partis-bcr 1.0.5__py3-none-any.whl → 1.0.7__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (139) hide show
  1. bin/partis-test.py +4 -1
  2. packages/ham/bcrham +0 -0
  3. {partis_bcr-1.0.5.data → partis_bcr-1.0.7.data}/scripts/partis-test.py +4 -1
  4. {partis_bcr-1.0.5.dist-info → partis_bcr-1.0.7.dist-info}/METADATA +2 -1
  5. {partis_bcr-1.0.5.dist-info → partis_bcr-1.0.7.dist-info}/RECORD +98 -139
  6. python/utils.py +1 -1
  7. test/new-results/test/parameters/simu/hmm/all-mean-mute-freqs.csv +3 -3
  8. test/new-results/test/parameters/simu/hmm/all-mean-n-muted.csv +11 -11
  9. test/new-results/test/parameters/simu/hmm/all-probs.csv +3 -13
  10. test/new-results/test/parameters/simu/hmm/cluster_size.csv +1 -1
  11. test/new-results/test/parameters/simu/hmm/d-mean-mute-freqs.csv +6 -6
  12. test/new-results/test/parameters/simu/hmm/d-mean-n-muted.csv +3 -3
  13. test/new-results/test/parameters/simu/hmm/d_gene-d_3p_del-probs.csv +1 -6
  14. test/new-results/test/parameters/simu/hmm/d_gene-d_5p_del-probs.csv +2 -9
  15. test/new-results/test/parameters/simu/hmm/d_gene-probs.csv +1 -5
  16. test/new-results/test/parameters/simu/hmm/d_gene-vd_insertion-probs.csv +2 -10
  17. test/new-results/test/parameters/simu/hmm/dj_insertion_content.csv +4 -4
  18. test/new-results/test/parameters/simu/hmm/fv_insertion-probs.csv +2 -3
  19. test/new-results/test/parameters/simu/hmm/germline-sets/igh/extras.csv +0 -6
  20. test/new-results/test/parameters/simu/hmm/germline-sets/igh/ighd.fasta +0 -8
  21. test/new-results/test/parameters/simu/hmm/germline-sets/igh/ighj.fasta +0 -2
  22. test/new-results/test/parameters/simu/hmm/germline-sets/igh/ighv.fasta +0 -10
  23. test/new-results/test/parameters/simu/hmm/hmms/IGHD6-13_star_01.yaml +268 -267
  24. test/new-results/test/parameters/simu/hmm/hmms/IGHJ4_star_02.yaml +306 -306
  25. test/new-results/test/parameters/simu/hmm/hmms/IGHJ6_star_02.yaml +284 -284
  26. test/new-results/test/parameters/simu/hmm/hmms/IGHV3-66_star_02.yaml +1191 -1191
  27. test/new-results/test/parameters/simu/hmm/hmms/IGHV3-7_star_05.yaml +2 -2
  28. test/new-results/test/parameters/simu/hmm/j-mean-mute-freqs.csv +5 -5
  29. test/new-results/test/parameters/simu/hmm/j-mean-n-muted.csv +4 -4
  30. test/new-results/test/parameters/simu/hmm/j_gene-dj_insertion-probs.csv +2 -9
  31. test/new-results/test/parameters/simu/hmm/j_gene-j_3p_del-probs.csv +1 -2
  32. test/new-results/test/parameters/simu/hmm/j_gene-j_5p_del-probs.csv +2 -7
  33. test/new-results/test/parameters/simu/hmm/j_gene-probs.csv +1 -2
  34. test/new-results/test/parameters/simu/hmm/jf_insertion-probs.csv +1 -1
  35. test/new-results/test/parameters/simu/hmm/mute-freqs/IGHD6-13_star_01.csv +13 -16
  36. test/new-results/test/parameters/simu/hmm/mute-freqs/IGHJ4_star_02.csv +40 -44
  37. test/new-results/test/parameters/simu/hmm/mute-freqs/IGHJ6_star_02.csv +0 -2
  38. test/new-results/test/parameters/simu/hmm/mute-freqs/IGHV3-66_star_02.csv +291 -293
  39. test/new-results/test/parameters/simu/hmm/seq_content.csv +4 -4
  40. test/new-results/test/parameters/simu/hmm/v-mean-mute-freqs.csv +3 -3
  41. test/new-results/test/parameters/simu/hmm/v-mean-n-muted.csv +7 -7
  42. test/new-results/test/parameters/simu/hmm/v_gene-probs.csv +1 -6
  43. test/new-results/test/parameters/simu/hmm/v_gene-v_3p_del-probs.csv +1 -7
  44. test/new-results/test/parameters/simu/hmm/v_gene-v_5p_del-probs.csv +1 -6
  45. test/new-results/test/parameters/simu/hmm/vd_insertion_content.csv +4 -4
  46. test/new-results/test/parameters/simu/sw/all-mean-mute-freqs.csv +3 -3
  47. test/new-results/test/parameters/simu/sw/all-mean-n-muted.csv +8 -8
  48. test/new-results/test/parameters/simu/sw/all-probs.csv +1 -9
  49. test/new-results/test/parameters/simu/sw/cluster_size.csv +1 -1
  50. test/new-results/test/parameters/simu/sw/d-mean-mute-freqs.csv +5 -5
  51. test/new-results/test/parameters/simu/sw/d-mean-n-muted.csv +3 -3
  52. test/new-results/test/parameters/simu/sw/d_gene-d_3p_del-probs.csv +1 -7
  53. test/new-results/test/parameters/simu/sw/d_gene-d_5p_del-probs.csv +1 -7
  54. test/new-results/test/parameters/simu/sw/d_gene-probs.csv +1 -5
  55. test/new-results/test/parameters/simu/sw/d_gene-vd_insertion-probs.csv +1 -8
  56. test/new-results/test/parameters/simu/sw/dj_insertion_content.csv +4 -4
  57. test/new-results/test/parameters/simu/sw/fv_insertion-probs.csv +1 -1
  58. test/new-results/test/parameters/simu/sw/germline-sets/igh/extras.csv +0 -6
  59. test/new-results/test/parameters/simu/sw/germline-sets/igh/ighd.fasta +0 -8
  60. test/new-results/test/parameters/simu/sw/germline-sets/igh/ighj.fasta +0 -2
  61. test/new-results/test/parameters/simu/sw/germline-sets/igh/ighv.fasta +0 -10
  62. test/new-results/test/parameters/simu/sw/hmms/IGHD6-13_star_01.yaml +268 -267
