phenoml 0.0.2__py3-none-any.whl → 0.0.17__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (149) hide show
  1. phenoml/agent/__init__.py +6 -8
  2. phenoml/agent/client.py +85 -67
  3. phenoml/agent/raw_client.py +61 -77
  4. phenoml/agent/types/__init__.py +6 -8
  5. phenoml/agent/types/agent_create_request.py +53 -0
  6. phenoml/agent/types/agent_create_request_provider.py +5 -0
  7. phenoml/agent/types/agent_template.py +3 -6
  8. phenoml/agent/types/agent_template_provider.py +5 -0
  9. phenoml/agent/types/json_patch_operation.py +5 -1
  10. phenoml/client.py +12 -0
  11. phenoml/construe/__init__.py +2 -16
  12. phenoml/construe/client.py +0 -90
  13. phenoml/construe/raw_client.py +0 -180
  14. phenoml/construe/types/__init__.py +2 -20
  15. phenoml/construe/types/extract_request_config.py +33 -4
  16. phenoml/construe/types/extract_request_config_chunking_method.py +3 -1
  17. phenoml/construe/types/extract_request_config_validation_method.py +5 -0
  18. phenoml/construe/types/extract_request_system.py +2 -0
  19. phenoml/core/client_wrapper.py +2 -2
  20. phenoml/fhir/__init__.py +36 -0
  21. phenoml/fhir/client.py +1072 -0
  22. phenoml/fhir/errors/__init__.py +10 -0
  23. phenoml/fhir/errors/bad_request_error.py +10 -0
  24. phenoml/fhir/errors/internal_server_error.py +10 -0
  25. phenoml/fhir/errors/not_found_error.py +10 -0
  26. phenoml/fhir/errors/unauthorized_error.py +10 -0
  27. phenoml/fhir/raw_client.py +1469 -0
  28. phenoml/fhir/types/__init__.py +29 -0
  29. phenoml/{agent/types/chat_fhir_client_config.py → fhir/types/error_response.py} +11 -6
  30. phenoml/fhir/types/fhir_bundle.py +43 -0
  31. phenoml/fhir/types/fhir_bundle_entry_item.py +34 -0
  32. phenoml/fhir/types/fhir_bundle_entry_item_request.py +25 -0
  33. phenoml/fhir/types/fhir_bundle_entry_item_request_method.py +5 -0
  34. phenoml/{construe/types/bad_request_error_body.py → fhir/types/fhir_bundle_entry_item_response.py} +4 -7
  35. phenoml/fhir/types/fhir_patch_request_body_item.py +40 -0
  36. phenoml/fhir/types/fhir_patch_request_body_item_op.py +7 -0
  37. phenoml/fhir/types/fhir_resource.py +40 -0
  38. phenoml/fhir/types/fhir_resource_meta.py +28 -0
  39. phenoml/fhir/types/fhir_search_response.py +8 -0
  40. phenoml/fhir_provider/__init__.py +45 -0
  41. phenoml/fhir_provider/client.py +748 -0
  42. phenoml/fhir_provider/errors/__init__.py +11 -0
  43. phenoml/fhir_provider/errors/bad_request_error.py +10 -0
  44. phenoml/fhir_provider/errors/forbidden_error.py +10 -0
  45. phenoml/fhir_provider/errors/internal_server_error.py +10 -0
  46. phenoml/fhir_provider/errors/not_found_error.py +10 -0
  47. phenoml/fhir_provider/errors/unauthorized_error.py +10 -0
  48. phenoml/fhir_provider/raw_client.py +1462 -0
  49. phenoml/fhir_provider/types/__init__.py +37 -0
  50. phenoml/fhir_provider/types/auth_method.py +7 -0
  51. phenoml/fhir_provider/types/fhir_provider_auth_config.py +53 -0
  52. phenoml/fhir_provider/types/fhir_provider_delete_response.py +20 -0
  53. phenoml/fhir_provider/types/fhir_provider_list_response.py +22 -0
  54. phenoml/fhir_provider/types/fhir_provider_remove_auth_config_response.py +22 -0
  55. phenoml/fhir_provider/types/fhir_provider_response.py +22 -0
  56. phenoml/fhir_provider/types/fhir_provider_set_active_auth_config_response.py +22 -0
  57. phenoml/fhir_provider/types/fhir_provider_template.py +66 -0
  58. phenoml/fhir_provider/types/fhir_query_response.py +27 -0
  59. phenoml/fhir_provider/types/fhir_query_response_data.py +5 -0
  60. phenoml/fhir_provider/types/json_web_key.py +51 -0
  61. phenoml/fhir_provider/types/provider.py +8 -0
  62. phenoml/fhir_provider/types/role.py +27 -0
  63. phenoml/fhir_provider/types/service_account_key.py +35 -0
  64. phenoml/fhir_provider/types/smart_configuration.py +46 -0
  65. phenoml/lang2fhir/__init__.py +10 -0
  66. phenoml/lang2fhir/client.py +111 -6
  67. phenoml/lang2fhir/raw_client.py +189 -0
  68. phenoml/lang2fhir/types/__init__.py +10 -0
  69. phenoml/lang2fhir/types/create_multi_response.py +39 -0
  70. phenoml/lang2fhir/types/create_multi_response_bundle.py +28 -0
  71. phenoml/lang2fhir/types/create_multi_response_bundle_entry_item.py +24 -0
  72. phenoml/lang2fhir/types/create_multi_response_bundle_entry_item_request.py +20 -0
  73. phenoml/{construe/types/construe_cohort_response_queries_item_code_extract_results_item_codes_item.py → lang2fhir/types/create_multi_response_resources_item.py} +13 -7
  74. phenoml/summary/__init__.py +41 -0
  75. phenoml/summary/client.py +668 -0
  76. phenoml/summary/errors/__init__.py +11 -0
  77. phenoml/summary/errors/bad_request_error.py +10 -0
