partis-bcr 1.0.11__cp312-cp312-macosx_10_13_universal2.whl → 1.0.11.post1.dev7__cp312-cp312-macosx_10_13_universal2.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (644) hide show
  1. bin/partis +1 -1
  2. bin/partis-test.py +6 -0
  3. bin/partis.py +1 -1
  4. {partis_bcr-1.0.11.data → partis_bcr-1.0.11.post1.dev7.data}/scripts/partis-test.py +6 -0
  5. {partis_bcr-1.0.11.dist-info → partis_bcr-1.0.11.post1.dev7.dist-info}/METADATA +1 -1
  6. {partis_bcr-1.0.11.dist-info → partis_bcr-1.0.11.post1.dev7.dist-info}/RECORD +644 -126
  7. python/recombinator.py +2 -0
  8. python/treegenerator.py +1 -1
  9. test/new-results/annotate-new-simu-annotation-performance/hmm/boundaries/d_3p_del.csv +7 -0
  10. test/new-results/annotate-new-simu-annotation-performance/hmm/boundaries/d_5p_del.csv +8 -0
  11. test/new-results/annotate-new-simu-annotation-performance/hmm/boundaries/dj_insertion.csv +8 -0
  12. test/new-results/annotate-new-simu-annotation-performance/hmm/boundaries/fv_insertion.csv +10 -0
  13. test/new-results/annotate-new-simu-annotation-performance/hmm/boundaries/j_3p_del.csv +4 -0
  14. test/new-results/annotate-new-simu-annotation-performance/hmm/boundaries/j_5p_del.csv +8 -0
  15. test/new-results/annotate-new-simu-annotation-performance/hmm/boundaries/jf_insertion.csv +4 -0
  16. test/new-results/annotate-new-simu-annotation-performance/hmm/boundaries/shm_indel_length.csv +8 -0
  17. test/new-results/annotate-new-simu-annotation-performance/hmm/boundaries/v_3p_del.csv +4 -0
  18. test/new-results/annotate-new-simu-annotation-performance/hmm/boundaries/v_5p_del.csv +4 -0
  19. test/new-results/annotate-new-simu-annotation-performance/hmm/boundaries/vd_insertion.csv +8 -0
  20. test/new-results/annotate-new-simu-annotation-performance/hmm/gene-call/d_allele_fraction_correct_vs_per_gene_support.csv +28 -0
  21. test/new-results/annotate-new-simu-annotation-performance/hmm/gene-call/d_fraction_correct_vs_mute_freq.csv +28 -0
  22. test/new-results/annotate-new-simu-annotation-performance/hmm/gene-call/d_gene.csv +5 -0
  23. test/new-results/annotate-new-simu-annotation-performance/hmm/gene-call/j_allele_fraction_correct_vs_per_gene_support.csv +28 -0
  24. test/new-results/annotate-new-simu-annotation-performance/hmm/gene-call/j_fraction_correct_vs_mute_freq.csv +28 -0
  25. test/new-results/annotate-new-simu-annotation-performance/hmm/gene-call/j_gene.csv +5 -0
  26. test/new-results/annotate-new-simu-annotation-performance/hmm/gene-call/v_allele_fraction_correct_vs_per_gene_support.csv +28 -0
  27. test/new-results/annotate-new-simu-annotation-performance/hmm/gene-call/v_fraction_correct_vs_mute_freq.csv +28 -0
  28. test/new-results/annotate-new-simu-annotation-performance/hmm/gene-call/v_gene.csv +5 -0
  29. test/new-results/annotate-new-simu-annotation-performance/hmm/mutation/cdr3_hamming_to_true_naive.csv +7 -0
  30. test/new-results/annotate-new-simu-annotation-performance/hmm/mutation/cdr3_muted_bases.csv +7 -0
  31. test/new-results/annotate-new-simu-annotation-performance/hmm/mutation/d_hamming_to_true_naive.csv +5 -0
  32. test/new-results/annotate-new-simu-annotation-performance/hmm/mutation/d_muted_bases.csv +6 -0
  33. test/new-results/annotate-new-simu-annotation-performance/hmm/mutation/hamming_to_true_naive.csv +7 -0
  34. test/new-results/annotate-new-simu-annotation-performance/hmm/mutation/j_hamming_to_true_naive.csv +4 -0
  35. test/new-results/annotate-new-simu-annotation-performance/hmm/mutation/j_muted_bases.csv +5 -0
  36. test/new-results/annotate-new-simu-annotation-performance/hmm/mutation/mute_freqs.csv +28 -0
  37. test/new-results/annotate-new-simu-annotation-performance/hmm/mutation/muted_bases.csv +7 -0
  38. test/new-results/annotate-new-simu-annotation-performance/hmm/mutation/v_hamming_to_true_naive.csv +4 -0
  39. test/new-results/annotate-new-simu-annotation-performance/hmm/mutation/v_muted_bases.csv +4 -0
  40. test/new-results/annotate-new-simu-annotation-performance/sw/boundaries/d_3p_del.csv +8 -0
  41. test/new-results/annotate-new-simu-annotation-performance/sw/boundaries/d_5p_del.csv +6 -0
  42. test/new-results/annotate-new-simu-annotation-performance/sw/boundaries/dj_insertion.csv +7 -0
  43. test/new-results/annotate-new-simu-annotation-performance/sw/boundaries/fv_insertion.csv +4 -0
  44. test/new-results/annotate-new-simu-annotation-performance/sw/boundaries/j_3p_del.csv +4 -0
  45. test/new-results/annotate-new-simu-annotation-performance/sw/boundaries/j_5p_del.csv +9 -0
  46. test/new-results/annotate-new-simu-annotation-performance/sw/boundaries/jf_insertion.csv +4 -0
  47. test/new-results/annotate-new-simu-annotation-performance/sw/boundaries/shm_indel_length.csv +8 -0
  48. test/new-results/annotate-new-simu-annotation-performance/sw/boundaries/v_3p_del.csv +4 -0
  49. test/new-results/annotate-new-simu-annotation-performance/sw/boundaries/v_5p_del.csv +4 -0
  50. test/new-results/annotate-new-simu-annotation-performance/sw/boundaries/vd_insertion.csv +6 -0
  51. test/new-results/annotate-new-simu-annotation-performance/sw/gene-call/d_fraction_correct_vs_mute_freq.csv +28 -0
  52. test/new-results/annotate-new-simu-annotation-performance/sw/gene-call/d_gene.csv +5 -0
  53. test/new-results/annotate-new-simu-annotation-performance/sw/gene-call/j_fraction_correct_vs_mute_freq.csv +28 -0
  54. test/new-results/annotate-new-simu-annotation-performance/sw/gene-call/j_gene.csv +5 -0
  55. test/new-results/annotate-new-simu-annotation-performance/sw/gene-call/v_fraction_correct_vs_mute_freq.csv +28 -0
  56. test/new-results/annotate-new-simu-annotation-performance/sw/gene-call/v_gene.csv +5 -0
  57. test/new-results/annotate-new-simu-annotation-performance/sw/mutation/cdr3_hamming_to_true_naive.csv +6 -0
  58. test/new-results/annotate-new-simu-annotation-performance/sw/mutation/cdr3_muted_bases.csv +7 -0
  59. test/new-results/annotate-new-simu-annotation-performance/sw/mutation/d_hamming_to_true_naive.csv +5 -0
  60. test/new-results/annotate-new-simu-annotation-performance/sw/mutation/d_muted_bases.csv +5 -0
  61. test/new-results/annotate-new-simu-annotation-performance/sw/mutation/hamming_to_true_naive.csv +6 -0
  62. test/new-results/annotate-new-simu-annotation-performance/sw/mutation/j_hamming_to_true_naive.csv +4 -0
  63. test/new-results/annotate-new-simu-annotation-performance/sw/mutation/j_muted_bases.csv +6 -0
  64. test/new-results/annotate-new-simu-annotation-performance/sw/mutation/mute_freqs.csv +28 -0
  65. test/new-results/annotate-new-simu-annotation-performance/sw/mutation/muted_bases.csv +7 -0
  66. test/new-results/annotate-new-simu-annotation-performance/sw/mutation/v_hamming_to_true_naive.csv +4 -0
  67. test/new-results/annotate-new-simu-annotation-performance/sw/mutation/v_muted_bases.csv +4 -0
  68. test/new-results/annotate-new-simu.yaml +1 -0
  69. test/new-results/cache-new-partition.csv +59 -0
