pg-sui 0.2.3__py3-none-any.whl → 1.6.16a3__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (128) hide show
  1. pg_sui-1.6.16a3.dist-info/METADATA +292 -0
  2. pg_sui-1.6.16a3.dist-info/RECORD +81 -0
  3. {pg_sui-0.2.3.dist-info → pg_sui-1.6.16a3.dist-info}/WHEEL +1 -1
  4. pg_sui-1.6.16a3.dist-info/entry_points.txt +4 -0
  5. {pg_sui-0.2.3.dist-info → pg_sui-1.6.16a3.dist-info/licenses}/LICENSE +0 -0
  6. pg_sui-1.6.16a3.dist-info/top_level.txt +1 -0
  7. pgsui/__init__.py +35 -54
  8. pgsui/_version.py +34 -0
  9. pgsui/cli.py +922 -0
  10. pgsui/data_processing/__init__.py +0 -0
  11. pgsui/data_processing/config.py +565 -0
  12. pgsui/data_processing/containers.py +1436 -0
  13. pgsui/data_processing/transformers.py +557 -907
  14. pgsui/{example_data/trees → electron/app}/__init__.py +0 -0
  15. pgsui/electron/app/__main__.py +5 -0
  16. pgsui/electron/app/extra-resources/.gitkeep +1 -0
  17. pgsui/electron/app/icons/icons/1024x1024.png +0 -0
  18. pgsui/electron/app/icons/icons/128x128.png +0 -0
  19. pgsui/electron/app/icons/icons/16x16.png +0 -0
  20. pgsui/electron/app/icons/icons/24x24.png +0 -0
  21. pgsui/electron/app/icons/icons/256x256.png +0 -0
  22. pgsui/electron/app/icons/icons/32x32.png +0 -0
  23. pgsui/electron/app/icons/icons/48x48.png +0 -0
  24. pgsui/electron/app/icons/icons/512x512.png +0 -0
  25. pgsui/electron/app/icons/icons/64x64.png +0 -0
  26. pgsui/electron/app/icons/icons/icon.icns +0 -0
  27. pgsui/electron/app/icons/icons/icon.ico +0 -0
  28. pgsui/electron/app/main.js +227 -0
  29. pgsui/electron/app/package-lock.json +6894 -0
  30. pgsui/electron/app/package.json +51 -0
  31. pgsui/electron/app/preload.js +15 -0
  32. pgsui/electron/app/server.py +157 -0
  33. pgsui/electron/app/ui/logo.png +0 -0
  34. pgsui/electron/app/ui/renderer.js +131 -0
  35. pgsui/electron/app/ui/styles.css +59 -0
  36. pgsui/electron/app/ui/ui_shim.js +72 -0
  37. pgsui/electron/bootstrap.py +43 -0
  38. pgsui/electron/launch.py +57 -0
  39. pgsui/electron/package.json +14 -0
  40. pgsui/example_data/__init__.py +0 -0
  41. pgsui/example_data/phylip_files/__init__.py +0 -0
  42. pgsui/example_data/phylip_files/test.phy +0 -0
