partis-bcr 1.0.5__py3-none-any.whl → 1.0.7__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (139) hide show
  1. bin/partis-test.py +4 -1
  2. packages/ham/bcrham +0 -0
  3. {partis_bcr-1.0.5.data → partis_bcr-1.0.7.data}/scripts/partis-test.py +4 -1
  4. {partis_bcr-1.0.5.dist-info → partis_bcr-1.0.7.dist-info}/METADATA +2 -1
  5. {partis_bcr-1.0.5.dist-info → partis_bcr-1.0.7.dist-info}/RECORD +98 -139
  6. python/utils.py +1 -1
  7. test/new-results/test/parameters/simu/hmm/all-mean-mute-freqs.csv +3 -3
  8. test/new-results/test/parameters/simu/hmm/all-mean-n-muted.csv +11 -11
  9. test/new-results/test/parameters/simu/hmm/all-probs.csv +3 -13
  10. test/new-results/test/parameters/simu/hmm/cluster_size.csv +1 -1
  11. test/new-results/test/parameters/simu/hmm/d-mean-mute-freqs.csv +6 -6
  12. test/new-results/test/parameters/simu/hmm/d-mean-n-muted.csv +3 -3
  13. test/new-results/test/parameters/simu/hmm/d_gene-d_3p_del-probs.csv +1 -6
  14. test/new-results/test/parameters/simu/hmm/d_gene-d_5p_del-probs.csv +2 -9
  15. test/new-results/test/parameters/simu/hmm/d_gene-probs.csv +1 -5
  16. test/new-results/test/parameters/simu/hmm/d_gene-vd_insertion-probs.csv +2 -10
  17. test/new-results/test/parameters/simu/hmm/dj_insertion_content.csv +4 -4
  18. test/new-results/test/parameters/simu/hmm/fv_insertion-probs.csv +2 -3
  19. test/new-results/test/parameters/simu/hmm/germline-sets/igh/extras.csv +0 -6
  20. test/new-results/test/parameters/simu/hmm/germline-sets/igh/ighd.fasta +0 -8
  21. test/new-results/test/parameters/simu/hmm/germline-sets/igh/ighj.fasta +0 -2
  22. test/new-results/test/parameters/simu/hmm/germline-sets/igh/ighv.fasta +0 -10
  23. test/new-results/test/parameters/simu/hmm/hmms/IGHD6-13_star_01.yaml +268 -267
  24. test/new-results/test/parameters/simu/hmm/hmms/IGHJ4_star_02.yaml +306 -306
  25. test/new-results/test/parameters/simu/hmm/hmms/IGHJ6_star_02.yaml +284 -284
  26. test/new-results/test/parameters/simu/hmm/hmms/IGHV3-66_star_02.yaml +1191 -1191
  27. test/new-results/test/parameters/simu/hmm/hmms/IGHV3-7_star_05.yaml +2 -2
  28. test/new-results/test/parameters/simu/hmm/j-mean-mute-freqs.csv +5 -5
  29. test/new-results/test/parameters/simu/hmm/j-mean-n-muted.csv +4 -4
  30. test/new-results/test/parameters/simu/hmm/j_gene-dj_insertion-probs.csv +2 -9
  31. test/new-results/test/parameters/simu/hmm/j_gene-j_3p_del-probs.csv +1 -2
  32. test/new-results/test/parameters/simu/hmm/j_gene-j_5p_del-probs.csv +2 -7
  33. test/new-results/test/parameters/simu/hmm/j_gene-probs.csv +1 -2
  34. test/new-results/test/parameters/simu/hmm/jf_insertion-probs.csv +1 -1
  35. test/new-results/test/parameters/simu/hmm/mute-freqs/IGHD6-13_star_01.csv +13 -16
  36. test/new-results/test/parameters/simu/hmm/mute-freqs/IGHJ4_star_02.csv +40 -44
  37. test/new-results/test/parameters/simu/hmm/mute-freqs/IGHJ6_star_02.csv +0 -2
  38. test/new-results/test/parameters/simu/hmm/mute-freqs/IGHV3-66_star_02.csv +291 -293
  39. test/new-results/test/parameters/simu/hmm/seq_content.csv +4 -4
  40. test/new-results/test/parameters/simu/hmm/v-mean-mute-freqs.csv +3 -3
  41. test/new-results/test/parameters/simu/hmm/v-mean-n-muted.csv +7 -7
  42. test/new-results/test/parameters/simu/hmm/v_gene-probs.csv +1 -6
  43. test/new-results/test/parameters/simu/hmm/v_gene-v_3p_del-probs.csv +1 -7
  44. test/new-results/test/parameters/simu/hmm/v_gene-v_5p_del-probs.csv +1 -6
  45. test/new-results/test/parameters/simu/hmm/vd_insertion_content.csv +4 -4
  46. test/new-results/test/parameters/simu/sw/all-mean-mute-freqs.csv +3 -3
  47. test/new-results/test/parameters/simu/sw/all-mean-n-muted.csv +8 -8
  48. test/new-results/test/parameters/simu/sw/all-probs.csv +1 -9
  49. test/new-results/test/parameters/simu/sw/cluster_size.csv +1 -1
  50. test/new-results/test/parameters/simu/sw/d-mean-mute-freqs.csv +5 -5
  51. test/new-results/test/parameters/simu/sw/d-mean-n-muted.csv +3 -3
  52. test/new-results/test/parameters/simu/sw/d_gene-d_3p_del-probs.csv +1 -7
  53. test/new-results/test/parameters/simu/sw/d_gene-d_5p_del-probs.csv +1 -7
  54. test/new-results/test/parameters/simu/sw/d_gene-probs.csv +1 -5
  55. test/new-results/test/parameters/simu/sw/d_gene-vd_insertion-probs.csv +1 -8
  56. test/new-results/test/parameters/simu/sw/dj_insertion_content.csv +4 -4
  57. test/new-results/test/parameters/simu/sw/fv_insertion-probs.csv +1 -1
  58. test/new-results/test/parameters/simu/sw/germline-sets/igh/extras.csv +0 -6
  59. test/new-results/test/parameters/simu/sw/germline-sets/igh/ighd.fasta +0 -8
  60. test/new-results/test/parameters/simu/sw/germline-sets/igh/ighj.fasta +0 -2
  61. test/new-results/test/parameters/simu/sw/germline-sets/igh/ighv.fasta +0 -10
  62. test/new-results/test/parameters/simu/sw/hmms/IGHD6-13_star_01.yaml +268 -267
  63. test/new-results/test/parameters/simu/sw/hmms/IGHJ4_star_02.yaml +306 -306
  64. test/new-results/test/parameters/simu/sw/hmms/IGHJ6_star_02.yaml +22 -22
  65. test/new-results/test/parameters/simu/sw/hmms/IGHV3-66_star_02.yaml +1191 -1191
  66. test/new-results/test/parameters/simu/sw/hmms/IGHV3-7_star_05.yaml +2 -2
  67. test/new-results/test/parameters/simu/sw/j-mean-mute-freqs.csv +4 -4
