phenoml 0.0.2__py3-none-any.whl → 0.0.17__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (149) hide show
  1. phenoml/agent/__init__.py +6 -8
  2. phenoml/agent/client.py +85 -67
  3. phenoml/agent/raw_client.py +61 -77
  4. phenoml/agent/types/__init__.py +6 -8
  5. phenoml/agent/types/agent_create_request.py +53 -0
  6. phenoml/agent/types/agent_create_request_provider.py +5 -0
  7. phenoml/agent/types/agent_template.py +3 -6
  8. phenoml/agent/types/agent_template_provider.py +5 -0
  9. phenoml/agent/types/json_patch_operation.py +5 -1
  10. phenoml/client.py +12 -0
  11. phenoml/construe/__init__.py +2 -16
  12. phenoml/construe/client.py +0 -90
  13. phenoml/construe/raw_client.py +0 -180
  14. phenoml/construe/types/__init__.py +2 -20
  15. phenoml/construe/types/extract_request_config.py +33 -4
  16. phenoml/construe/types/extract_request_config_chunking_method.py +3 -1
  17. phenoml/construe/types/extract_request_config_validation_method.py +5 -0
  18. phenoml/construe/types/extract_request_system.py +2 -0
  19. phenoml/core/client_wrapper.py +2 -2
  20. phenoml/fhir/__init__.py +36 -0
  21. phenoml/fhir/client.py +1072 -0
  22. phenoml/fhir/errors/__init__.py +10 -0
  23. phenoml/fhir/errors/bad_request_error.py +10 -0
  24. phenoml/fhir/errors/internal_server_error.py +10 -0
  25. phenoml/fhir/errors/not_found_error.py +10 -0
  26. phenoml/fhir/errors/unauthorized_error.py +10 -0
  27. phenoml/fhir/raw_client.py +1469 -0
  28. phenoml/fhir/types/__init__.py +29 -0
  29. phenoml/{agent/types/chat_fhir_client_config.py → fhir/types/error_response.py} +11 -6
  30. phenoml/fhir/types/fhir_bundle.py +43 -0
  31. phenoml/fhir/types/fhir_bundle_entry_item.py +34 -0
  32. phenoml/fhir/types/fhir_bundle_entry_item_request.py +25 -0
  33. phenoml/fhir/types/fhir_bundle_entry_item_request_method.py +5 -0
  34. phenoml/{construe/types/bad_request_error_body.py → fhir/types/fhir_bundle_entry_item_response.py} +4 -7
  35. phenoml/fhir/types/fhir_patch_request_body_item.py +40 -0
  36. phenoml/fhir/types/fhir_patch_request_body_item_op.py +7 -0
  37. phenoml/fhir/types/fhir_resource.py +40 -0
  38. phenoml/fhir/types/fhir_resource_meta.py +28 -0
  39. phenoml/fhir/types/fhir_search_response.py +8 -0
  40. phenoml/fhir_provider/__init__.py +45 -0
  41. phenoml/fhir_provider/client.py +748 -0
  42. phenoml/fhir_provider/errors/__init__.py +11 -0
  43. phenoml/fhir_provider/errors/bad_request_error.py +10 -0
  44. phenoml/fhir_provider/errors/forbidden_error.py +10 -0
  45. phenoml/fhir_provider/errors/internal_server_error.py +10 -0
  46. phenoml/fhir_provider/errors/not_found_error.py +10 -0
  47. phenoml/fhir_provider/errors/unauthorized_error.py +10 -0
  48. phenoml/fhir_provider/raw_client.py +1462 -0
  49. phenoml/fhir_provider/types/__init__.py +37 -0
  50. phenoml/fhir_provider/types/auth_method.py +7 -0
  51. phenoml/fhir_provider/types/fhir_provider_auth_config.py +53 -0
  52. phenoml/fhir_provider/types/fhir_provider_delete_response.py +20 -0
  53. phenoml/fhir_provider/types/fhir_provider_list_response.py +22 -0
  54. phenoml/fhir_provider/types/fhir_provider_remove_auth_config_response.py +22 -0
  55. phenoml/fhir_provider/types/fhir_provider_response.py +22 -0
  56. phenoml/fhir_provider/types/fhir_provider_set_active_auth_config_response.py +22 -0
  57. phenoml/fhir_provider/types/fhir_provider_template.py +66 -0
  58. phenoml/fhir_provider/types/fhir_query_response.py +27 -0
  59. phenoml/fhir_provider/types/fhir_query_response_data.py +5 -0
  60. phenoml/fhir_provider/types/json_web_key.py +51 -0
  61. phenoml/fhir_provider/types/provider.py +8 -0
  62. phenoml/fhir_provider/types/role.py +27 -0
  63. phenoml/fhir_provider/types/service_account_key.py +35 -0
  64. phenoml/fhir_provider/types/smart_configuration.py +46 -0
  65. phenoml/lang2fhir/__init__.py +10 -0
