partis-bcr 1.0.11__cp312-cp312-macosx_10_13_universal2.whl → 1.0.11.post1.dev7__cp312-cp312-macosx_10_13_universal2.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- bin/partis +1 -1
- bin/partis-test.py +6 -0
- bin/partis.py +1 -1
- {partis_bcr-1.0.11.data → partis_bcr-1.0.11.post1.dev7.data}/scripts/partis-test.py +6 -0
- {partis_bcr-1.0.11.dist-info → partis_bcr-1.0.11.post1.dev7.dist-info}/METADATA +1 -1
- {partis_bcr-1.0.11.dist-info → partis_bcr-1.0.11.post1.dev7.dist-info}/RECORD +644 -126
- python/recombinator.py +2 -0
- python/treegenerator.py +1 -1
- test/new-results/annotate-new-simu-annotation-performance/hmm/boundaries/d_3p_del.csv +7 -0
- test/new-results/annotate-new-simu-annotation-performance/hmm/boundaries/d_5p_del.csv +8 -0
- test/new-results/annotate-new-simu-annotation-performance/hmm/boundaries/dj_insertion.csv +8 -0
- test/new-results/annotate-new-simu-annotation-performance/hmm/boundaries/fv_insertion.csv +10 -0
- test/new-results/annotate-new-simu-annotation-performance/hmm/boundaries/j_3p_del.csv +4 -0
- test/new-results/annotate-new-simu-annotation-performance/hmm/boundaries/j_5p_del.csv +8 -0
- test/new-results/annotate-new-simu-annotation-performance/hmm/boundaries/jf_insertion.csv +4 -0
- test/new-results/annotate-new-simu-annotation-performance/hmm/boundaries/shm_indel_length.csv +8 -0
- test/new-results/annotate-new-simu-annotation-performance/hmm/boundaries/v_3p_del.csv +4 -0
- test/new-results/annotate-new-simu-annotation-performance/hmm/boundaries/v_5p_del.csv +4 -0
- test/new-results/annotate-new-simu-annotation-performance/hmm/boundaries/vd_insertion.csv +8 -0
- test/new-results/annotate-new-simu-annotation-performance/hmm/gene-call/d_allele_fraction_correct_vs_per_gene_support.csv +28 -0
- test/new-results/annotate-new-simu-annotation-performance/hmm/gene-call/d_fraction_correct_vs_mute_freq.csv +28 -0
- test/new-results/annotate-new-simu-annotation-performance/hmm/gene-call/d_gene.csv +5 -0
- test/new-results/annotate-new-simu-annotation-performance/hmm/gene-call/j_allele_fraction_correct_vs_per_gene_support.csv +28 -0
- test/new-results/annotate-new-simu-annotation-performance/hmm/gene-call/j_fraction_correct_vs_mute_freq.csv +28 -0
- test/new-results/annotate-new-simu-annotation-performance/hmm/gene-call/j_gene.csv +5 -0
- test/new-results/annotate-new-simu-annotation-performance/hmm/gene-call/v_allele_fraction_correct_vs_per_gene_support.csv +28 -0
- test/new-results/annotate-new-simu-annotation-performance/hmm/gene-call/v_fraction_correct_vs_mute_freq.csv +28 -0
- test/new-results/annotate-new-simu-annotation-performance/hmm/gene-call/v_gene.csv +5 -0
- test/new-results/annotate-new-simu-annotation-performance/hmm/mutation/cdr3_hamming_to_true_naive.csv +7 -0
- test/new-results/annotate-new-simu-annotation-performance/hmm/mutation/cdr3_muted_bases.csv +7 -0
- test/new-results/annotate-new-simu-annotation-performance/hmm/mutation/d_hamming_to_true_naive.csv +5 -0
- test/new-results/annotate-new-simu-annotation-performance/hmm/mutation/d_muted_bases.csv +6 -0
- test/new-results/annotate-new-simu-annotation-performance/hmm/mutation/hamming_to_true_naive.csv +7 -0
- test/new-results/annotate-new-simu-annotation-performance/hmm/mutation/j_hamming_to_true_naive.csv +4 -0
- test/new-results/annotate-new-simu-annotation-performance/hmm/mutation/j_muted_bases.csv +5 -0
- test/new-results/annotate-new-simu-annotation-performance/hmm/mutation/mute_freqs.csv +28 -0
- test/new-results/annotate-new-simu-annotation-performance/hmm/mutation/muted_bases.csv +7 -0
- test/new-results/annotate-new-simu-annotation-performance/hmm/mutation/v_hamming_to_true_naive.csv +4 -0
- test/new-results/annotate-new-simu-annotation-performance/hmm/mutation/v_muted_bases.csv +4 -0
- test/new-results/annotate-new-simu-annotation-performance/sw/boundaries/d_3p_del.csv +8 -0
- test/new-results/annotate-new-simu-annotation-performance/sw/boundaries/d_5p_del.csv +6 -0
- test/new-results/annotate-new-simu-annotation-performance/sw/boundaries/dj_insertion.csv +7 -0
- test/new-results/annotate-new-simu-annotation-performance/sw/boundaries/fv_insertion.csv +4 -0
- test/new-results/annotate-new-simu-annotation-performance/sw/boundaries/j_3p_del.csv +4 -0
- test/new-results/annotate-new-simu-annotation-performance/sw/boundaries/j_5p_del.csv +9 -0
- test/new-results/annotate-new-simu-annotation-performance/sw/boundaries/jf_insertion.csv +4 -0
- test/new-results/annotate-new-simu-annotation-performance/sw/boundaries/shm_indel_length.csv +8 -0
- test/new-results/annotate-new-simu-annotation-performance/sw/boundaries/v_3p_del.csv +4 -0
- test/new-results/annotate-new-simu-annotation-performance/sw/boundaries/v_5p_del.csv +4 -0
- test/new-results/annotate-new-simu-annotation-performance/sw/boundaries/vd_insertion.csv +6 -0
- test/new-results/annotate-new-simu-annotation-performance/sw/gene-call/d_fraction_correct_vs_mute_freq.csv +28 -0