  68. test/new-results/test/parameters/simu/sw/j-mean-n-muted.csv +3 -3
  69. test/new-results/test/parameters/simu/sw/j_gene-dj_insertion-probs.csv +1 -7
  70. test/new-results/test/parameters/simu/sw/j_gene-j_3p_del-probs.csv +1 -2
  71. test/new-results/test/parameters/simu/sw/j_gene-j_5p_del-probs.csv +1 -7
  72. test/new-results/test/parameters/simu/sw/j_gene-probs.csv +1 -2
  73. test/new-results/test/parameters/simu/sw/jf_insertion-probs.csv +1 -1
  74. test/new-results/test/parameters/simu/sw/mute-freqs/IGHD6-13_star_01.csv +13 -16
  75. test/new-results/test/parameters/simu/sw/mute-freqs/IGHJ4_star_02.csv +40 -48
  76. test/new-results/test/parameters/simu/sw/mute-freqs/IGHV3-66_star_02.csv +291 -293
  77. test/new-results/test/parameters/simu/sw/seq_content.csv +4 -4
  78. test/new-results/test/parameters/simu/sw/v-mean-mute-freqs.csv +3 -3
  79. test/new-results/test/parameters/simu/sw/v-mean-n-muted.csv +7 -7
  80. test/new-results/test/parameters/simu/sw/v_gene-probs.csv +1 -6
  81. test/new-results/test/parameters/simu/sw/v_gene-v_3p_del-probs.csv +1 -7
  82. test/new-results/test/parameters/simu/sw/v_gene-v_5p_del-probs.csv +1 -6
  83. test/new-results/test/parameters/simu/sw/vd_insertion_content.csv +4 -4
  84. test/new-results/test/parameters/simu/sw-cache.yaml +1 -1
  85. test/new-results/test.log +24 -258
  86. test/test.py +4 -1
  87. bin/partis-pip +0 -116
  88. test/new-results/test/parameters/simu/hmm/hmms/IGHD1-20_star_01.yaml +0 -449
  89. test/new-results/test/parameters/simu/hmm/hmms/IGHD3-16_star_02.yaml +0 -870
  90. test/new-results/test/parameters/simu/hmm/hmms/IGHD3-22_star_01.yaml +0 -744
  91. test/new-results/test/parameters/simu/hmm/hmms/IGHD6-19_star_01.yaml +0 -534
  92. test/new-results/test/parameters/simu/hmm/hmms/IGHJ1_star_01.yaml +0 -986
  93. test/new-results/test/parameters/simu/hmm/hmms/IGHV1-18_star_01.yaml +0 -4484
  94. test/new-results/test/parameters/simu/hmm/hmms/IGHV3-23_star_01.yaml +0 -4484
  95. test/new-results/test/parameters/simu/hmm/hmms/IGHV4-4_star_09.yaml +0 -4438
  96. test/new-results/test/parameters/simu/hmm/hmms/IGHV4-61_star_01.yaml +0 -4529
  97. test/new-results/test/parameters/simu/hmm/hmms/IGHV5-51_star_01.yaml +0 -4484
  98. test/new-results/test/parameters/simu/hmm/mute-freqs/IGHD1-20_star_01.csv +0 -9
  99. test/new-results/test/parameters/simu/hmm/mute-freqs/IGHD3-16_star_02.csv +0 -30
  100. test/new-results/test/parameters/simu/hmm/mute-freqs/IGHD3-22_star_01.csv +0 -32
  101. test/new-results/test/parameters/simu/hmm/mute-freqs/IGHD6-19_star_01.csv +0 -22
  102. test/new-results/test/parameters/simu/hmm/mute-freqs/IGHJ1_star_01.csv +0 -50
  103. test/new-results/test/parameters/simu/hmm/mute-freqs/IGHV1-18_star_01.csv +0 -297
  104. test/new-results/test/parameters/simu/hmm/mute-freqs/IGHV3-23_star_01.csv +0 -297
  105. test/new-results/test/parameters/simu/hmm/mute-freqs/IGHV4-4_star_09.csv +0 -291
  106. test/new-results/test/parameters/simu/hmm/mute-freqs/IGHV4-61_star_01.csv +0 -300
  107. test/new-results/test/parameters/simu/hmm/mute-freqs/IGHV5-51_star_01.csv +0 -296
  108. test/new-results/test/parameters/simu/sw/hmms/IGHD1-20_star_01.yaml +0 -449
  109. test/new-results/test/parameters/simu/sw/hmms/IGHD3-16_star_02.yaml +0 -870
  110. test/new-results/test/parameters/simu/sw/hmms/IGHD3-22_star_01.yaml +0 -744
  111. test/new-results/test/parameters/simu/sw/hmms/IGHD6-19_star_01.yaml +0 -534
  112. test/new-results/test/parameters/simu/sw/hmms/IGHJ1_star_01.yaml +0 -986
  113. test/new-results/test/parameters/simu/sw/hmms/IGHV1-18_star_01.yaml +0 -4484
  114. test/new-results/test/parameters/simu/sw/hmms/IGHV3-23_star_01.yaml +0 -4484
  115. test/new-results/test/parameters/simu/sw/hmms/IGHV4-4_star_09.yaml +0 -4438
  116. test/new-results/test/parameters/simu/sw/hmms/IGHV4-61_star_01.yaml +0 -4529
  117. test/new-results/test/parameters/simu/sw/hmms/IGHV5-51_star_01.yaml +0 -4484
  118. test/new-results/test/parameters/simu/sw/mute-freqs/IGHD1-20_star_01.csv +0 -9
  119. test/new-results/test/parameters/simu/sw/mute-freqs/IGHD3-16_star_02.csv +0 -30
  120. test/new-results/test/parameters/simu/sw/mute-freqs/IGHD3-22_star_01.csv +0 -32
  121. test/new-results/test/parameters/simu/sw/mute-freqs/IGHD6-19_star_01.csv +0 -20
  122. test/new-results/test/parameters/simu/sw/mute-freqs/IGHJ1_star_01.csv +0 -50
  123. test/new-results/test/parameters/simu/sw/mute-freqs/IGHV1-18_star_01.csv +0 -297
  124. test/new-results/test/parameters/simu/sw/mute-freqs/IGHV3-23_star_01.csv +0 -297
  125. test/new-results/test/parameters/simu/sw/mute-freqs/IGHV4-4_star_09.csv +0 -291
  126. test/new-results/test/parameters/simu/sw/mute-freqs/IGHV4-61_star_01.csv +0 -300
  127. test/new-results/test/parameters/simu/sw/mute-freqs/IGHV5-51_star_01.csv +0 -296
  128. {partis_bcr-1.0.5.data → partis_bcr-1.0.7.data}/scripts/cf-alleles.py +0 -0
  129. {partis_bcr-1.0.5.data → partis_bcr-1.0.7.data}/scripts/cf-germlines.py +0 -0
  130. {partis_bcr-1.0.5.data → partis_bcr-1.0.7.data}/scripts/compare-plotdirs.py +0 -0
  131. {partis_bcr-1.0.5.data → partis_bcr-1.0.7.data}/scripts/extract-pairing-info.py +0 -0
