py2ls 0.1.9.8__py3-none-any.whl → 0.1.10.0__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (12) hide show
  1. py2ls/batman.py +183 -0
  2. py2ls/data/styles/style10.json +213 -0
  3. py2ls/data/styles/style11.json +213 -0
  4. py2ls/data/styles/style12.json +192 -0
  5. py2ls/ich2ls.py +590 -0
  6. py2ls/ips.py +1 -0
  7. py2ls/netfinder.py +5 -2
  8. py2ls/plot.py +260 -72
  9. py2ls/stats.py +1 -3
  10. {py2ls-0.1.9.8.dist-info → py2ls-0.1.10.0.dist-info}/METADATA +1 -1
  11. {py2ls-0.1.9.8.dist-info → py2ls-0.1.10.0.dist-info}/RECORD +12 -7
  12. {py2ls-0.1.9.8.dist-info → py2ls-0.1.10.0.dist-info}/WHEEL +0 -0
py2ls/batman.py ADDED
@@ -0,0 +1,183 @@
1
+ import smtplib
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+ from email.mime.text import MIMEText
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+ from email.mime.multipart import MIMEMultipart
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+ from email.mime.base import MIMEBase
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+ from email import encoders
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+ import schedule
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+ import time
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+ from datetime import datetime
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+ import os
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+
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+
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+ signature_styles = [
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+ "", # none
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+ (
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+ "------------------------------------------------------------------------------------------------\n"
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+ "Jianfeng Liu, PhD\n"
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+ "Institute of Medical Psychology and Behavioural Neurobiology\n"
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+ "University of Tübingen\n"
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+ "Otfried-Müller-Str. 25\n"
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+ "72076 Tübingen\n\n"
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+ ),
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+ f"Pappelweg 8\n72076 Tübingen\n\n",
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+ ]
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+
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+
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+ def email_to(**kwargs):
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+ """
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+ usage:
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+ email_to(who="example@gmail.com",
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+ subject="test",
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+ what="this is the body",
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+ attachments="/Users/test.pdf")
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+ Send an email with optional attachments.
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+
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+ :param who: Recipient email address
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+ :param subject: Email subject
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+ :param what: Email what
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+ :param attachments: List of file paths to attach
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+ """
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+ who, what, subject = None, None, None
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+ attachments = False
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+ pause_sec = False # default 10 seconds pause
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+ signature = signature_styles[0]
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+
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+ # params config
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+ for k, v in kwargs.items():
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+ if any(
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+ [
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+ "who" in k.lower(),
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+ "whe" in k.lower(),
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+ all(["@" in k.lower(), "." in k.lower()]),
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+ ]
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+ ): # 'who' or "where"
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+ who = v
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+ if any(["sub" in k.lower(), "hea" in k.lower()]): # 'subject', 'header'
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+ subject = v
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+ if any(
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+ ["wha" in k.lower(), "con" in k.lower(), "bod" in k.lower()]
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+ ): # 'what','content','body'
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+ what = v
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+ if any(["att" in k.lower(), "fil" in k.lower()]): # 'attachments', 'file'
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+ attachments = v # optional
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+ if any(
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+ ["paus" in k.lower(), "tim" in k.lower(), "delay" in k.lower()]
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+ ): # 'attachments', 'file'
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+ pause_sec = v # optional
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+ if any(["sig" in k.lower()]): # 'attachments', 'file'
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+ signature = v # optional
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+ if not isinstance(v, str):
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+ signature = signature_styles[v]
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+
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+ # config sender
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+ email_address = "andyandhope@gmail.com"
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+ email_password = "myff ltls sfym wehe" # this is fake info
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+
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+ # Create email message
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+ message = MIMEMultipart()
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+ message["From"] = email_address
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+ message["To"] = who
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+ message["Subject"] = subject
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+
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+ # add signature
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+ if signature:
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+ what += f"\n\n{signature}\n"
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+
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+ # the eamil's body
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+ message.attach(MIMEText(what, "plain"))
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+
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+ # attach files
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+ if attachments:
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+ if isinstance(attachments, str):
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+ attachments = [attachments]
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+ for file in attachments:
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+ part = MIMEBase("application", "octet-stream")
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+ try:
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+ with open(file, "rb") as attachment:
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+ part.set_payload(attachment.read())
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+ encoders.encode_base64(part)
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+
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+ fname = os.path.basename(file)
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+ print(fname)
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+ part.add_header(
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+ "Content-Disposition", f'attachment; filename= "{fname}"'
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+ )
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+ message.attach(part)
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+ except FileNotFoundError:
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+ print(f"File not found: {file}")
108
+ except Exception as e:
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+ print(f"Error attaching file {file}: {e}")
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+ if pause_sec:
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+ time.sleep(pause_sec)
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+ # Send the email
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+ try:
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+ with smtplib.SMTP("smtp.gmail.com", 587) as server:
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+ server.starttls()
116
+ server.login(email_address, email_password)
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+ server.sendmail(email_address, who, message.as_string())
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+ print(f"Email successfully sent to {who}")
119
+ except Exception as e:
120
+ print(f"Failed to send email: {e}")
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+
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+
123
+ def email_to_every(who, subject, what, when, attachments=None):
124
+ """
125
+ Check the time and send an email when the time matches the when.