- test/new-results/annotate-new-simu-annotation-performance/sw/gene-call/d_gene.csv +5 -0
- test/new-results/annotate-new-simu-annotation-performance/sw/gene-call/j_fraction_correct_vs_mute_freq.csv +28 -0
- test/new-results/annotate-new-simu-annotation-performance/sw/gene-call/j_gene.csv +5 -0
- test/new-results/annotate-new-simu-annotation-performance/sw/gene-call/v_fraction_correct_vs_mute_freq.csv +28 -0
- test/new-results/annotate-new-simu-annotation-performance/sw/gene-call/v_gene.csv +5 -0
- test/new-results/annotate-new-simu-annotation-performance/sw/mutation/cdr3_hamming_to_true_naive.csv +6 -0
- test/new-results/annotate-new-simu-annotation-performance/sw/mutation/cdr3_muted_bases.csv +7 -0
- test/new-results/annotate-new-simu-annotation-performance/sw/mutation/d_hamming_to_true_naive.csv +5 -0
- test/new-results/annotate-new-simu-annotation-performance/sw/mutation/d_muted_bases.csv +5 -0
- test/new-results/annotate-new-simu-annotation-performance/sw/mutation/hamming_to_true_naive.csv +6 -0
- test/new-results/annotate-new-simu-annotation-performance/sw/mutation/j_hamming_to_true_naive.csv +4 -0
- test/new-results/annotate-new-simu-annotation-performance/sw/mutation/j_muted_bases.csv +6 -0
- test/new-results/annotate-new-simu-annotation-performance/sw/mutation/mute_freqs.csv +28 -0
- test/new-results/annotate-new-simu-annotation-performance/sw/mutation/muted_bases.csv +7 -0
- test/new-results/annotate-new-simu-annotation-performance/sw/mutation/v_hamming_to_true_naive.csv +4 -0
- test/new-results/annotate-new-simu-annotation-performance/sw/mutation/v_muted_bases.csv +4 -0
- test/new-results/annotate-new-simu.yaml +1 -0
- test/new-results/cache-new-partition.csv +59 -0
- test/new-results/get-selection-metrics-new-simu.yaml +1 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/hmm/boundaries/d_3p_del.csv +7 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/hmm/boundaries/d_5p_del.csv +6 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/hmm/boundaries/dj_insertion.csv +8 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/hmm/boundaries/fv_insertion.csv +10 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/hmm/boundaries/j_3p_del.csv +4 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/hmm/boundaries/j_5p_del.csv +8 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/hmm/boundaries/jf_insertion.csv +4 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/hmm/boundaries/shm_indel_length.csv +8 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/hmm/boundaries/v_3p_del.csv +4 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/hmm/boundaries/v_5p_del.csv +4 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/hmm/boundaries/vd_insertion.csv +6 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/hmm/gene-call/d_allele_fraction_correct_vs_per_gene_support.csv +28 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/hmm/gene-call/d_fraction_correct_vs_mute_freq.csv +28 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/hmm/gene-call/d_gene.csv +5 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/hmm/gene-call/j_allele_fraction_correct_vs_per_gene_support.csv +28 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/hmm/gene-call/j_fraction_correct_vs_mute_freq.csv +28 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/hmm/gene-call/j_gene.csv +5 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/hmm/gene-call/v_allele_fraction_correct_vs_per_gene_support.csv +28 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/hmm/gene-call/v_fraction_correct_vs_mute_freq.csv +28 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/hmm/gene-call/v_gene.csv +5 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/hmm/mutation/cdr3_hamming_to_true_naive.csv +5 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/hmm/mutation/cdr3_muted_bases.csv +5 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/hmm/mutation/d_hamming_to_true_naive.csv +4 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/hmm/mutation/d_muted_bases.csv +4 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/hmm/mutation/hamming_to_true_naive.csv +5 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/hmm/mutation/j_hamming_to_true_naive.csv +4 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/hmm/mutation/j_muted_bases.csv +5 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/hmm/mutation/mute_freqs.csv +28 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/hmm/mutation/muted_bases.csv +5 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/hmm/mutation/v_hamming_to_true_naive.csv +4 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/hmm/mutation/v_muted_bases.csv +4 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/sw/boundaries/d_3p_del.csv +8 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/sw/boundaries/d_5p_del.csv +6 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/sw/boundaries/dj_insertion.csv +7 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/sw/boundaries/fv_insertion.csv +4 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/sw/boundaries/j_3p_del.csv +4 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/sw/boundaries/j_5p_del.csv +9 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/sw/boundaries/jf_insertion.csv +4 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/sw/boundaries/shm_indel_length.csv +8 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/sw/boundaries/v_3p_del.csv +4 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/sw/boundaries/v_5p_del.csv +4 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/sw/boundaries/vd_insertion.csv +6 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/sw/gene-call/d_fraction_correct_vs_mute_freq.csv +28 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/sw/gene-call/d_gene.csv +5 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/sw/gene-call/j_fraction_correct_vs_mute_freq.csv +28 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/sw/gene-call/j_gene.csv +5 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/sw/gene-call/v_fraction_correct_vs_mute_freq.csv +28 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/sw/gene-call/v_gene.csv +5 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/sw/mutation/cdr3_hamming_to_true_naive.csv +6 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/sw/mutation/cdr3_muted_bases.csv +7 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/sw/mutation/d_hamming_to_true_naive.csv +5 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/sw/mutation/d_muted_bases.csv +5 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/sw/mutation/hamming_to_true_naive.csv +6 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/sw/mutation/j_hamming_to_true_naive.csv +4 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/sw/mutation/j_muted_bases.csv +6 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/sw/mutation/mute_freqs.csv +28 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/sw/mutation/muted_bases.csv +7 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/sw/mutation/v_hamming_to_true_naive.csv +4 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/sw/mutation/v_muted_bases.csv +4 -0
- test/new-results/multi-annotate-new-simu.yaml +1 -0
- test/new-results/partition-new-simu/fasttree/iclust-0/fasttree.out +1 -0
- test/new-results/partition-new-simu/fasttree/iclust-0/input-seqs.fa +24 -0
- test/new-results/partition-new-simu/fasttree/iclust-0/log +23 -0
- test/new-results/partition-new-simu/fasttree/iclust-1/fasttree.out +1 -0
- test/new-results/partition-new-simu/fasttree/iclust-1/input-seqs.fa +16 -0
- test/new-results/partition-new-simu/fasttree/iclust-1/log +23 -0
- test/new-results/partition-new-simu/fasttree/iclust-2/fasttree.out +1 -0
- test/new-results/partition-new-simu/fasttree/iclust-2/input-seqs.fa +16 -0
- test/new-results/partition-new-simu/fasttree/iclust-2/log +22 -0
- test/new-results/partition-new-simu-annotation-performance/hmm/boundaries/d_3p_del.csv +7 -0
- test/new-results/partition-new-simu-annotation-performance/hmm/boundaries/d_5p_del.csv +6 -0
- test/new-results/partition-new-simu-annotation-performance/hmm/boundaries/dj_insertion.csv +8 -0
- test/new-results/partition-new-simu-annotation-performance/hmm/boundaries/fv_insertion.csv +10 -0
- test/new-results/partition-new-simu-annotation-performance/hmm/boundaries/j_3p_del.csv +4 -0
- test/new-results/partition-new-simu-annotation-performance/hmm/boundaries/j_5p_del.csv +8 -0
- test/new-results/partition-new-simu-annotation-performance/hmm/boundaries/jf_insertion.csv +4 -0
- test/new-results/partition-new-simu-annotation-performance/hmm/boundaries/shm_indel_length.csv +8 -0
- test/new-results/partition-new-simu-annotation-performance/hmm/boundaries/v_3p_del.csv +4 -0
- test/new-results/partition-new-simu-annotation-performance/hmm/boundaries/v_5p_del.csv +4 -0
- test/new-results/partition-new-simu-annotation-performance/hmm/boundaries/vd_insertion.csv +6 -0
- test/new-results/partition-new-simu-annotation-performance/hmm/gene-call/d_allele_fraction_correct_vs_per_gene_support.csv +28 -0
- test/new-results/partition-new-simu-annotation-performance/hmm/gene-call/d_fraction_correct_vs_mute_freq.csv +28 -0
- test/new-results/partition-new-simu-annotation-performance/hmm/gene-call/d_gene.csv +5 -0
- test/new-results/partition-new-simu-annotation-performance/hmm/gene-call/j_allele_fraction_correct_vs_per_gene_support.csv +28 -0
- test/new-results/partition-new-simu-annotation-performance/hmm/gene-call/j_fraction_correct_vs_mute_freq.csv +28 -0
- test/new-results/partition-new-simu-annotation-performance/hmm/gene-call/j_gene.csv +5 -0
- test/new-results/partition-new-simu-annotation-performance/hmm/gene-call/v_allele_fraction_correct_vs_per_gene_support.csv +28 -0
- test/new-results/partition-new-simu-annotation-performance/hmm/gene-call/v_fraction_correct_vs_mute_freq.csv +28 -0
- test/new-results/partition-new-simu-annotation-performance/hmm/gene-call/v_gene.csv +5 -0
