phenoml 0.0.2__py3-none-any.whl → 0.0.17__py3-none-any.whl

phenoml/summary/types/__init__.py

@@ -0,0 +1,33 @@
+# This file was auto-generated by Fern from our API Definition.
+
+# isort: skip_file
+
+from .create_summary_request_fhir_resources import CreateSummaryRequestFhirResources
+from .create_summary_request_mode import CreateSummaryRequestMode
+from .create_summary_response import CreateSummaryResponse
+from .create_summary_template_response import CreateSummaryTemplateResponse
+from .error_response import ErrorResponse
+from .fhir_bundle import FhirBundle
+from .fhir_bundle_entry_item import FhirBundleEntryItem
+from .fhir_resource import FhirResource
+from .summary_delete_template_response import SummaryDeleteTemplateResponse
+from .summary_get_template_response import SummaryGetTemplateResponse
+from .summary_list_templates_response import SummaryListTemplatesResponse
+from .summary_template import SummaryTemplate
+from .summary_update_template_response import SummaryUpdateTemplateResponse
+
+__all__ = [
+    "CreateSummaryRequestFhirResources",
+    "CreateSummaryRequestMode",
+    "CreateSummaryResponse",
+    "CreateSummaryTemplateResponse",
+    "ErrorResponse",
+    "FhirBundle",
+    "FhirBundleEntryItem",
+    "FhirResource",
+    "SummaryDeleteTemplateResponse",
+    "SummaryGetTemplateResponse",
+    "SummaryListTemplatesResponse",
+    "SummaryTemplate",
+    "SummaryUpdateTemplateResponse",
+]

phenoml/summary/types/create_summary_request_fhir_resources.py

@@ -0,0 +1,8 @@
+# This file was auto-generated by Fern from our API Definition.
+
+import typing
+
+from .fhir_bundle import FhirBundle
+from .fhir_resource import FhirResource
+
+CreateSummaryRequestFhirResources = typing.Union[FhirResource, FhirBundle]

phenoml/summary/types/create_summary_request_mode.py

@@ -0,0 +1,5 @@
+# This file was auto-generated by Fern from our API Definition.
+
+import typing
+
+CreateSummaryRequestMode = typing.Union[typing.Literal["narrative", "flatten", "ips"], typing.Any]

phenoml/{agent/types/agent_fhir_config.py → summary/types/create_summary_response.py}

@@ -6,19 +6,17 @@ import pydantic
 from ...core.pydantic_utilities import IS_PYDANTIC_V2, UniversalBaseModel
 
 
-class AgentFhirConfig(UniversalBaseModel):
+class CreateSummaryResponse(UniversalBaseModel):
+    success: typing.Optional[bool] = None
+    message: typing.Optional[str] = None
+    summary: typing.Optional[str] = pydantic.Field(default=None)
     """
-    Agent-specific FHIR configuration (excludes user-specific fields)
+    Generated summary text
     """
 
-    fhir_store_id: typing.Optional[str] = pydantic.Field(default=None)
+    warnings: typing.Optional[typing.List[str]] = pydantic.Field(default=None)
     """
-    FHIR store ID for Google Healthcare provider
-    """
-
-    instance_name: typing.Optional[str] = pydantic.Field(default=None)
-    """
-    Instance name for multi-instance providers
+    Unresolved placeholders or issues (narrative mode only)
     """
 
     if IS_PYDANTIC_V2:

phenoml/summary/types/create_summary_template_response.py

@@ -0,0 +1,23 @@
+# This file was auto-generated by Fern from our API Definition.
+
+import typing
+
+import pydantic
+from ...core.pydantic_utilities import IS_PYDANTIC_V2, UniversalBaseModel
+from .summary_template import SummaryTemplate
+
+
+class CreateSummaryTemplateResponse(UniversalBaseModel):
+    success: typing.Optional[bool] = None
+    message: typing.Optional[str] = None
+    template_id: typing.Optional[str] = None
+    template: typing.Optional[SummaryTemplate] = None
+
+    if IS_PYDANTIC_V2:
+        model_config: typing.ClassVar[pydantic.ConfigDict] = pydantic.ConfigDict(extra="allow", frozen=True)  # type: ignore # Pydantic v2
+    else:
+
+        class Config:
+            frozen = True
+            smart_union = True
+            extra = pydantic.Extra.allow

phenoml/{construe/types/unauthorized_error_body.py → summary/types/error_response.py}

@@ -6,15 +6,11 @@ import pydantic
 from ...core.pydantic_utilities import IS_PYDANTIC_V2, UniversalBaseModel
 