  132. {partis_bcr-1.0.5.data → partis_bcr-1.0.7.data}/scripts/gctree-run.py +0 -0
  133. {partis_bcr-1.0.5.data → partis_bcr-1.0.7.data}/scripts/get-naive-probabilities.py +0 -0
  134. {partis_bcr-1.0.5.data → partis_bcr-1.0.7.data}/scripts/parse-output.py +0 -0
  135. {partis_bcr-1.0.5.data → partis_bcr-1.0.7.data}/scripts/split-loci.py +0 -0
  136. {partis_bcr-1.0.5.dist-info → partis_bcr-1.0.7.dist-info}/WHEEL +0 -0
  137. {partis_bcr-1.0.5.dist-info → partis_bcr-1.0.7.dist-info}/entry_points.txt +0 -0
  138. {partis_bcr-1.0.5.dist-info → partis_bcr-1.0.7.dist-info}/licenses/COPYING +0 -0
  139. {partis_bcr-1.0.5.dist-info → partis_bcr-1.0.7.dist-info}/top_level.txt +0 -0
test/new-results/test/parameters/simu/sw/hmms/IGHD3-16_star_02.yaml DELETED
@@ -1,870 +0,0 @@
1
- !!python/object:python.hmmwriter.HMM
2
- extras:
3
- gene_prob: 0.05555555555555555
4
- overall_mute_freq: 0.012222222222222223
5
- per_gene_mute_freq: 0.11103967181732298
6
- name: IGHD3-16_star_02
7
- states:
8
- - !!python/object:python.hmmwriter.State
9
- emissions: null
10
- extras: {}
11
- name: init
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- transitions:
13
- IGHD3-16_star_02_0: 0.019736842105263157
14
- IGHD3-16_star_02_1: 0.019736842105263157
15
- IGHD3-16_star_02_10: 0.029605263157894735
16
- IGHD3-16_star_02_11: 0.024671052631578948
17
- IGHD3-16_star_02_12: 0.019736842105263157
18
- IGHD3-16_star_02_13: 0.014802631578947368
19
- IGHD3-16_star_02_14: 0.009868421052631578
20
- IGHD3-16_star_02_15: 0.004934210526315789
21
- IGHD3-16_star_02_16: 0.019736842105263157
22
- IGHD3-16_star_02_17: 0.019736842105263157
23
- IGHD3-16_star_02_18: 0.019736842105263157
24
- IGHD3-16_star_02_19: 0.019736842105263157
25
- IGHD3-16_star_02_2: 0.019736842105263157
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- IGHD3-16_star_02_20: 0.019736842105263157
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- IGHD3-16_star_02_21: 0.019736842105263157
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- IGHD3-16_star_02_22: 0.019736842105263157
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- IGHD3-16_star_02_23: 0.019736842105263157
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- IGHD3-16_star_02_24: 0.019736842105263157
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- IGHD3-16_star_02_25: 0.019736842105263157
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- IGHD3-16_star_02_26: 0.019736842105263157
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- IGHD3-16_star_02_27: 0.019736842105263157
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- IGHD3-16_star_02_28: 0.019736842105263157
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- IGHD3-16_star_02_29: 0.019736842105263157
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- IGHD3-16_star_02_3: 0.019736842105263157
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- IGHD3-16_star_02_30: 0.019736842105263157
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- IGHD3-16_star_02_31: 0.019736842105263157
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- IGHD3-16_star_02_32: 0.019736842105263157
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- IGHD3-16_star_02_33: 0.019736842105263157
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- IGHD3-16_star_02_34: 0.019736842105263157
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- IGHD3-16_star_02_35: 0.019736842105263157
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- IGHD3-16_star_02_36: 0.019736842105263157
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- IGHD3-16_star_02_4: 0.019736842105263157
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- IGHD3-16_star_02_5: 0.019736842105263157
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- IGHD3-16_star_02_6: 0.019736842105263157
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- IGHD3-16_star_02_7: 0.019736842105263157
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- IGHD3-16_star_02_8: 0.039473684210526314
49
- IGHD3-16_star_02_9: 0.03453947368421052
50
- insert_left_A: 0.03103448275862069
51
- insert_left_C: 0.1103448275862069
52
- insert_left_G: 0.04310344827586207
53
- insert_left_T: 0.06551724137931035
54
- - !!python/object:python.hmmwriter.State
55
- emissions:
56
- probs:
57
- A: 0.888960328182677
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- C: 0.03701322393910766
59
- G: 0.03701322393910766
60
- T: 0.03701322393910766
61
- track: nukes
62
- extras:
63
- ambiguous_char: N
64
- ambiguous_emission_prob: 0.25
65
- germline: A
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- name: insert_left_A
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- transitions:
68
- IGHD3-16_star_02_0: 0.019736842105263157
69
- IGHD3-16_star_02_1: 0.019736842105263157
70
- IGHD3-16_star_02_10: 0.029605263157894735
71
- IGHD3-16_star_02_11: 0.024671052631578948
72
- IGHD3-16_star_02_12: 0.019736842105263157
73
- IGHD3-16_star_02_13: 0.014802631578947368
74
- IGHD3-16_star_02_14: 0.009868421052631578
75
- IGHD3-16_star_02_15: 0.004934210526315789
76
- IGHD3-16_star_02_16: 0.019736842105263157
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- IGHD3-16_star_02_17: 0.019736842105263157