  66. phenoml/lang2fhir/client.py +111 -6
  67. phenoml/lang2fhir/raw_client.py +189 -0
  68. phenoml/lang2fhir/types/__init__.py +10 -0
  69. phenoml/lang2fhir/types/create_multi_response.py +39 -0
  70. phenoml/lang2fhir/types/create_multi_response_bundle.py +28 -0
  71. phenoml/lang2fhir/types/create_multi_response_bundle_entry_item.py +24 -0
  72. phenoml/lang2fhir/types/create_multi_response_bundle_entry_item_request.py +20 -0
  73. phenoml/{construe/types/construe_cohort_response_queries_item_code_extract_results_item_codes_item.py → lang2fhir/types/create_multi_response_resources_item.py} +13 -7
  74. phenoml/summary/__init__.py +41 -0
  75. phenoml/summary/client.py +668 -0
  76. phenoml/summary/errors/__init__.py +11 -0
  77. phenoml/summary/errors/bad_request_error.py +10 -0
  78. phenoml/summary/errors/forbidden_error.py +10 -0
  79. phenoml/summary/errors/internal_server_error.py +10 -0
  80. phenoml/summary/errors/not_found_error.py +10 -0
  81. phenoml/summary/errors/unauthorized_error.py +10 -0
  82. phenoml/summary/raw_client.py +1202 -0
  83. phenoml/summary/types/__init__.py +33 -0
  84. phenoml/summary/types/create_summary_request_fhir_resources.py +8 -0
  85. phenoml/summary/types/create_summary_request_mode.py +5 -0
  86. phenoml/{agent/types/agent_fhir_config.py → summary/types/create_summary_response.py} +7 -9
  87. phenoml/summary/types/create_summary_template_response.py +23 -0
  88. phenoml/{construe/types/unauthorized_error_body.py → summary/types/error_response.py} +4 -8
  89. phenoml/summary/types/fhir_bundle.py +23 -0
  90. phenoml/summary/types/fhir_bundle_entry_item.py +20 -0
  91. phenoml/summary/types/fhir_resource.py +24 -0
  92. phenoml/summary/types/summary_delete_template_response.py +20 -0
  93. phenoml/summary/types/summary_get_template_response.py +21 -0
  94. phenoml/summary/types/summary_list_templates_response.py +21 -0
  95. phenoml/summary/types/summary_template.py +41 -0
  96. phenoml/summary/types/summary_update_template_response.py +22 -0
  97. phenoml/tools/__init__.py +6 -8
  98. phenoml/tools/client.py +259 -44
  99. phenoml/tools/raw_client.py +347 -55
  100. phenoml/tools/types/__init__.py +6 -8
  101. phenoml/tools/types/lang2fhir_and_create_multi_response.py +41 -0
  102. phenoml/{construe/types/construe_cohort_response_queries_item_code_extract_results_item.py → tools/types/lang2fhir_and_create_multi_response_resource_info_item.py} +14 -7
  103. phenoml/tools/types/lang2fhir_and_create_multi_response_response_bundle.py +27 -0
  104. phenoml/workflows/__init__.py +61 -0
  105. phenoml/workflows/client.py +694 -0
  106. phenoml/workflows/errors/__init__.py +11 -0
  107. phenoml/workflows/errors/bad_request_error.py +10 -0
  108. phenoml/workflows/errors/forbidden_error.py +10 -0
  109. phenoml/workflows/errors/internal_server_error.py +10 -0
  110. phenoml/workflows/errors/not_found_error.py +10 -0
  111. phenoml/workflows/errors/unauthorized_error.py +10 -0
  112. phenoml/workflows/raw_client.py +1266 -0
  113. phenoml/workflows/types/__init__.py +53 -0
  114. phenoml/workflows/types/create_workflow_request_fhir_provider_id.py +5 -0
  115. phenoml/workflows/types/create_workflow_response.py +44 -0
  116. phenoml/{tools/types/fhir_client_config.py → workflows/types/decision_node_definition.py} +7 -6
  117. phenoml/workflows/types/execute_workflow_response.py +30 -0
  118. phenoml/{construe/types/internal_server_error_body.py → workflows/types/execute_workflow_response_results.py} +3 -8
  119. phenoml/workflows/types/lang2fhir_create_definition.py +37 -0
  120. phenoml/workflows/types/lang2fhir_search_definition.py +42 -0
  121. phenoml/workflows/types/list_workflows_response.py +39 -0
  122. phenoml/workflows/types/step_operation.py +26 -0
  123. phenoml/workflows/types/sub_workflow_definition.py +32 -0