 
-class UnauthorizedErrorBody(UniversalBaseModel):
-    status: typing.Optional[int] = pydantic.Field(default=None)
+class ErrorResponse(UniversalBaseModel):
+    success: typing.Optional[bool] = None
+    error: typing.Optional[str] = pydantic.Field(default=None)
     """
-    HTTP status code.
-    """
-
-    message: typing.Optional[str] = pydantic.Field(default=None)
-    """
-    Error message.
+    Error message describing what went wrong
     """
 
     if IS_PYDANTIC_V2:

phenoml/summary/types/fhir_bundle.py

@@ -0,0 +1,23 @@
+# This file was auto-generated by Fern from our API Definition.
+
+import typing
+
+import pydantic
+import typing_extensions
+from ...core.pydantic_utilities import IS_PYDANTIC_V2, UniversalBaseModel
+from ...core.serialization import FieldMetadata
+from .fhir_bundle_entry_item import FhirBundleEntryItem
+
+
+class FhirBundle(UniversalBaseModel):
+    resource_type: typing_extensions.Annotated[typing.Literal["Bundle"], FieldMetadata(alias="resourceType")] = "Bundle"
+    entry: typing.List[FhirBundleEntryItem]
+
+    if IS_PYDANTIC_V2:
+        model_config: typing.ClassVar[pydantic.ConfigDict] = pydantic.ConfigDict(extra="allow", frozen=True)  # type: ignore # Pydantic v2
+    else:
+
+        class Config:
+            frozen = True
+            smart_union = True
+            extra = pydantic.Extra.allow

phenoml/summary/types/fhir_bundle_entry_item.py

@@ -0,0 +1,20 @@
+# This file was auto-generated by Fern from our API Definition.
+
+import typing
+
+import pydantic
+from ...core.pydantic_utilities import IS_PYDANTIC_V2, UniversalBaseModel
+from .fhir_resource import FhirResource
+
+
+class FhirBundleEntryItem(UniversalBaseModel):
+    resource: typing.Optional[FhirResource] = None
+
+    if IS_PYDANTIC_V2:
+        model_config: typing.ClassVar[pydantic.ConfigDict] = pydantic.ConfigDict(extra="allow", frozen=True)  # type: ignore # Pydantic v2
+    else:
+
+        class Config:
+            frozen = True
+            smart_union = True
+            extra = pydantic.Extra.allow

phenoml/summary/types/fhir_resource.py

@@ -0,0 +1,24 @@
+# This file was auto-generated by Fern from our API Definition.
+
+import typing
+
+import pydantic
+import typing_extensions
+from ...core.pydantic_utilities import IS_PYDANTIC_V2, UniversalBaseModel
+from ...core.serialization import FieldMetadata
+
+
+class FhirResource(UniversalBaseModel):
+    resource_type: typing_extensions.Annotated[str, FieldMetadata(alias="resourceType")] = pydantic.Field()
+    """
+    FHIR resource type
+    """
+
+    if IS_PYDANTIC_V2:
+        model_config: typing.ClassVar[pydantic.ConfigDict] = pydantic.ConfigDict(extra="allow", frozen=True)  # type: ignore # Pydantic v2
+    else:
+
+        class Config:
+            frozen = True
+            smart_union = True
+            extra = pydantic.Extra.allow

phenoml/summary/types/summary_delete_template_response.py

@@ -0,0 +1,20 @@
+# This file was auto-generated by Fern from our API Definition.
+
+import typing
+
+import pydantic
+from ...core.pydantic_utilities import IS_PYDANTIC_V2, UniversalBaseModel
+
+
+class SummaryDeleteTemplateResponse(UniversalBaseModel):
+    success: typing.Optional[bool] = None
+    message: typing.Optional[str] = None
+
+    if IS_PYDANTIC_V2:
+        model_config: typing.ClassVar[pydantic.ConfigDict] = pydantic.ConfigDict(extra="allow", frozen=True)  # type: ignore # Pydantic v2
+    else:
+
+        class Config:
+            frozen = True
+            smart_union = True
+            extra = pydantic.Extra.allow

phenoml/summary/types/summary_get_template_response.py

@@ -0,0 +1,21 @@
+# This file was auto-generated by Fern from our API Definition.
+
+import typing
+
+import pydantic
+from ...core.pydantic_utilities import IS_PYDANTIC_V2, UniversalBaseModel
+from .summary_template import SummaryTemplate
+
+
+class SummaryGetTemplateResponse(UniversalBaseModel):
+    success: typing.Optional[bool] = None
+    template: typing.Optional[SummaryTemplate] = None
+
+    if IS_PYDANTIC_V2:
+        model_config: typing.ClassVar[pydantic.ConfigDict] = pydantic.ConfigDict(extra="allow", frozen=True)  # type: ignore # Pydantic v2
+    else:
+
+        class Config:
+            frozen = True
+            smart_union = True
+            extra = pydantic.Extra.allow