  70. test/new-results/get-selection-metrics-new-simu.yaml +1 -0
  71. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/boundaries/d_3p_del.csv +7 -0
  72. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/boundaries/d_5p_del.csv +6 -0
  73. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/boundaries/dj_insertion.csv +8 -0
  74. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/boundaries/fv_insertion.csv +10 -0
  75. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/boundaries/j_3p_del.csv +4 -0
  76. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/boundaries/j_5p_del.csv +8 -0
  77. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/boundaries/jf_insertion.csv +4 -0
  78. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/boundaries/shm_indel_length.csv +8 -0
  79. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/boundaries/v_3p_del.csv +4 -0
  80. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/boundaries/v_5p_del.csv +4 -0
  81. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/boundaries/vd_insertion.csv +6 -0
  82. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/gene-call/d_allele_fraction_correct_vs_per_gene_support.csv +28 -0
  83. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/gene-call/d_fraction_correct_vs_mute_freq.csv +28 -0
  84. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/gene-call/d_gene.csv +5 -0
  85. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/gene-call/j_allele_fraction_correct_vs_per_gene_support.csv +28 -0
  86. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/gene-call/j_fraction_correct_vs_mute_freq.csv +28 -0
  87. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/gene-call/j_gene.csv +5 -0
  88. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/gene-call/v_allele_fraction_correct_vs_per_gene_support.csv +28 -0
  89. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/gene-call/v_fraction_correct_vs_mute_freq.csv +28 -0
  90. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/gene-call/v_gene.csv +5 -0
  91. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/mutation/cdr3_hamming_to_true_naive.csv +5 -0
  92. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/mutation/cdr3_muted_bases.csv +5 -0
  93. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/mutation/d_hamming_to_true_naive.csv +4 -0
  94. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/mutation/d_muted_bases.csv +4 -0
  95. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/mutation/hamming_to_true_naive.csv +5 -0
  96. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/mutation/j_hamming_to_true_naive.csv +4 -0
  97. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/mutation/j_muted_bases.csv +5 -0
  98. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/mutation/mute_freqs.csv +28 -0
  99. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/mutation/muted_bases.csv +5 -0
  100. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/mutation/v_hamming_to_true_naive.csv +4 -0
  101. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/mutation/v_muted_bases.csv +4 -0
  102. test/new-results/multi-annotate-new-simu-annotation-performance/sw/boundaries/d_3p_del.csv +8 -0
  103. test/new-results/multi-annotate-new-simu-annotation-performance/sw/boundaries/d_5p_del.csv +6 -0
  104. test/new-results/multi-annotate-new-simu-annotation-performance/sw/boundaries/dj_insertion.csv +7 -0
  105. test/new-results/multi-annotate-new-simu-annotation-performance/sw/boundaries/fv_insertion.csv +4 -0
  106. test/new-results/multi-annotate-new-simu-annotation-performance/sw/boundaries/j_3p_del.csv +4 -0
  107. test/new-results/multi-annotate-new-simu-annotation-performance/sw/boundaries/j_5p_del.csv +9 -0
  108. test/new-results/multi-annotate-new-simu-annotation-performance/sw/boundaries/jf_insertion.csv +4 -0
  109. test/new-results/multi-annotate-new-simu-annotation-performance/sw/boundaries/shm_indel_length.csv +8 -0
  110. test/new-results/multi-annotate-new-simu-annotation-performance/sw/boundaries/v_3p_del.csv +4 -0
  111. test/new-results/multi-annotate-new-simu-annotation-performance/sw/boundaries/v_5p_del.csv +4 -0
  112. test/new-results/multi-annotate-new-simu-annotation-performance/sw/boundaries/vd_insertion.csv +6 -0
  113. test/new-results/multi-annotate-new-simu-annotation-performance/sw/gene-call/d_fraction_correct_vs_mute_freq.csv +28 -0
  114. test/new-results/multi-annotate-new-simu-annotation-performance/sw/gene-call/d_gene.csv +5 -0
  115. test/new-results/multi-annotate-new-simu-annotation-performance/sw/gene-call/j_fraction_correct_vs_mute_freq.csv +28 -0
  116. test/new-results/multi-annotate-new-simu-annotation-performance/sw/gene-call/j_gene.csv +5 -0
  117. test/new-results/multi-annotate-new-simu-annotation-performance/sw/gene-call/v_fraction_correct_vs_mute_freq.csv +28 -0
  118. test/new-results/multi-annotate-new-simu-annotation-performance/sw/gene-call/v_gene.csv +5 -0
  119. test/new-results/multi-annotate-new-simu-annotation-performance/sw/mutation/cdr3_hamming_to_true_naive.csv +6 -0
  120. test/new-results/multi-annotate-new-simu-annotation-performance/sw/mutation/cdr3_muted_bases.csv +7 -0
  121. test/new-results/multi-annotate-new-simu-annotation-performance/sw/mutation/d_hamming_to_true_naive.csv +5 -0
  122. test/new-results/multi-annotate-new-simu-annotation-performance/sw/mutation/d_muted_bases.csv +5 -0
  123. test/new-results/multi-annotate-new-simu-annotation-performance/sw/mutation/hamming_to_true_naive.csv +6 -0
  124. test/new-results/multi-annotate-new-simu-annotation-performance/sw/mutation/j_hamming_to_true_naive.csv +4 -0
  125. test/new-results/multi-annotate-new-simu-annotation-performance/sw/mutation/j_muted_bases.csv +6 -0
  126. test/new-results/multi-annotate-new-simu-annotation-performance/sw/mutation/mute_freqs.csv +28 -0
  127. test/new-results/multi-annotate-new-simu-annotation-performance/sw/mutation/muted_bases.csv +7 -0
  128. test/new-results/multi-annotate-new-simu-annotation-performance/sw/mutation/v_hamming_to_true_naive.csv +4 -0
  129. test/new-results/multi-annotate-new-simu-annotation-performance/sw/mutation/v_muted_bases.csv +4 -0
  130. test/new-results/multi-annotate-new-simu.yaml +1 -0
  131. test/new-results/partition-new-simu/fasttree/iclust-0/fasttree.out +1 -0
  132. test/new-results/partition-new-simu/fasttree/iclust-0/input-seqs.fa +24 -0
  133. test/new-results/partition-new-simu/fasttree/iclust-0/log +23 -0
  134. test/new-results/partition-new-simu/fasttree/iclust-1/fasttree.out +1 -0
  135. test/new-results/partition-new-simu/fasttree/iclust-1/input-seqs.fa +16 -0
  136. test/new-results/partition-new-simu/fasttree/iclust-1/log +23 -0
  137. test/new-results/partition-new-simu/fasttree/iclust-2/fasttree.out +1 -0
  138. test/new-results/partition-new-simu/fasttree/iclust-2/input-seqs.fa +16 -0
  139. test/new-results/partition-new-simu/fasttree/iclust-2/log +22 -0