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+
127
+ :param who: Recipient email address
128
+ :param subject: Email subject
129
+ :param what: Email what
130
+ :param when: Time to send the email in HH:MM format
131
+ :param attachments: List of file paths to attach
132
+ """
133
+ current_time = datetime.now().strftime("%H:%M")
134
+ if current_time == when:
135
+ email_to(
136
+ who=who,
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+ subject=subject,
138
+ what=what,
139
+ attachments=attachments,
140
+ )
141
+
142
+
143
+ # Example usage
144
+ def example_job():
145
+ # Example email details
146
+ reminder_subject = "Reminder: Important Meeting Tomorrow"
147
+ reminder_what = (
148
+ "Don't forget about the meeting tomorrow at 10 AM in the conference room."
149
+ )
150
+ who = "Jianfeng.Liu0413@gmail.com"
151
+ when = "14:30" # Send time in 24-hour format
152
+
153
+ # Optional attachments
154
+ attachments = ["path/to/attachment1.pdf", "path/to/attachment2.jpg"]
155
+
156
+ # Schedule the email
157
+ email_to_every(who, reminder_subject, reminder_what, when, attachments)
158
+
159
+
160
+ if __name__ == "__main__":
161
+ # Schedule the job to run every minute
162
+ schedule.every(1).minutes.do(example_job)
163
+
164
+ while True:
165
+ schedule.run_pending()
166
+ time.sleep(1)
167
+
168
+ # example2:
169
+ email_to(
170
+ who="Jianfeng.Liu@medizin.uni-tuebingen.de",
171
+ subj="test",
172
+ wha="this is the body",
173
+ signat="\n\n Best, Jianfeng\n",
174
+ att="/Users/macjianfeng/Dropbox/Downloads/_*_doc-xlsx/20240822-preprints_full_20190101_20201031-2.xlsx",
175
+ )
176
+ # example3:
177
+ email_to(
178
+ who="Jianfeng.Liu@medizin.uni-tuebingen.de",
179
+ subj="test",
180
+ wha="this is the test",
181
+ signat=2,
182
+ att="/Users/macjianfeng/Dropbox/Downloads/_*_doc-xlsx/20240822-preprints_full_20190101_20201031-2.xlsx",
183
+ )
py2ls/data/styles/style10.json ADDED
@@ -0,0 +1,213 @@
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+ {
2
+ "style": "style6",
3
+ "layer": [
4
+ "b",
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+ "bx",
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+ "e",
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+ "v",
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+ "s",
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+ "l"
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+ ],
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+ "b": {
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+ "go": 0,
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+ "loc": "c",
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+ "FaceAlpha": 1,
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+ "EdgeColor": "k",
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+ "EdgeAlpha": 1,
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+ "LineStyle": "-",
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+ "LineWidth": 0.8,
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+ "x_width": 0.85,
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+ "ShowBaseLine": "off",
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+ "hatch": null,
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+ "FaceColor": [
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+ "#474747",
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+ "#FF2C00",
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+ "#0C5DA5",
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+ "#845B97",
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+ "#58BBCC"
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+ ],
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+ "x_dist": 0.85
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+ },
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+ "e": {
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+ "go": 0,
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+ "loc": "l",
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+ "LineWidth": 1,
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+ "CapLineWidth": 1,
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+ "CapSize": 2,
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+ "Marker": "none",
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+ "LineStyle": "none",
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+ "LineColor": "k",
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+ "LineJoin": "round",
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+ "MarkerSize": "auto",
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+ "MarkerEdgeColor": "none",
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+ "Visible": true,
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+ "Orientation": "vertical",
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+ "error": "sem",
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+ "x_width": 0.16999999999999998,
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+ "cap_dir": "b",
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+ "LineAlpha": 0.5,
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+ "FaceColor": [
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+ "#474747",
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+ "#FF2C00",
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+ "#0C5DA5",
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+ "#845B97",
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+ "#58BBCC"
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+ ],
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+ "x_dist": 0.16999999999999998
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+ },
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+ "s": {
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+ "go": 0,
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+ "loc": "r",
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+ "cmap": null,
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+ "FaceAlpha": 1,
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+ "x_width": 0.16999999999999998,
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+ "Marker": "o",
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+ "MarkerSize": 15,
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+ "LineWidth": 0.8,
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+ "MarkerEdgeColor": "k",
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+ "FaceColor": [
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+ "#474747",
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+ "#FF2C00",
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+ "#0C5DA5",
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+ "#845B97",
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+ "#58BBCC"
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+ ],
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+ "x_dist": 0.16999999999999998
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+ },
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+ "l": {
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+ "go": 1,
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+ "LineStyle": "-",
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+ "LineColor": "k",
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+ "LineWidth": 0.5,
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+ "LineAlpha": 0.5
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+ },
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+ "bx": {
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+ "go": 1,
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+ "loc": "c",
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+ "EdgeColor": "k",
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+ "FaceAlpha": 0.85,
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+ "EdgeAlpha": 1,
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+ "LineStyle": "-",
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+ "x_width": 0.1,
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+ "ShowBaseLine": "off",
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+ "Notch": false,
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+ "Outliers": false,