  124. phenoml/workflows/types/update_workflow_request_fhir_provider_id.py +5 -0
  125. phenoml/workflows/types/workflow_config.py +27 -0
  126. phenoml/workflows/types/workflow_definition.py +57 -0
  127. phenoml/workflows/types/workflow_graph.py +23 -0
  128. phenoml/workflows/types/workflow_response.py +61 -0
  129. phenoml/workflows/types/workflow_response_graph.py +23 -0
  130. phenoml/workflows/types/workflow_step.py +55 -0
  131. phenoml/workflows/types/workflow_step_summary.py +47 -0
  132. phenoml/workflows/types/workflow_step_summary_type.py +5 -0
  133. phenoml/workflows/types/workflow_step_type.py +5 -0
  134. phenoml/workflows/types/workflows_delete_response.py +20 -0
  135. phenoml/workflows/types/workflows_get_response.py +26 -0
  136. phenoml/workflows/types/workflows_update_response.py +31 -0
  137. phenoml-0.0.17.dist-info/LICENSE +21 -0
  138. {phenoml-0.0.2.dist-info → phenoml-0.0.17.dist-info}/METADATA +1 -1
  139. phenoml-0.0.17.dist-info/RECORD +251 -0
  140. phenoml/agent/types/agent_provider.py +0 -7
  141. phenoml/agent/types/provider_type.py +0 -5
  142. phenoml/construe/types/construe_cohort_request_config.py +0 -37
  143. phenoml/construe/types/construe_cohort_response.py +0 -33
  144. phenoml/construe/types/construe_cohort_response_queries_item.py +0 -49
  145. phenoml/tools/types/cohort_request_provider.py +0 -5
  146. phenoml/tools/types/lang2fhir_and_create_request_provider.py +0 -7
  147. phenoml/tools/types/lang2fhir_and_search_request_provider.py +0 -7
  148. phenoml-0.0.2.dist-info/RECORD +0 -153
  149. {phenoml-0.0.2.dist-info → phenoml-0.0.17.dist-info}/WHEEL +0 -0
phenoml-0.0.2.dist-info/RECORD DELETED
@@ -1,153 +0,0 @@
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- phenoml/__init__.py,sha256=SeYOCP1ABPA3aB2UDDPr5DOYT4UKKQcw1CHW49I51X8,778
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- phenoml/agent/__init__.py,sha256=2qedw1NC1vC72HCh6nGKOKixF6MK78q2EMpSzt8Ts5I,1437
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- phenoml/agent/client.py,sha256=p-5otm-wzfW9z-rdk02JSq88Na4CJoa202Ps_fthmms,26052
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- phenoml/agent/errors/__init__.py,sha256=Wnvf4XPELmAIZ-jVxx2t-dBNZ-X9PcDxPSL5EHqJr1Q,434
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- phenoml/agent/errors/bad_request_error.py,sha256=nv0bK4gtOnTon6a2NdVxJxHBje_O_7wIoRtXLZHovUQ,339
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- phenoml/agent/errors/forbidden_error.py,sha256=ek8-sffTy9gY3F0zyaSkcskDVvq9puXP_YvvB2BJYbA,338
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- phenoml/agent/errors/internal_server_error.py,sha256=biBHJfSP1_zWF5CJgxY4B8wrL1uC18RSccQ-BCKmYNs,343
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- phenoml/agent/errors/not_found_error.py,sha256=hQ1KdyGQJCBQqo6iLu2-szlKJdzaoV5odq_7kdXAEbc,337
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- phenoml/agent/errors/unauthorized_error.py,sha256=h8T6QhXuTo0GLL9MKfIM5p--wDqlB1-ZkMp3lY-aM3E,341
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- phenoml/agent/prompts/__init__.py,sha256=sZXw6tuCJBAQGXzYcEu7K5lfXDYi7Kqox1i3eMRavMM,207
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- phenoml/agent/prompts/client.py,sha256=c5AYtVpjJaJ9pr3137zumgbhkH-GMtHxHZTN0roRCeQ,18568
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- phenoml/agent/prompts/raw_client.py,sha256=n2R6TL8Rjix8ewpA3b3J68hy_sqlBOxMYMNcVT1uxH0,52339
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- phenoml/agent/prompts/types/__init__.py,sha256=N-qiOKtvTg2c7r8DaBddWQDaqjAEve1W-K-yCRLCi84,259
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- phenoml/agent/prompts/types/prompts_delete_response.py,sha256=hG7Y3lEyBAF2-cIIicRO5RVoBNOajNR9PHQ-1L2kMK8,599
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- phenoml/agent/prompts/types/prompts_list_response.py,sha256=7OzSEUyw2frge0HO7BiZf-I_DJBF0o5e20qsmK1-24s,714