  63. test/new-results/test/parameters/simu/sw/hmms/IGHJ4_star_02.yaml +306 -306
  64. test/new-results/test/parameters/simu/sw/hmms/IGHJ6_star_02.yaml +22 -22
  65. test/new-results/test/parameters/simu/sw/hmms/IGHV3-66_star_02.yaml +1191 -1191
  66. test/new-results/test/parameters/simu/sw/hmms/IGHV3-7_star_05.yaml +2 -2
  67. test/new-results/test/parameters/simu/sw/j-mean-mute-freqs.csv +4 -4
  68. test/new-results/test/parameters/simu/sw/j-mean-n-muted.csv +3 -3
  69. test/new-results/test/parameters/simu/sw/j_gene-dj_insertion-probs.csv +1 -7
  70. test/new-results/test/parameters/simu/sw/j_gene-j_3p_del-probs.csv +1 -2
  71. test/new-results/test/parameters/simu/sw/j_gene-j_5p_del-probs.csv +1 -7
  72. test/new-results/test/parameters/simu/sw/j_gene-probs.csv +1 -2
  73. test/new-results/test/parameters/simu/sw/jf_insertion-probs.csv +1 -1
  74. test/new-results/test/parameters/simu/sw/mute-freqs/IGHD6-13_star_01.csv +13 -16
  75. test/new-results/test/parameters/simu/sw/mute-freqs/IGHJ4_star_02.csv +40 -48
  76. test/new-results/test/parameters/simu/sw/mute-freqs/IGHV3-66_star_02.csv +291 -293
  77. test/new-results/test/parameters/simu/sw/seq_content.csv +4 -4
  78. test/new-results/test/parameters/simu/sw/v-mean-mute-freqs.csv +3 -3
  79. test/new-results/test/parameters/simu/sw/v-mean-n-muted.csv +7 -7
  80. test/new-results/test/parameters/simu/sw/v_gene-probs.csv +1 -6
  81. test/new-results/test/parameters/simu/sw/v_gene-v_3p_del-probs.csv +1 -7
  82. test/new-results/test/parameters/simu/sw/v_gene-v_5p_del-probs.csv +1 -6
  83. test/new-results/test/parameters/simu/sw/vd_insertion_content.csv +4 -4
  84. test/new-results/test/parameters/simu/sw-cache.yaml +1 -1
  85. test/new-results/test.log +24 -258
  86. test/test.py +4 -1
  87. bin/partis-pip +0 -116
  88. test/new-results/test/parameters/simu/hmm/hmms/IGHD1-20_star_01.yaml +0 -449
  89. test/new-results/test/parameters/simu/hmm/hmms/IGHD3-16_star_02.yaml +0 -870
  90. test/new-results/test/parameters/simu/hmm/hmms/IGHD3-22_star_01.yaml +0 -744
  91. test/new-results/test/parameters/simu/hmm/hmms/IGHD6-19_star_01.yaml +0 -534
  92. test/new-results/test/parameters/simu/hmm/hmms/IGHJ1_star_01.yaml +0 -986
  93. test/new-results/test/parameters/simu/hmm/hmms/IGHV1-18_star_01.yaml +0 -4484
  94. test/new-results/test/parameters/simu/hmm/hmms/IGHV3-23_star_01.yaml +0 -4484
  95. test/new-results/test/parameters/simu/hmm/hmms/IGHV4-4_star_09.yaml +0 -4438
  96. test/new-results/test/parameters/simu/hmm/hmms/IGHV4-61_star_01.yaml +0 -4529
  97. test/new-results/test/parameters/simu/hmm/hmms/IGHV5-51_star_01.yaml +0 -4484
  98. test/new-results/test/parameters/simu/hmm/mute-freqs/IGHD1-20_star_01.csv +0 -9
  99. test/new-results/test/parameters/simu/hmm/mute-freqs/IGHD3-16_star_02.csv +0 -30
  100. test/new-results/test/parameters/simu/hmm/mute-freqs/IGHD3-22_star_01.csv +0 -32
  101. test/new-results/test/parameters/simu/hmm/mute-freqs/IGHD6-19_star_01.csv +0 -22
  102. test/new-results/test/parameters/simu/hmm/mute-freqs/IGHJ1_star_01.csv +0 -50
  103. test/new-results/test/parameters/simu/hmm/mute-freqs/IGHV1-18_star_01.csv +0 -297
  104. test/new-results/test/parameters/simu/hmm/mute-freqs/IGHV3-23_star_01.csv +0 -297
  105. test/new-results/test/parameters/simu/hmm/mute-freqs/IGHV4-4_star_09.csv +0 -291
  106. test/new-results/test/parameters/simu/hmm/mute-freqs/IGHV4-61_star_01.csv +0 -300
  107. test/new-results/test/parameters/simu/hmm/mute-freqs/IGHV5-51_star_01.csv +0 -296
  108. test/new-results/test/parameters/simu/sw/hmms/IGHD1-20_star_01.yaml +0 -449
  109. test/new-results/test/parameters/simu/sw/hmms/IGHD3-16_star_02.yaml +0 -870
  110. test/new-results/test/parameters/simu/sw/hmms/IGHD3-22_star_01.yaml +0 -744
  111. test/new-results/test/parameters/simu/sw/hmms/IGHD6-19_star_01.yaml +0 -534
  112. test/new-results/test/parameters/simu/sw/hmms/IGHJ1_star_01.yaml +0 -986
  113. test/new-results/test/parameters/simu/sw/hmms/IGHV1-18_star_01.yaml +0 -4484
  114. test/new-results/test/parameters/simu/sw/hmms/IGHV3-23_star_01.yaml +0 -4484
  115. test/new-results/test/parameters/simu/sw/hmms/IGHV4-4_star_09.yaml +0 -4438
  116. test/new-results/test/parameters/simu/sw/hmms/IGHV4-61_star_01.yaml +0 -4529
  117. test/new-results/test/parameters/simu/sw/hmms/IGHV5-51_star_01.yaml +0 -4484
  118. test/new-results/test/parameters/simu/sw/mute-freqs/IGHD1-20_star_01.csv +0 -9
  119. test/new-results/test/parameters/simu/sw/mute-freqs/IGHD3-16_star_02.csv +0 -30
  120. test/new-results/test/parameters/simu/sw/mute-freqs/IGHD3-22_star_01.csv +0 -32
  121. test/new-results/test/parameters/simu/sw/mute-freqs/IGHD6-19_star_01.csv +0 -20
  122. test/new-results/test/parameters/simu/sw/mute-freqs/IGHJ1_star_01.csv +0 -50
  123. test/new-results/test/parameters/simu/sw/mute-freqs/IGHV1-18_star_01.csv +0 -297