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+ "OutlierMarker": "+",
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+ "OutlierColor": "r",
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+ "OutlierSize": 6,
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+ "LineWidth": 0.5,
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+ "Whisker": 0.5,
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+ "Orientation": "vertical",
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+ "BoxLineWidth": 0.5,
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+ "WhiskerLineStyle": "-",
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+ "WhiskerLineColor": "k",
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+ "WhiskerLineWidth": 0.5,
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+ "Caps": true,
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+ "CapLineColor": "k",
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+ "CapLineWidth": 0.5,
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+ "CapSize": 0,
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+ "MedianLine": false,
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+ "MedianLineStyle": "-",
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+ "MedianStyle": "line",
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+ "MedianLineColor": "k",
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+ "MedianLineWidth": 2.0,
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+ "MedianLineTop": false,
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+ "MeanLine": true,
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+ "showmeans": false,
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+ "MeanLineStyle": "-",
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+ "MeanLineColor": "w",
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+ "MeanLineWidth": 2.0,
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+ "FaceColor": [
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+ "#474747",
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+ "#FF2C00",
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+ "#0C5DA5",
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+ "#845B97",
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+ "#58BBCC"
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+ ],
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+ "x_dist": 0.2,
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+ "OutlierFaceColor": "r",
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+ "OutlierEdgeColor": "r"
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+ },
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+ "v": {
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+ "go": 1,
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+ "x_width": 0.3,
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+ "loc": "r",
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+ "EdgeColor": "none",
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+ "FaceAlpha": 0.9,
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+ "BandWidth": "scott",
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+ "Function": "pdf",
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+ "Kernel": "gau",
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+ "NumPoints": 500,
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+ "BoundaryCorrection": "reflection",
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+ "x_dist": 0.1,
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+ "FaceColor": [
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+ "#474747",
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+ "#FF2C00",
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+ "#0C5DA5",
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+ "#845B97",
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+ "#58BBCC"
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+ ]
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+ },
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+ "c": [
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+ "#474747",
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+ "#FF2C00",
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+ "#0C5DA5",
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+ "#845B97",
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+ "#58BBCC"
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+ ],
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+ "loc": {
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+ "go": 0,
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+ "xloc": [
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+ 1,
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+ 2,
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+ 3,
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+ 4,
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+ 5
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+ ]
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+ },
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+ "r": {
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+ "go": 0,
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+ "bw_adjust": 1,
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+ "clip": false,
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+ "FaceColor": [
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+ "#474747",
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+ "#FF2C00",
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+ "#0C5DA5",
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+ "#845B97",
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+ "#58BBCC",
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+ "#FF9500",
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+ "#D57DBE",
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+ "#474747",
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+ "#FF2C00",
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+ "#0C5DA5",
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+ "#845B97",
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+ "#58BBCC",
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+ "#FF9500",
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+ "#D57DBE",
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+ "#474747",
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+ "#FF2C00",
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+ "#0C5DA5",
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+ "#845B97",
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+ "#58BBCC",
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+ "#FF9500"
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+ ],
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+ "FaceAlpha": 1,
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+ "EdgeLineWidth": 1.5,
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+ "fill": true,
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+ "EdgeColor": "none",
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+ "xLineWidth": 2.0,
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+ "xLineColor": "none",
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+ "aspect": 8,
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+ "subplot_hspace": -0.3,
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+ "subplot_height": 0.75,
203
+ "subplot_ylabel": "",
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+ "column4color": null,
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+ "row_labels": null,
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+ "row_label_loc_xscale": 0.01,
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+ "row_label_loc_yscale": 0.05,
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+ "fontweight": "normal",
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+ "fontsize": 11.0,
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+ "color_row_label": "k",
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+ "ylabel": null
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+ }