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- phenoml/agent/raw_client.py,sha256=0-5mGXN6E9IKPAaf6MRN1zUgN-vN3j2tm8qkJwedz8A,66163
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- phenoml/agent/types/__init__.py,sha256=qWZt3TeWXxp8omwLlvQn4BY1U4akHzNGSd9e4szxC-o,1574
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- phenoml/agent/types/agent_chat_response.py,sha256=GqPcv7lyZlsypeqFwf1ecouik9A-9xDde0sckYOc8lA,862
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- phenoml/agent/types/agent_delete_response.py,sha256=9lZoZdvn6iBzqkC_jAZlPzJ9ZuEe9XX1_zZNII6pJJA,596
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- phenoml/agent/types/agent_fhir_config.py,sha256=7ZyTO8dAja-TEjU9TlIjolBDSpETys0hVoMM35loTNI,867
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- phenoml/agent/types/agent_get_chat_messages_request_order.py,sha256=LUV7Ngo98ZfHUIsC1P1hL5J_OVfEsW9iruvJAQSwGOU,171
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- phenoml/agent/types/agent_get_chat_messages_response.py,sha256=R5wS7akcqIfFJ96TYCfvsDTZqOUu_zfsxEmtcMvPev8,731
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- phenoml/agent/types/agent_list_response.py,sha256=NuEoSkEo5sd2Wu77TRrJeGB8IdtJbgxVx_uNIcl1qww,699
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- phenoml/agent/types/agent_prompts_response.py,sha256=sXkclmfF6FI7q9a35T1CkyYjBnHm0n6QABSOYb4ICBY,690
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- phenoml/agent/types/agent_provider.py,sha256=nO_HL6F0jJFy_Ur9zLLC5KP36rSrNZSrfqjOKOBY0jg,191
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- phenoml/agent/types/agent_response.py,sha256=bcLl5OAGrcGEgL6AIbVIiEpptoYk7R6Ydxw8t48ZP0U,680
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- phenoml/agent/types/agent_template.py,sha256=kyUAvm4HDN5Ra6XDXtezu9dcK2apj09AjPMaZCzqtEc,1631
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- phenoml/agent/types/chat_fhir_client_config.py,sha256=lsfY3hZbe7QSEVMtU6AKOB2-8F-f2bLjTe8bPM-mJ5o,892
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- phenoml/agent/types/chat_message_template.py,sha256=CV0ZB8LjhtK8J9mNBvSuY0dp3tYrrK-o1RSQIETSXTc,1737
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- phenoml/agent/types/chat_session_template.py,sha256=7mdd4KgknpEwRbqSuzQhRcmk-8PAdKPZKJb4eOKe110,1567
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- phenoml/agent/types/json_patch.py,sha256=pRf6g-LPfIpIfxhcFaVN7PyZ0eJ33fzTOyeMEGuw_18,178
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- phenoml/agent/types/json_patch_operation.py,sha256=c7AZWK78bqER3tKg_vnxXIY1Kn5YJNk_dEylc9EaWWQ,1200
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- phenoml/agent/types/json_patch_operation_op.py,sha256=mFp29lZK5-CnHFfVy1KnDjJ0wGqLHXY-80d_whSuueI,196
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- phenoml/agent/types/prompt_template.py,sha256=drYxmwZnYkX5Wr7N8GCgu0hATK3xBaDPU55-H54PEcw,1273
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- phenoml/agent/types/provider_type.py,sha256=1PB2nzacvJPqJb19q2lp_UknkwwQ1V-GuHVXDPS6yoE,186
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- phenoml/agent/types/success_response.py,sha256=VtvPZu4RVHCqqk1pltxU0wjusCGt4vBG71iWCHIkDAU,592
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- phenoml/authtoken/__init__.py,sha256=kVdBaOUSVWEGVP13qw7RRQYiSjFH9wlLz8m-e-PYOLE,429
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- phenoml/authtoken/auth/__init__.py,sha256=wrtu-e5kFkgFyHwKjM0A-zUVPrSMSdLSY6zkalwLoEY,171
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- phenoml/authtoken/auth/client.py,sha256=nNi0oZqfCyU_MlEfRfxdoSyB74cHXCU4IiRNItX3E3g,3514
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- phenoml/authtoken/auth/types/__init__.py,sha256=1cjAvlipCc3CVYyzVMn9IWzsG8m57rVuNRBKjCFiQsU,194