  140. test/new-results/partition-new-simu-annotation-performance/hmm/boundaries/d_3p_del.csv +7 -0
  141. test/new-results/partition-new-simu-annotation-performance/hmm/boundaries/d_5p_del.csv +6 -0
  142. test/new-results/partition-new-simu-annotation-performance/hmm/boundaries/dj_insertion.csv +8 -0
  143. test/new-results/partition-new-simu-annotation-performance/hmm/boundaries/fv_insertion.csv +10 -0
  144. test/new-results/partition-new-simu-annotation-performance/hmm/boundaries/j_3p_del.csv +4 -0
  145. test/new-results/partition-new-simu-annotation-performance/hmm/boundaries/j_5p_del.csv +8 -0
  146. test/new-results/partition-new-simu-annotation-performance/hmm/boundaries/jf_insertion.csv +4 -0
  147. test/new-results/partition-new-simu-annotation-performance/hmm/boundaries/shm_indel_length.csv +8 -0
  148. test/new-results/partition-new-simu-annotation-performance/hmm/boundaries/v_3p_del.csv +4 -0
  149. test/new-results/partition-new-simu-annotation-performance/hmm/boundaries/v_5p_del.csv +4 -0
  150. test/new-results/partition-new-simu-annotation-performance/hmm/boundaries/vd_insertion.csv +6 -0
  151. test/new-results/partition-new-simu-annotation-performance/hmm/gene-call/d_allele_fraction_correct_vs_per_gene_support.csv +28 -0
  152. test/new-results/partition-new-simu-annotation-performance/hmm/gene-call/d_fraction_correct_vs_mute_freq.csv +28 -0
  153. test/new-results/partition-new-simu-annotation-performance/hmm/gene-call/d_gene.csv +5 -0
  154. test/new-results/partition-new-simu-annotation-performance/hmm/gene-call/j_allele_fraction_correct_vs_per_gene_support.csv +28 -0
  155. test/new-results/partition-new-simu-annotation-performance/hmm/gene-call/j_fraction_correct_vs_mute_freq.csv +28 -0
  156. test/new-results/partition-new-simu-annotation-performance/hmm/gene-call/j_gene.csv +5 -0
  157. test/new-results/partition-new-simu-annotation-performance/hmm/gene-call/v_allele_fraction_correct_vs_per_gene_support.csv +28 -0
  158. test/new-results/partition-new-simu-annotation-performance/hmm/gene-call/v_fraction_correct_vs_mute_freq.csv +28 -0
  159. test/new-results/partition-new-simu-annotation-performance/hmm/gene-call/v_gene.csv +5 -0
  160. test/new-results/partition-new-simu-annotation-performance/hmm/mutation/cdr3_hamming_to_true_naive.csv +5 -0
  161. test/new-results/partition-new-simu-annotation-performance/hmm/mutation/cdr3_muted_bases.csv +5 -0
  162. test/new-results/partition-new-simu-annotation-performance/hmm/mutation/d_hamming_to_true_naive.csv +4 -0
  163. test/new-results/partition-new-simu-annotation-performance/hmm/mutation/d_muted_bases.csv +4 -0
  164. test/new-results/partition-new-simu-annotation-performance/hmm/mutation/hamming_to_true_naive.csv +5 -0
  165. test/new-results/partition-new-simu-annotation-performance/hmm/mutation/j_hamming_to_true_naive.csv +4 -0
  166. test/new-results/partition-new-simu-annotation-performance/hmm/mutation/j_muted_bases.csv +5 -0
  167. test/new-results/partition-new-simu-annotation-performance/hmm/mutation/mute_freqs.csv +28 -0
  168. test/new-results/partition-new-simu-annotation-performance/hmm/mutation/muted_bases.csv +5 -0
  169. test/new-results/partition-new-simu-annotation-performance/hmm/mutation/v_hamming_to_true_naive.csv +4 -0
  170. test/new-results/partition-new-simu-annotation-performance/hmm/mutation/v_muted_bases.csv +4 -0
  171. test/new-results/partition-new-simu-annotation-performance/sw/boundaries/d_3p_del.csv +8 -0
  172. test/new-results/partition-new-simu-annotation-performance/sw/boundaries/d_5p_del.csv +6 -0
  173. test/new-results/partition-new-simu-annotation-performance/sw/boundaries/dj_insertion.csv +7 -0
  174. test/new-results/partition-new-simu-annotation-performance/sw/boundaries/fv_insertion.csv +4 -0
  175. test/new-results/partition-new-simu-annotation-performance/sw/boundaries/j_3p_del.csv +4 -0
  176. test/new-results/partition-new-simu-annotation-performance/sw/boundaries/j_5p_del.csv +9 -0
  177. test/new-results/partition-new-simu-annotation-performance/sw/boundaries/jf_insertion.csv +4 -0
  178. test/new-results/partition-new-simu-annotation-performance/sw/boundaries/shm_indel_length.csv +8 -0
  179. test/new-results/partition-new-simu-annotation-performance/sw/boundaries/v_3p_del.csv +4 -0
  180. test/new-results/partition-new-simu-annotation-performance/sw/boundaries/v_5p_del.csv +4 -0
  181. test/new-results/partition-new-simu-annotation-performance/sw/boundaries/vd_insertion.csv +6 -0
  182. test/new-results/partition-new-simu-annotation-performance/sw/gene-call/d_fraction_correct_vs_mute_freq.csv +28 -0
  183. test/new-results/partition-new-simu-annotation-performance/sw/gene-call/d_gene.csv +5 -0
  184. test/new-results/partition-new-simu-annotation-performance/sw/gene-call/j_fraction_correct_vs_mute_freq.csv +28 -0
  185. test/new-results/partition-new-simu-annotation-performance/sw/gene-call/j_gene.csv +5 -0
  186. test/new-results/partition-new-simu-annotation-performance/sw/gene-call/v_fraction_correct_vs_mute_freq.csv +28 -0
  187. test/new-results/partition-new-simu-annotation-performance/sw/gene-call/v_gene.csv +5 -0
  188. test/new-results/partition-new-simu-annotation-performance/sw/mutation/cdr3_hamming_to_true_naive.csv +6 -0
  189. test/new-results/partition-new-simu-annotation-performance/sw/mutation/cdr3_muted_bases.csv +7 -0
  190. test/new-results/partition-new-simu-annotation-performance/sw/mutation/d_hamming_to_true_naive.csv +5 -0
  191. test/new-results/partition-new-simu-annotation-performance/sw/mutation/d_muted_bases.csv +5 -0
  192. test/new-results/partition-new-simu-annotation-performance/sw/mutation/hamming_to_true_naive.csv +6 -0
  193. test/new-results/partition-new-simu-annotation-performance/sw/mutation/j_hamming_to_true_naive.csv +4 -0
  194. test/new-results/partition-new-simu-annotation-performance/sw/mutation/j_muted_bases.csv +6 -0
  195. test/new-results/partition-new-simu-annotation-performance/sw/mutation/mute_freqs.csv +28 -0
  196. test/new-results/partition-new-simu-annotation-performance/sw/mutation/muted_bases.csv +7 -0
  197. test/new-results/partition-new-simu-annotation-performance/sw/mutation/v_hamming_to_true_naive.csv +4 -0
  198. test/new-results/partition-new-simu-annotation-performance/sw/mutation/v_muted_bases.csv +4 -0
  199. test/new-results/partition-new-simu.yaml +1 -0
  200. test/new-results/run-times.csv +9 -0
  201. test/new-results/seed-partition-new-simu.yaml +1 -0
  202. test/new-results/test/parameters/data/hmm/all-mean-mute-freqs.csv +43 -0
  203. test/new-results/test/parameters/data/hmm/all-mean-n-muted.csv +155 -0
  204. test/new-results/test/parameters/data/hmm/all-probs.csv +44 -0
  205. test/new-results/test/parameters/data/hmm/cluster_size.csv +2 -0
  206. test/new-results/test/parameters/data/hmm/d-mean-mute-freqs.csv +43 -0
  207. test/new-results/test/parameters/data/hmm/d-mean-n-muted.csv +14 -0
