0)
|
|
68
|
-
|
|
69
|
-
self.legend = self.plotwidget.addLegend()
|
|
70
|
-
self.roi_region = pg.LinearRegionItem()
|
|
71
|
-
self.roi_line = pg.InfiniteLine(movable=True)
|
|
72
|
-
self.plotwidget.plotItem.addItem(self.roi_region)
|
|
73
|
-
self.plotwidget.plotItem.addItem(self.roi_line)
|
|
74
|
-
self.roi_region.sigRegionChanged.connect(self.update_region)
|
|
75
|
-
self.roi_line.sigPositionChanged.connect(self.update_line)
|
|
76
|
-
|
|
77
|
-
def get_line_position(self):
|
|
78
|
-
return self.roi_line.getXPos()
|
|
79
|
-
|
|
80
|
-
def show_roi_region(self, show=True):
|
|
81
|
-
self.roi_region.setVisible(show)
|
|
82
|
-
|
|
83
|
-
def show_roi_line(self, show=True):
|
|
84
|
-
self.roi_line.setVisible(show)
|
|
85
|
-
|
|
86
|
-
def update_region(self, item):
|
|
87
|
-
self.roi_region_signal.emit(item.getRegion())
|
|
88
|
-
|
|
89
|
-
def update_line(self, item):
|
|
90
|
-
self.roi_line_signal.emit(item.getPos()[0])
|
|
91
|
-
|
|
92
|
-
@property
|
|
93
|
-
def labels(self):
|
|
94
|
-
return self._labels
|
|
95
|
-
|
|
96
|
-
@labels.setter
|
|
97
|
-
def labels(self, labels):
|
|
98
|
-
self._labels = labels
|
|
99
|
-
self.update_labels(labels)
|
|
100
|
-
|
|
101
|
-
def update_labels(self, labels=[]):
|
|
102
|
-
try:
|
|
103
|
-
if self.datas is not None:
|
|
104
|
-
labels_tmp = labels[:]
|
|
105
|
-
if self.labels == labels:
|
|
106
|
-
if self.labels == [] or len(self.labels) < len(self.datas):
|
|
107
|
-
self._labels = ["CH{}".format(ind) for ind in range(len(self.datas))]
|
|
108
|
-
else:
|
|
109
|
-
flag = True
|
|
110
|
-
while flag:
|
|
111
|
-
items = [item[1].text for item in self.legend.items]
|
|
112
|
-
if len(items) == 0:
|
|
113
|
-
flag = False
|
|
114
|
-
else:
|
|
115
|
-
self.legend.removeItem(items[0])
|
|
116
|
-
|
|
117
|
-
if len(labels) < len(self.plot_channels):
|
|
118
|
-
for ind in range(len(labels), len(self.plot_channels)):
|
|
119
|
-
labels_tmp.append('CH{:02d}'.format(ind))
|
|
120
|
-
|
|
121
|
-
if len(labels_tmp) == len(self.plot_channels):
|
|
122
|
-
for ind, channel in enumerate(self.plot_channels):
|
|
123
|
-
self.legend.addItem(channel, labels_tmp[ind])
|
|
124
|
-
|
|
125
|
-
self._labels = labels_tmp
|
|
126
|
-
|
|
127
|
-
except Exception as e:
|
|
128
|
-
logger.exception(str(e))
|
|
129
|
-
|
|
130
|
-
@Slot(list)
|
|
131
|
-
def show_data(self, datas):
|
|
132
|
-
if datas is not None and datas[0] is not None:
|
|
133
|
-
self.datas = datas
|
|
134
|
-
|
|
135
|
-
if self.labels == [] or len(self.labels) != len(datas):
|
|
136
|
-
self.update_labels(self.labels)
|
|
137
|
-
|
|
138
|
-
if self.plot_channels is None: # initialize data and plots
|
|
139
|
-
self.ini_data_plots(len(datas))
|
|
140
|
-
elif len(self.plot_channels) != len(datas):
|
|
141
|
-
self.remove_plots()
|
|
142
|
-
self.ini_data_plots(len(datas))
|
|
143
|
-
|
|
144
|
-
for ind_plot, data in enumerate(datas):
|
|
145
|
-
if self._x_axis is None or len(self._x_axis) != len(data):
|
|
146
|
-
self._x_axis = np.linspace(0, len(data), len(data), endpoint=False)
|
|
147
|
-
|
|
148
|
-
self.plot_channels[ind_plot].setData(x=self.x_axis, y=data)