- test/new-results/partition-new-simu-annotation-performance/hmm/mutation/cdr3_hamming_to_true_naive.csv +5 -0
- test/new-results/partition-new-simu-annotation-performance/hmm/mutation/cdr3_muted_bases.csv +5 -0
- test/new-results/partition-new-simu-annotation-performance/hmm/mutation/d_hamming_to_true_naive.csv +4 -0
- test/new-results/partition-new-simu-annotation-performance/hmm/mutation/d_muted_bases.csv +4 -0
- test/new-results/partition-new-simu-annotation-performance/hmm/mutation/hamming_to_true_naive.csv +5 -0
- test/new-results/partition-new-simu-annotation-performance/hmm/mutation/j_hamming_to_true_naive.csv +4 -0
- test/new-results/partition-new-simu-annotation-performance/hmm/mutation/j_muted_bases.csv +5 -0
- test/new-results/partition-new-simu-annotation-performance/hmm/mutation/mute_freqs.csv +28 -0
- test/new-results/partition-new-simu-annotation-performance/hmm/mutation/muted_bases.csv +5 -0
- test/new-results/partition-new-simu-annotation-performance/hmm/mutation/v_hamming_to_true_naive.csv +4 -0
- test/new-results/partition-new-simu-annotation-performance/hmm/mutation/v_muted_bases.csv +4 -0
- test/new-results/partition-new-simu-annotation-performance/sw/boundaries/d_3p_del.csv +8 -0
- test/new-results/partition-new-simu-annotation-performance/sw/boundaries/d_5p_del.csv +6 -0
- test/new-results/partition-new-simu-annotation-performance/sw/boundaries/dj_insertion.csv +7 -0
- test/new-results/partition-new-simu-annotation-performance/sw/boundaries/fv_insertion.csv +4 -0
- test/new-results/partition-new-simu-annotation-performance/sw/boundaries/j_3p_del.csv +4 -0
- test/new-results/partition-new-simu-annotation-performance/sw/boundaries/j_5p_del.csv +9 -0
- test/new-results/partition-new-simu-annotation-performance/sw/boundaries/jf_insertion.csv +4 -0
- test/new-results/partition-new-simu-annotation-performance/sw/boundaries/shm_indel_length.csv +8 -0
- test/new-results/partition-new-simu-annotation-performance/sw/boundaries/v_3p_del.csv +4 -0
- test/new-results/partition-new-simu-annotation-performance/sw/boundaries/v_5p_del.csv +4 -0
- test/new-results/partition-new-simu-annotation-performance/sw/boundaries/vd_insertion.csv +6 -0
- test/new-results/partition-new-simu-annotation-performance/sw/gene-call/d_fraction_correct_vs_mute_freq.csv +28 -0
- test/new-results/partition-new-simu-annotation-performance/sw/gene-call/d_gene.csv +5 -0
- test/new-results/partition-new-simu-annotation-performance/sw/gene-call/j_fraction_correct_vs_mute_freq.csv +28 -0
- test/new-results/partition-new-simu-annotation-performance/sw/gene-call/j_gene.csv +5 -0
- test/new-results/partition-new-simu-annotation-performance/sw/gene-call/v_fraction_correct_vs_mute_freq.csv +28 -0
- test/new-results/partition-new-simu-annotation-performance/sw/gene-call/v_gene.csv +5 -0
- test/new-results/partition-new-simu-annotation-performance/sw/mutation/cdr3_hamming_to_true_naive.csv +6 -0
- test/new-results/partition-new-simu-annotation-performance/sw/mutation/cdr3_muted_bases.csv +7 -0
- test/new-results/partition-new-simu-annotation-performance/sw/mutation/d_hamming_to_true_naive.csv +5 -0
- test/new-results/partition-new-simu-annotation-performance/sw/mutation/d_muted_bases.csv +5 -0
- test/new-results/partition-new-simu-annotation-performance/sw/mutation/hamming_to_true_naive.csv +6 -0
- test/new-results/partition-new-simu-annotation-performance/sw/mutation/j_hamming_to_true_naive.csv +4 -0
- test/new-results/partition-new-simu-annotation-performance/sw/mutation/j_muted_bases.csv +6 -0
- test/new-results/partition-new-simu-annotation-performance/sw/mutation/mute_freqs.csv +28 -0
- test/new-results/partition-new-simu-annotation-performance/sw/mutation/muted_bases.csv +7 -0
- test/new-results/partition-new-simu-annotation-performance/sw/mutation/v_hamming_to_true_naive.csv +4 -0
- test/new-results/partition-new-simu-annotation-performance/sw/mutation/v_muted_bases.csv +4 -0
- test/new-results/partition-new-simu.yaml +1 -0
- test/new-results/run-times.csv +9 -0
- test/new-results/seed-partition-new-simu.yaml +1 -0
- test/new-results/test/parameters/data/hmm/all-mean-mute-freqs.csv +43 -0
- test/new-results/test/parameters/data/hmm/all-mean-n-muted.csv +155 -0
- test/new-results/test/parameters/data/hmm/all-probs.csv +44 -0
- test/new-results/test/parameters/data/hmm/cluster_size.csv +2 -0
- test/new-results/test/parameters/data/hmm/d-mean-mute-freqs.csv +43 -0
- test/new-results/test/parameters/data/hmm/d-mean-n-muted.csv +14 -0
- test/new-results/test/parameters/data/hmm/d_gene-d_3p_del-probs.csv +34 -0
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+
27.5,0.0,,0.0
|
32
|
+
28.5,0.0,,0.0
|
33
|
+
29.5,0.0,,0.0
|
34
|
+
30.5,0.0,,0.0
|
35
|
+
31.5,1.0,,1.0
|
36
|
+
32.5,0.0,,0.0
|
37
|
+
33.5,1.0,,1.0
|
38
|
+
34.5,1.0,,1.0
|
39
|
+
35.5,1.0,,1.0
|
40
|
+
36.5,0.0,,0.0
|
41
|
+
37.5,0.0,,0.0
|
42
|
+
38.5,0.0,,0.0
|
43
|
+
39.5,0.0,,0.0
|
44