  208. test/new-results/test/parameters/data/hmm/d_gene-d_3p_del-probs.csv +34 -0
  209. test/new-results/test/parameters/data/hmm/d_gene-d_5p_del-probs.csv +42 -0
  210. test/new-results/test/parameters/data/hmm/d_gene-probs.csv +20 -0
  211. test/new-results/test/parameters/data/hmm/d_gene-vd_insertion-probs.csv +39 -0
  212. test/new-results/test/parameters/data/hmm/dj_insertion_content.csv +5 -0
  213. test/new-results/test/parameters/data/hmm/fv_insertion-probs.csv +4 -0
  214. test/new-results/test/parameters/data/hmm/germline-sets/igh/extras.csv +23 -0
  215. test/new-results/test/parameters/data/hmm/germline-sets/igh/ighd.fasta +38 -0
  216. test/new-results/test/parameters/data/hmm/germline-sets/igh/ighj.fasta +14 -0
  217. test/new-results/test/parameters/data/hmm/germline-sets/igh/ighv.fasta +30 -0
  218. test/new-results/test/parameters/data/hmm/hmms/IGHD1-20_star_01.yaml +449 -0
  219. test/new-results/test/parameters/data/hmm/hmms/IGHD1-26_star_01.yaml +512 -0
  220. test/new-results/test/parameters/data/hmm/hmms/IGHD2-15_star_01.yaml +743 -0
  221. test/new-results/test/parameters/data/hmm/hmms/IGHD2-21_star_01.yaml +681 -0
  222. test/new-results/test/parameters/data/hmm/hmms/IGHD2-21_star_02.yaml +681 -0
  223. test/new-results/test/parameters/data/hmm/hmms/IGHD2-2_star_01.yaml +743 -0
  224. test/new-results/test/parameters/data/hmm/hmms/IGHD2-8_star_01.yaml +744 -0
  225. test/new-results/test/parameters/data/hmm/hmms/IGHD2-8_star_02.yaml +743 -0
  226. test/new-results/test/parameters/data/hmm/hmms/IGHD3-10_star_01.yaml +743 -0
  227. test/new-results/test/parameters/data/hmm/hmms/IGHD3-10_star_03.yaml +744 -0
  228. test/new-results/test/parameters/data/hmm/hmms/IGHD3-16_star_02.yaml +870 -0
  229. test/new-results/test/parameters/data/hmm/hmms/IGHD3-22_star_01.yaml +743 -0
  230. test/new-results/test/parameters/data/hmm/hmms/IGHD3-3_star_01.yaml +744 -0
  231. test/new-results/test/parameters/data/hmm/hmms/IGHD4-17_star_01.yaml +429 -0
  232. test/new-results/test/parameters/data/hmm/hmms/IGHD4-4_star_01.yaml +428 -0
  233. test/new-results/test/parameters/data/hmm/hmms/IGHD5-5_star_01.yaml +513 -0
  234. test/new-results/test/parameters/data/hmm/hmms/IGHD6-13_star_01.yaml +533 -0
  235. test/new-results/test/parameters/data/hmm/hmms/IGHD6-19_star_01.yaml +534 -0
  236. test/new-results/test/parameters/data/hmm/hmms/IGHD6-6_star_01.yaml +470 -0
  237. test/new-results/test/parameters/data/hmm/hmms/IGHJ1_star_01.yaml +986 -0
  238. test/new-results/test/parameters/data/hmm/hmms/IGHJ2_star_01.yaml +1006 -0
  239. test/new-results/test/parameters/data/hmm/hmms/IGHJ3_star_02.yaml +946 -0
  240. test/new-results/test/parameters/data/hmm/hmms/IGHJ4_star_02.yaml +906 -0
  241. test/new-results/test/parameters/data/hmm/hmms/IGHJ5_star_02.yaml +966 -0
  242. test/new-results/test/parameters/data/hmm/hmms/IGHJ6_star_02.yaml +1206 -0
  243. test/new-results/test/parameters/data/hmm/hmms/IGHJ6_star_03.yaml +1206 -0
  244. test/new-results/test/parameters/data/hmm/hmms/IGHV1-18_star_01.yaml +4484 -0
  245. test/new-results/test/parameters/data/hmm/hmms/IGHV1-2_star_02.yaml +4484 -0
  246. test/new-results/test/parameters/data/hmm/hmms/IGHV2-5_star_02.yaml +4560 -0
  247. test/new-results/test/parameters/data/hmm/hmms/IGHV2-70D_star_04.yaml +4561 -0
  248. test/new-results/test/parameters/data/hmm/hmms/IGHV3-11_star_04.yaml +4484 -0
  249. test/new-results/test/parameters/data/hmm/hmms/IGHV3-23_star_01.yaml +4484 -0
  250. test/new-results/test/parameters/data/hmm/hmms/IGHV3-66_star_02.yaml +4439 -0
  251. test/new-results/test/parameters/data/hmm/hmms/IGHV3-69-1_star_02.yaml +4439 -0
  252. test/new-results/test/parameters/data/hmm/hmms/IGHV3-7_star_05.yaml +4484 -0
  253. test/new-results/test/parameters/data/hmm/hmms/IGHV3-9_star_02.yaml +4516 -0
  254. test/new-results/test/parameters/data/hmm/hmms/IGHV4-34_star_01.yaml +4439 -0
  255. test/new-results/test/parameters/data/hmm/hmms/IGHV4-39_star_09.yaml +4529 -0
  256. test/new-results/test/parameters/data/hmm/hmms/IGHV4-4_star_09.yaml +4438 -0
  257. test/new-results/test/parameters/data/hmm/hmms/IGHV4-61_star_01.yaml +4529 -0
  258. test/new-results/test/parameters/data/hmm/hmms/IGHV5-51_star_01.yaml +4484 -0
  259. test/new-results/test/parameters/data/hmm/j-mean-mute-freqs.csv +43 -0
  260. test/new-results/test/parameters/data/hmm/j-mean-n-muted.csv +25 -0
  261. test/new-results/test/parameters/data/hmm/j_gene-dj_insertion-probs.csv +31 -0
  262. test/new-results/test/parameters/data/hmm/j_gene-j_3p_del-probs.csv +8 -0
  263. test/new-results/test/parameters/data/hmm/j_gene-j_5p_del-probs.csv +31 -0
  264. test/new-results/test/parameters/data/hmm/j_gene-probs.csv +8 -0
  265. test/new-results/test/parameters/data/hmm/jf_insertion-probs.csv +3 -0
  266. test/new-results/test/parameters/data/hmm/mute-freqs/IGHD1-20_star_01.csv +8 -0
  267. test/new-results/test/parameters/data/hmm/mute-freqs/IGHD1-26_star_01.csv +8 -0
  268. test/new-results/test/parameters/data/hmm/mute-freqs/IGHD2-15_star_01.csv +32 -0
  269. test/new-results/test/parameters/data/hmm/mute-freqs/IGHD2-21_star_01.csv +17 -0
  270. test/new-results/test/parameters/data/hmm/mute-freqs/IGHD2-21_star_02.csv +29 -0
  271. test/new-results/test/parameters/data/hmm/mute-freqs/IGHD2-2_star_01.csv +10 -0
  272. test/new-results/test/parameters/data/hmm/mute-freqs/IGHD2-8_star_01.csv +32 -0
  273. test/new-results/test/parameters/data/hmm/mute-freqs/IGHD2-8_star_02.csv +9 -0
  274. test/new-results/test/parameters/data/hmm/mute-freqs/IGHD3-10_star_01.csv +27 -0
  275. test/new-results/test/parameters/data/hmm/mute-freqs/IGHD3-10_star_03.csv +14 -0
  276. test/new-results/test/parameters/data/hmm/mute-freqs/IGHD3-16_star_02.csv +35 -0
  277. test/new-results/test/parameters/data/hmm/mute-freqs/IGHD3-22_star_01.csv +32 -0
  278. test/new-results/test/parameters/data/hmm/mute-freqs/IGHD3-3_star_01.csv +21 -0
  279. test/new-results/test/parameters/data/hmm/mute-freqs/IGHD4-17_star_01.csv +12 -0
  280. test/new-results/test/parameters/data/hmm/mute-freqs/IGHD4-4_star_01.csv +12 -0
  281. test/new-results/test/parameters/data/hmm/mute-freqs/IGHD5-5_star_01.csv +13 -0
  282. test/new-results/test/parameters/data/hmm/mute-freqs/IGHD6-13_star_01.csv +22 -0
  283. test/new-results/test/parameters/data/hmm/mute-freqs/IGHD6-19_star_01.csv +22 -0
  284. test/new-results/test/parameters/data/hmm/mute-freqs/IGHD6-6_star_01.csv +19 -0
  285. test/new-results/test/parameters/data/hmm/mute-freqs/IGHJ1_star_01.csv +52 -0
  286. test/new-results/test/parameters/data/hmm/mute-freqs/IGHJ2_star_01.csv +54 -0
  287. test/new-results/test/parameters/data/hmm/mute-freqs/IGHJ3_star_02.csv +51 -0
  288. test/new-results/test/parameters/data/hmm/mute-freqs/IGHJ4_star_02.csv +49 -0
  289. test/new-results/test/parameters/data/hmm/mute-freqs/IGHJ5_star_02.csv +50 -0