  124. test/new-results/test/parameters/simu/sw/mute-freqs/IGHV3-23_star_01.csv +0 -297
  125. test/new-results/test/parameters/simu/sw/mute-freqs/IGHV4-4_star_09.csv +0 -291
  126. test/new-results/test/parameters/simu/sw/mute-freqs/IGHV4-61_star_01.csv +0 -300
  127. test/new-results/test/parameters/simu/sw/mute-freqs/IGHV5-51_star_01.csv +0 -296
  128. {partis_bcr-1.0.5.data → partis_bcr-1.0.7.data}/scripts/cf-alleles.py +0 -0
  129. {partis_bcr-1.0.5.data → partis_bcr-1.0.7.data}/scripts/cf-germlines.py +0 -0
  130. {partis_bcr-1.0.5.data → partis_bcr-1.0.7.data}/scripts/compare-plotdirs.py +0 -0
  131. {partis_bcr-1.0.5.data → partis_bcr-1.0.7.data}/scripts/extract-pairing-info.py +0 -0
  132. {partis_bcr-1.0.5.data → partis_bcr-1.0.7.data}/scripts/gctree-run.py +0 -0
  133. {partis_bcr-1.0.5.data → partis_bcr-1.0.7.data}/scripts/get-naive-probabilities.py +0 -0
  134. {partis_bcr-1.0.5.data → partis_bcr-1.0.7.data}/scripts/parse-output.py +0 -0
  135. {partis_bcr-1.0.5.data → partis_bcr-1.0.7.data}/scripts/split-loci.py +0 -0
  136. {partis_bcr-1.0.5.dist-info → partis_bcr-1.0.7.dist-info}/WHEEL +0 -0
  137. {partis_bcr-1.0.5.dist-info → partis_bcr-1.0.7.dist-info}/entry_points.txt +0 -0
  138. {partis_bcr-1.0.5.dist-info → partis_bcr-1.0.7.dist-info}/licenses/COPYING +0 -0
  139. {partis_bcr-1.0.5.dist-info → partis_bcr-1.0.7.dist-info}/top_level.txt +0 -0
test/new-results/test/parameters/simu/hmm/hmms/IGHJ6_star_02.yaml CHANGED
@@ -1,8 +1,8 @@
1
1
  !!python/object:python.hmmwriter.HMM
2
2
  extras:
3
- gene_prob: 0.08333333333333333
4
- overall_mute_freq: 0.012499999999999999
5
- per_gene_mute_freq: 0.11268189142795679
3
+ gene_prob: 0.3
4
+ overall_mute_freq: 0.019000000000000003
5
+ per_gene_mute_freq: 0.1123625967300556
6
6
  name: IGHJ6_star_02
7
7
  states:
8
8
  - !!python/object:python.hmmwriter.State
@@ -10,47 +10,47 @@ states:
10
10
  extras: {}
11
11
  name: init
12
12
  transitions:
13
- IGHJ6_star_02_0: 0.005297187816468022
14
- IGHJ6_star_02_1: 0.005297187816468022
15
- IGHJ6_star_02_10: 0.005297187816468022
16
- IGHJ6_star_02_11: 0.005297187816468022
17
- IGHJ6_star_02_12: 0.005297187816468022
18
- IGHJ6_star_02_13: 0.005297187816468022
19
- IGHJ6_star_02_14: 0.005297187816468022
20
- IGHJ6_star_02_15: 0.005297187816468022
21
- IGHJ6_star_02_16: 0.007945781724702032
22
- IGHJ6_star_02_17: 0.010594375632936043
23
- IGHJ6_star_02_18: 0.009971177066292747
24
- IGHJ6_star_02_19: 0.00934797849964945
25
- IGHJ6_star_02_2: 0.005297187816468022
26
- IGHJ6_star_02_20: 0.008724779933006153
27
- IGHJ6_star_02_21: 0.008101581366362857
28
- IGHJ6_star_02_22: 0.007478382799719559
29
- IGHJ6_star_02_23: 0.006855184233076262
30
- IGHJ6_star_02_24: 0.006231985666432965
31
- IGHJ6_star_02_25: 0.005608787099789668
32
- IGHJ6_star_02_26: 0.0049855885331463725
33
- IGHJ6_star_02_27: 0.004362389966503075
34
- IGHJ6_star_02_28: 0.0037391913998597783
35
- IGHJ6_star_02_29: 0.003115992833216482
36
- IGHJ6_star_02_3: 0.005297187816468022
37
- IGHJ6_star_02_4: 0.005297187816468022
38
- IGHJ6_star_02_5: 0.005297187816468022
39
- IGHJ6_star_02_6: 0.005297187816468022
40
- IGHJ6_star_02_7: 0.005297187816468022
41
- IGHJ6_star_02_8: 0.005297187816468022
42
- IGHJ6_star_02_9: 0.005297187816468022
43
- insert_left_A: 0.09935064935064934
44
- insert_left_C: 0.3331168831168831
45
- insert_left_G: 0.12857142857142856
46
- insert_left_T: 0.2571428571428571
47
- - !!python/object:python.hmmwriter.State
48
- emissions:
49
- probs:
50
- A: 0.8873181085720432
51
- C: 0.037560630475985596
52
- G: 0.037560630475985596
53
- T: 0.037560630475985596
13
+ IGHJ6_star_02_0: 0.005919220055710305
14
+ IGHJ6_star_02_1: 0.005919220055710305
15
+ IGHJ6_star_02_10: 0.005919220055710305
16
+ IGHJ6_star_02_11: 0.005919220055710305
17
+ IGHJ6_star_02_12: 0.005919220055710305
18
+ IGHJ6_star_02_13: 0.005919220055710305
19
+ IGHJ6_star_02_14: 0.005919220055710305
20
+ IGHJ6_star_02_15: 0.005919220055710305
21
+ IGHJ6_star_02_16: 0.005919220055710305
22
+ IGHJ6_star_02_17: 0.017757660167130915
23
+ IGHJ6_star_02_18: 0.01671309192200557
24
+ IGHJ6_star_02_19: 0.01566852367688022
25
+ IGHJ6_star_02_2: 0.005919220055710305
26
+ IGHJ6_star_02_20: 0.014623955431754872
27
+ IGHJ6_star_02_21: 0.013579387186629526
28
+ IGHJ6_star_02_22: 0.01253481894150418
29
+ IGHJ6_star_02_23: 0.011490250696378832
30
+ IGHJ6_star_02_24: 0.010445682451253484
31
+ IGHJ6_star_02_25: 0.009401114206128136
32
+ IGHJ6_star_02_26: 0.008356545961002788
33
+ IGHJ6_star_02_27: 0.00731197771587744
34
+ IGHJ6_star_02_28: 0.006267409470752091
35
+ IGHJ6_star_02_29: 0.005222841225626743
36
+ IGHJ6_star_02_3: 0.005919220055710305
37
+ IGHJ6_star_02_4: 0.005919220055710305
38
+ IGHJ6_star_02_5: 0.005919220055710305
39
+ IGHJ6_star_02_6: 0.005919220055710305
40
+ IGHJ6_star_02_7: 0.005919220055710305
41
+ IGHJ6_star_02_8: 0.005919220055710305