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- phenoml/authtoken/auth/types/auth_generate_token_response.py,sha256=HtxYr2hWrXKRPTbG3w4YOUnPYprIlemVSGAGqRn_UBQ,633
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- phenoml/authtoken/client.py,sha256=0Q0ch8cIgn-fLCq7vQn9jNgayW9_dvPlWCyJXYvpJas,1272
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- phenoml/authtoken/errors/__init__.py,sha256=Ua3Z6OWyRhcgrq0FSXOpwmOc4RxyTgzP2LXbkzGbMhk,234
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- phenoml/authtoken/errors/bad_request_error.py,sha256=nv0bK4gtOnTon6a2NdVxJxHBje_O_7wIoRtXLZHovUQ,339
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- phenoml/authtoken/errors/unauthorized_error.py,sha256=h8T6QhXuTo0GLL9MKfIM5p--wDqlB1-ZkMp3lY-aM3E,341
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- phenoml/authtoken/raw_client.py,sha256=85R3SJneFJ-fxGXzYOz_Se01pJ9bKXDTB_BP903PLhs,415
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- phenoml/authtoken/types/__init__.py,sha256=ruKn1OfqKNJmeB1h39vh7-8srePTRpWsqGQzCH9_vok,260
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- phenoml/authtoken/types/bad_request_error_body.py,sha256=9D69GH2JTNatHxwC7fDlFhTmRKIJ3jRojQP3MwmJ1KI,672
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- phenoml/authtoken/types/unauthorized_error_body.py,sha256=fqqAo2_kWj0nNwLjm1fd-2lQPu5QhPuJP0yB7yE8sRw,674
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- phenoml/client.py,sha256=xozoVP-oxG--8_RDg0yRoC2NO91BdEnCmFO_oj6dozo,6944
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- phenoml/cohort/__init__.py,sha256=T7swsjx17aidvorMPqyak0JeX13MT4itAEQvNHNOxuE,320
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- phenoml/cohort/client.py,sha256=4bA8cffE6EvLZVMveJ2_aGu90vtXUHYTfO0E9EQuN9U,3312
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- phenoml/cohort/errors/__init__.py,sha256=su56D86txLO0suHwq_Yixg4EaMbSyaB00cma1beOFGE,312
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- phenoml/cohort/errors/bad_request_error.py,sha256=nv0bK4gtOnTon6a2NdVxJxHBje_O_7wIoRtXLZHovUQ,339
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- phenoml/cohort/errors/internal_server_error.py,sha256=biBHJfSP1_zWF5CJgxY4B8wrL1uC18RSccQ-BCKmYNs,343
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- phenoml/cohort/errors/unauthorized_error.py,sha256=h8T6QhXuTo0GLL9MKfIM5p--wDqlB1-ZkMp3lY-aM3E,341
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- phenoml/cohort/raw_client.py,sha256=yhquYZ6fNyhAJG_-6YwQqLMOcIP_JvojryxOEXt_Qfc,7148
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- phenoml/cohort/types/__init__.py,sha256=zNq1Pom_534srvUJxnEcFPoUK98Cr4oYzPxvL_ifBmc,218
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- phenoml/cohort/types/cohort_response.py,sha256=A0ekTeNT6jh_yMRAcdnMoavcrqUGKZuy_6-k4YwoFmk,981
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- phenoml/cohort/types/search_concept.py,sha256=yIGRoIp8ASZ0I0G-9UA6eTseoZPwHrUuvRRQMamf4yA,1041
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- phenoml/construe/__init__.py,sha256=xcr0GYiTR5j3lLDWQ0Z9v4m4XCxjG2c_XckxTHZ08Lg,1424
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- phenoml/construe/client.py,sha256=ASwUxceI3zpaF8OGcljueyEchCIv9JMD5T0kpEDjGXA,12058
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- phenoml/construe/errors/__init__.py,sha256=vqkSMWgMY6cxAgnI7Gij9m9UwXrlDWmMS12HylhMSi4,455
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- phenoml/construe/errors/bad_request_error.py,sha256=nv0bK4gtOnTon6a2NdVxJxHBje_O_7wIoRtXLZHovUQ,339
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- phenoml/construe/errors/conflict_error.py,sha256=NyA4yoleBcQcrDK2rF79eVs62xclhih2kpEIBlAToow,337
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- phenoml/construe/errors/failed_dependency_error.py,sha256=eXiqG062inkUF7fs2Newhx9uAKReK6fosz29PMD4gVw,345
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