phenoml/summary/types/summary_list_templates_response.py

@@ -0,0 +1,21 @@
+# This file was auto-generated by Fern from our API Definition.
+
+import typing
+
+import pydantic
+from ...core.pydantic_utilities import IS_PYDANTIC_V2, UniversalBaseModel
+from .summary_template import SummaryTemplate
+
+
+class SummaryListTemplatesResponse(UniversalBaseModel):
+    success: typing.Optional[bool] = None
+    templates: typing.Optional[typing.List[SummaryTemplate]] = None
+
+    if IS_PYDANTIC_V2:
+        model_config: typing.ClassVar[pydantic.ConfigDict] = pydantic.ConfigDict(extra="allow", frozen=True)  # type: ignore # Pydantic v2
+    else:
+
+        class Config:
+            frozen = True
+            smart_union = True
+            extra = pydantic.Extra.allow

phenoml/summary/types/summary_template.py

@@ -0,0 +1,41 @@
+# This file was auto-generated by Fern from our API Definition.
+
+import datetime as dt
+import typing
+
+import pydantic
+from ...core.pydantic_utilities import IS_PYDANTIC_V2, UniversalBaseModel
+
+
+class SummaryTemplate(UniversalBaseModel):
+    id: typing.Optional[str] = None
+    user_id: typing.Optional[str] = None
+    name: typing.Optional[str] = None
+    description: typing.Optional[str] = None
+    template: typing.Optional[str] = pydantic.Field(default=None)
+    """
+    Template with {{resource.field}} placeholders
+    """
+
+    target_resources: typing.Optional[typing.List[str]] = pydantic.Field(default=None)
+    """
+    List of FHIR resource types/profiles
+    """
+
+    mode: typing.Optional[str] = pydantic.Field(default=None)
+    """
+    Template mode (stored value)
+    """
+
+    metadata: typing.Optional[typing.Dict[str, typing.Optional[typing.Any]]] = None
+    created_at: typing.Optional[dt.datetime] = None
+    updated_at: typing.Optional[dt.datetime] = None
+
+    if IS_PYDANTIC_V2:
+        model_config: typing.ClassVar[pydantic.ConfigDict] = pydantic.ConfigDict(extra="allow", frozen=True)  # type: ignore # Pydantic v2
+    else:
+
+        class Config:
+            frozen = True
+            smart_union = True
+            extra = pydantic.Extra.allow

phenoml/summary/types/summary_update_template_response.py

@@ -0,0 +1,22 @@
+# This file was auto-generated by Fern from our API Definition.
+
+import typing
+
+import pydantic
+from ...core.pydantic_utilities import IS_PYDANTIC_V2, UniversalBaseModel
+from .summary_template import SummaryTemplate
+
+
+class SummaryUpdateTemplateResponse(UniversalBaseModel):
+    success: typing.Optional[bool] = None
+    message: typing.Optional[str] = None
+    template: typing.Optional[SummaryTemplate] = None
+
+    if IS_PYDANTIC_V2:
+        model_config: typing.ClassVar[pydantic.ConfigDict] = pydantic.ConfigDict(extra="allow", frozen=True)  # type: ignore # Pydantic v2
+    else:
+
+        class Config:
+            frozen = True
+            smart_union = True
+            extra = pydantic.Extra.allow

phenoml/tools/__init__.py

@@ -3,13 +3,12 @@
 # isort: skip_file
 
 from .types import (
-    CohortRequestProvider,
     CohortResponse,
-    FhirClientConfig,
-    Lang2FhirAndCreateRequestProvider,
+    Lang2FhirAndCreateMultiResponse,
+    Lang2FhirAndCreateMultiResponseResourceInfoItem,
+    Lang2FhirAndCreateMultiResponseResponseBundle,
     Lang2FhirAndCreateRequestResource,
     Lang2FhirAndCreateResponse,
-    Lang2FhirAndSearchRequestProvider,
     Lang2FhirAndSearchResponse,
     McpServerResponse,
     McpServerResponseData,
@@ -23,16 +22,15 @@ from . import mcp_server
 
 __all__ = [
     "BadRequestError",
-    "CohortRequestProvider",
     "CohortResponse",
     "FailedDependencyError",
-    "FhirClientConfig",
     "ForbiddenError",
     "InternalServerError",
-    "Lang2FhirAndCreateRequestProvider",
+    "Lang2FhirAndCreateMultiResponse",
+    "Lang2FhirAndCreateMultiResponseResourceInfoItem",
+    "Lang2FhirAndCreateMultiResponseResponseBundle",
     "Lang2FhirAndCreateRequestResource",
     "Lang2FhirAndCreateResponse",
-    "Lang2FhirAndSearchRequestProvider",
     "Lang2FhirAndSearchResponse",
     "McpServerResponse",
     "McpServerResponseData",