  78. phenoml/summary/errors/forbidden_error.py +10 -0
  79. phenoml/summary/errors/internal_server_error.py +10 -0
  80. phenoml/summary/errors/not_found_error.py +10 -0
  81. phenoml/summary/errors/unauthorized_error.py +10 -0
  82. phenoml/summary/raw_client.py +1202 -0
  83. phenoml/summary/types/__init__.py +33 -0
  84. phenoml/summary/types/create_summary_request_fhir_resources.py +8 -0
  85. phenoml/summary/types/create_summary_request_mode.py +5 -0
  86. phenoml/{agent/types/agent_fhir_config.py → summary/types/create_summary_response.py} +7 -9
  87. phenoml/summary/types/create_summary_template_response.py +23 -0
  88. phenoml/{construe/types/unauthorized_error_body.py → summary/types/error_response.py} +4 -8
  89. phenoml/summary/types/fhir_bundle.py +23 -0
  90. phenoml/summary/types/fhir_bundle_entry_item.py +20 -0
  91. phenoml/summary/types/fhir_resource.py +24 -0
  92. phenoml/summary/types/summary_delete_template_response.py +20 -0
  93. phenoml/summary/types/summary_get_template_response.py +21 -0
  94. phenoml/summary/types/summary_list_templates_response.py +21 -0
  95. phenoml/summary/types/summary_template.py +41 -0
  96. phenoml/summary/types/summary_update_template_response.py +22 -0
  97. phenoml/tools/__init__.py +6 -8
  98. phenoml/tools/client.py +259 -44
  99. phenoml/tools/raw_client.py +347 -55
  100. phenoml/tools/types/__init__.py +6 -8
  101. phenoml/tools/types/lang2fhir_and_create_multi_response.py +41 -0
  102. phenoml/{construe/types/construe_cohort_response_queries_item_code_extract_results_item.py → tools/types/lang2fhir_and_create_multi_response_resource_info_item.py} +14 -7
  103. phenoml/tools/types/lang2fhir_and_create_multi_response_response_bundle.py +27 -0
  104. phenoml/workflows/__init__.py +61 -0
  105. phenoml/workflows/client.py +694 -0
  106. phenoml/workflows/errors/__init__.py +11 -0
  107. phenoml/workflows/errors/bad_request_error.py +10 -0
  108. phenoml/workflows/errors/forbidden_error.py +10 -0
  109. phenoml/workflows/errors/internal_server_error.py +10 -0
  110. phenoml/workflows/errors/not_found_error.py +10 -0
  111. phenoml/workflows/errors/unauthorized_error.py +10 -0
  112. phenoml/workflows/raw_client.py +1266 -0
  113. phenoml/workflows/types/__init__.py +53 -0
  114. phenoml/workflows/types/create_workflow_request_fhir_provider_id.py +5 -0
  115. phenoml/workflows/types/create_workflow_response.py +44 -0
  116. phenoml/{tools/types/fhir_client_config.py → workflows/types/decision_node_definition.py} +7 -6
  117. phenoml/workflows/types/execute_workflow_response.py +30 -0
  118. phenoml/{construe/types/internal_server_error_body.py → workflows/types/execute_workflow_response_results.py} +3 -8
  119. phenoml/workflows/types/lang2fhir_create_definition.py +37 -0
  120. phenoml/workflows/types/lang2fhir_search_definition.py +42 -0
  121. phenoml/workflows/types/list_workflows_response.py +39 -0
  122. phenoml/workflows/types/step_operation.py +26 -0
  123. phenoml/workflows/types/sub_workflow_definition.py +32 -0
  124. phenoml/workflows/types/update_workflow_request_fhir_provider_id.py +5 -0
  125. phenoml/workflows/types/workflow_config.py +27 -0
  126. phenoml/workflows/types/workflow_definition.py +57 -0
  127. phenoml/workflows/types/workflow_graph.py +23 -0
  128. phenoml/workflows/types/workflow_response.py +61 -0
  129. phenoml/workflows/types/workflow_response_graph.py +23 -0
  130. phenoml/workflows/types/workflow_step.py +55 -0
  131. phenoml/workflows/types/workflow_step_summary.py +47 -0
  132. phenoml/workflows/types/workflow_step_summary_type.py +5 -0
  133. phenoml/workflows/types/workflow_step_type.py +5 -0
  134. phenoml/workflows/types/workflows_delete_response.py +20 -0
  135. phenoml/workflows/types/workflows_get_response.py +26 -0
  136. phenoml/workflows/types/workflows_update_response.py +31 -0
  137. phenoml-0.0.17.dist-info/LICENSE +21 -0
  138. {phenoml-0.0.2.dist-info → phenoml-0.0.17.dist-info}/METADATA +1 -1
  139. phenoml-0.0.17.dist-info/RECORD +251 -0
  140. phenoml/agent/types/agent_provider.py +0 -7
  141. phenoml/agent/types/provider_type.py +0 -5
  142. phenoml/construe/types/construe_cohort_request_config.py +0 -37
  143. phenoml/construe/types/construe_cohort_response.py +0 -33
  144. phenoml/construe/types/construe_cohort_response_queries_item.py +0 -49
  145. phenoml/tools/types/cohort_request_provider.py +0 -5
  146. phenoml/tools/types/lang2fhir_and_create_request_provider.py +0 -7
  147. phenoml/tools/types/lang2fhir_and_search_request_provider.py +0 -7
  148. phenoml-0.0.2.dist-info/RECORD +0 -153
  149. {phenoml-0.0.2.dist-info → phenoml-0.0.17.dist-info}/WHEEL +0 -0