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+ }
py2ls/data/styles/style11.json ADDED
@@ -0,0 +1,213 @@
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+ {
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+ "style": "style6",
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+ "layer": [
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+ "b",
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+ "bx",
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+ "e",
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+ "v",
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+ "s",
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+ "l"
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+ ],
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+ "b": {
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+ "go": 0,
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+ "loc": "c",
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+ "FaceAlpha": 1,
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+ "EdgeColor": "k",
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+ "EdgeAlpha": 1,
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+ "LineStyle": "-",
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+ "LineWidth": 0.8,
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+ "x_width": 0.85,
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+ "ShowBaseLine": "off",
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+ "hatch": null,
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+ "FaceColor": [
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+ "#474747",
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+ "#FF2C00",
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+ "#0C5DA5",
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+ "#845B97",
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+ "#58BBCC"
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+ ],
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+ "x_dist": 0.85
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+ },
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+ "e": {
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+ "go": 0,
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+ "loc": "l",
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+ "LineWidth": 1,
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+ "CapLineWidth": 1,
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+ "CapSize": 2,
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+ "Marker": "none",
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+ "LineStyle": "none",
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+ "LineColor": "k",
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+ "LineJoin": "round",
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+ "MarkerSize": "auto",
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+ "MarkerEdgeColor": "none",
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+ "Visible": true,
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+ "Orientation": "vertical",
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+ "error": "sem",
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+ "x_width": 0.16999999999999998,
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+ "cap_dir": "b",
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+ "LineAlpha": 0.5,
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+ "FaceColor": [
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+ "#474747",
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+ "#FF2C00",
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+ "#0C5DA5",
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+ "#845B97",
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+ "#58BBCC"
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+ ],
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+ "x_dist": 0.16999999999999998
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+ },
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+ "s": {
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+ "cmap": null,
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+ "FaceAlpha": 1,
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+ "x_width": 0.16999999999999998,
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+ "MarkerSize": 15,
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+ "LineWidth": 0.8,
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+ "MarkerEdgeColor": "k",
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+ "FaceColor": [
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+ "#474747",
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+ "#FF2C00",
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+ "#0C5DA5",
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+ "#845B97",
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+ "#58BBCC"
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+ ],
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+ "x_dist": 0.16999999999999998
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+ },
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+ "OutlierEdgeColor": "r"
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+ "BandWidth": "scott",
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+ "Function": "pdf",
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+ "Kernel": "gau",
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+ "NumPoints": 500,
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+ "BoundaryCorrection": "reflection",
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+ "x_dist": 0.1,
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+ "#FF2C00",
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+ "#0C5DA5",
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+ "#845B97",
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+ "#58BBCC"
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+ ]
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+ },
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+ "#FF2C00",
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+ ],
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+ ]
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+ },
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+ "clip": false,
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+ "FaceColor": [
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+ "#474747",
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+ "#FF2C00",
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+ "#0C5DA5",
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+ "#845B97",
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+ "#58BBCC",
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+ "#FF9500",
179
+ "#D57DBE",
180
+ "#474747",
181
+ "#FF2C00",
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+ "#0C5DA5",
183
+ "#845B97",
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+ "#58BBCC",
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+ "#FF9500",
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+ "#D57DBE",
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+ "#474747",
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+ "#FF2C00",
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+ "#0C5DA5",
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+ "#845B97",
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+ "#58BBCC",
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+ "#FF9500"
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+ ],
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+ "FaceAlpha": 1,
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+ "EdgeLineWidth": 1.5,
196
+ "fill": true,
197
+ "EdgeColor": "none",
198
+ "xLineWidth": 2.0,
199
+ "xLineColor": "none",
200
+ "aspect": 8,
201
+ "subplot_hspace": -0.3,
202
+ "subplot_height": 0.75,
203
+ "subplot_ylabel": "",
204
+ "column4color": null,
205
+ "row_labels": null,
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+ "row_label_loc_xscale": 0.01,
207
+ "row_label_loc_yscale": 0.05,
208
+ "fontweight": "normal",
209
+ "fontsize": 11.0,
210
+ "color_row_label": "k",
211
+ "ylabel": null
212
+ }
213
+ }