  290. test/new-results/test/parameters/data/hmm/mute-freqs/IGHJ6_star_02.csv +33 -0
  291. test/new-results/test/parameters/data/hmm/mute-freqs/IGHJ6_star_03.csv +40 -0
  292. test/new-results/test/parameters/data/hmm/mute-freqs/IGHV1-18_star_01.csv +297 -0
  293. test/new-results/test/parameters/data/hmm/mute-freqs/IGHV1-2_star_02.csv +296 -0
  294. test/new-results/test/parameters/data/hmm/mute-freqs/IGHV2-5_star_02.csv +66 -0
  295. test/new-results/test/parameters/data/hmm/mute-freqs/IGHV2-70D_star_04.csv +89 -0
  296. test/new-results/test/parameters/data/hmm/mute-freqs/IGHV3-11_star_04.csv +73 -0
  297. test/new-results/test/parameters/data/hmm/mute-freqs/IGHV3-23_star_01.csv +297 -0
  298. test/new-results/test/parameters/data/hmm/mute-freqs/IGHV3-66_star_02.csv +294 -0
  299. test/new-results/test/parameters/data/hmm/mute-freqs/IGHV3-69-1_star_02.csv +38 -0
  300. test/new-results/test/parameters/data/hmm/mute-freqs/IGHV3-7_star_05.csv +70 -0
  301. test/new-results/test/parameters/data/hmm/mute-freqs/IGHV3-9_star_02.csv +40 -0
  302. test/new-results/test/parameters/data/hmm/mute-freqs/IGHV4-34_star_01.csv +40 -0
  303. test/new-results/test/parameters/data/hmm/mute-freqs/IGHV4-39_star_09.csv +40 -0
  304. test/new-results/test/parameters/data/hmm/mute-freqs/IGHV4-4_star_09.csv +59 -0
  305. test/new-results/test/parameters/data/hmm/mute-freqs/IGHV4-61_star_01.csv +300 -0
  306. test/new-results/test/parameters/data/hmm/mute-freqs/IGHV5-51_star_01.csv +296 -0
  307. test/new-results/test/parameters/data/hmm/seq_content.csv +5 -0
  308. test/new-results/test/parameters/data/hmm/v-mean-mute-freqs.csv +43 -0
  309. test/new-results/test/parameters/data/hmm/v-mean-n-muted.csv +122 -0
  310. test/new-results/test/parameters/data/hmm/v_gene-probs.csv +16 -0
  311. test/new-results/test/parameters/data/hmm/v_gene-v_3p_del-probs.csv +24 -0
  312. test/new-results/test/parameters/data/hmm/v_gene-v_5p_del-probs.csv +16 -0
  313. test/new-results/test/parameters/data/hmm/vd_insertion_content.csv +5 -0
  314. test/new-results/test/parameters/data/sw/all-mean-mute-freqs.csv +43 -0
  315. test/new-results/test/parameters/data/sw/all-mean-n-muted.csv +155 -0
  316. test/new-results/test/parameters/data/sw/all-probs.csv +44 -0
  317. test/new-results/test/parameters/data/sw/cluster_size.csv +2 -0
  318. test/new-results/test/parameters/data/sw/d-mean-mute-freqs.csv +43 -0
  319. test/new-results/test/parameters/data/sw/d-mean-n-muted.csv +14 -0
  320. test/new-results/test/parameters/data/sw/d_gene-d_3p_del-probs.csv +40 -0
  321. test/new-results/test/parameters/data/sw/d_gene-d_5p_del-probs.csv +42 -0
  322. test/new-results/test/parameters/data/sw/d_gene-probs.csv +23 -0
  323. test/new-results/test/parameters/data/sw/d_gene-vd_insertion-probs.csv +40 -0
  324. test/new-results/test/parameters/data/sw/dj_insertion_content.csv +5 -0
  325. test/new-results/test/parameters/data/sw/fv_insertion-probs.csv +3 -0
  326. test/new-results/test/parameters/data/sw/germline-sets/igh/extras.csv +26 -0
  327. test/new-results/test/parameters/data/sw/germline-sets/igh/ighd.fasta +44 -0
  328. test/new-results/test/parameters/data/sw/germline-sets/igh/ighj.fasta +14 -0
  329. test/new-results/test/parameters/data/sw/germline-sets/igh/ighv.fasta +36 -0
  330. test/new-results/test/parameters/data/sw/hmms/IGHD1-1_star_01.yaml +450 -0
  331. test/new-results/test/parameters/data/sw/hmms/IGHD1-20_star_01.yaml +449 -0
  332. test/new-results/test/parameters/data/sw/hmms/IGHD1-26_star_01.yaml +512 -0
  333. test/new-results/test/parameters/data/sw/hmms/IGHD2-15_star_01.yaml +744 -0
  334. test/new-results/test/parameters/data/sw/hmms/IGHD2-21_star_01.yaml +681 -0
  335. test/new-results/test/parameters/data/sw/hmms/IGHD2-21_star_02.yaml +681 -0
  336. test/new-results/test/parameters/data/sw/hmms/IGHD2-2_star_01.yaml +743 -0
  337. test/new-results/test/parameters/data/sw/hmms/IGHD2-8_star_01.yaml +744 -0
  338. test/new-results/test/parameters/data/sw/hmms/IGHD2-8_star_02.yaml +743 -0
  339. test/new-results/test/parameters/data/sw/hmms/IGHD3-10_star_01.yaml +743 -0
  340. test/new-results/test/parameters/data/sw/hmms/IGHD3-10_star_03.yaml +744 -0
  341. test/new-results/test/parameters/data/sw/hmms/IGHD3-16_star_02.yaml +869 -0
  342. test/new-results/test/parameters/data/sw/hmms/IGHD3-16_star_03.yaml +869 -0
  343. test/new-results/test/parameters/data/sw/hmms/IGHD3-22_star_01.yaml +743 -0
  344. test/new-results/test/parameters/data/sw/hmms/IGHD3-3_star_01.yaml +744 -0
  345. test/new-results/test/parameters/data/sw/hmms/IGHD4-17_star_01.yaml +429 -0
  346. test/new-results/test/parameters/data/sw/hmms/IGHD4-4_star_01.yaml +428 -0
  347. test/new-results/test/parameters/data/sw/hmms/IGHD5-5_star_01.yaml +513 -0
  348. test/new-results/test/parameters/data/sw/hmms/IGHD6-13_star_01.yaml +533 -0
  349. test/new-results/test/parameters/data/sw/hmms/IGHD6-19_star_01.yaml +533 -0
  350. test/new-results/test/parameters/data/sw/hmms/IGHD6-25_star_01.yaml +470 -0
  351. test/new-results/test/parameters/data/sw/hmms/IGHD6-6_star_01.yaml +470 -0
  352. test/new-results/test/parameters/data/sw/hmms/IGHJ1_star_01.yaml +986 -0
  353. test/new-results/test/parameters/data/sw/hmms/IGHJ2_star_01.yaml +1006 -0
  354. test/new-results/test/parameters/data/sw/hmms/IGHJ3_star_02.yaml +946 -0
  355. test/new-results/test/parameters/data/sw/hmms/IGHJ4_star_02.yaml +906 -0
  356. test/new-results/test/parameters/data/sw/hmms/IGHJ5_star_02.yaml +966 -0
  357. test/new-results/test/parameters/data/sw/hmms/IGHJ6_star_02.yaml +1206 -0
  358. test/new-results/test/parameters/data/sw/hmms/IGHJ6_star_03.yaml +1206 -0
  359. test/new-results/test/parameters/data/sw/hmms/IGHV1-18_star_01.yaml +4484 -0
  360. test/new-results/test/parameters/data/sw/hmms/IGHV1-2_star_02.yaml +4484 -0
  361. test/new-results/test/parameters/data/sw/hmms/IGHV2-5_star_02.yaml +4560 -0
  362. test/new-results/test/parameters/data/sw/hmms/IGHV2-70D_star_04.yaml +4561 -0
  363. test/new-results/test/parameters/data/sw/hmms/IGHV3-11_star_04.yaml +4484 -0
  364. test/new-results/test/parameters/data/sw/hmms/IGHV3-23_star_01.yaml +4484 -0
  365. test/new-results/test/parameters/data/sw/hmms/IGHV3-23_star_03.yaml +4484 -0
  366. test/new-results/test/parameters/data/sw/hmms/IGHV3-30_star_04.yaml +4484 -0
  367. test/new-results/test/parameters/data/sw/hmms/IGHV3-48_star_03.yaml +4484 -0
  368. test/new-results/test/parameters/data/sw/hmms/IGHV3-66_star_02.yaml +4439 -0
  369. test/new-results/test/parameters/data/sw/hmms/IGHV3-69-1_star_02.yaml +4439 -0
  370. test/new-results/test/parameters/data/sw/hmms/IGHV3-7_star_05.yaml +4484 -0
  371. test/new-results/test/parameters/data/sw/hmms/IGHV3-9_star_02.yaml +4516 -0
  372. test/new-results/test/parameters/data/sw/hmms/IGHV4-34_star_01.yaml +4439 -0
  373. test/new-results/test/parameters/data/sw/hmms/IGHV4-39_star_09.yaml +4529 -0