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- IGHD3-16_star_02_18: 0.019736842105263157
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- IGHD3-16_star_02_19: 0.019736842105263157
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- IGHD3-16_star_02_2: 0.019736842105263157
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- IGHD3-16_star_02_20: 0.019736842105263157
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- IGHD3-16_star_02_21: 0.019736842105263157
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- IGHD3-16_star_02_22: 0.019736842105263157
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- IGHD3-16_star_02_23: 0.019736842105263157
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- IGHD3-16_star_02_24: 0.019736842105263157
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- IGHD3-16_star_02_25: 0.019736842105263157
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- IGHD3-16_star_02_26: 0.019736842105263157
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- IGHD3-16_star_02_27: 0.019736842105263157
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- IGHD3-16_star_02_28: 0.019736842105263157
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- IGHD3-16_star_02_29: 0.019736842105263157
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- IGHD3-16_star_02_3: 0.019736842105263157
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- IGHD3-16_star_02_30: 0.019736842105263157
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- IGHD3-16_star_02_31: 0.019736842105263157
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- IGHD3-16_star_02_32: 0.019736842105263157
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- IGHD3-16_star_02_33: 0.019736842105263157
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- IGHD3-16_star_02_34: 0.019736842105263157
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- IGHD3-16_star_02_35: 0.019736842105263157
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- IGHD3-16_star_02_36: 0.019736842105263157
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- IGHD3-16_star_02_4: 0.019736842105263157
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- IGHD3-16_star_02_5: 0.019736842105263157
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- IGHD3-16_star_02_6: 0.019736842105263157
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- IGHD3-16_star_02_7: 0.019736842105263157
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- IGHD3-16_star_02_8: 0.039473684210526314
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- IGHD3-16_star_02_9: 0.03453947368421052
105
- insert_left_A: 0.03103448275862069
106
- insert_left_C: 0.1103448275862069
107
- insert_left_G: 0.04310344827586207
108
- insert_left_T: 0.06551724137931035
109
- - !!python/object:python.hmmwriter.State
110
- emissions:
111
- probs:
112
- A: 0.03701322393910766
113
- C: 0.888960328182677
114
- G: 0.03701322393910766
115
- T: 0.03701322393910766
116
- track: nukes
117
- extras:
118
- ambiguous_char: N
119
- ambiguous_emission_prob: 0.25
120
- germline: C
121
- name: insert_left_C
122
- transitions:
123
- IGHD3-16_star_02_0: 0.019736842105263157
124
- IGHD3-16_star_02_1: 0.019736842105263157
125
- IGHD3-16_star_02_10: 0.029605263157894735
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- IGHD3-16_star_02_11: 0.024671052631578948
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- IGHD3-16_star_02_12: 0.019736842105263157
128
- IGHD3-16_star_02_13: 0.014802631578947368
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- IGHD3-16_star_02_14: 0.009868421052631578
130
- IGHD3-16_star_02_15: 0.004934210526315789
131
- IGHD3-16_star_02_16: 0.019736842105263157
132
- IGHD3-16_star_02_17: 0.019736842105263157
133
- IGHD3-16_star_02_18: 0.019736842105263157
134
- IGHD3-16_star_02_19: 0.019736842105263157
135
- IGHD3-16_star_02_2: 0.019736842105263157
136
- IGHD3-16_star_02_20: 0.019736842105263157
137
- IGHD3-16_star_02_21: 0.019736842105263157
138
- IGHD3-16_star_02_22: 0.019736842105263157
139
- IGHD3-16_star_02_23: 0.019736842105263157
140
- IGHD3-16_star_02_24: 0.019736842105263157
141
- IGHD3-16_star_02_25: 0.019736842105263157
142
- IGHD3-16_star_02_26: 0.019736842105263157
143
- IGHD3-16_star_02_27: 0.019736842105263157
144
- IGHD3-16_star_02_28: 0.019736842105263157
145
- IGHD3-16_star_02_29: 0.019736842105263157
146
- IGHD3-16_star_02_3: 0.019736842105263157
147
- IGHD3-16_star_02_30: 0.019736842105263157
148
- IGHD3-16_star_02_31: 0.019736842105263157
149
- IGHD3-16_star_02_32: 0.019736842105263157
150
- IGHD3-16_star_02_33: 0.019736842105263157
151
- IGHD3-16_star_02_34: 0.019736842105263157
152
- IGHD3-16_star_02_35: 0.019736842105263157
153
- IGHD3-16_star_02_36: 0.019736842105263157
154
- IGHD3-16_star_02_4: 0.019736842105263157
155
- IGHD3-16_star_02_5: 0.019736842105263157
156
- IGHD3-16_star_02_6: 0.019736842105263157
157
- IGHD3-16_star_02_7: 0.019736842105263157
158
- IGHD3-16_star_02_8: 0.039473684210526314
159
- IGHD3-16_star_02_9: 0.03453947368421052
160
- insert_left_A: 0.03103448275862069
161
- insert_left_C: 0.1103448275862069
162
- insert_left_G: 0.04310344827586207
163
- insert_left_T: 0.06551724137931035