|
+
40.5,0.0,,0.0
|
45
|
+
41.5,0.0,,0.0
|
46
|
+
42.5,0.0,,0.0
|
47
|
+
43.5,0.0,,0.0
|
48
|
+
44.5,0.0,,0.0
|
49
|
+
45.5,0.0,,0.0
|
50
|
+
46.5,0.0,,0.0
|
51
|
+
47.5,0.0,,0.0
|
52
|
+
48.5,0.0,,0.0
|
53
|
+
49.5,1.0,,1.0
|
54
|
+
50.5,0.0,,0.0
|
55
|
+
51.5,1.0,,1.0
|
56
|
+
52.5,0.0,,0.0
|
57
|
+
53.5,0.0,,0.0
|
58
|
+
54.5,0.0,,0.0
|
59
|
+
55.5,0.0,,0.0
|
60
|
+
56.5,0.0,,0.0
|
61
|
+
57.5,0.0,,0.0
|
62
|
+
58.5,1.0,,1.0
|
63
|
+
59.5,0.0,,0.0
|
64
|
+
60.5,0.0,,0.0
|
65
|
+
61.5,0.0,,0.0
|
66
|
+
62.5,0.0,,0.0
|
67
|
+
63.5,0.0,,0.0
|
68
|
+
64.5,0.0,,0.0
|
69
|
+
65.5,0.0,,0.0
|
70
|
+
66.5,0.0,,0.0
|
71
|
+
67.5,0.0,,0.0
|
72
|
+
68.5,0.0,,0.0
|
73
|
+
69.5,0.0,,0.0
|
74
|
+
70.5,0.0,,0.0
|
75
|
+
71.5,0.0,,0.0
|
76
|
+
72.5,0.0,,0.0
|
77
|
+
73.5,0.0,,0.0
|
78
|
+
74.5,0.0,,0.0
|
79
|
+
75.5,0.0,,0.0
|
80
|
+
76.5,0.0,,0.0
|
81
|
+
77.5,0.0,,0.0
|
82
|
+
78.5,0.0,,0.0
|
83
|
+
79.5,0.0,,0.0
|
84
|
+
80.5,0.0,,0.0
|
85
|
+
81.5,0.0,,0.0
|
86
|
+
82.5,1.0,,1.0
|
87
|
+
83.5,0.0,,0.0
|
88
|
+
84.5,0.0,,0.0
|
89
|
+
85.5,0.0,,0.0
|
90
|
+
86.5,0.0,,0.0
|
91
|
+
87.5,0.0,,0.0
|
92
|
+
88.5,0.0,,0.0
|
93
|
+
89.5,0.0,,0.0
|
94
|
+
90.5,1.0,,1.0
|
95
|
+
91.5,0.0,,0.0
|
96
|
+
92.5,0.0,,0.0
|
97
|
+
93.5,0.0,,0.0
|
98
|
+
94.5,0.0,,0.0
|
99
|
+
95.5,0.0,,0.0
|
100
|
+
96.5,0.0,,0.0
|
101
|
+
97.5,0.0,,0.0
|
102
|
+
98.5,0.0,,0.0
|
103
|
+
99.5,0.0,,0.0
|
104
|
+
100.5,0.0,,0.0
|
105
|
+
101.5,0.0,,0.0
|
106
|
+
102.5,0.0,,0.0
|
107
|
+
103.5,0.0,,0.0
|
108
|
+
104.5,0.0,,0.0
|
109
|
+
105.5,0.0,,0.0
|
110
|
+
106.5,0.0,,0.0
|
111
|
+
107.5,1.0,,1.0
|
112
|
+
108.5,2.0,,1.4142135623730951
|
113
|
+
109.5,0.0,,0.0
|
114
|
+
110.5,0.0,,0.0
|
115
|
+
111.5,0.0,,0.0
|
116
|
+
112.5,0.0,,0.0
|
117
|
+
113.5,0.0,,0.0
|
118
|
+
114.5,0.0,,0.0
|
119
|
+
115.5,0.0,,0.0
|
120
|
+
116.5,0.0,,0.0
|
121
|
+
117.5,0.0,,0.0
|
122
|
+
118.5,0.0,,0.0
|
123
|
+
119.5,0.0,,0.0
|
124
|
+
120.5,0.0,,0.0
|
125
|
+
121.5,0.0,,0.0
|
126
|
+
122.5,0.0,,0.0
|
127
|
+
123.5,0.0,,0.0
|
128
|
+
124.5,0.0,,0.0
|
129
|
+
125.5,0.0,,0.0
|
130
|
+
126.5,0.0,,0.0
|
131
|
+
127.5,0.0,,0.0
|
132
|
+
128.5,0.0,,0.0
|
133
|
+
129.5,0.0,,0.0
|
134
|
+
130.5,0.0,,0.0
|
135
|
+
131.5,0.0,,0.0
|
136
|
+
132.5,0.0,,0.0
|
137
|
+
133.5,0.0,,0.0
|
138
|
+
134.5,0.0,,0.0
|
139
|
+
135.5,0.0,,0.0
|
140
|
+
136.5,0.0,,0.0
|
141
|
+
137.5,0.0,,0.0
|
142
|
+
138.5,0.0,,0.0
|
143
|
+
139.5,0.0,,0.0
|
144
|
+
140.5,0.0,,0.0
|
145
|
+
141.5,0.0,,0.0
|
146
|
+
142.5,0.0,,0.0
|
147
|
+
143.5,0.0,,0.0
|
148
|
+
144.5,0.0,,0.0
|
149
|
+
145.5,0.0,,0.0
|
150
|
+
146.5,0.0,,0.0
|
151
|
+
147.5,0.0,,0.0
|
152
|
+
148.5,0.0,,0.0
|
153
|
+
149.5,0.0,,0.0
|
154
|
+
150.5,0.0,,0.0
|
155
|
+
151.5,1.0,,1.0
|
@@ -0,0 +1,44 @@
|
|
1
|
+
v_gene,d_gene,j_gene,v_5p_del,v_3p_del,d_5p_del,d_3p_del,j_5p_del,j_3p_del,fv_insertion,vd_insertion,dj_insertion,jf_insertion,cdr3_length,count
|
2
|
+
IGHV3-66*02,IGHD6-13*01,IGHJ4*02,0,2,5,2,11,0,0,4,0,0,33,1
|
3
|
+
IGHV3-66*02,IGHD6-13*01,IGHJ4*02,0,2,3,6,8,0,0,2,1,0,33,2
|
4
|
+
IGHV3-66*02,IGHD6-25*01,IGHJ5*02,0,2,4,3,11,0,0,3,1,0,33,1
|
5
|
+
IGHV3-66*02,IGHD6-13*01,IGHJ4*02,0,2,4,6,8,0,0,3,1,0,33,1
|
6
|
+
IGHV1-18*01,IGHD3-16*03,IGHJ2*01,0,0,22,7,4,0,3,1,7,0,45,1
|
7
|
+
IGHV1-2*02,IGHD3-16*02,IGHJ2*01,0,1,4,0,0,0,0,7,9,0,81,1
|
8
|
+
IGHV4-34*01,IGHD3-10*01,IGHJ4*02,253,1,2,9,6,0,0,10,6,0,57,1
|
9
|
+
IGHV3-48*03,IGHD6-6*01,IGHJ3*02,259,0,7,0,0,0,0,13,6,0,60,1
|
10
|
+
IGHV3-23*01,IGHD2-21*01,IGHJ5*02,237,0,1,11,2,22,0,19,9,0,73,1
|
11
|
+
IGHV3-23*01,IGHD6-13*01,IGHJ4*02,259,0,8,3,4,0,0,9,2,0,45,1
|
12
|
+
IGHV4-39*09,IGHD3-10*01,IGHJ4*02,259,1,0,10,4,0,0,0,10,0,54,1
|
13
|
+
IGHV2-70D*04,IGHD4-4*01,IGHJ6*02,209,4,3,5,19,22,0,4,8,0,42,1
|
14
|
+
IGHV1-18*01,IGHD6-13*01,IGHJ4*02,215,0,4,4,2,22,0,3,9,0,51,1
|
15
|
+
IGHV5-51*01,IGHD2-15*01,IGHJ2*01,0,1,13,0,3,0,0,1,9,0,57,1
|
16
|
+
IGHV5-51*01,IGHD6-19*01,IGHJ5*02,212,1,0,2,3,22,0,2,0,0,48,1
|
17
|
+
IGHV3-69-1*02,IGHD1-26*01,IGHJ4*02,256,0,10,3,4,0,0,14,3,0,48,1
|
18
|
+
IGHV3-69-1*02,IGHD2-8*02,IGHJ4*02,256,2,10,10,4,0,0,11,1,0,45,1
|
19
|
+
IGHV3-11*04,IGHD6-6*01,IGHJ3*02,259,0,2,0,0,0,0,6,2,0,54,1
|
20
|
+
IGHV3-66*02,IGHD1-20*01,IGHJ4*02,0,2,3,7,8,0,0,6,8,0,39,2
|
21
|
+
IGHV1-2*02,IGHD2-8*01,IGHJ1*01,0,3,0,0,11,0,0,3,2,0,54,2
|
22
|
+
IGHV5-51*01,IGHD3-16*03,IGHJ3*02,224,1,17,1,3,22,0,4,11,0,60,1
|
23
|
+
IGHV3-11*04,IGHD5-5*01,IGHJ3*02,230,5,0,12,4,0,0,2,1,114,32,1
|
24
|
+
IGHV1-2*02,IGHD4-17*01,IGHJ4*02,0,5,4,2,1,0,0,0,10,0,42,1
|
25
|
+
IGHV4-4*09,IGHD2-15*01,IGHJ6*03,232,3,4,3,2,22,0,7,2,0,71,1
|
26
|
+
IGHV3-23*03,IGHD3-22*01,IGHJ5*02,259,6,10,10,9,0,0,13,2,0,42,1
|
27
|
+
IGHV1-18*01,IGHD6-13*01,IGHJ4*02,215,0,2,7,6,22,0,9,8,0,51,1
|
28
|
+
IGHV3-23*01,IGHD2-2*01,IGHJ5*02,206,0,17,5,6,22,0,6,2,0,42,1
|
29
|
+
IGHV3-23*01,IGHD4-17*01,IGHJ3*02,259,0,5,1,3,0,0,5,6,0,48,1
|
30
|
+
IGHV1-18*01,IGHD1-1*01,IGHJ6*02,203,0,10,4,9,22,0,2,0,0,39,1
|
31
|
+
IGHV3-9*02,IGHD3-10*03,IGHJ5*02,259,0,9,9,9,0,0,15,5,0,57,1
|
32
|
+