  43. pgsui/example_data/popmaps/__init__.py +0 -0
  44. pgsui/example_data/popmaps/{test.popmap → phylogen_nomx.popmap} +185 -99
  45. pgsui/example_data/structure_files/__init__.py +0 -0
  46. pgsui/example_data/structure_files/test.pops.2row.allsites.str +0 -0
  47. pgsui/example_data/vcf_files/phylogen_subset14K.vcf.gz +0 -0
  48. pgsui/example_data/vcf_files/phylogen_subset14K.vcf.gz.tbi +0 -0
  49. pgsui/impute/__init__.py +0 -0
  50. pgsui/impute/deterministic/imputers/allele_freq.py +725 -0
  51. pgsui/impute/deterministic/imputers/mode.py +844 -0
  52. pgsui/impute/deterministic/imputers/nmf.py +221 -0
  53. pgsui/impute/deterministic/imputers/phylo.py +973 -0
  54. pgsui/impute/deterministic/imputers/ref_allele.py +669 -0
  55. pgsui/impute/supervised/__init__.py +0 -0
  56. pgsui/impute/supervised/base.py +343 -0
  57. pgsui/impute/{unsupervised/models/in_development → supervised/imputers}/__init__.py +0 -0
  58. pgsui/impute/supervised/imputers/hist_gradient_boosting.py +317 -0
  59. pgsui/impute/supervised/imputers/random_forest.py +291 -0
  60. pgsui/impute/unsupervised/__init__.py +0 -0
  61. pgsui/impute/unsupervised/base.py +1121 -0
  62. pgsui/impute/unsupervised/callbacks.py +92 -262
  63. {simulation → pgsui/impute/unsupervised/imputers}/__init__.py +0 -0
  64. pgsui/impute/unsupervised/imputers/autoencoder.py +1361 -0
  65. pgsui/impute/unsupervised/imputers/nlpca.py +1666 -0
  66. pgsui/impute/unsupervised/imputers/ubp.py +1660 -0
  67. pgsui/impute/unsupervised/imputers/vae.py +1316 -0
  68. pgsui/impute/unsupervised/loss_functions.py +261 -0
  69. pgsui/impute/unsupervised/models/__init__.py +0 -0
  70. pgsui/impute/unsupervised/models/autoencoder_model.py +215 -567
  71. pgsui/impute/unsupervised/models/nlpca_model.py +155 -394
  72. pgsui/impute/unsupervised/models/ubp_model.py +180 -1106
  73. pgsui/impute/unsupervised/models/vae_model.py +269 -630
  74. pgsui/impute/unsupervised/nn_scorers.py +255 -0
  75. pgsui/utils/__init__.py +0 -0
  76. pgsui/utils/classification_viz.py +608 -0
  77. pgsui/utils/logging_utils.py +22 -0
  78. pgsui/utils/misc.py +35 -480
  79. pgsui/utils/plotting.py +996 -829
  80. pgsui/utils/pretty_metrics.py +290 -0