42
+ IGHJ6_star_02_9: 0.005919220055710305
43
+ insert_left_A: 0.12890625
44
+ insert_left_C: 0.1875
45
+ insert_left_G: 0.1875
46
+ insert_left_T: 0.24609375
47
+ - !!python/object:python.hmmwriter.State
48
+ emissions:
49
+ probs:
50
+ A: 0.8876374032699444
51
+ C: 0.037454198910018534
52
+ G: 0.037454198910018534
53
+ T: 0.037454198910018534
54
54
  track: nukes
55
55
  extras:
56
56
  ambiguous_char: N
@@ -58,47 +58,47 @@ states:
58
58
  germline: A
59
59
  name: insert_left_A
60
60
  transitions:
61
- IGHJ6_star_02_0: 0.001954145505465339
62
- IGHJ6_star_02_1: 0.001954145505465339
63
- IGHJ6_star_02_10: 0.001954145505465339
64
- IGHJ6_star_02_11: 0.001954145505465339
65
- IGHJ6_star_02_12: 0.001954145505465339
66
- IGHJ6_star_02_13: 0.001954145505465339
67
- IGHJ6_star_02_14: 0.001954145505465339
68
- IGHJ6_star_02_15: 0.001954145505465339
69
- IGHJ6_star_02_16: 0.0029312182581980083
70
- IGHJ6_star_02_17: 0.003908291010930678
71
- IGHJ6_star_02_18: 0.003678391539699462
72
- IGHJ6_star_02_19: 0.003448492068468245
73
- IGHJ6_star_02_2: 0.001954145505465339
74
- IGHJ6_star_02_20: 0.0032185925972370286
75
- IGHJ6_star_02_21: 0.0029886931260058123
76
- IGHJ6_star_02_22: 0.002758793654774596
77
- IGHJ6_star_02_23: 0.002528894183543379
78
- IGHJ6_star_02_24: 0.0022989947123121628
79
- IGHJ6_star_02_25: 0.002069095241080947
80
- IGHJ6_star_02_26: 0.0018391957698497305
81
- IGHJ6_star_02_27: 0.0016092962986185139
82
- IGHJ6_star_02_28: 0.0013793968273872975
83
- IGHJ6_star_02_29: 0.0011494973561560812
84
- IGHJ6_star_02_3: 0.001954145505465339
85
- IGHJ6_star_02_4: 0.001954145505465339
86
- IGHJ6_star_02_5: 0.001954145505465339
87
- IGHJ6_star_02_6: 0.001954145505465339
88
- IGHJ6_star_02_7: 0.001954145505465339
89
- IGHJ6_star_02_8: 0.001954145505465339
90
- IGHJ6_star_02_9: 0.001954145505465339
91
- insert_left_A: 0.11328397212543553
92
- insert_left_C: 0.37983449477351916
93
- insert_left_G: 0.14660278745644598
94
- insert_left_T: 0.29320557491289195
95
- - !!python/object:python.hmmwriter.State
96
- emissions:
97
- probs:
98
- A: 0.037560630475985596
99
- C: 0.8873181085720432
100
- G: 0.037560630475985596
101
- T: 0.037560630475985596
61
+ IGHJ6_star_02_0: 0.0016615354542344714
62
+ IGHJ6_star_02_1: 0.0016615354542344714
63
+ IGHJ6_star_02_10: 0.0016615354542344714
64
+ IGHJ6_star_02_11: 0.0016615354542344714
65
+ IGHJ6_star_02_12: 0.0016615354542344714
66
+ IGHJ6_star_02_13: 0.0016615354542344714
67
+ IGHJ6_star_02_14: 0.0016615354542344714
68
+ IGHJ6_star_02_15: 0.0016615354542344714
69
+ IGHJ6_star_02_16: 0.0016615354542344714
70
+ IGHJ6_star_02_17: 0.004984606362703414
71
+ IGHJ6_star_02_18: 0.004691394223720861
72
+ IGHJ6_star_02_19: 0.004398182084738307
73
+ IGHJ6_star_02_2: 0.0016615354542344714
74
+ IGHJ6_star_02_20: 0.004104969945755753
75
+ IGHJ6_star_02_21: 0.0038117578067732
76
+ IGHJ6_star_02_22: 0.0035185456677906467
77
+ IGHJ6_star_02_23: 0.003225333528808093
78
+ IGHJ6_star_02_24: 0.0029321213898255392
79
+ IGHJ6_star_02_25: 0.0026389092508429853
80
+ IGHJ6_star_02_26: 0.0023456971118604314
81
+ IGHJ6_star_02_27: 0.002052484972877878
82
+ IGHJ6_star_02_28: 0.0017592728338953235
83
+ IGHJ6_star_02_29: 0.0014660606949127698
84
+ IGHJ6_star_02_3: 0.0016615354542344714
85
+ IGHJ6_star_02_4: 0.0016615354542344714
86
+ IGHJ6_star_02_5: 0.0016615354542344714
87
+ IGHJ6_star_02_6: 0.0016615354542344714
88
+ IGHJ6_star_02_7: 0.0016615354542344714
89
+ IGHJ6_star_02_8: 0.0016615354542344714
90
+ IGHJ6_star_02_9: 0.0016615354542344714
91
+ insert_left_A: 0.15981359649122806
92
+ insert_left_C: 0.2324561403508772
93
+ insert_left_G: 0.2324561403508772
94
+ insert_left_T: 0.3050986842105263
95
+ - !!python/object:python.hmmwriter.State
96
+ emissions:
97
+ probs:
98
+ A: 0.037454198910018534
99
+ C: 0.8876374032699444
100
+ G: 0.037454198910018534
101
+ T: 0.037454198910018534
102
102
  track: nukes
103
103
  extras:
104
104
  ambiguous_char: N
@@ -106,47 +106,47 @@ states:
106
106
  germline: C
107
107
  name: insert_left_C
108
108
  transitions:
109
- IGHJ6_star_02_0: 0.001954145505465339
110
- IGHJ6_star_02_1: 0.001954145505465339
111
- IGHJ6_star_02_10: 0.001954145505465339
112
- IGHJ6_star_02_11: 0.001954145505465339
113
- IGHJ6_star_02_12: 0.001954145505465339
114
- IGHJ6_star_02_13: 0.001954145505465339
115
- IGHJ6_star_02_14: 0.001954145505465339
116
- IGHJ6_star_02_15: 0.001954145505465339
117
- IGHJ6_star_02_16: 0.0029312182581980083
118
- IGHJ6_star_02_17: 0.003908291010930678
119
- IGHJ6_star_02_18: 0.003678391539699462
120
- IGHJ6_star_02_19: 0.003448492068468245
121
- IGHJ6_star_02_2: 0.001954145505465339
122
- IGHJ6_star_02_20: 0.0032185925972370286
123
- IGHJ6_star_02_21: 0.0029886931260058123
124
- IGHJ6_star_02_22: 0.002758793654774596
125
- IGHJ6_star_02_23: 0.002528894183543379
126
- IGHJ6_star_02_24: 0.0022989947123121628