  374. test/new-results/test/parameters/data/sw/hmms/IGHV4-4_star_09.yaml +4438 -0
  375. test/new-results/test/parameters/data/sw/hmms/IGHV4-61_star_01.yaml +4529 -0
  376. test/new-results/test/parameters/data/sw/hmms/IGHV5-51_star_01.yaml +4484 -0
  377. test/new-results/test/parameters/data/sw/j-mean-mute-freqs.csv +43 -0
  378. test/new-results/test/parameters/data/sw/j-mean-n-muted.csv +25 -0
  379. test/new-results/test/parameters/data/sw/j_gene-dj_insertion-probs.csv +32 -0
  380. test/new-results/test/parameters/data/sw/j_gene-j_3p_del-probs.csv +11 -0
  381. test/new-results/test/parameters/data/sw/j_gene-j_5p_del-probs.csv +31 -0
  382. test/new-results/test/parameters/data/sw/j_gene-probs.csv +8 -0
  383. test/new-results/test/parameters/data/sw/jf_insertion-probs.csv +3 -0
  384. test/new-results/test/parameters/data/sw/mute-freqs/IGHD1-1_star_01.csv +4 -0
  385. test/new-results/test/parameters/data/sw/mute-freqs/IGHD1-20_star_01.csv +8 -0
  386. test/new-results/test/parameters/data/sw/mute-freqs/IGHD1-26_star_01.csv +8 -0
  387. test/new-results/test/parameters/data/sw/mute-freqs/IGHD2-15_star_01.csv +32 -0
  388. test/new-results/test/parameters/data/sw/mute-freqs/IGHD2-21_star_01.csv +28 -0
  389. test/new-results/test/parameters/data/sw/mute-freqs/IGHD2-21_star_02.csv +27 -0
  390. test/new-results/test/parameters/data/sw/mute-freqs/IGHD2-2_star_01.csv +27 -0
  391. test/new-results/test/parameters/data/sw/mute-freqs/IGHD2-8_star_01.csv +32 -0
  392. test/new-results/test/parameters/data/sw/mute-freqs/IGHD2-8_star_02.csv +12 -0
  393. test/new-results/test/parameters/data/sw/mute-freqs/IGHD3-10_star_01.csv +29 -0
  394. test/new-results/test/parameters/data/sw/mute-freqs/IGHD3-10_star_03.csv +14 -0
  395. test/new-results/test/parameters/data/sw/mute-freqs/IGHD3-16_star_02.csv +34 -0
  396. test/new-results/test/parameters/data/sw/mute-freqs/IGHD3-16_star_03.csv +20 -0
  397. test/new-results/test/parameters/data/sw/mute-freqs/IGHD3-22_star_01.csv +30 -0
  398. test/new-results/test/parameters/data/sw/mute-freqs/IGHD3-3_star_01.csv +21 -0
  399. test/new-results/test/parameters/data/sw/mute-freqs/IGHD4-17_star_01.csv +12 -0
  400. test/new-results/test/parameters/data/sw/mute-freqs/IGHD4-4_star_01.csv +9 -0
  401. test/new-results/test/parameters/data/sw/mute-freqs/IGHD5-5_star_01.csv +9 -0
  402. test/new-results/test/parameters/data/sw/mute-freqs/IGHD6-13_star_01.csv +20 -0
  403. test/new-results/test/parameters/data/sw/mute-freqs/IGHD6-19_star_01.csv +21 -0
  404. test/new-results/test/parameters/data/sw/mute-freqs/IGHD6-25_star_01.csv +12 -0
  405. test/new-results/test/parameters/data/sw/mute-freqs/IGHD6-6_star_01.csv +19 -0
  406. test/new-results/test/parameters/data/sw/mute-freqs/IGHJ1_star_01.csv +52 -0
  407. test/new-results/test/parameters/data/sw/mute-freqs/IGHJ2_star_01.csv +54 -0
  408. test/new-results/test/parameters/data/sw/mute-freqs/IGHJ3_star_02.csv +51 -0
  409. test/new-results/test/parameters/data/sw/mute-freqs/IGHJ4_star_02.csv +49 -0
  410. test/new-results/test/parameters/data/sw/mute-freqs/IGHJ5_star_02.csv +51 -0
  411. test/new-results/test/parameters/data/sw/mute-freqs/IGHJ6_star_02.csv +33 -0
  412. test/new-results/test/parameters/data/sw/mute-freqs/IGHJ6_star_03.csv +40 -0
  413. test/new-results/test/parameters/data/sw/mute-freqs/IGHV1-18_star_01.csv +297 -0
  414. test/new-results/test/parameters/data/sw/mute-freqs/IGHV1-2_star_02.csv +296 -0
  415. test/new-results/test/parameters/data/sw/mute-freqs/IGHV2-5_star_02.csv +66 -0
  416. test/new-results/test/parameters/data/sw/mute-freqs/IGHV2-70D_star_04.csv +89 -0
  417. test/new-results/test/parameters/data/sw/mute-freqs/IGHV3-11_star_04.csv +73 -0
  418. test/new-results/test/parameters/data/sw/mute-freqs/IGHV3-23_star_01.csv +297 -0
  419. test/new-results/test/parameters/data/sw/mute-freqs/IGHV3-23_star_03.csv +32 -0
  420. test/new-results/test/parameters/data/sw/mute-freqs/IGHV3-30_star_04.csv +38 -0
  421. test/new-results/test/parameters/data/sw/mute-freqs/IGHV3-48_star_03.csv +38 -0
  422. test/new-results/test/parameters/data/sw/mute-freqs/IGHV3-66_star_02.csv +292 -0
  423. test/new-results/test/parameters/data/sw/mute-freqs/IGHV3-69-1_star_02.csv +38 -0
  424. test/new-results/test/parameters/data/sw/mute-freqs/IGHV3-7_star_05.csv +70 -0
  425. test/new-results/test/parameters/data/sw/mute-freqs/IGHV3-9_star_02.csv +40 -0
  426. test/new-results/test/parameters/data/sw/mute-freqs/IGHV4-34_star_01.csv +40 -0
  427. test/new-results/test/parameters/data/sw/mute-freqs/IGHV4-39_star_09.csv +40 -0
  428. test/new-results/test/parameters/data/sw/mute-freqs/IGHV4-4_star_09.csv +59 -0
  429. test/new-results/test/parameters/data/sw/mute-freqs/IGHV4-61_star_01.csv +300 -0
  430. test/new-results/test/parameters/data/sw/mute-freqs/IGHV5-51_star_01.csv +296 -0
  431. test/new-results/test/parameters/data/sw/seq_content.csv +5 -0
  432. test/new-results/test/parameters/data/sw/v-mean-mute-freqs.csv +43 -0
  433. test/new-results/test/parameters/data/sw/v-mean-n-muted.csv +122 -0
  434. test/new-results/test/parameters/data/sw/v_gene-probs.csv +19 -0
  435. test/new-results/test/parameters/data/sw/v_gene-v_3p_del-probs.csv +25 -0
  436. test/new-results/test/parameters/data/sw/v_gene-v_5p_del-probs.csv +29 -0
  437. test/new-results/test/parameters/data/sw/vd_insertion_content.csv +5 -0
  438. test/new-results/test/parameters/data/sw-cache.yaml +1 -0
  439. test/new-results/test/parameters/simu/hmm/all-mean-mute-freqs.csv +3 -3
  440. test/new-results/test/parameters/simu/hmm/all-mean-n-muted.csv +11 -11
  441. test/new-results/test/parameters/simu/hmm/all-probs.csv +13 -3
  442. test/new-results/test/parameters/simu/hmm/cluster_size.csv +1 -1
  443. test/new-results/test/parameters/simu/hmm/d-mean-mute-freqs.csv +6 -6
  444. test/new-results/test/parameters/simu/hmm/d-mean-n-muted.csv +3 -3
  445. test/new-results/test/parameters/simu/hmm/d_gene-d_3p_del-probs.csv +6 -1
  446. test/new-results/test/parameters/simu/hmm/d_gene-d_5p_del-probs.csv +9 -2
  447. test/new-results/test/parameters/simu/hmm/d_gene-probs.csv +5 -1
  448. test/new-results/test/parameters/simu/hmm/d_gene-vd_insertion-probs.csv +10 -2
  449. test/new-results/test/parameters/simu/hmm/dj_insertion_content.csv +4 -4
  450. test/new-results/test/parameters/simu/hmm/fv_insertion-probs.csv +3 -2
  451. test/new-results/test/parameters/simu/hmm/germline-sets/igh/extras.csv +6 -0
  452. test/new-results/test/parameters/simu/hmm/germline-sets/igh/ighd.fasta +8 -0
  453. test/new-results/test/parameters/simu/hmm/germline-sets/igh/ighj.fasta +2 -0
  454. test/new-results/test/parameters/simu/hmm/germline-sets/igh/ighv.fasta +10 -0
  455. test/new-results/test/parameters/simu/hmm/hmms/IGHD1-20_star_01.yaml +449 -0
  456. test/new-results/test/parameters/simu/hmm/hmms/IGHD3-16_star_02.yaml +870 -0