164
- - !!python/object:python.hmmwriter.State
165
- emissions:
166
- probs:
167
- A: 0.03701322393910766
168
- C: 0.03701322393910766
169
- G: 0.888960328182677
170
- T: 0.03701322393910766
171
- track: nukes
172
- extras:
173
- ambiguous_char: N
174
- ambiguous_emission_prob: 0.25
175
- germline: G
176
- name: insert_left_G
177
- transitions:
178
- IGHD3-16_star_02_0: 0.019736842105263157
179
- IGHD3-16_star_02_1: 0.019736842105263157
180
- IGHD3-16_star_02_10: 0.029605263157894735
181
- IGHD3-16_star_02_11: 0.024671052631578948
182
- IGHD3-16_star_02_12: 0.019736842105263157
183
- IGHD3-16_star_02_13: 0.014802631578947368
184
- IGHD3-16_star_02_14: 0.009868421052631578
185
- IGHD3-16_star_02_15: 0.004934210526315789
186
- IGHD3-16_star_02_16: 0.019736842105263157
187
- IGHD3-16_star_02_17: 0.019736842105263157
188
- IGHD3-16_star_02_18: 0.019736842105263157
189
- IGHD3-16_star_02_19: 0.019736842105263157
190
- IGHD3-16_star_02_2: 0.019736842105263157
191
- IGHD3-16_star_02_20: 0.019736842105263157
192
- IGHD3-16_star_02_21: 0.019736842105263157
193
- IGHD3-16_star_02_22: 0.019736842105263157
194
- IGHD3-16_star_02_23: 0.019736842105263157
195
- IGHD3-16_star_02_24: 0.019736842105263157
196
- IGHD3-16_star_02_25: 0.019736842105263157
197
- IGHD3-16_star_02_26: 0.019736842105263157
198
- IGHD3-16_star_02_27: 0.019736842105263157
199
- IGHD3-16_star_02_28: 0.019736842105263157
200
- IGHD3-16_star_02_29: 0.019736842105263157
201
- IGHD3-16_star_02_3: 0.019736842105263157
202
- IGHD3-16_star_02_30: 0.019736842105263157
203
- IGHD3-16_star_02_31: 0.019736842105263157
204
- IGHD3-16_star_02_32: 0.019736842105263157
205
- IGHD3-16_star_02_33: 0.019736842105263157
206
- IGHD3-16_star_02_34: 0.019736842105263157
207
- IGHD3-16_star_02_35: 0.019736842105263157
208
- IGHD3-16_star_02_36: 0.019736842105263157
209
- IGHD3-16_star_02_4: 0.019736842105263157
210
- IGHD3-16_star_02_5: 0.019736842105263157
211
- IGHD3-16_star_02_6: 0.019736842105263157
212
- IGHD3-16_star_02_7: 0.019736842105263157
213
- IGHD3-16_star_02_8: 0.039473684210526314
214
- IGHD3-16_star_02_9: 0.03453947368421052
215
- insert_left_A: 0.03103448275862069
216
- insert_left_C: 0.1103448275862069
217
- insert_left_G: 0.04310344827586207
218
- insert_left_T: 0.06551724137931035
219
- - !!python/object:python.hmmwriter.State
220
- emissions:
221
- probs:
222
- A: 0.03701322393910766
223
- C: 0.03701322393910766
224
- G: 0.03701322393910766
225
- T: 0.888960328182677
226
- track: nukes
227
- extras:
228
- ambiguous_char: N
229
- ambiguous_emission_prob: 0.25
230
- germline: T
231
- name: insert_left_T
232
- transitions:
233
- IGHD3-16_star_02_0: 0.019736842105263157
234
- IGHD3-16_star_02_1: 0.019736842105263157
235
- IGHD3-16_star_02_10: 0.029605263157894735
236
- IGHD3-16_star_02_11: 0.024671052631578948
237
- IGHD3-16_star_02_12: 0.019736842105263157
238
- IGHD3-16_star_02_13: 0.014802631578947368
239
- IGHD3-16_star_02_14: 0.009868421052631578
240
- IGHD3-16_star_02_15: 0.004934210526315789
241
- IGHD3-16_star_02_16: 0.019736842105263157
242
- IGHD3-16_star_02_17: 0.019736842105263157
243
- IGHD3-16_star_02_18: 0.019736842105263157
244
- IGHD3-16_star_02_19: 0.019736842105263157
245
- IGHD3-16_star_02_2: 0.019736842105263157
246
- IGHD3-16_star_02_20: 0.019736842105263157
247
- IGHD3-16_star_02_21: 0.019736842105263157
248
- IGHD3-16_star_02_22: 0.019736842105263157
249
- IGHD3-16_star_02_23: 0.019736842105263157
250
- IGHD3-16_star_02_24: 0.019736842105263157
251
- IGHD3-16_star_02_25: 0.019736842105263157
252
- IGHD3-16_star_02_26: 0.019736842105263157
253
- IGHD3-16_star_02_27: 0.019736842105263157
254
- IGHD3-16_star_02_28: 0.019736842105263157
255
- IGHD3-16_star_02_29: 0.019736842105263157
256
- IGHD3-16_star_02_3: 0.019736842105263157
257
- IGHD3-16_star_02_30: 0.019736842105263157
258
- IGHD3-16_star_02_31: 0.019736842105263157
259
- IGHD3-16_star_02_32: 0.019736842105263157
260
- IGHD3-16_star_02_33: 0.019736842105263157
261
- IGHD3-16_star_02_34: 0.019736842105263157
262
- IGHD3-16_star_02_35: 0.019736842105263157
263
- IGHD3-16_star_02_36: 0.019736842105263157
264
- IGHD3-16_star_02_4: 0.019736842105263157
265
- IGHD3-16_star_02_5: 0.019736842105263157
266
- IGHD3-16_star_02_6: 0.019736842105263157
267
- IGHD3-16_star_02_7: 0.019736842105263157
268
- IGHD3-16_star_02_8: 0.039473684210526314
269
- IGHD3-16_star_02_9: 0.03453947368421052
270
- insert_left_A: 0.03103448275862069
271
- insert_left_C: 0.1103448275862069
272
- insert_left_G: 0.04310344827586207
273
- insert_left_T: 0.06551724137931035
274
- - !!python/object:python.hmmwriter.State
275
- emissions:
276
- probs:
277
- A: 0.03701322393910766
278
- C: 0.03701322393910766
279
- G: 0.888960328182677
280
- T: 0.03701322393910766
281
- track: nukes
282
- extras:
283
- ambiguous_char: N
284
- ambiguous_emission_prob: 0.25
285
- germline: G
286
- name: IGHD3-16_star_02_0
287
- transitions:
288
- IGHD3-16_star_02_1: 0.9736842105263158
289
- end: 0.02631578947368421
290
- - !!python/object:python.hmmwriter.State
291
- emissions:
292
- probs:
293
- A: 0.03660434720513273
294
- C: 0.03660434720513273
295
- G: 0.03660434720513273
296
- T: 0.8901869583846018
297
- track: nukes
298