IGHV2-5*02,IGHD3-10*01,IGHJ4*02,233,3,12,3,7,22,0,21,9,0,66,1
|
33
|
+
IGHV1-2*02,IGHD2-21*01,IGHJ4*02,0,1,4,0,0,0,0,8,22,0,81,1
|
34
|
+
IGHV1-2*02,IGHD2-21*02,IGHJ1*01,0,1,0,2,1,0,0,1,3,0,60,1
|
35
|
+
IGHV1-2*02,IGHD2-15*01,IGHJ2*01,0,1,0,3,2,0,0,1,1,0,60,1
|
36
|
+
IGHV3-7*05,IGHD6-19*01,IGHJ6*02,227,0,9,1,17,22,0,6,20,0,63,1
|
37
|
+
IGHV3-69-1*02,IGHD2-2*01,IGHJ4*02,256,2,3,2,12,0,0,5,0,0,45,1
|
38
|
+
IGHV4-61*01,IGHD3-22*01,IGHJ1*01,0,0,0,2,1,0,0,0,0,0,60,1
|
39
|
+
IGHV3-11*04,IGHD3-3*01,IGHJ6*02,224,0,3,8,15,22,0,6,6,0,60,1
|
40
|
+
IGHV4-4*09,IGHD6-19*01,IGHJ5*02,253,3,0,10,1,0,0,10,0,0,48,1
|
41
|
+
IGHV1-2*02,IGHD2-15*01,IGHJ5*02,0,2,2,3,16,0,0,1,41,0,81,1
|
42
|
+
IGHV3-30*04,IGHD6-6*01,IGHJ4*02,259,0,0,6,4,0,0,15,6,0,57,1
|
43
|
+
IGHV3-23*01,IGHD3-16*02,IGHJ4*02,0,0,8,3,0,0,0,0,0,0,54,1
|
44
|
+
IGHV3-11*04,IGHD6-13*01,IGHJ4*02,259,4,1,1,7,0,0,5,16,0,57,1
|
@@ -0,0 +1,43 @@
|
|
1
|
+
bin_low_edge,contents,binlabel,error
|
2
|
+
-0.01,0.0,,0.0
|
3
|
+
0.0,0.34782608695652173,,0.08695652173913043
|
4
|
+
0.01,0.0,,0.0
|
5
|
+
0.02,0.0,,0.0
|
6
|
+
0.03,0.021739130434782608,,0.021739130434782608
|
7
|
+
0.04,0.0,,0.0
|
8
|
+
0.05,0.0,,0.0
|
9
|
+
0.06,0.043478260869565216,,0.030743773095067286
|
10
|
+
0.07,0.021739130434782608,,0.021739130434782608
|
11
|
+
0.08,0.043478260869565216,,0.030743773095067286
|
12
|
+
0.09,0.06521739130434782,,0.03765327842541037
|
13
|
+
0.1,0.06521739130434782,,0.03765327842541037
|
14
|
+
0.11,0.021739130434782608,,0.021739130434782608
|
15
|
+
0.12,0.021739130434782608,,0.021739130434782608
|
16
|
+
0.13,0.0,,0.0
|
17
|
+
0.14,0.0,,0.0
|
18
|
+
0.15,0.021739130434782608,,0.021739130434782608
|
19
|
+
0.16,0.021739130434782608,,0.021739130434782608
|
20
|
+
0.17,0.0,,0.0
|
21
|
+
0.18,0.06521739130434782,,0.03765327842541037
|
22
|
+
0.19,0.0,,0.0
|
23
|
+
0.2,0.021739130434782608,,0.021739130434782608
|
24
|
+
0.21,0.0,,0.0
|
25
|
+
0.22,0.0,,0.0
|
26
|
+
0.23,0.06521739130434782,,0.03765327842541037
|
27
|
+
0.24,0.0,,0.0
|
28
|
+
0.25,0.021739130434782608,,0.021739130434782608
|
29
|
+
0.26,0.021739130434782608,,0.021739130434782608
|
30
|
+
0.27,0.0,,0.0
|
31
|
+
0.28,0.021739130434782608,,0.021739130434782608
|
32
|
+
0.29,0.0,,0.0
|
33
|
+
0.3,0.0,,0.0
|
34
|
+
0.31,0.0,,0.0
|
35
|
+
0.32,0.043478260869565216,,0.030743773095067286
|
36
|
+
0.33,0.0,,0.0
|
37
|
+
0.34,0.0,,0.0
|
38
|
+
0.35000000000000003,0.0,,0.0
|
39
|
+
0.36,0.0,,0.0
|
40
|
+
0.37,0.021739130434782608,,0.021739130434782608
|
41
|
+
0.38,0.0,,0.0
|
42
|
+
0.39,0.021739130434782608,,0.021739130434782608
|
43
|
+
0.4,0.0,,0.0
|
@@ -0,0 +1,14 @@
|
|
1
|
+
bin_low_edge,contents,binlabel,error
|
2
|
+
-1.5,0.0,,0.0
|
3
|
+
-0.5,16.0,,4.0
|
4
|
+
0.5,10.0,,3.1622776601683795
|
5
|
+
1.5,8.0,,2.8284271247461903
|
6
|
+
2.5,3.0,,1.7320508075688772
|
7
|
+
3.5,1.0,,1.0
|
8
|
+
4.5,2.0,,1.4142135623730951
|
9
|
+
5.5,2.0,,1.4142135623730951
|
10
|
+
6.5,0.0,,0.0
|
11
|
+
7.5,0.0,,0.0
|
12
|
+
8.5,0.0,,0.0
|
13
|
+
9.5,2.0,,1.4142135623730951
|
14
|
+
10.5,2.0,,1.4142135623730951
|
@@ -0,0 +1,40 @@
|
|
1
|
+
d_3p_del,d_gene,count
|
2
|
+
2,IGHD6-13*01,1
|
3
|
+
6,IGHD6-13*01,3
|
4
|
+
3,IGHD6-25*01,1
|
5
|
+
7,IGHD3-16*03,1
|
6
|
+
0,IGHD3-16*02,1
|
7
|
+
9,IGHD3-10*01,1
|
8
|
+
0,IGHD6-6*01,2
|
9
|
+
11,IGHD2-21*01,1
|
10
|
+
3,IGHD6-13*01,1
|
11
|
+
10,IGHD3-10*01,1
|
12
|
+
5,IGHD4-4*01,1
|
13
|
+
4,IGHD6-13*01,1
|
14
|
+
0,IGHD2-15*01,1
|
15
|
+
2,IGHD6-19*01,1
|
16
|
+
3,IGHD1-26*01,1
|
17
|
+
10,IGHD2-8*02,1
|
18
|
+
7,IGHD1-20*01,2
|
19
|
+
0,IGHD2-8*01,2
|
20
|
+
1,IGHD3-16*03,1
|
21
|
+
12,IGHD5-5*01,1
|
22
|
+
2,IGHD4-17*01,1
|
23
|
+
3,IGHD2-15*01,3
|
24
|
+
10,IGHD3-22*01,1
|
25
|
+
7,IGHD6-13*01,1
|
26
|
+
5,IGHD2-2*01,1
|
27
|
+
1,IGHD4-17*01,1
|
28
|
+
4,IGHD1-1*01,1
|
29
|
+
9,IGHD3-10*03,1
|
30
|
+
3,IGHD3-10*01,1
|
31
|
+
0,IGHD2-21*01,1
|
32
|
+
2,IGHD2-21*02,1
|
33
|
+
1,IGHD6-19*01,1
|
34
|
+
2,IGHD2-2*01,1
|
35
|
+
2,IGHD3-22*01,1
|
36
|
+
8,IGHD3-3*01,1
|
37
|
+
10,IGHD6-19*01,1
|
38
|
+
6,IGHD6-6*01,1
|
39
|
+
3,IGHD3-16*02,1
|
40
|
+
1,IGHD6-13*01,1
|
@@ -0,0 +1,42 @@
|
|
1
|
+
d_5p_del,d_gene,count
|
2
|
+
5,IGHD6-13*01,1
|
3
|
+
3,IGHD6-13*01,2
|
4
|
+
4,IGHD6-25*01,1
|
5
|
+
4,IGHD6-13*01,2
|
6
|
+
22,IGHD3-16*03,1
|
7
|
+
4,IGHD3-16*02,1
|
8
|
+
2,IGHD3-10*01,1
|
9
|
+
7,IGHD6-6*01,1
|
10
|
+
1,IGHD2-21*01,1
|
11
|
+
8,IGHD6-13*01,1
|
12
|
+
0,IGHD3-10*01,1
|
13
|
+
3,IGHD4-4*01,1
|
14
|
+
13,IGHD2-15*01,1
|
15
|
+
0,IGHD6-19*01,2
|
16
|
+
10,IGHD1-26*01,1
|
17
|
+
10,IGHD2-8*02,1
|
18
|
+
2,IGHD6-6*01,1
|
19
|
+
3,IGHD1-20*01,2
|
20
|
+
0,IGHD2-8*01,2
|
21
|
+
17,IGHD3-16*03,1
|
22
|
+
0,IGHD5-5*01,1
|
23
|
+
4,IGHD4-17*01,1
|
24
|
+
4,IGHD2-15*01,1
|
25
|
+
10,IGHD3-22*01,1
|
26
|
+
2,IGHD6-13*01,1
|
27
|
+
17,IGHD2-2*01,1
|
28
|
+
5,IGHD4-17*01,1
|
29
|
+
10,IGHD1-1*01,1
|
30
|
+
9,IGHD3-10*03,1
|
31
|
+
12,IGHD3-10*01,1
|
32
|
+
4,IGHD2-21*01,1
|
33
|
+
0,IGHD2-21*02,1
|
34
|
+
0,IGHD2-15*01,1
|
35
|
+
9,IGHD6-19*01,1
|
36
|
+
3,IGHD2-2*01,1
|