127
- IGHJ6_star_02_25: 0.002069095241080947
128
- IGHJ6_star_02_26: 0.0018391957698497305
129
- IGHJ6_star_02_27: 0.0016092962986185139
130
- IGHJ6_star_02_28: 0.0013793968273872975
131
- IGHJ6_star_02_29: 0.0011494973561560812
132
- IGHJ6_star_02_3: 0.001954145505465339
133
- IGHJ6_star_02_4: 0.001954145505465339
134
- IGHJ6_star_02_5: 0.001954145505465339
135
- IGHJ6_star_02_6: 0.001954145505465339
136
- IGHJ6_star_02_7: 0.001954145505465339
137
- IGHJ6_star_02_8: 0.001954145505465339
138
- IGHJ6_star_02_9: 0.001954145505465339
139
- insert_left_A: 0.11328397212543553
140
- insert_left_C: 0.37983449477351916
141
- insert_left_G: 0.14660278745644598
142
- insert_left_T: 0.29320557491289195
143
- - !!python/object:python.hmmwriter.State
144
- emissions:
145
- probs:
146
- A: 0.037560630475985596
147
- C: 0.037560630475985596
148
- G: 0.8873181085720432
149
- T: 0.037560630475985596
109
+ IGHJ6_star_02_0: 0.0016615354542344714
110
+ IGHJ6_star_02_1: 0.0016615354542344714
111
+ IGHJ6_star_02_10: 0.0016615354542344714
112
+ IGHJ6_star_02_11: 0.0016615354542344714
113
+ IGHJ6_star_02_12: 0.0016615354542344714
114
+ IGHJ6_star_02_13: 0.0016615354542344714
115
+ IGHJ6_star_02_14: 0.0016615354542344714
116
+ IGHJ6_star_02_15: 0.0016615354542344714
117
+ IGHJ6_star_02_16: 0.0016615354542344714
118
+ IGHJ6_star_02_17: 0.004984606362703414
119
+ IGHJ6_star_02_18: 0.004691394223720861
120
+ IGHJ6_star_02_19: 0.004398182084738307
121
+ IGHJ6_star_02_2: 0.0016615354542344714
122
+ IGHJ6_star_02_20: 0.004104969945755753
123
+ IGHJ6_star_02_21: 0.0038117578067732
124
+ IGHJ6_star_02_22: 0.0035185456677906467
125
+ IGHJ6_star_02_23: 0.003225333528808093
126
+ IGHJ6_star_02_24: 0.0029321213898255392
127
+ IGHJ6_star_02_25: 0.0026389092508429853
128
+ IGHJ6_star_02_26: 0.0023456971118604314
129
+ IGHJ6_star_02_27: 0.002052484972877878
130
+ IGHJ6_star_02_28: 0.0017592728338953235
131
+ IGHJ6_star_02_29: 0.0014660606949127698
132
+ IGHJ6_star_02_3: 0.0016615354542344714
133
+ IGHJ6_star_02_4: 0.0016615354542344714
134
+ IGHJ6_star_02_5: 0.0016615354542344714
135
+ IGHJ6_star_02_6: 0.0016615354542344714
136
+ IGHJ6_star_02_7: 0.0016615354542344714
137
+ IGHJ6_star_02_8: 0.0016615354542344714
138
+ IGHJ6_star_02_9: 0.0016615354542344714
139
+ insert_left_A: 0.15981359649122806
140
+ insert_left_C: 0.2324561403508772
141
+ insert_left_G: 0.2324561403508772
142
+ insert_left_T: 0.3050986842105263
143
+ - !!python/object:python.hmmwriter.State
144
+ emissions:
145
+ probs:
146
+ A: 0.037454198910018534
147
+ C: 0.037454198910018534
148
+ G: 0.8876374032699444
149
+ T: 0.037454198910018534
150
150
  track: nukes
151
151
  extras:
152
152
  ambiguous_char: N
@@ -154,47 +154,47 @@ states:
154
154
  germline: G
155
155
  name: insert_left_G
156
156
  transitions:
157
- IGHJ6_star_02_0: 0.001954145505465339
158
- IGHJ6_star_02_1: 0.001954145505465339
159
- IGHJ6_star_02_10: 0.001954145505465339
160
- IGHJ6_star_02_11: 0.001954145505465339
161
- IGHJ6_star_02_12: 0.001954145505465339
162
- IGHJ6_star_02_13: 0.001954145505465339
163
- IGHJ6_star_02_14: 0.001954145505465339
164
- IGHJ6_star_02_15: 0.001954145505465339
165
- IGHJ6_star_02_16: 0.0029312182581980083
166
- IGHJ6_star_02_17: 0.003908291010930678
167
- IGHJ6_star_02_18: 0.003678391539699462
168
- IGHJ6_star_02_19: 0.003448492068468245
169
- IGHJ6_star_02_2: 0.001954145505465339
170
- IGHJ6_star_02_20: 0.0032185925972370286
171
- IGHJ6_star_02_21: 0.0029886931260058123
172
- IGHJ6_star_02_22: 0.002758793654774596
173
- IGHJ6_star_02_23: 0.002528894183543379
174
- IGHJ6_star_02_24: 0.0022989947123121628
175
- IGHJ6_star_02_25: 0.002069095241080947
176
- IGHJ6_star_02_26: 0.0018391957698497305
177
- IGHJ6_star_02_27: 0.0016092962986185139
178
- IGHJ6_star_02_28: 0.0013793968273872975
179
- IGHJ6_star_02_29: 0.0011494973561560812
180
- IGHJ6_star_02_3: 0.001954145505465339
181
- IGHJ6_star_02_4: 0.001954145505465339
182
- IGHJ6_star_02_5: 0.001954145505465339
183
- IGHJ6_star_02_6: 0.001954145505465339
184
- IGHJ6_star_02_7: 0.001954145505465339
185
- IGHJ6_star_02_8: 0.001954145505465339
186
- IGHJ6_star_02_9: 0.001954145505465339
187
- insert_left_A: 0.11328397212543553
188
- insert_left_C: 0.37983449477351916
189
- insert_left_G: 0.14660278745644598
190
- insert_left_T: 0.29320557491289195
191
- - !!python/object:python.hmmwriter.State
192
- emissions:
193
- probs:
194
- A: 0.037560630475985596
195
- C: 0.037560630475985596
196
- G: 0.037560630475985596
197
- T: 0.8873181085720432
157
+ IGHJ6_star_02_0: 0.0016615354542344714
158
+ IGHJ6_star_02_1: 0.0016615354542344714
159
+ IGHJ6_star_02_10: 0.0016615354542344714
160
+ IGHJ6_star_02_11: 0.0016615354542344714
161
+ IGHJ6_star_02_12: 0.0016615354542344714
162
+ IGHJ6_star_02_13: 0.0016615354542344714
163
+ IGHJ6_star_02_14: 0.0016615354542344714
164