  81. pgsui/utils/scorers.py +213 -666
  82. pg_sui-0.2.3.dist-info/METADATA +0 -322
  83. pg_sui-0.2.3.dist-info/RECORD +0 -75
  84. pg_sui-0.2.3.dist-info/top_level.txt +0 -3
  85. pgsui/example_data/phylip_files/test_n10.phy +0 -118
  86. pgsui/example_data/phylip_files/test_n100.phy +0 -118
  87. pgsui/example_data/phylip_files/test_n2.phy +0 -118
  88. pgsui/example_data/phylip_files/test_n500.phy +0 -118
  89. pgsui/example_data/structure_files/test.nopops.1row.10sites.str +0 -117
  90. pgsui/example_data/structure_files/test.nopops.2row.100sites.str +0 -234
  91. pgsui/example_data/structure_files/test.nopops.2row.10sites.str +0 -234
  92. pgsui/example_data/structure_files/test.nopops.2row.30sites.str +0 -234
  93. pgsui/example_data/structure_files/test.nopops.2row.allsites.str +0 -234
  94. pgsui/example_data/structure_files/test.pops.1row.10sites.str +0 -117
  95. pgsui/example_data/structure_files/test.pops.2row.10sites.str +0 -234
  96. pgsui/example_data/trees/test.iqtree +0 -376
  97. pgsui/example_data/trees/test.qmat +0 -5
  98. pgsui/example_data/trees/test.rate +0 -2033
  99. pgsui/example_data/trees/test.tre +0 -1
  100. pgsui/example_data/trees/test_n10.rate +0 -19
  101. pgsui/example_data/trees/test_n100.rate +0 -109
  102. pgsui/example_data/trees/test_n500.rate +0 -509
  103. pgsui/example_data/trees/test_siterates.txt +0 -2024
  104. pgsui/example_data/trees/test_siterates_n10.txt +0 -10
  105. pgsui/example_data/trees/test_siterates_n100.txt +0 -100
  106. pgsui/example_data/trees/test_siterates_n500.txt +0 -500
  107. pgsui/example_data/vcf_files/test.vcf +0 -244
  108. pgsui/example_data/vcf_files/test.vcf.gz +0 -0
  109. pgsui/example_data/vcf_files/test.vcf.gz.tbi +0 -0
  110. pgsui/impute/estimators.py +0 -1268
  111. pgsui/impute/impute.py +0 -1463
  112. pgsui/impute/simple_imputers.py +0 -1431
  113. pgsui/impute/supervised/iterative_imputer_fixedparams.py +0 -782
  114. pgsui/impute/supervised/iterative_imputer_gridsearch.py +0 -1024
  115. pgsui/impute/unsupervised/keras_classifiers.py +0 -697
  116. pgsui/impute/unsupervised/models/in_development/cnn_model.py +0 -486
  117. pgsui/impute/unsupervised/neural_network_imputers.py +0 -1440