37
|
+
0,IGHD3-22*01,1
|
38
|
+
3,IGHD3-3*01,1
|
39
|
+
2,IGHD2-15*01,1
|
40
|
+
0,IGHD6-6*01,1
|
41
|
+
8,IGHD3-16*02,1
|
42
|
+
1,IGHD6-13*01,1
|
@@ -0,0 +1,23 @@
|
|
1
|
+
d_gene,count
|
2
|
+
IGHD6-13*01,8
|
3
|
+
IGHD6-25*01,1
|
4
|
+
IGHD3-16*03,2
|
5
|
+
IGHD3-16*02,2
|
6
|
+
IGHD3-10*01,3
|
7
|
+
IGHD6-6*01,3
|
8
|
+
IGHD2-21*01,2
|
9
|
+
IGHD4-4*01,1
|
10
|
+
IGHD2-15*01,4
|
11
|
+
IGHD6-19*01,3
|
12
|
+
IGHD1-26*01,1
|
13
|
+
IGHD2-8*02,1
|
14
|
+
IGHD1-20*01,2
|
15
|
+
IGHD2-8*01,2
|
16
|
+
IGHD5-5*01,1
|
17
|
+
IGHD4-17*01,2
|
18
|
+
IGHD3-22*01,2
|
19
|
+
IGHD2-2*01,2
|
20
|
+
IGHD1-1*01,1
|
21
|
+
IGHD3-10*03,1
|
22
|
+
IGHD2-21*02,1
|
23
|
+
IGHD3-3*01,1
|
@@ -0,0 +1,40 @@
|
|
1
|
+
vd_insertion,d_gene,count
|
2
|
+
4,IGHD6-13*01,1
|
3
|
+
2,IGHD6-13*01,2
|
4
|
+
3,IGHD6-25*01,1
|
5
|
+
3,IGHD6-13*01,2
|
6
|
+
1,IGHD3-16*03,1
|
7
|
+
7,IGHD3-16*02,1
|
8
|
+
10,IGHD3-10*01,1
|
9
|
+
13,IGHD6-6*01,1
|
10
|
+
19,IGHD2-21*01,1
|
11
|
+
9,IGHD6-13*01,2
|
12
|
+
0,IGHD3-10*01,1
|
13
|
+
4,IGHD4-4*01,1
|
14
|
+
1,IGHD2-15*01,3
|
15
|
+
2,IGHD6-19*01,1
|
16
|
+
14,IGHD1-26*01,1
|
17
|
+
11,IGHD2-8*02,1
|
18
|
+
6,IGHD6-6*01,1
|
19
|
+
6,IGHD1-20*01,2
|
20
|
+
3,IGHD2-8*01,2
|
21
|
+
4,IGHD3-16*03,1
|
22
|
+
2,IGHD5-5*01,1
|
23
|
+
0,IGHD4-17*01,1
|
24
|
+
7,IGHD2-15*01,1
|
25
|
+
13,IGHD3-22*01,1
|
26
|
+
6,IGHD2-2*01,1
|
27
|
+
5,IGHD4-17*01,1
|
28
|
+
2,IGHD1-1*01,1
|
29
|
+
15,IGHD3-10*03,1
|
30
|
+
21,IGHD3-10*01,1
|
31
|
+
8,IGHD2-21*01,1
|
32
|
+
1,IGHD2-21*02,1
|
33
|
+
6,IGHD6-19*01,1
|
34
|
+
5,IGHD2-2*01,1
|
35
|
+
0,IGHD3-22*01,1
|
36
|
+
6,IGHD3-3*01,1
|
37
|
+
10,IGHD6-19*01,1
|
38
|
+
15,IGHD6-6*01,1
|
39
|
+
0,IGHD3-16*02,1
|
40
|
+
5,IGHD6-13*01,1
|
@@ -0,0 +1,26 @@
|
|
1
|
+
gene,cyst_position,tryp_position,phen_position,aligned_seq
|
2
|
+
IGHV2-5*02,288,,,
|
3
|
+
IGHV4-34*01,282,,,
|
4
|
+
IGHV1-2*02,285,,,
|
5
|
+
IGHV3-23*03,285,,,
|
6
|
+
IGHV1-18*01,285,,,
|
7
|
+
IGHV3-7*05,285,,,
|
8
|
+
IGHV3-69-1*02,282,,,
|
9
|
+
IGHV3-11*04,285,,,
|
10
|
+
IGHV3-30*04,285,,,
|
11
|
+
IGHV2-70D*04,288,,,
|
12
|
+
IGHV5-51*01,285,,,
|
13
|
+
IGHV3-66*02,282,,,
|
14
|
+
IGHV4-39*09,288,,,
|
15
|
+
IGHV3-9*02,285,,,
|
16
|
+
IGHV3-23*01,285,,,
|
17
|
+
IGHV3-48*03,285,,,
|
18
|
+
IGHV4-61*01,288,,,
|
19
|
+
IGHV4-4*09,282,,,
|
20
|
+
IGHJ4*02,,14,,
|
21
|
+
IGHJ2*01,,19,,
|
22
|
+
IGHJ3*02,,16,,
|
23
|
+
IGHJ6*02,,29,,
|
24
|
+
IGHJ5*02,,17,,
|
25
|
+
IGHJ1*01,,18,,
|
26
|
+
IGHJ6*03,,29,,
|
@@ -0,0 +1,44 @@
|
|
1
|
+
>IGHD1-1*01
|
2
|
+
GGTACAACTGGAACGAC
|
3
|
+
>IGHD1-20*01
|
4
|
+
GGTATAACTGGAACGAC
|
5
|
+
>IGHD1-26*01
|
6
|
+
GGTATAGTGGGAGCTACTAC
|
7
|
+
>IGHD2-15*01
|
8
|
+
AGGATATTGTAGTGGTGGTAGCTGCTACTCC
|
9
|
+
>IGHD2-2*01
|
10
|
+
AGGATATTGTAGTAGTACCAGCTGCTATGCC
|
11
|
+
>IGHD2-21*01
|
12
|
+
AGCATATTGTGGTGGTGATTGCTATTCC
|
13
|
+
>IGHD2-21*02
|
14
|
+
AGCATATTGTGGTGGTGACTGCTATTCC
|
15
|
+
>IGHD2-8*01
|
16
|
+
AGGATATTGTACTAATGGTGTATGCTATACC
|
17
|
+
>IGHD2-8*02
|
18
|
+
AGGATATTGTACTGGTGGTGTATGCTATACC
|
19
|
+
>IGHD3-10*01
|
20
|
+
GTATTACTATGGTTCGGGGAGTTATTATAAC
|
21
|
+
>IGHD3-10*03
|
22
|
+
GTATTACTATGGTTCAGGGAGTTATTATAAC
|
23
|
+
>IGHD3-16*02
|
24
|
+
GTATTATGATTACGTTTGGGGGAGTTATCGTTATACC
|
25
|
+
>IGHD3-16*03
|
26
|
+
GTATTATGATTACATTTGGGGGAGTTATCGTTATACC
|
27
|
+
>IGHD3-22*01
|
28
|
+
GTATTACTATGATAGTAGTGGTTATTACTAC
|
29
|
+
>IGHD3-3*01
|
30
|
+
GTATTACGATTTTTGGAGTGGTTATTATACC
|
31
|
+
>IGHD4-17*01
|
32
|
+
TGACTACGGTGACTAC
|
33
|
+
>IGHD4-4*01
|
34
|
+
TGACTACAGTAACTAC
|
35
|
+
>IGHD5-5*01
|
36
|
+
GTGGATACAGCTATGGTTAC
|
37
|
+
>IGHD6-13*01
|
38
|
+
GGGTATAGCAGCAGCTGGTAC
|
39
|
+
>IGHD6-19*01
|
40
|
+
GGGTATAGCAGTGGCTGGTAC
|
41
|
+
>IGHD6-25*01
|
42
|
+
GGGTATAGCAGCGGCTAC
|
43
|
+
>IGHD6-6*01
|
44
|
+
GAGTATAGCAGCTCGTCC
|
@@ -0,0 +1,14 @@
|
|
1
|
+
>IGHJ1*01
|
2
|
+
GCTGAATACTTCCAGCACTGGGGCCAGGGCACCCTGGTCACCGTCTCCTCAG
|
3
|
+
>IGHJ2*01
|
4
|
+
CTACTGGTACTTCGATCTCTGGGGCCGTGGCACCCTGGTCACTGTCTCCTCAG
|
5
|
+
>IGHJ3*02
|
6
|
+
TGATGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCAG
|
7
|
+
>IGHJ4*02
|
8
|
+
ACTACTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
9
|
+
>IGHJ5*02
|
10
|
+
ACAACTGGTTCGACCCCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
|
11
|
+
>IGHJ6*02
|
12
|
+
ATTACTACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCAG
|
13
|
+
>IGHJ6*03
|
14
|
+
ATTACTACTACTACTACTACATGGACGTCTGGGGCAAAGGGACCACGGTCACCGTCTCCTCAG
|
@@ -0,0 +1,36 @@
|
|
1
|
+
>IGHV1-18*01
|
2
|
+
CAGGTTCAGCTGGTGCAGTCTGGAGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGTTACACCTTTACCAGCTATGGTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGATGGATCAGCGCTTACAATGGTAACACAAACTATGCACAGAAGCTCCAGGGCAGAGTCACCATGACCACAGACACATCCACGAGCACAGCCTACATGGAGCTGAGGAGCCTGAGATCTGACGACACGGCCGTGTATTACTGTGCGAGAGA
|
3
|
+
>IGHV1-2*02
|
4
|
+
CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACCGGCTACTATATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGATGGATCAACCCTAACAGTGGTGGCACAAACTATGCACAGAAGTTTCAGGGCAGGGTCACCATGACCAGGGACACGTCCATCAGCACAGCCTACATGGAGCTGAGCAGGCTGAGATCTGACGACACGGCCGTGTATTACTGTGCGAGAGA