+ IGHJ6_star_02_15: 0.0016615354542344714
165
+ IGHJ6_star_02_16: 0.0016615354542344714
166
+ IGHJ6_star_02_17: 0.004984606362703414
167
+ IGHJ6_star_02_18: 0.004691394223720861
168
+ IGHJ6_star_02_19: 0.004398182084738307
169
+ IGHJ6_star_02_2: 0.0016615354542344714
170
+ IGHJ6_star_02_20: 0.004104969945755753
171
+ IGHJ6_star_02_21: 0.0038117578067732
172
+ IGHJ6_star_02_22: 0.0035185456677906467
173
+ IGHJ6_star_02_23: 0.003225333528808093
174
+ IGHJ6_star_02_24: 0.0029321213898255392
175
+ IGHJ6_star_02_25: 0.0026389092508429853
176
+ IGHJ6_star_02_26: 0.0023456971118604314
177
+ IGHJ6_star_02_27: 0.002052484972877878
178
+ IGHJ6_star_02_28: 0.0017592728338953235
179
+ IGHJ6_star_02_29: 0.0014660606949127698
180
+ IGHJ6_star_02_3: 0.0016615354542344714
181
+ IGHJ6_star_02_4: 0.0016615354542344714
182
+ IGHJ6_star_02_5: 0.0016615354542344714
183
+ IGHJ6_star_02_6: 0.0016615354542344714
184
+ IGHJ6_star_02_7: 0.0016615354542344714
185
+ IGHJ6_star_02_8: 0.0016615354542344714
186
+ IGHJ6_star_02_9: 0.0016615354542344714
187
+ insert_left_A: 0.15981359649122806
188
+ insert_left_C: 0.2324561403508772
189
+ insert_left_G: 0.2324561403508772
190
+ insert_left_T: 0.3050986842105263
191
+ - !!python/object:python.hmmwriter.State
192
+ emissions:
193
+ probs:
194
+ A: 0.037454198910018534
195
+ C: 0.037454198910018534
196
+ G: 0.037454198910018534
197
+ T: 0.8876374032699444
198
198
  track: nukes
199
199
  extras:
200
200
  ambiguous_char: N
@@ -202,47 +202,47 @@ states:
202
202
  germline: T
203
203
  name: insert_left_T
204
204
  transitions:
205
- IGHJ6_star_02_0: 0.001954145505465339
206
- IGHJ6_star_02_1: 0.001954145505465339
207
- IGHJ6_star_02_10: 0.001954145505465339
208
- IGHJ6_star_02_11: 0.001954145505465339
209
- IGHJ6_star_02_12: 0.001954145505465339
210
- IGHJ6_star_02_13: 0.001954145505465339
211
- IGHJ6_star_02_14: 0.001954145505465339
212
- IGHJ6_star_02_15: 0.001954145505465339
213
- IGHJ6_star_02_16: 0.0029312182581980083
214
- IGHJ6_star_02_17: 0.003908291010930678
215
- IGHJ6_star_02_18: 0.003678391539699462
216
- IGHJ6_star_02_19: 0.003448492068468245
217
- IGHJ6_star_02_2: 0.001954145505465339
218
- IGHJ6_star_02_20: 0.0032185925972370286
219
- IGHJ6_star_02_21: 0.0029886931260058123
220
- IGHJ6_star_02_22: 0.002758793654774596
221
- IGHJ6_star_02_23: 0.002528894183543379
222
- IGHJ6_star_02_24: 0.0022989947123121628
223
- IGHJ6_star_02_25: 0.002069095241080947
224
- IGHJ6_star_02_26: 0.0018391957698497305
225
- IGHJ6_star_02_27: 0.0016092962986185139
226
- IGHJ6_star_02_28: 0.0013793968273872975
227
- IGHJ6_star_02_29: 0.0011494973561560812
228
- IGHJ6_star_02_3: 0.001954145505465339
229
- IGHJ6_star_02_4: 0.001954145505465339
230
- IGHJ6_star_02_5: 0.001954145505465339
231
- IGHJ6_star_02_6: 0.001954145505465339
232
- IGHJ6_star_02_7: 0.001954145505465339
233
- IGHJ6_star_02_8: 0.001954145505465339
234
- IGHJ6_star_02_9: 0.001954145505465339
235
- insert_left_A: 0.11328397212543553
236
- insert_left_C: 0.37983449477351916
237
- insert_left_G: 0.14660278745644598
238
- insert_left_T: 0.29320557491289195
239
- - !!python/object:python.hmmwriter.State
240
- emissions:
241
- probs:
242
- A: 0.8873181085720432
243
- C: 0.037560630475985596
244
- G: 0.037560630475985596
245
- T: 0.037560630475985596
205
+ IGHJ6_star_02_0: 0.0016615354542344714
206
+ IGHJ6_star_02_1: 0.0016615354542344714
207
+ IGHJ6_star_02_10: 0.0016615354542344714
208
+ IGHJ6_star_02_11: 0.0016615354542344714
209
+ IGHJ6_star_02_12: 0.0016615354542344714
210
+ IGHJ6_star_02_13: 0.0016615354542344714
211
+ IGHJ6_star_02_14: 0.0016615354542344714
212
+ IGHJ6_star_02_15: 0.0016615354542344714
213
+ IGHJ6_star_02_16: 0.0016615354542344714
214
+ IGHJ6_star_02_17: 0.004984606362703414
215
+ IGHJ6_star_02_18: 0.004691394223720861
216
+ IGHJ6_star_02_19: 0.004398182084738307
217
+ IGHJ6_star_02_2: 0.0016615354542344714
218
+ IGHJ6_star_02_20: 0.004104969945755753
219
+ IGHJ6_star_02_21: 0.0038117578067732
220
+ IGHJ6_star_02_22: 0.0035185456677906467
221
+ IGHJ6_star_02_23: 0.003225333528808093
222
+ IGHJ6_star_02_24: 0.0029321213898255392
223
+ IGHJ6_star_02_25: 0.0026389092508429853
224
+ IGHJ6_star_02_26: 0.0023456971118604314
225
+ IGHJ6_star_02_27: 0.002052484972877878
226
+ IGHJ6_star_02_28: 0.0017592728338953235
227
+ IGHJ6_star_02_29: 0.0014660606949127698
228
+ IGHJ6_star_02_3: 0.0016615354542344714
229
+ IGHJ6_star_02_4: 0.0016615354542344714
230
+ IGHJ6_star_02_5: 0.0016615354542344714
231
+ IGHJ6_star_02_6: 0.0016615354542344714
232
+ IGHJ6_star_02_7: 0.0016615354542344714
233
+ IGHJ6_star_02_8: 0.0016615354542344714
234
+ IGHJ6_star_02_9: 0.0016615354542344714
235
+ insert_left_A: 0.15981359649122806
236
+ insert_left_C: 0.2324561403508772
237
+ insert_left_G: 0.2324561403508772
238
+ insert_left_T: 0.3050986842105263
239
+ - !!python/object:python.hmmwriter.State
240
+ emissions:
241