- extras:
299
- ambiguous_char: N
300
- ambiguous_emission_prob: 0.25
301
- germline: T
302
- name: IGHD3-16_star_02_1
303
- transitions:
304
- IGHD3-16_star_02_2: 0.9736842105263158
305
- end: 0.02631578947368421
306
- - !!python/object:python.hmmwriter.State
307
- emissions:
308
- probs:
309
- A: 0.8914135885865265
310
- C: 0.03619547047115781
311
- G: 0.03619547047115781
312
- T: 0.03619547047115781
313
- track: nukes
314
- extras:
315
- ambiguous_char: N
316
- ambiguous_emission_prob: 0.25
317
- germline: A
318
- name: IGHD3-16_star_02_2
319
- transitions:
320
- IGHD3-16_star_02_3: 0.9736842105263158
321
- end: 0.02631578947368421
322
- - !!python/object:python.hmmwriter.State
323
- emissions:
324
- probs:
325
- A: 0.03578659373718288
326
- C: 0.03578659373718288
327
- G: 0.03578659373718288
328
- T: 0.8926402187884513
329
- track: nukes
330
- extras:
331
- ambiguous_char: N
332
- ambiguous_emission_prob: 0.25
333
- germline: T
334
- name: IGHD3-16_star_02_3
335
- transitions:
336
- IGHD3-16_star_02_4: 0.9736842105263158
337
- end: 0.02631578947368421
338
- - !!python/object:python.hmmwriter.State
339
- emissions:
340
- probs:
341
- A: 0.03537771700320796
342
- C: 0.03537771700320796
343
- G: 0.03537771700320796
344
- T: 0.8938668489903762
345
- track: nukes
346
- extras:
347
- ambiguous_char: N
348
- ambiguous_emission_prob: 0.25
349
- germline: T
350
- name: IGHD3-16_star_02_4
351
- transitions:
352
- IGHD3-16_star_02_5: 0.9736842105263158
353
- end: 0.02631578947368421
354
- - !!python/object:python.hmmwriter.State
355
- emissions:
356
- probs:
357
- A: 0.8950934791923009
358
- C: 0.03496884026923303
359
- G: 0.03496884026923303
360
- T: 0.03496884026923303
361
- track: nukes
362
- extras:
363
- ambiguous_char: N
364
- ambiguous_emission_prob: 0.25
365
- germline: A
366
- name: IGHD3-16_star_02_5
367
- transitions:
368
- IGHD3-16_star_02_6: 0.9736842105263158
369
- end: 0.02631578947368421
370
- - !!python/object:python.hmmwriter.State
371
- emissions:
372
- probs:
373
- A: 0.034559963535258115
374
- C: 0.034559963535258115
375
- G: 0.034559963535258115
376
- T: 0.8963201093942257
377
- track: nukes
378
- extras:
379
- ambiguous_char: N
380
- ambiguous_emission_prob: 0.25
381
- germline: T
382
- name: IGHD3-16_star_02_6
383
- transitions:
384
- IGHD3-16_star_02_7: 0.9736842105263158
385
- end: 0.02631578947368421
386
- - !!python/object:python.hmmwriter.State
387
- emissions:
388
- probs:
389
- A: 0.03415108680128318
390
- C: 0.03415108680128318
391
- G: 0.8975467395961505
392
- T: 0.03415108680128318
393
- track: nukes
394
- extras:
395
- ambiguous_char: N
396
- ambiguous_emission_prob: 0.25
397
- germline: G
398
- name: IGHD3-16_star_02_7
399
- transitions:
400
- IGHD3-16_star_02_8: 0.9736842105263158
401
- end: 0.02631578947368421
402
- - !!python/object:python.hmmwriter.State
403
- emissions:
404
- probs:
405
- A: 0.8862532822198086
406
- C: 0.037915572593397145
407
- G: 0.037915572593397145
408
- T: 0.037915572593397145
409
- track: nukes
410
- extras:
411
- ambiguous_char: N
412
- ambiguous_emission_prob: 0.25
413
- germline: A
414
- name: IGHD3-16_star_02_8
415
- transitions:
416
- IGHD3-16_star_02_9: 0.9736842105263158
417
- end: 0.02631578947368421
418
- - !!python/object:python.hmmwriter.State
419
- emissions:
420
- probs:
421
- A: 0.038028366175183334
422
- C: 0.038028366175183334
423
- G: 0.038028366175183334
424
- T: 0.88591490147445
425
- track: nukes
426
- extras:
427
- ambiguous_char: N
428
- ambiguous_emission_prob: 0.25
429
- germline: T
430
- name: IGHD3-16_star_02_9
431
- transitions:
432
- IGHD3-16_star_02_10: 0.9736842105263158
433
- end: 0.02631578947368421
434
- - !!python/object:python.hmmwriter.State
435
- emissions:
436
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437
- A: 0.038028366175183334
438
- C: 0.038028366175183334
439
- G: 0.038028366175183334
440
- T: 0.88591490147445
441
- track: nukes
442
- extras:
443
- ambiguous_char: N
444
- ambiguous_emission_prob: 0.25
445
- germline: T
446
- name: IGHD3-16_star_02_10
447
- transitions:
448
- IGHD3-16_star_02_11: 0.9736842105263158
449
- end: 0.02631578947368421
450
- - !!python/object:python.hmmwriter.State
451
- emissions:
452
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453
- A: 0.88591490147445
454
- C: 0.038028366175183334
455
- G: 0.038028366175183334
456
- T: 0.038028366175183334
457
- track: nukes
458
- extras:
459
- ambiguous_char: N
460
- ambiguous_emission_prob: 0.25
461
- germline: A
462
- name: IGHD3-16_star_02_11
463
- transitions:
464
- IGHD3-16_star_02_12: 0.9736842105263158
465
- end: 0.02631578947368421
466
- - !!python/object:python.hmmwriter.State
467
- emissions:
468
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469
- A: 0.038028366175183334
470
- C: 0.88591490147445
471
- G: 0.038028366175183334
472
- T: 0.038028366175183334
473
- track: nukes
474
- extras:
475
- ambiguous_char: N
476
- ambiguous_emission_prob: 0.25
477
- germline: C
478
- name: IGHD3-16_star_02_12
479
- transitions:
480
- IGHD3-16_star_02_13: 0.9736842105263158
481
- end: 0.02631578947368421
482
- - !!python/object:python.hmmwriter.State
483
- emissions:
484
- probs:
485
- A: 0.038028366175183334
486