|
5
|
+
>IGHV2-5*02
|
6
|
+
CAGATCACCTTGAAGGAGTCTGGTCCTACGCTGGTGAAACCCACACAGACCCTCACGCTGACCTGCACCTTCTCTGGGTTCTCACTCAGCACTAGTGGAGTGGGTGTGGGCTGGATCCGTCAGCCCCCAGGAAAGGCCCTGGAGTGGCTTGCACTCATTTATTGGGATGATGATAAGCGCTACAGCCCATCTCTGAAGAGCAGGCTCACCATCACCAAGGACACCTCCAAAAACCAGGTGGTCCTTACAATGACCAACATGGACCCTGTGGACACAGCCACATATTACTGTGCACACAGAC
|
7
|
+
>IGHV2-70D*04
|
8
|
+
CAGGTCACCTTGAAGGAGTCTGGTCCTGCGCTGGTGAAACCCACACAGACCCTCACACTGACCTGCACCTTCTCTGGGTTCTCACTCAGCACTAGTGGAATGCGTGTGAGCTGGATCCGTCAGCCCCCAGGGAAGGCCCTGGAGTGGCTTGCACGCATTGATTGGGATGATGATAAATTCTACAGCACATCTCTGAAGACCAGGCTCACCATCTCCAAGGACACCTCCAAAAACCAGGTGGTCCTTACAATGACCAACATGGACCCTGTGGACACAGCCACGTATTACTGTGCACGGATAC
|
9
|
+
>IGHV3-11*04
|
10
|
+
CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTCAAGCCTGGAGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTGACTACTACATGAGCTGGATCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTTTCATACATTAGTAGTAGTGGTAGTACCATATACTACGCAGACTCTGTGAAGGGCCGATTCACCATCTCCAGGGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGA
|
11
|
+
>IGHV3-23*01
|
12
|
+
GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGTTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGTGCGAAAGA
|
13
|
+
>IGHV3-23*03
|
14
|
+
GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGTTATTTATAGCGGTGGTAGTAGCACATACTATGCAGACTCCGTGAAGGGCCGGTTCACCATCTCCAGAGATAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGTGCGAAAGA
|
15
|
+
>IGHV3-30*04
|
16
|
+
CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATGCTATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATCATATGATGGAAGTAATAAATACTACGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCTGAGGACACGGCTGTGTATTACTGTGCGAGAGA
|
17
|
+
>IGHV3-48*03
|
18
|
+
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGAGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGTTATGAAATGAACTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTTTCATACATTAGTAGTAGTGGTAGTACCATATACTACGCAGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTTTATTACTGTGCGAGAGA
|
19
|
+
>IGHV3-66*02
|
20
|
+
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTCCAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCGTCAGTAGCAACTACATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGTTATTTATAGCGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTTCAAATGAACAGCCTGAGAGCTGAGGACACGGCTGTGTATTACTGTGCGAGAGA
|
21
|
+
>IGHV3-69-1*02
|
22
|
+
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTAAAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTGACTACTACATGAACTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCATCCATTAGTAGTAGTAGTACCATATACTACGCAGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTTTATTACTGTGCGAGAGA
|
23
|
+
>IGHV3-7*05
|
24
|
+
GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTCCAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGTAGCTATTGGATGAGCTGGGTCCGCCAGGCTCCAGGGAAAGGGCTGGAGTGGGTGGCCAACATAAAGCAAGATGGAAGTGAGAAATACTATGTGGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTGTATTACTGTGCGAGAGA
|
25
|
+
>IGHV3-9*02
|
26
|
+
GAAGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGCAGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTCTGATGATTATGCCATGCACTGGGTCCGGCAAGCTCCAGGGAAGGGCCTGGAGTGGGTCTCAGGTATTAGTTGGAATAGTGGTAGCATAGGCTATGCGGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCCCTGTATCTGCAAATGAACAGTCTGAGAGCTGAGGACACGGCCTTGTATTACTGTGCAAAAGATA
|
27
|
+
>IGHV4-34*01
|
28
|
+
CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGTTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTATGGTGGGTCCTTCAGTGGTTACTACTGGAGCTGGATCCGCCAGCCCCCAGGGAAGGGGCTGGAGTGGATTGGGGAAATCAATCATAGTGGAAGCACCAACTACAACCCGTCCCTCAAGAGTCGAGTCACCATATCAGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCCGCGGACACGGCTGTGTATTACTGTGCGAGAGG
|
29
|
+
>IGHV4-39*09
|
30
|
+
CAGCTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTAGTAGTTACTACTGGGGCTGGATCCGCCAGCCCCCAGGGAAGGGGCTGGAGTGGATTGGGAGTATCTATTATAGTGGGAGCACCTACTACAACCCGTCCCTCAAGAGTCGAGTCACCATATCAGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCAGCGGACACGGCCGTGTATTACTGTGCGAGAGA
|
31
|
+
>IGHV4-4*09
|
32
|
+
CAGGTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGTAGTTACTACTGGAGCTGGATCCGGCAGCCCCCAGGGAAGGGACTGGAGTGGATTGGGTACATCTATACCAGTGGGAGCACCAACTACAACCCCTCCCTCAAGAGTCGAGTCACCATATCAGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCCGCAGACACGGCCGTGTATTACTGTGCGAGAGA
|
33
|
+
>IGHV4-61*01
|
34
|
+
CAGGTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCGTCAGCAGTGGTAGTTACTACTGGAGCTGGATCCGGCAGCCCCCAGGGAAGGGACTGGAGTGGATTGGGTATATCTATTACAGTGGGAGCACCAACTACAACCCCTCCCTCAAGAGTCGAGTCACCATATCAGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCTGCGGACACGGCCGTGTATTACTGTGCGAGAGA
|
35
|
+
>IGHV5-51*01
|
36
|
+
GAGGTGCAGCTGGTGCAGTCTGGAGCAGAGGTGAAAAAGCCCGGGGAGTCTCTGAAGATCTCCTGTAAGGGTTCTGGATACAGCTTTACCAGCTACTGGATCGGCTGGGTGCGCCAGATGCCCGGGAAAGGCCTGGAGTGGATGGGGATCATCTATCCTGGTGACTCTGATACCAGATACAGCCCGTCCTTCCAAGGCCAGGTCACCATCTCAGCCGACAAGTCCATCAGCACCGCCTACCTGCAGTGGAGCAGCCTGAAGGCCTCGGACACCGCCATGTATTACTGTGCGAGACA
|