|
|
149
|
-
|
|
150
|
-
def ini_data_plots(self, Nplots):
|
|
151
|
-
self.plot_channels = []
|
|
152
|
-
|
|
153
|
-
channels = []
|
|
154
|
-
for ind in range(Nplots):
|
|
155
|
-
channel = self.plotwidget.plot()
|
|
156
|
-
channel.setPen(self.plot_colors[ind])
|
|
157
|
-
self.legend.addItem(channel, self._labels[ind])
|
|
158
|
-
channels.append(ind)
|
|
159
|
-
self.plot_channels.append(channel)
|
|
160
|
-
|
|
161
|
-
def remove_plots(self):
|
|
162
|
-
if self.plot_channels is not None:
|
|
163
|
-
for channel in self.plot_channels:
|
|
164
|
-
self.plotwidget.removeItem(channel)
|
|
165
|
-
self.plot_channels = None
|
|
166
|
-
if self.legend is not None:
|
|
167
|
-
items = [item[1].text for item in self.legend.items]
|
|
168
|
-
for item in items:
|
|
169
|
-
self.legend.removeItem(item)
|
|
170
|
-
|
|
171
|
-
def set_axis_label(self, axis_settings=dict(orientation='bottom', label='x axis', units='pxls')):
|
|
172
|
-
axis = self.plotwidget.plotItem.getAxis(axis_settings['orientation'])
|
|
173
|
-
axis.setLabel(text=axis_settings['label'], units=axis_settings['units'])
|
|
174
|
-
|
|
175
|
-
@property
|
|
176
|
-
def x_axis(self):
|
|
177
|
-
return self._x_axis
|
|
178
|
-
|
|
179
|
-
@x_axis.setter
|
|
180
|
-
def x_axis(self, x_axis):
|
|
181
|
-
label = 'Pxls'
|
|
182
|
-
units = ''
|
|
183
|
-
if isinstance(x_axis, dict):
|
|
184
|
-
if 'data' in x_axis:
|
|
185
|
-
xdata = x_axis['data']
|
|
186
|
-
if 'label' in x_axis:
|
|
187
|
-
label = x_axis['label']
|
|
188
|
-
if 'units' in x_axis:
|
|
189
|
-
units = x_axis['units']
|
|
190
|
-
else:
|
|
191
|
-
xdata = x_axis
|
|
192
|
-
self._x_axis = xdata
|
|
193
|
-
self.show_data(self.datas)
|
|
194
|
-
self.set_axis_label(dict(orientation='bottom', label=label, units=units))
|
|
195
|
-
|
|
196
|
-
|
|
197
|
-
if __name__ == '__main__': # pragma: no cover
|
|
198
|
-
app = QtWidgets.QApplication(sys.argv)
|
|
199
|
-
|
|
200
|
-
def print_region(xx):
|
|
201
|
-
print(xx)
|
|
202
|
-
|
|
203
|
-
def print_line(x):
|
|
204
|
-
print(x)
|
|
205
|
-
|
|
206
|
-
Form = QtWidgets.QWidget()
|
|
207
|
-
prog = Viewer1DBasic(Form)
|
|
208
|
-
# prog.show_roi_region()
|
|
209
|
-
prog.show_roi_line()
|
|
210
|
-
prog.roi_region_signal.connect(print_region)
|
|
211
|
-
prog.roi_line_signal.connect(print_line)
|
|
212
|
-
from pymodaq.utils.daq_utils import gauss1D
|
|
213
|
-
|
|
214
|
-
x = np.linspace(0, 200, 201)
|
|
215
|
-
y1 = gauss1D(x, 75, 25)
|
|
216
|
-
y2 = gauss1D(x, 120, 50, 2)
|
|
217
|
-
tau_half = 27
|
|
218
|
-
tau2 = 100
|
|
219
|
-
x0 = 50
|
|
220
|
-
dx = 20
|
|
221
|
-
ydata_expodec = np.zeros((len(x)))
|
|
222
|
-
ydata_expodec[:50] = 1 * gauss1D(x[:50], x0, dx, 2)
|
|
223
|
-
ydata_expodec[50:] = 1 * np.exp(-(x[50:] - x0) / (tau_half / np.log(2))) # +1*np.exp(-(x[50:]-x0)/tau2)
|
|
224
|
-
ydata_expodec += 0.1 * np.random.rand(len(x))
|
|
225
|
-
|
|
226
|
-
prog.show_data([y1, y2, ydata_expodec])
|
|
227
|
-
|
|
228
|
-
Form.show()
|
|
229
|
-
prog.x_axis
|
|
230
|
-
prog.update_labels(labels=['sig0', 'tralala', 'ouhaouh'])
|
|
231
|
-
sys.exit(app.exec_())
|