- C: 0.038028366175183334
487
- G: 0.88591490147445
488
- T: 0.038028366175183334
489
- track: nukes
490
- extras:
491
- ambiguous_char: N
492
- ambiguous_emission_prob: 0.25
493
- germline: G
494
- name: IGHD3-16_star_02_13
495
- transitions:
496
- IGHD3-16_star_02_14: 0.9736842105263158
497
- end: 0.02631578947368421
498
- - !!python/object:python.hmmwriter.State
499
- emissions:
500
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501
- A: 0.038028366175183334
502
- C: 0.038028366175183334
503
- G: 0.038028366175183334
504
- T: 0.88591490147445
505
- track: nukes
506
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507
- ambiguous_char: N
508
- ambiguous_emission_prob: 0.25
509
- germline: T
510
- name: IGHD3-16_star_02_14
511
- transitions:
512
- IGHD3-16_star_02_15: 0.9736842105263158
513
- end: 0.02631578947368421
514
- - !!python/object:python.hmmwriter.State
515
- emissions:
516
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517
- A: 0.038028366175183334
518
- C: 0.038028366175183334
519
- G: 0.038028366175183334
520
- T: 0.88591490147445
521
- track: nukes
522
- extras:
523
- ambiguous_char: N
524
- ambiguous_emission_prob: 0.25
525
- germline: T
526
- name: IGHD3-16_star_02_15
527
- transitions:
528
- IGHD3-16_star_02_16: 0.9736842105263158
529
- end: 0.02631578947368421
530
- - !!python/object:python.hmmwriter.State
531
- emissions:
532
- probs:
533
- A: 0.038028366175183334
534
- C: 0.038028366175183334
535
- G: 0.038028366175183334
536
- T: 0.88591490147445
537
- track: nukes
538
- extras:
539
- ambiguous_char: N
540
- ambiguous_emission_prob: 0.25
541
- germline: T
542
- name: IGHD3-16_star_02_16
543
- transitions:
544
- IGHD3-16_star_02_17: 0.9736842105263158
545
- end: 0.02631578947368421
546
- - !!python/object:python.hmmwriter.State
547
- emissions:
548
- probs:
549
- A: 0.038028366175183334
550
- C: 0.038028366175183334
551
- G: 0.88591490147445
552
- T: 0.038028366175183334
553
- track: nukes
554
- extras:
555
- ambiguous_char: N
556
- ambiguous_emission_prob: 0.25
557
- germline: G
558
- name: IGHD3-16_star_02_17
559
- transitions:
560
- IGHD3-16_star_02_18: 0.9736842105263158
561
- end: 0.02631578947368421
562
- - !!python/object:python.hmmwriter.State
563
- emissions:
564
- probs:
565
- A: 0.038028366175183334
566
- C: 0.038028366175183334
567
- G: 0.88591490147445
568
- T: 0.038028366175183334
569
- track: nukes
570
- extras:
571
- ambiguous_char: N
572
- ambiguous_emission_prob: 0.25
573
- germline: G
574
- name: IGHD3-16_star_02_18
575
- transitions:
576
- IGHD3-16_star_02_19: 0.9736842105263158
577
- end: 0.02631578947368421
578
- - !!python/object:python.hmmwriter.State
579
- emissions:
580
- probs:
581
- A: 0.038028366175183334
582
- C: 0.038028366175183334
583
- G: 0.88591490147445
584
- T: 0.038028366175183334
585
- track: nukes
586
- extras:
587
- ambiguous_char: N
588
- ambiguous_emission_prob: 0.25
589
- germline: G
590
- name: IGHD3-16_star_02_19
591
- transitions:
592
- IGHD3-16_star_02_20: 0.9736842105263158
593
- end: 0.02631578947368421
594
- - !!python/object:python.hmmwriter.State
595
- emissions:
596
- probs:
597
- A: 0.038028366175183334
598
- C: 0.038028366175183334
599
- G: 0.88591490147445
600
- T: 0.038028366175183334
601
- track: nukes
602
- extras:
603
- ambiguous_char: N
604
- ambiguous_emission_prob: 0.25
605
- germline: G
606
- name: IGHD3-16_star_02_20
607
- transitions:
608
- IGHD3-16_star_02_21: 0.9736842105263158
609
- end: 0.02631578947368421
610
- - !!python/object:python.hmmwriter.State
611
- emissions:
612
- probs:
613
- A: 0.038028366175183334
614
- C: 0.038028366175183334
615
- G: 0.88591490147445
616
- T: 0.038028366175183334
617
- track: nukes
618
- extras:
619
- ambiguous_char: N
620
- ambiguous_emission_prob: 0.25
621
- germline: G
622
- name: IGHD3-16_star_02_21
623
- transitions:
624
- IGHD3-16_star_02_22: 0.9736842105263158
625
- end: 0.02631578947368421
626
- - !!python/object:python.hmmwriter.State
627
- emissions:
628
- probs:
629
- A: 0.88591490147445
630
- C: 0.038028366175183334
631
- G: 0.038028366175183334
632
- T: 0.038028366175183334
633
- track: nukes
634
- extras:
635
- ambiguous_char: N
636
- ambiguous_emission_prob: 0.25
637
- germline: A
638
- name: IGHD3-16_star_02_22
639
- transitions:
640
- IGHD3-16_star_02_23: 0.9736842105263158
641
- end: 0.02631578947368421
642
- - !!python/object:python.hmmwriter.State
643
- emissions:
644
- probs:
645
- A: 0.038028366175183334
646
- C: 0.038028366175183334
647
- G: 0.88591490147445
648
- T: 0.038028366175183334
649
- track: nukes
650
- extras:
651
- ambiguous_char: N
652
- ambiguous_emission_prob: 0.25
653
- germline: G
654
- name: IGHD3-16_star_02_23
655
- transitions:
656
- IGHD3-16_star_02_24: 0.9736842105263158
657
- end: 0.02631578947368421
658
- - !!python/object:python.hmmwriter.State
659
- emissions:
660
- probs:
661
- A: 0.038028366175183334
662
- C: 0.038028366175183334
663
- G: 0.038028366175183334
664
- T: 0.88591490147445
665
- track: nukes
666
- extras:
667
- ambiguous_char: N
668
- ambiguous_emission_prob: 0.25
669
- germline: T
670
- name: IGHD3-16_star_02_24
671
- transitions:
672
- IGHD3-16_star_02_25: 0.9736842105263158
673
- end: 0.02631578947368421