  118. pgsui/impute/unsupervised/neural_network_methods.py +0 -1395
  119. pgsui/pg_sui.py +0 -261
  120. pgsui/utils/sequence_tools.py +0 -407
  121. simulation/sim_benchmarks.py +0 -333
  122. simulation/sim_treeparams.py +0 -475
  123. test/__init__.py +0 -0
  124. test/pg_sui_simtest.py +0 -215
  125. test/pg_sui_testing.py +0 -523
  126. test/test.py +0 -151
  127. test/test_pgsui.py +0 -374
  128. test/test_tkc.py +0 -185
pgsui/example_data/structure_files/test.nopops.2row.30sites.str DELETED
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105
- ONCO_BX602 1 -9 3 3 3 2 2 4 2 3 2 4 3 3 4 4 4 3 2 2 2 3 -9 1 3 1 2 1 3 1
106
- ONCO_BX602 3 -9 3 3 3 2 2 4 2 3 2 4 3 3 4 4 4 3 2 2 2 3 -9 1 3 1 2 1 4 2
107
- ONKS_BXON61_133 3 2 3 3 3 2 2 4 2 3 2 4 3 3 4 4 4 3 2 2 2 3 3 1 3 1 2 1 3 1
108
- ONKS_BXON61_133 3 2 3 3 3 2 4 4 2 3 2 4 3 3 4 4 4 3 2 2 2 3 3 1 3 1 2 2 3 2
109
- FLFL_BXFL01 3 2 1 3 3 2 2 2 2 3 2 2 3 3 3 4 4 3 2 2 2 3 3 1 3 1 2 1 3 1
110
- FLFL_BXFL01 3 2 3 3 3 2 2 2 2 3 2 2 3 3 3 4 4 3 2 2 2 3 3 1 3 1 2 1 3 1
111
- FLFL_BX683 3 2 1 3 3 2 2 2 2 3 2 2 3 3 3 4 4 3 2 2 2 3 3 1 3 1 2 1 3 1
112
- FLFL_BX683 3 2 3 3 3 2 2 2 2 3 2 2 3 3 3 4 4 3 2 2 2 3 3 1 3 1 2 1 3 1
113
- TTLA_BXTT35_1486 3 -9 3 3 3 2 2 4 2 3 -9 2 3 3 3 4 4 3 -9 2 2 3 3 1 3 1 2 1 3 1
114
- TTLA_BXTT35_1486 3 -9 3 3 3 2 2 4 2 3 -9 2 3 3 3 4 4 3 -9 3 2 3 3 1 3 1 2 1 3 1
115
- TTAR_BX507 3 2 3 3 3 2 2 4 2 3 -9 2 3 3 3 -9 4 3 2 2 2 3 3 1 3 1 2 1 3 1
116
- TTAR_BX507 3 2 3 3 3 2 2 4 2 3 -9 2 3 3 3 -9 4 3 2 2 2 3 3 1 3 1 2 1 3 1
117
- TTTX_BX227 3 2 3 3 3 2 2 4 2 3 2 2 3 3 3 4 4 3 2 2 2 3 3 1 3 1 2 1 3 1
118
- TTTX_BX227 3 2 3 3 3 2 2 4 2 3 2 2 3 3 3 4 4 3 2 3 2 3 3 1 3 1 2 1 3 1
119
- TTTX_BX225 3 4 3 3 3 -9 2 4 2 3 2 2 3 3 3 4 4 3 2 2 2 3 3 1 3 1 2 1 3 1
120
- TTTX_BX225 3 4 3 3 3 -9 2 4 2 3 2 2 3 3 3 4 4 3 2 2 2 3 3 1 3 1 2 1 3 1
121
- TTLA_BXTT34_1482 3 2 3 1 3 2 2 4 2 3 2 2 3 3 3 4 4 3 2 2 1 3 3 1 3 1 2 1 3 -9
122
- TTLA_BXTT34_1482 3 2 3 3 3 2 4 4 2 3 2 2 3 3 3 4 4 3 2 3 2 4 3 1 3 1 2 1 3 -9
123
- TTLA_BXTT36_1491 3 -9 3 3 3 2 2 4 2 3 2 2 3 3 3 4 4 3 2 2 2 3 3 1 3 1 2 1 3 1
124
- TTLA_BXTT36_1491 3 -9 3 3 3 2 2 4 2 3 2 2 3 3 3 4 4 3 2 2 2 3 3 1 3 1 2 1 3 1
125