phenoml/fhir/errors/__init__.py ADDED
@@ -0,0 +1,10 @@
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+ # This file was auto-generated by Fern from our API Definition.
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+
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+ # isort: skip_file
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+
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+ from .bad_request_error import BadRequestError
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+ from .internal_server_error import InternalServerError
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+ from .not_found_error import NotFoundError
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+ from .unauthorized_error import UnauthorizedError
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+
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+ __all__ = ["BadRequestError", "InternalServerError", "NotFoundError", "UnauthorizedError"]
phenoml/fhir/errors/bad_request_error.py ADDED
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+ # This file was auto-generated by Fern from our API Definition.
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+
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+ import typing
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+
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+ from ...core.api_error import ApiError
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+
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+
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+ class BadRequestError(ApiError):
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+ def __init__(self, body: typing.Optional[typing.Any], headers: typing.Optional[typing.Dict[str, str]] = None):
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+ super().__init__(status_code=400, headers=headers, body=body)
phenoml/fhir/errors/internal_server_error.py ADDED
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+ # This file was auto-generated by Fern from our API Definition.
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+
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+ import typing
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+
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+ from ...core.api_error import ApiError
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+
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+
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+ class InternalServerError(ApiError):
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+ def __init__(self, body: typing.Optional[typing.Any], headers: typing.Optional[typing.Dict[str, str]] = None):
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+ super().__init__(status_code=500, headers=headers, body=body)
phenoml/fhir/errors/not_found_error.py ADDED
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+ # This file was auto-generated by Fern from our API Definition.
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+
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+ import typing
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+
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+ from ...core.api_error import ApiError
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+
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+
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+ class NotFoundError(ApiError):
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+ def __init__(self, body: typing.Optional[typing.Any], headers: typing.Optional[typing.Dict[str, str]] = None):
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+ super().__init__(status_code=404, headers=headers, body=body)
phenoml/fhir/errors/unauthorized_error.py ADDED
@@ -0,0 +1,10 @@
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+ # This file was auto-generated by Fern from our API Definition.
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+
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+ import typing
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+
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+ from ...core.api_error import ApiError
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+
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+
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+ class UnauthorizedError(ApiError):
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+ def __init__(self, body: typing.Optional[typing.Any], headers: typing.Optional[typing.Dict[str, str]] = None):
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+ super().__init__(status_code=401, headers=headers, body=body)