+ probs:
242
+ A: 0.8876374032699444
243
+ C: 0.03745419891001853
244
+ G: 0.03745419891001853
245
+ T: 0.03745419891001853
246
246
  track: nukes
247
247
  extras:
248
248
  ambiguous_char: N
@@ -254,10 +254,10 @@ states:
254
254
  - !!python/object:python.hmmwriter.State
255
255
  emissions:
256
256
  probs:
257
- A: 0.037349265618852975
258
- C: 0.037349265618852975
259
- G: 0.037349265618852975
260
- T: 0.887952203143441
257
+ A: 0.03724815563118427
258
+ C: 0.03724815563118427
259
+ G: 0.03724815563118427
260
+ T: 0.8882555331064472
261
261
  track: nukes
262
262
  extras:
263
263
  ambiguous_char: N
@@ -269,10 +269,10 @@ states:
269
269
  - !!python/object:python.hmmwriter.State
270
270
  emissions:
271
271
  probs:
272
- A: 0.03713790076172037
273
- C: 0.03713790076172037
274
- G: 0.03713790076172037
275
- T: 0.8885862977148389
272
+ A: 0.03704211235235001
273
+ C: 0.03704211235235001
274
+ G: 0.03704211235235001
275
+ T: 0.88887366294295
276
276
  track: nukes
277
277
  extras:
278
278
  ambiguous_char: N
@@ -284,10 +284,10 @@ states:
284
284
  - !!python/object:python.hmmwriter.State
285
285
  emissions:
286
286
  probs:
287
- A: 0.8892203922862367
288
- C: 0.036926535904587755
289
- G: 0.036926535904587755
290
- T: 0.036926535904587755
287
+ A: 0.8894917927794528
288
+ C: 0.03683606907351575
289
+ G: 0.03683606907351575
290
+ T: 0.03683606907351575
291
291
  track: nukes
292
292
  extras:
293
293
  ambiguous_char: N
@@ -299,10 +299,10 @@ states:
299
299
  - !!python/object:python.hmmwriter.State
300
300
  emissions:
301
301
  probs:
302
- A: 0.03671517104745514
303
- C: 0.8898544868576346
304
- G: 0.03671517104745514
305
- T: 0.03671517104745514
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+ A: 0.03663002579468149
303
+ C: 0.8901099226159556
304
+ G: 0.03663002579468149
305
+ T: 0.03663002579468149
306
306
  track: nukes
307
307
  extras:
308
308
  ambiguous_char: N
@@ -314,10 +314,10 @@ states:
314
314
  - !!python/object:python.hmmwriter.State
315
315
  emissions:
316
316
  probs:
317
- A: 0.03650380619032252
318
- C: 0.03650380619032252
319
- G: 0.03650380619032252
320
- T: 0.8904885814290324
317
+ A: 0.036423982515847234
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+ C: 0.036423982515847234
319
+ G: 0.036423982515847234
320
+ T: 0.8907280524524583
321
321
  track: nukes
322
322
  extras:
323
323
  ambiguous_char: N
@@ -329,10 +329,10 @@ states:
329
329
  - !!python/object:python.hmmwriter.State
330
330
  emissions:
331
331
  probs:
332
- A: 0.8911226760004303
333
- C: 0.036292441333189915
334
- G: 0.036292441333189915
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- T: 0.036292441333189915
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+ A: 0.8913461822889611
333
+ C: 0.03621793923701297
334
+ G: 0.03621793923701297
335
+ T: 0.03621793923701297
336
336
  track: nukes
337
337
  extras:
338
338
  ambiguous_char: N
@@ -344,10 +344,10 @@ states:
344
344
  - !!python/object:python.hmmwriter.State
345
345
  emissions:
346
346
  probs:
347
- A: 0.0360810764760573
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- C: 0.8917567705718281
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- G: 0.0360810764760573
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- T: 0.0360810764760573
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+ A: 0.03601189595817871
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+ C: 0.8919643121254639
349
+ G: 0.03601189595817871
350
+ T: 0.03601189595817871
351
351
  track: nukes
352
352
  extras:
353
353
  ambiguous_char: N
@@ -359,10 +359,10 @@ states:
359
359
  - !!python/object:python.hmmwriter.State
360
360
  emissions:
361
361
  probs:
362
- A: 0.03586971161892469
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- C: 0.03586971161892469
364
- G: 0.03586971161892469
365
- T: 0.892390865143226
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+ A: 0.03580585267934445
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+ C: 0.03580585267934445
364
+ G: 0.03580585267934445
365
+ T: 0.8925824419619667
366
366
  track: nukes
367
367
  extras:
368
368
  ambiguous_char: N
@@ -374,10 +374,10 @@ states:
374
374
  - !!python/object:python.hmmwriter.State
375
375
  emissions:
376
376
  probs:
377
- A: 0.8930249597146238
378
- C: 0.035658346761792074
379
- G: 0.035658346761792074
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- T: 0.035658346761792074
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+ A: 0.8932005717984695
378
+ C: 0.03559980940051019
379
+ G: 0.03559980940051019
380
+ T: 0.03559980940051019
381
381
  track: nukes
382
382
  extras:
383
383
  ambiguous_char: N
@@ -389,10 +389,10 @@ states:
389
389
  - !!python/object:python.hmmwriter.State
390
390
  emissions:
391
391
  probs:
392
- A: 0.03544698190465946
393
- C: 0.8936590542860217
394
- G: 0.03544698190465946