- TTLA_BXTT37_1492 3 -9 3 1 3 2 2 4 2 3 2 2 3 3 3 4 4 3 2 2 2 4 3 1 3 1 2 1 3 1
126
- TTLA_BXTT37_1492 3 -9 3 1 3 2 2 4 2 3 2 2 3 3 3 4 4 3 2 2 2 4 3 1 3 1 2 1 3 1
127
- TTAR_BX987 3 2 3 3 3 2 2 4 2 -9 2 2 3 3 3 4 4 3 2 2 2 3 3 1 3 1 2 1 3 1
128
- TTAR_BX987 3 2 3 3 3 2 2 4 2 -9 2 2 3 3 3 4 4 3 2 2 2 3 3 1 3 1 2 1 3 1
129
- TTLA_BXTT38_1493 3 2 3 1 3 2 2 4 2 3 2 2 3 3 3 4 4 3 2 2 2 3 3 1 3 1 2 1 3 1
130
- TTLA_BXTT38_1493 3 2 3 3 3 2 4 4 3 3 2 2 3 3 3 4 4 3 2 2 2 3 3 1 3 1 2 1 3 1
131
- TTTX_BX222 3 2 3 1 3 2 2 4 2 3 2 2 3 3 3 4 4 3 2 2 2 3 3 1 3 1 2 1 3 1
132
- TTTX_BX222 3 2 3 3 3 2 4 4 2 3 2 2 3 3 3 4 4 3 2 2 2 3 3 1 3 1 2 1 3 1
133
- TTLA_BX421 3 2 3 1 3 2 2 4 2 -9 2 2 3 3 3 4 4 3 2 2 2 3 3 1 3 1 2 1 3 1
134
- TTLA_BX421 3 2 3 3 3 2 2 4 2 -9 2 2 3 3 3 4 4 3 2 2 2 4 3 1 3 1 2 1 3 1
135
- TTKS_BXTT20_78 3 2 3 3 3 2 2 4 2 3 2 2 3 3 3 4 4 3 2 2 2 -9 3 1 3 1 2 1 3 1
136
- TTKS_BXTT20_78 3 2 3 3 3 2 2 4 2 3 2 2 3 3 3 4 4 3 2 2 2 -9 3 1 3 1 2 1 3 1
137
- TTLA_BXTT13 3 2 3 1 3 2 2 4 2 3 2 -9 1 3 3 4 4 1 2 2 2 3 3 1 3 1 2 1 -9 1
138
- TTLA_BXTT13 3 2 3 1 3 2 2 4 3 3 2 -9 3 3 3 4 4 3 2 2 2 3 3 1 3 1 2 1 -9 1
139
- TTAR_BX984 3 2 3 3 3 2 2 4 2 3 -9 2 3 3 3 4 4 3 2 2 2 3 3 1 3 -9 2 1 -9 1
140
- TTAR_BX984 3 2 3 3 3 2 2 4 2 3 -9 2 3 3 3 4 4 3 2 2 2 3 3 1 3 -9 2 1 -9 1
141
- TTLA_BX422 3 2 3 1 3 2 2 4 2 3 2 2 3 3 3 4 4 3 2 2 2 3 3 1 3 1 2 1 -9 1
142
- TTLA_BX422 3 2 3 3 3 2 2 4 2 3 2 2 3 3 3 4 4 3 2 2 2 3 3 1 3 1 2 1 -9 1
143
- TTLA_BXTT39_1498 3 2 3 3 3 -9 2 4 2 3 2 2 3 3 3 4 4 3 2 3 2 3 3 1 3 1 2 1 3 1
144
- TTLA_BXTT39_1498 3 2 3 3 3 -9 2 4 2 3 2 2 3 3 3 4 4 3 2 3 2 4 3 1 3 1 2 1 3 1
145
- TTTX_BX223 3 2 3 3 3 2 2 4 2 3 2 2 3 3 3 4 4 3 2 3 2 3 3 1 3 1 2 1 3 1
146
- TTTX_BX223 3 2 3 3 3 2 2 4 2 3 2 2 3 3 3 4 4 3 2 3 2 3 3 1 3 1 2 1 3 1
147
- TTTX_BX228 3 2 3 3 3 2 2 4 2 3 2 2 3 3 3 4 4 3 2 2 2 3 3 1 3 1 2 1 3 1
148
- TTTX_BX228 3 2 3 3 3 2 2 4 2 3 2 2 3 3 3 4 4 3 2 2 2 3 3 1 3 1 2 1 3 1
149
- MXMX_BX1195 3 2 3 3 3 2 2 4 2 3 2 2 3 3 3 4 4 3 2 2 2 3 3 1 3 1 2 1 3 1
150
- MXMX_BX1195 3 2 3 3 3 2 2 4 2 3 2 2 3 3 3 4 4 3 4 2 2 3 3 1 3 1 2 1 3 1
151
- MXMX_BX1194 3 2 3 3 3 2 2 4 2 3 2 2 3 3 3 4 4 3 2 2 2 3 3 1 3 1 2 1 3 1
152
- MXMX_BX1194 3 2 3 3 3 2 2 4 2 3 2 2 3 3 3 4 4 3 4 2 2 3 3 1 3 1 2 1 3 1