  457. test/new-results/test/parameters/simu/hmm/hmms/IGHD3-22_star_01.yaml +744 -0
  458. test/new-results/test/parameters/simu/hmm/hmms/IGHD6-13_star_01.yaml +267 -268
  459. test/new-results/test/parameters/simu/hmm/hmms/IGHD6-19_star_01.yaml +534 -0
  460. test/new-results/test/parameters/simu/hmm/hmms/IGHJ1_star_01.yaml +986 -0
  461. test/new-results/test/parameters/simu/hmm/hmms/IGHJ4_star_02.yaml +306 -306
  462. test/new-results/test/parameters/simu/hmm/hmms/IGHJ6_star_02.yaml +284 -284
  463. test/new-results/test/parameters/simu/hmm/hmms/IGHV1-18_star_01.yaml +4484 -0
  464. test/new-results/test/parameters/simu/hmm/hmms/IGHV3-23_star_01.yaml +4484 -0
  465. test/new-results/test/parameters/simu/hmm/hmms/IGHV3-66_star_02.yaml +1191 -1191
  466. test/new-results/test/parameters/simu/hmm/hmms/IGHV3-7_star_05.yaml +2 -2
  467. test/new-results/test/parameters/simu/hmm/hmms/IGHV4-4_star_09.yaml +4438 -0
  468. test/new-results/test/parameters/simu/hmm/hmms/IGHV4-61_star_01.yaml +4529 -0
  469. test/new-results/test/parameters/simu/hmm/hmms/IGHV5-51_star_01.yaml +4484 -0
  470. test/new-results/test/parameters/simu/hmm/j-mean-mute-freqs.csv +5 -5
  471. test/new-results/test/parameters/simu/hmm/j-mean-n-muted.csv +4 -4
  472. test/new-results/test/parameters/simu/hmm/j_gene-dj_insertion-probs.csv +9 -2
  473. test/new-results/test/parameters/simu/hmm/j_gene-j_3p_del-probs.csv +2 -1
  474. test/new-results/test/parameters/simu/hmm/j_gene-j_5p_del-probs.csv +7 -2
  475. test/new-results/test/parameters/simu/hmm/j_gene-probs.csv +2 -1
  476. test/new-results/test/parameters/simu/hmm/jf_insertion-probs.csv +1 -1
  477. test/new-results/test/parameters/simu/hmm/mute-freqs/IGHD1-20_star_01.csv +9 -0
  478. test/new-results/test/parameters/simu/hmm/mute-freqs/IGHD3-16_star_02.csv +30 -0
  479. test/new-results/test/parameters/simu/hmm/mute-freqs/IGHD3-22_star_01.csv +32 -0
  480. test/new-results/test/parameters/simu/hmm/mute-freqs/IGHD6-13_star_01.csv +16 -13
  481. test/new-results/test/parameters/simu/hmm/mute-freqs/IGHD6-19_star_01.csv +22 -0
  482. test/new-results/test/parameters/simu/hmm/mute-freqs/IGHJ1_star_01.csv +50 -0
  483. test/new-results/test/parameters/simu/hmm/mute-freqs/IGHJ4_star_02.csv +44 -40
  484. test/new-results/test/parameters/simu/hmm/mute-freqs/IGHJ6_star_02.csv +2 -0
  485. test/new-results/test/parameters/simu/hmm/mute-freqs/IGHV1-18_star_01.csv +297 -0
  486. test/new-results/test/parameters/simu/hmm/mute-freqs/IGHV3-23_star_01.csv +297 -0
  487. test/new-results/test/parameters/simu/hmm/mute-freqs/IGHV3-66_star_02.csv +293 -291
  488. test/new-results/test/parameters/simu/hmm/mute-freqs/IGHV4-4_star_09.csv +291 -0
  489. test/new-results/test/parameters/simu/hmm/mute-freqs/IGHV4-61_star_01.csv +300 -0
  490. test/new-results/test/parameters/simu/hmm/mute-freqs/IGHV5-51_star_01.csv +296 -0
  491. test/new-results/test/parameters/simu/hmm/seq_content.csv +4 -4
  492. test/new-results/test/parameters/simu/hmm/v-mean-mute-freqs.csv +3 -3
  493. test/new-results/test/parameters/simu/hmm/v-mean-n-muted.csv +7 -7
  494. test/new-results/test/parameters/simu/hmm/v_gene-probs.csv +6 -1
  495. test/new-results/test/parameters/simu/hmm/v_gene-v_3p_del-probs.csv +7 -1
  496. test/new-results/test/parameters/simu/hmm/v_gene-v_5p_del-probs.csv +6 -1
  497. test/new-results/test/parameters/simu/hmm/vd_insertion_content.csv +4 -4
  498. test/new-results/test/parameters/simu/sw/all-mean-mute-freqs.csv +3 -3
  499. test/new-results/test/parameters/simu/sw/all-mean-n-muted.csv +8 -8
  500. test/new-results/test/parameters/simu/sw/all-probs.csv +9 -1
  501. test/new-results/test/parameters/simu/sw/cluster_size.csv +1 -1
  502. test/new-results/test/parameters/simu/sw/d-mean-mute-freqs.csv +5 -5
  503. test/new-results/test/parameters/simu/sw/d-mean-n-muted.csv +3 -3
  504. test/new-results/test/parameters/simu/sw/d_gene-d_3p_del-probs.csv +7 -1
  505. test/new-results/test/parameters/simu/sw/d_gene-d_5p_del-probs.csv +7 -1
  506. test/new-results/test/parameters/simu/sw/d_gene-probs.csv +5 -1
  507. test/new-results/test/parameters/simu/sw/d_gene-vd_insertion-probs.csv +8 -1
  508. test/new-results/test/parameters/simu/sw/dj_insertion_content.csv +4 -4
  509. test/new-results/test/parameters/simu/sw/fv_insertion-probs.csv +1 -1
  510. test/new-results/test/parameters/simu/sw/germline-sets/igh/extras.csv +6 -0
  511. test/new-results/test/parameters/simu/sw/germline-sets/igh/ighd.fasta +8 -0
  512. test/new-results/test/parameters/simu/sw/germline-sets/igh/ighj.fasta +2 -0
  513. test/new-results/test/parameters/simu/sw/germline-sets/igh/ighv.fasta +10 -0
  514. test/new-results/test/parameters/simu/sw/hmms/IGHD1-20_star_01.yaml +449 -0
  515. test/new-results/test/parameters/simu/sw/hmms/IGHD3-16_star_02.yaml +870 -0
  516. test/new-results/test/parameters/simu/sw/hmms/IGHD3-22_star_01.yaml +744 -0
  517. test/new-results/test/parameters/simu/sw/hmms/IGHD6-13_star_01.yaml +267 -268
  518. test/new-results/test/parameters/simu/sw/hmms/IGHD6-19_star_01.yaml +534 -0
  519. test/new-results/test/parameters/simu/sw/hmms/IGHJ1_star_01.yaml +986 -0
  520. test/new-results/test/parameters/simu/sw/hmms/IGHJ4_star_02.yaml +306 -306
  521. test/new-results/test/parameters/simu/sw/hmms/IGHJ6_star_02.yaml +22 -22
  522. test/new-results/test/parameters/simu/sw/hmms/IGHV1-18_star_01.yaml +4484 -0
  523. test/new-results/test/parameters/simu/sw/hmms/IGHV3-23_star_01.yaml +4484 -0
  524. test/new-results/test/parameters/simu/sw/hmms/IGHV3-66_star_02.yaml +1191 -1191
  525. test/new-results/test/parameters/simu/sw/hmms/IGHV3-7_star_05.yaml +2 -2
  526. test/new-results/test/parameters/simu/sw/hmms/IGHV4-4_star_09.yaml +4438 -0
  527. test/new-results/test/parameters/simu/sw/hmms/IGHV4-61_star_01.yaml +4529 -0
  528. test/new-results/test/parameters/simu/sw/hmms/IGHV5-51_star_01.yaml +4484 -0
  529. test/new-results/test/parameters/simu/sw/j-mean-mute-freqs.csv +4 -4
  530. test/new-results/test/parameters/simu/sw/j-mean-n-muted.csv +3 -3
  531. test/new-results/test/parameters/simu/sw/j_gene-dj_insertion-probs.csv +7 -1
  532. test/new-results/test/parameters/simu/sw/j_gene-j_3p_del-probs.csv +2 -1
  533. test/new-results/test/parameters/simu/sw/j_gene-j_5p_del-probs.csv +7 -1
  534. test/new-results/test/parameters/simu/sw/j_gene-probs.csv +2 -1
  535. test/new-results/test/parameters/simu/sw/jf_insertion-probs.csv +1 -1
  536. test/new-results/test/parameters/simu/sw/mute-freqs/IGHD1-20_star_01.csv +9 -0
  537. test/new-results/test/parameters/simu/sw/mute-freqs/IGHD3-16_star_02.csv +30 -0
  538. test/new-results/test/parameters/simu/sw/mute-freqs/IGHD3-22_star_01.csv +32 -0
  539. test/new-results/test/parameters/simu/sw/mute-freqs/IGHD6-13_star_01.csv +16 -13
  540. test/new-results/test/parameters/simu/sw/mute-freqs/IGHD6-19_star_01.csv +20 -0
  541. test/new-results/test/parameters/simu/sw/mute-freqs/IGHJ1_star_01.csv +50 -0