395
- T: 0.03544698190465946
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+ A: 0.035393766121675926
393
+ C: 0.8938187016349722
394
+ G: 0.035393766121675926
395
+ T: 0.035393766121675926
396
396
  track: nukes
397
397
  extras:
398
398
  ambiguous_char: N
@@ -404,10 +404,10 @@ states:
404
404
  - !!python/object:python.hmmwriter.State
405
405
  emissions:
406
406
  probs:
407
- A: 0.035235617047526854
408
- C: 0.035235617047526854
409
- G: 0.035235617047526854
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- T: 0.8942931488574194
407
+ A: 0.035187722842841676
408
+ C: 0.035187722842841676
409
+ G: 0.035187722842841676
410
+ T: 0.894436831471475
411
411
  track: nukes
412
412
  extras:
413
413
  ambiguous_char: N
@@ -419,10 +419,10 @@ states:
419
419
  - !!python/object:python.hmmwriter.State
420
420
  emissions:
421
421
  probs:
422
- A: 0.8949272434288172
423
- C: 0.03502425219039424
424
- G: 0.03502425219039424
425
- T: 0.03502425219039424
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+ A: 0.8950549613079778
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+ C: 0.03498167956400741
424
+ G: 0.03498167956400741
425
+ T: 0.03498167956400741
426
426
  track: nukes
427
427
  extras:
428
428
  ambiguous_char: N
@@ -434,10 +434,10 @@ states:
434
434
  - !!python/object:python.hmmwriter.State
435
435
  emissions:
436
436
  probs:
437
- A: 0.03481288733326163
438
- C: 0.8955613380002151
439
- G: 0.03481288733326163
440
- T: 0.03481288733326163
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+ A: 0.034775636285173155
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+ C: 0.8956730911444806
439
+ G: 0.034775636285173155
440
+ T: 0.034775636285173155
441
441
  track: nukes
442
442
  extras:
443
443
  ambiguous_char: N
@@ -449,10 +449,10 @@ states:
449
449
  - !!python/object:python.hmmwriter.State
450
450
  emissions:
451
451
  probs:
452
- A: 0.03460152247612901
453
- C: 0.03460152247612901
454
- G: 0.03460152247612901
455
- T: 0.8961954325716129
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+ A: 0.03456959300633889
453
+ C: 0.03456959300633889
454
+ G: 0.03456959300633889
455
+ T: 0.8962912209809833
456
456
  track: nukes
457
457
  extras:
458
458
  ambiguous_char: N
@@ -464,10 +464,10 @@ states:
464
464
  - !!python/object:python.hmmwriter.State
465
465
  emissions:
466
466
  probs:
467
- A: 0.8911178526671796
468
- C: 0.036294049110940155
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- G: 0.036294049110940155
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- T: 0.036294049110940155
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+ A: 0.8969093508174861
468
+ C: 0.03436354972750463
469
+ G: 0.03436354972750463
470
+ T: 0.03436354972750463
471
471
  track: nukes
472
472
  extras:
473
473
  ambiguous_char: N
@@ -479,10 +479,10 @@ states:
479
479
  - !!python/object:python.hmmwriter.State
480
480
  emissions:
481
481
  probs:
482
- A: 0.037512126095197114
483
- C: 0.8874636217144086
484
- G: 0.037512126095197114
485
- T: 0.037512126095197114
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+ A: 0.03415750644867037
483
+ C: 0.8975274806539889
484
+ G: 0.03415750644867037
485
+ T: 0.03415750644867037
486
486
  track: nukes
487
487
  extras:
488
488
  ambiguous_char: N
@@ -494,10 +494,10 @@ states:
494
494
  - !!python/object:python.hmmwriter.State
495
495
  emissions:
496
496
  probs:
497
- A: 0.03865088757061616
498
- C: 0.03865088757061616
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- G: 0.8840473372881515
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- T: 0.03865088757061616
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+ A: 0.038634922835721106
498
+ C: 0.038634922835721106
499
+ G: 0.8840952314928366
500
+ T: 0.038634922835721106
501
501
  track: nukes
502
502
  extras:
503
503
  ambiguous_char: N
@@ -509,10 +509,10 @@ states:
509
509
  - !!python/object:python.hmmwriter.State
510
510
  emissions:
511
511
  probs:
512
- A: 0.038715020340888556
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- C: 0.038715020340888556
514
- G: 0.8838549389773344
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- T: 0.038715020340888556
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+ A: 0.038704377184291844
513
+ C: 0.038704377184291844
514
+ G: 0.8838868684471245
515
+ T: 0.038704377184291844
516
516
  track: nukes
517
517
  extras:
518
518
  ambiguous_char: N
@@ -524,10 +524,10 @@ states:
524
524
  - !!python/object:python.hmmwriter.State
525
525
  emissions:
526
526
  probs:
527
- A: 0.03877915311116094
528
- C: 0.03877915311116094
529
- G: 0.03877915311116094
530
- T: 0.8836625406665172
527
+ A: 0.038773831532862596
528
+ C: 0.038773831532862596
529
+ G: 0.038773831532862596
530
+ T: 0.8836785054014122
531
531
  track: nukes
532
532
  extras:
533
533
  ambiguous_char: N