153
- MXMX_BX1196 3 2 3 3 3 2 2 4 2 3 2 2 3 3 3 4 4 3 2 2 2 3 3 1 3 1 2 1 3 1
154
- MXMX_BX1196 3 2 3 3 3 2 2 4 2 3 2 2 3 3 3 4 4 3 2 2 2 3 3 1 3 1 2 1 3 1
155
- EASC_BXEA43_1307 3 -9 3 3 3 -9 2 4 2 -9 -9 2 3 3 3 4 4 -9 -9 2 2 -9 3 1 3 -9 -9 1 3 1
156
- EASC_BXEA43_1307 3 -9 3 3 3 -9 2 4 2 -9 -9 2 3 3 3 4 4 -9 -9 2 2 -9 3 1 3 -9 -9 1 3 1
157
- EAGA_BXEA49_564 3 2 3 1 3 2 2 4 2 1 2 2 3 3 3 4 4 3 2 2 2 3 3 1 3 1 -9 1 3 1
158
- EAGA_BXEA49_564 3 4 3 3 3 2 2 4 2 3 2 2 3 3 3 4 4 3 2 2 2 3 3 1 3 1 -9 1 3 1
159
- EAGA_BX660 3 -9 3 3 3 2 2 4 2 -9 2 2 3 3 3 4 4 -9 -9 2 2 3 3 1 3 1 2 1 3 1
160
- EAGA_BX660 3 -9 3 3 3 2 2 4 2 -9 2 2 3 3 3 4 4 -9 -9 2 2 3 3 1 3 1 2 1 3 1
161
- EAAL_BXEA27 3 2 3 1 3 -9 2 4 2 3 2 2 3 3 3 2 4 3 2 2 2 3 3 1 3 1 2 1 3 1
162
- EAAL_BXEA27 3 2 3 3 3 -9 2 4 2 3 2 2 3 3 3 4 4 3 2 2 2 4 3 1 4 1 2 1 3 1
163
- EAGA_BXEA35_666 3 2 3 1 3 2 2 4 2 -9 2 2 3 3 3 -9 -9 -9 2 2 2 -9 3 1 3 1 2 1 3 -9
164
- EAGA_BXEA35_666 3 2 3 3 3 2 2 4 2 -9 3 2 3 3 3 -9 -9 -9 2 2 2 -9 3 1 3 1 2 1 3 -9
165
- EASC_BX1108 3 2 3 1 3 2 2 4 2 3 2 2 3 3 3 4 4 3 2 2 2 3 3 1 3 1 2 1 3 1
166
- EASC_BX1108 3 2 3 3 3 2 2 4 2 3 2 2 3 3 3 4 4 3 2 2 2 3 3 1 3 1 2 1 3 1
167
- EAGA_BXEA17 3 2 3 1 3 2 2 4 2 3 2 2 3 3 3 4 4 3 2 2 2 3 3 1 3 1 2 1 3 1
168
- EAGA_BXEA17 3 2 3 3 3 2 2 4 2 3 3 2 3 3 3 4 4 3 2 2 2 3 3 1 3 1 2 1 3 1
169
- EAGA_BXEA34_665 3 2 3 1 3 2 2 4 2 3 2 2 3 3 3 4 4 3 2 2 2 3 3 1 3 1 2 1 3 1
170
- EAGA_BXEA34_665 3 2 3 3 3 2 2 4 2 3 3 2 3 3 3 4 4 3 2 2 2 3 3 1 3 1 2 1 3 1
171
- EASC_BXEA42_1306 3 2 3 3 3 2 2 4 2 3 2 2 3 3 3 4 4 3 2 2 2 3 3 1 3 1 2 1 3 1
172
- EASC_BXEA42_1306 3 2 3 3 3 2 2 4 2 3 2 2 3 3 3 4 4 3 2 2 2 3 3 1 3 1 2 1 3 1
173
- EAVA_BX320 3 -9 3 3 3 2 2 4 2 3 2 2 3 3 3 4 4 3 2 -9 2 3 3 1 3 1 -9 1 3 1
174
- EAVA_BX320 3 -9 3 3 3 2 2 4 2 3 2 2 3 3 3 4 4 3 2 -9 2 3 3 1 3 1 -9 1 3 1
175
- EAGA_BXEA21 3 2 3 3 3 2 2 4 2 3 2 2 3 3 3 4 4 3 2 2 1 3 3 1 3 1 2 1 3 1
176
- EAGA_BXEA21 3 2 3 3 3 2 2 4 2 3 2 2 3 3 3 4 4 3 2 2 2 3 3 1 3 1 2 1 3 1
177
- EATN_BXEA02_36x2 3 2 3 3 3 2 2 4 2 3 2 2 3 3 3 4 2 -9 2 2 2 3 3 1 3 1 2 1 3 1
178
- EATN_BXEA02_36x2 3 2 3 3 3 2 2 4 2 3 2 2 3 3 3 4 4 -9 2 2 2 3 3 1 3 1 2 1 3 1
179
- EAVA_BX101 3 2 3 3 3 2 2 4 2 3 2 2 3 3 3 4 4 3 2 2 2 3 3 1 3 1 2 1 3 1