674
- - !!python/object:python.hmmwriter.State
675
- emissions:
676
- probs:
677
- A: 0.038028366175183334
678
- C: 0.038028366175183334
679
- G: 0.038028366175183334
680
- T: 0.88591490147445
681
- track: nukes
682
- extras:
683
- ambiguous_char: N
684
- ambiguous_emission_prob: 0.25
685
- germline: T
686
- name: IGHD3-16_star_02_25
687
- transitions:
688
- IGHD3-16_star_02_26: 0.9736842105263158
689
- end: 0.02631578947368421
690
- - !!python/object:python.hmmwriter.State
691
- emissions:
692
- probs:
693
- A: 0.88591490147445
694
- C: 0.038028366175183334
695
- G: 0.038028366175183334
696
- T: 0.038028366175183334
697
- track: nukes
698
- extras:
699
- ambiguous_char: N
700
- ambiguous_emission_prob: 0.25
701
- germline: A
702
- name: IGHD3-16_star_02_26
703
- transitions:
704
- IGHD3-16_star_02_27: 0.9736842105263158
705
- end: 0.02631578947368421
706
- - !!python/object:python.hmmwriter.State
707
- emissions:
708
- probs:
709
- A: 0.038028366175183334
710
- C: 0.038028366175183334
711
- G: 0.038028366175183334
712
- T: 0.88591490147445
713
- track: nukes
714
- extras:
715
- ambiguous_char: N
716
- ambiguous_emission_prob: 0.25
717
- germline: T
718
- name: IGHD3-16_star_02_27
719
- transitions:
720
- IGHD3-16_star_02_28: 0.9736842105263158
721
- end: 0.02631578947368421
722
- - !!python/object:python.hmmwriter.State
723
- emissions:
724
- probs:
725
- A: 0.037915572593397145
726
- C: 0.8862532822198086
727
- G: 0.037915572593397145
728
- T: 0.037915572593397145
729
- track: nukes
730
- extras:
731
- ambiguous_char: N
732
- ambiguous_emission_prob: 0.25
733
- germline: C
734
- name: IGHD3-16_star_02_28
735
- transitions:
736
- IGHD3-16_star_02_29: 0.9736842105263158
737
- end: 0.02631578947368421
738
- - !!python/object:python.hmmwriter.State
739
- emissions:
740
- probs:
741
- A: 0.03780277901161096
742
- C: 0.03780277901161096
743
- G: 0.8865916629651671
744
- T: 0.03780277901161096
745
- track: nukes
746
- extras:
747
- ambiguous_char: N
748
- ambiguous_emission_prob: 0.25
749
- germline: G
750
- name: IGHD3-16_star_02_29
751
- transitions:
752
- IGHD3-16_star_02_30: 0.9736842105263158
753
- end: 0.02631578947368421
754
- - !!python/object:python.hmmwriter.State
755
- emissions:
756
- probs:
757
- A: 0.037689985429824775
758
- C: 0.037689985429824775
759
- G: 0.037689985429824775
760
- T: 0.8869300437105256
761
- track: nukes
762
- extras:
763
- ambiguous_char: N
764
- ambiguous_emission_prob: 0.25
765
- germline: T
766
- name: IGHD3-16_star_02_30
767
- transitions:
768
- IGHD3-16_star_02_31: 0.9736842105263158
769
- end: 0.02631578947368421
770
- - !!python/object:python.hmmwriter.State
771
- emissions:
772
- probs:
773
- A: 0.03757719184803859
774
- C: 0.03757719184803859
775
- G: 0.03757719184803859
776
- T: 0.8872684244558843
777
- track: nukes
778
- extras:
779
- ambiguous_char: N
780
- ambiguous_emission_prob: 0.25
781
- germline: T
782
- name: IGHD3-16_star_02_31
783
- transitions:
784
- IGHD3-16_star_02_32: 0.9736842105263158
785
- end: 0.02631578947368421
786
- - !!python/object:python.hmmwriter.State
787
- emissions:
788
- probs:
789
- A: 0.8876068052012428
790
- C: 0.037464398266252405
791
- G: 0.037464398266252405
792
- T: 0.037464398266252405
793
- track: nukes
794
- extras:
795
- ambiguous_char: N
796
- ambiguous_emission_prob: 0.25
797
- germline: A
798
- name: IGHD3-16_star_02_32
799
- transitions:
800
- IGHD3-16_star_02_33: 0.9736842105263158
801
- end: 0.02631578947368421
802
- - !!python/object:python.hmmwriter.State
803
- emissions:
804
- probs:
805
- A: 0.037351604684466216
806
- C: 0.037351604684466216
807
- G: 0.037351604684466216
808
- T: 0.8879451859466013
809
- track: nukes
810
- extras:
811
- ambiguous_char: N
812
- ambiguous_emission_prob: 0.25
813
- germline: T
814
- name: IGHD3-16_star_02_33
815
- transitions:
816
- IGHD3-16_star_02_34: 0.9736842105263158
817
- end: 0.02631578947368421
818
- - !!python/object:python.hmmwriter.State
819
- emissions:
820
- probs:
821
- A: 0.88828356669196
822
- C: 0.03723881110268003
823
- G: 0.03723881110268003
824
- T: 0.03723881110268003
825
- track: nukes
826
- extras:
827
- ambiguous_char: N
828
- ambiguous_emission_prob: 0.25
829
- germline: A
830
- name: IGHD3-16_star_02_34
831
- transitions:
832
- IGHD3-16_star_02_35: 0.9736842105263158
833
- end: 0.02631578947368421
834
- - !!python/object:python.hmmwriter.State
835
- emissions:
836
- probs:
837
- A: 0.037126017520893846
838
- C: 0.8886219474373185
839
- G: 0.037126017520893846
840
- T: 0.037126017520893846
841
- track: nukes
842
- extras:
843
- ambiguous_char: N
844
- ambiguous_emission_prob: 0.25
845
- germline: C
846
- name: IGHD3-16_star_02_35
847
- transitions:
848
- IGHD3-16_star_02_36: 0.9736842105263158
849
- end: 0.02631578947368421
850
- - !!python/object:python.hmmwriter.State
851
- emissions:
852
- probs:
853
- A: 0.03701322393910766
854
- C: 0.888960328182677
855
- G: 0.03701322393910766
856
- T: 0.03701322393910766
857
- track: nukes
858
- extras:
859
- ambiguous_char: N
860
- ambiguous_emission_prob: 0.25
861
- germline: C
862
- name: IGHD3-16_star_02_36
863
- transitions:
864
- end: 1.0
865
- tracks:
866
- nukes:
867
- - A
868
- - C
869
- - G
870
- - T