180
- EAVA_BX101 3 2 3 3 3 2 2 4 2 3 3 2 3 3 3 4 4 3 2 2 2 3 3 1 3 1 2 1 3 1
181
- EASC_BXEA41_1305 3 2 1 1 3 2 2 4 2 -9 2 2 3 3 3 4 -9 3 2 2 2 3 3 1 3 1 2 1 3 1
182
- EASC_BXEA41_1305 3 2 3 3 3 2 2 4 2 -9 2 2 3 3 3 4 -9 3 2 2 2 3 3 1 3 1 2 1 3 1
183
- EAGA_BXEA25 3 2 3 3 3 -9 2 4 -9 -9 -9 2 3 3 3 4 4 3 2 2 2 3 3 1 3 1 2 1 3 1
184
- EAGA_BXEA25 3 2 3 3 3 -9 2 4 -9 -9 -9 2 3 3 3 4 4 3 2 2 2 4 3 1 3 1 2 1 3 1
185
- EAGA_BX346 3 2 3 3 3 2 2 4 2 3 2 2 3 3 3 4 4 3 2 2 2 3 3 1 3 1 2 1 3 1
186
- EAGA_BX346 3 2 3 3 3 2 2 4 2 3 2 2 3 3 3 4 4 3 2 2 2 3 3 1 4 1 2 1 3 1
187
- EAVA_BX321 3 2 3 3 3 2 2 4 2 3 2 2 3 3 3 4 4 3 2 2 2 3 3 1 3 1 2 1 3 1
188
- EAVA_BX321 3 2 3 3 3 2 2 4 2 3 2 2 3 3 3 4 4 3 2 2 2 3 3 1 3 1 2 1 3 1
189
- EAGA_BX472 3 2 3 1 3 2 2 4 2 3 2 2 3 3 3 4 4 3 2 -9 2 3 3 1 3 1 2 1 3 1
190
- EAGA_BX472 3 2 3 3 3 2 2 4 2 3 2 2 3 3 3 4 4 3 2 -9 2 3 3 1 3 1 2 1 3 1
191
- EASC_BXEA40_1304 3 2 3 1 3 2 2 4 2 3 2 2 3 3 3 4 4 3 2 2 2 -9 3 1 3 1 2 1 3 1
192
- EASC_BXEA40_1304 3 2 3 3 3 2 2 4 2 3 2 2 3 3 3 4 4 3 2 2 2 -9 3 1 3 1 2 1 3 1
193
- EASC_BX1115 3 2 3 3 3 2 2 4 -9 3 2 2 3 3 3 4 4 3 2 2 2 3 3 1 3 1 2 1 3 1
194
- EASC_BX1115 3 2 3 3 3 2 2 4 -9 3 2 2 3 3 3 4 4 3 2 2 2 3 3 1 3 1 2 1 3 1
195
- EAGA_BXEA32_662 3 2 3 1 3 2 2 4 2 3 2 2 3 3 3 4 4 3 2 2 2 3 3 1 3 1 2 1 3 1
196
- EAGA_BXEA32_662 3 2 3 1 3 2 2 4 2 3 3 2 3 3 3 4 4 3 2 2 2 3 3 1 3 1 2 1 3 1
197
- EASC_BX1109 3 2 3 3 3 -9 2 4 -9 -9 2 2 3 3 3 4 4 -9 2 2 2 3 3 1 3 1 2 1 3 1
198
- EASC_BX1109 3 2 3 3 3 -9 2 4 -9 -9 2 2 3 3 3 4 4 -9 2 2 2 4 3 1 3 1 2 1 3 1
199
- EASC_BX1110 3 2 3 3 1 2 2 4 2 3 2 2 3 3 3 4 4 3 2 2 2 3 3 1 3 1 -9 1 3 1
200
- EASC_BX1110 3 2 3 3 3 2 2 4 2 3 2 2 3 3 3 4 4 3 2 2 2 3 3 1 3 1 -9 1 3 1
201
- EAGA_BXEA31_659 3 2 3 1 3 2 2 4 2 3 -9 2 3 3 3 4 4 3 2 2 2 3 3 1 3 1 2 1 3 1
202
- EAGA_BXEA31_659 3 2 3 3 3 2 2 4 2 3 -9 2 3 3 3 4 4 3 2 2 2 3 3 1 3 1 2 1 3 1
203
- EASC_BX1112 3 2 3 1 3 2 2 4 2 3 2 2 3 3 3 4 4 3 2 2 2 3 3 1 3 1 2 1 3 1
204
- EASC_BX1112 3 2 3 3 3 2 2 4 2 3 2 2 3 3 3 4 4 3 2 2 2 3 3 1 3 1 2 1 3 1
205
- EAGA_BX301 3 2 3 1 3 2 2 4 2 3 2 2 3 3 3 4 4 3 2 3 2 3 3 1 3 1 2 1 3 1
206
- EAGA_BX301 3 2 3 3 3 2 2 4 2 3 2 2 3 3 3 4 4 3 2 3 2 3 3 1 3 1 2 1 3 1
207
- EAGA_BXEA15_654 3 2 3 1 3 -9 2 4 2 -9 2 2 1 3 3 4 4 3 2 2 2 3 3 1 3 1 2 1 3 1
208
- EAGA_BXEA15_654 3 2 3 3 3 -9 2 4 2 -9 3 2 3 3 3 4 4 3 2 2 2 3 3 1 3 1 2 1 3 1
209
- EASC_BX1114 3 2 3 1 3 2 2 4 2 3 2 2 3 3 3 4 4 3 2 2 2 3 3 1 3 1 2 1 3 1
210
- EASC_BX1114 3 2 3 3 3 2 2 4 2 3 2 2 3 3 3 4 4 3 2 2 2 3 3 1 3 1 2 1 3 1
211
- EAGA_BXEA33_663 3 2 3 3 3 2 2 4 2 3 -9 2 3 3 3 4 -9 3 2 -9 2 3 3 1 3 1 2 1 3 1
212
- EAGA_BXEA33_663 3 2 3 3 3 2 2 4 2 3 -9 2 3 3 3 4 -9 3 2 -9 2 4 3 1 3 1 2 1 3 1
213
- TCAL_BXTC63 3 2 3 3 3 2 2 4 2 3 2 2 3 3 3 4 4 3 2 2 2 3 3 1 3 1 2 1 3 1
214
- TCAL_BXTC63 3 2 3 3 3 2 2 4 2 3 2 2 3 3 3 4 4 3 2 2 2 4 3 1 3 1 2 1 3 1
215
- TCAL_BX612 3 -9 3 3 3 2 2 4 2 -9 2 2 3 3 3 4 4 -9 -9 2 2 3 3 1 3 1 2 1 3 1
216
- TCAL_BX612 3 -9 3 3 3 2 2 4 2 -9 2 2 3 3 3 4 4 -9 -9 2 2 4 3 1 3 1 2 1 3 1
217
- TCAL_BXTC93 3 2 1 3 1 2 2 4 2 -9 2 2 3 3 3 4 4 3 2 2 2 3 3 1 3 1 2 1 3 1
218
- TCAL_BXTC93 3 2 3 3 3 2 2 4 2 -9 2 2 3 3 3 4 4 3 2 2 2 3 3 1 3 1 2 1 3 1
219
- TCAL_BX279 3 2 3 1 3 2 2 4 2 1 2 2 3 3 3 4 4 3 2 2 2 3 3 1 3 1 2 1 3 1
220
- TCAL_BX279 3 2 3 3 3 2 2 4 2 3 2 2 3 3 3 4 4 3 2 2 2 3 3 1 3 1 2 1 3 1
221
- TCAL_BXTC92 3 2 3 1 3 -9 2 4 2 3 2 2 3 3 3 4 4 3 2 2 2 3 3 1 3 1 2 1 3 1
222
- TCAL_BXTC92 3 2 3 3 3 -9 2 4 2 3 2 2 3 3 3 4 4 3 2 2 2 3 3 1 3 1 2 1 3 1
223
- TCAL_BX273 3 2 3 3 3 2 2 4 -9 3 2 2 3 3 3 4 4 3 2 2 2 3 3 1 3 1 2 1 -9 1
224
- TCAL_BX273 3 2 3 3 3 2 2 4 -9 3 3 2 3 3 3 4 4 3 2 2 2 3 3 1 3 1 2 1 -9 1
225
- TCAL_BXTC80 3 2 1 1 3 2 2 4 2 3 2 2 3 3 3 4 4 3 2 2 2 3 3 1 3 1 2 1 3 1
226
- TCAL_BXTC80 3 2 1 3 3 2 2 4 2 3 2 2 3 3 3 4 4 3 2 2 2 3 3 1 3 1 2 1 3 1
227
- TCAL_BXTC110 3 2 3 1 3 2 2 4 2 3 2 2 3 3 3 4 4 3 2 -9 2 3 3 1 3 1 2 1 3 1
228
- TCAL_BXTC110 3 2 3 3 3 2 2 4 2 3 2 2 3 3 3 4 4 3 2 -9 2 3 3 1 3 1 2 1 3 1
229
- TCGA_BX344 3 -9 3 1 3 2 2 4 2 3 2 2 3 3 3 4 4 1 2 2 2 3 3 1 3 1 2 1 3 1
230
- TCGA_BX344 3 -9 3 3 3 2 2 4 2 3 2 2 3 3 3 4 4 3 2 2 2 3 3 1 3 1 2 1 3 1
231
- CHCH_BX1191 3 2 3 3 3 1 2 4 2 3 2 2 3 3 3 4 4 3 2 2 2 3 3 1 3 1 2 1 3 1
232
- CHCH_BX1191 3 2 3 3 3 1 2 4 2 3 2 2 3 3 3 4 4 3 2 2 2 3 3 1 3 1 2 1 3 1
233
- CHCH_BX1193 3 2 3 3 3 1 2 4 2 3 2 2 3 3 3 4 4 3 2 2 2 3 3 1 3 1 2 1 3 1
234
- CHCH_BX1193 3 2 3 3 3 1 2 4 2 3 2 2 3 3 3 4 4 3 2 2 2 3 3 1 3 1 2 1 3 1