  542. test/new-results/test/parameters/simu/sw/mute-freqs/IGHJ4_star_02.csv +48 -40
  543. test/new-results/test/parameters/simu/sw/mute-freqs/IGHV1-18_star_01.csv +297 -0
  544. test/new-results/test/parameters/simu/sw/mute-freqs/IGHV3-23_star_01.csv +297 -0
  545. test/new-results/test/parameters/simu/sw/mute-freqs/IGHV3-66_star_02.csv +293 -291
  546. test/new-results/test/parameters/simu/sw/mute-freqs/IGHV4-4_star_09.csv +291 -0
  547. test/new-results/test/parameters/simu/sw/mute-freqs/IGHV4-61_star_01.csv +300 -0
  548. test/new-results/test/parameters/simu/sw/mute-freqs/IGHV5-51_star_01.csv +296 -0
  549. test/new-results/test/parameters/simu/sw/seq_content.csv +4 -4
  550. test/new-results/test/parameters/simu/sw/v-mean-mute-freqs.csv +3 -3
  551. test/new-results/test/parameters/simu/sw/v-mean-n-muted.csv +7 -7
  552. test/new-results/test/parameters/simu/sw/v_gene-probs.csv +6 -1
  553. test/new-results/test/parameters/simu/sw/v_gene-v_3p_del-probs.csv +7 -1
  554. test/new-results/test/parameters/simu/sw/v_gene-v_5p_del-probs.csv +6 -1
  555. test/new-results/test/parameters/simu/sw/vd_insertion_content.csv +4 -4
  556. test/new-results/test/parameters/simu/sw-cache.yaml +1 -1
  557. test/new-results/test/parameters/simu/true/all-mean-mute-freqs.csv +43 -0
  558. test/new-results/test/parameters/simu/true/all-mean-n-muted.csv +155 -0
  559. test/new-results/test/parameters/simu/true/all-probs.csv +10 -0
  560. test/new-results/test/parameters/simu/true/cluster_size.csv +7 -0
  561. test/new-results/test/parameters/simu/true/d-mean-mute-freqs.csv +43 -0
  562. test/new-results/test/parameters/simu/true/d-mean-n-muted.csv +14 -0
  563. test/new-results/test/parameters/simu/true/d_gene-d_3p_del-probs.csv +9 -0
  564. test/new-results/test/parameters/simu/true/d_gene-d_5p_del-probs.csv +10 -0
  565. test/new-results/test/parameters/simu/true/d_gene-probs.csv +7 -0
  566. test/new-results/test/parameters/simu/true/d_gene-vd_insertion-probs.csv +10 -0
  567. test/new-results/test/parameters/simu/true/dj_insertion_content.csv +5 -0
  568. test/new-results/test/parameters/simu/true/fv_insertion-probs.csv +2 -0
  569. test/new-results/test/parameters/simu/true/germline-sets/igh/extras.csv +11 -0
  570. test/new-results/test/parameters/simu/true/germline-sets/igh/ighd.fasta +12 -0
  571. test/new-results/test/parameters/simu/true/germline-sets/igh/ighj.fasta +6 -0
  572. test/new-results/test/parameters/simu/true/germline-sets/igh/ighv.fasta +14 -0
  573. test/new-results/test/parameters/simu/true/j-mean-mute-freqs.csv +43 -0
  574. test/new-results/test/parameters/simu/true/j-mean-n-muted.csv +25 -0
  575. test/new-results/test/parameters/simu/true/j_gene-dj_insertion-probs.csv +7 -0
  576. test/new-results/test/parameters/simu/true/j_gene-j_3p_del-probs.csv +4 -0
  577. test/new-results/test/parameters/simu/true/j_gene-j_5p_del-probs.csv +9 -0
  578. test/new-results/test/parameters/simu/true/j_gene-probs.csv +4 -0
  579. test/new-results/test/parameters/simu/true/jf_insertion-probs.csv +2 -0
  580. test/new-results/test/parameters/simu/true/mute-freqs/IGHD1-20_star_01.csv +8 -0
  581. test/new-results/test/parameters/simu/true/mute-freqs/IGHD3-16_star_02.csv +30 -0
  582. test/new-results/test/parameters/simu/true/mute-freqs/IGHD3-22_star_01.csv +32 -0
  583. test/new-results/test/parameters/simu/true/mute-freqs/IGHD6-13_star_01.csv +22 -0
  584. test/new-results/test/parameters/simu/true/mute-freqs/IGHD6-19_star_01.csv +22 -0
  585. test/new-results/test/parameters/simu/true/mute-freqs/IGHD6-6_star_01.csv +13 -0
  586. test/new-results/test/parameters/simu/true/mute-freqs/IGHJ1_star_01.csv +50 -0
  587. test/new-results/test/parameters/simu/true/mute-freqs/IGHJ4_star_02.csv +45 -0
  588. test/new-results/test/parameters/simu/true/mute-freqs/IGHJ6_star_02.csv +47 -0
  589. test/new-results/test/parameters/simu/true/mute-freqs/IGHV1-18_star_01.csv +297 -0
  590. test/new-results/test/parameters/simu/true/mute-freqs/IGHV3-23_star_01.csv +297 -0
  591. test/new-results/test/parameters/simu/true/mute-freqs/IGHV3-66_star_02.csv +294 -0
  592. test/new-results/test/parameters/simu/true/mute-freqs/IGHV3-7_star_05.csv +297 -0
  593. test/new-results/test/parameters/simu/true/mute-freqs/IGHV4-4_star_09.csv +291 -0
  594. test/new-results/test/parameters/simu/true/mute-freqs/IGHV4-61_star_01.csv +300 -0
  595. test/new-results/test/parameters/simu/true/mute-freqs/IGHV5-51_star_01.csv +296 -0
  596. test/new-results/test/parameters/simu/true/seq_content.csv +5 -0
  597. test/new-results/test/parameters/simu/true/v-mean-mute-freqs.csv +43 -0
  598. test/new-results/test/parameters/simu/true/v-mean-n-muted.csv +122 -0
  599. test/new-results/test/parameters/simu/true/v_gene-probs.csv +8 -0
  600. test/new-results/test/parameters/simu/true/v_gene-v_3p_del-probs.csv +9 -0
  601. test/new-results/test/parameters/simu/true/v_gene-v_5p_del-probs.csv +8 -0
  602. test/new-results/test/parameters/simu/true/vd_insertion_content.csv +5 -0
  603. test/new-results/test.log +202 -23
  604. test/new-results/vsearch-partition-new-simu.yaml +1 -0
  605. test/paired/new-results/partition-new-simu/fasttree/iclust-0/log +1 -1
  606. test/paired/new-results/partition-new-simu/igh+igk/partition-igh/fasttree/iclust-1/log +1 -1
  607. test/paired/new-results/partition-new-simu/igh+igl/partition-igl/fasttree/iclust-0/log +1 -1
  608. test/paired/new-results/partition-new-simu-annotation-performance/plots/flcount-matrix.svg +107 -107
  609. test/paired/new-results/partition-new-simu-annotation-performance/plots/func-non-func-per-drop-log.svg +83 -83
  610. test/paired/new-results/partition-new-simu-annotation-performance/plots/func-non-func-per-drop.svg +61 -61
  611. test/paired/new-results/partition-new-simu-annotation-performance/plots/paired-seqs-per-seq-after.svg +18 -18
  612. test/paired/new-results/partition-new-simu-annotation-performance/plots/paired-seqs-per-seq-before.svg +24 -24
  613. test/paired/new-results/partition-new-simu-annotation-performance/plots/pseq-matrix.svg +35 -35
  614. test/paired/new-results/partition-new-simu-annotation-performance/plots/seqs-per-droplet.svg +22 -22
  615. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-correct-family.svg +45 -45
  616. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-correct.svg +45 -45
  617. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-mispaired.svg +45 -45
  618. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-multiple.svg +15 -15
  619. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-near-family.svg +15 -15
  620. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-total.svg +47 -47
  621. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-unpaired.svg +48 -48
  622. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance.svg +27 -27
  623. test/paired/new-results/run-times.csv +6 -6
  624. test/paired/new-results/subset-partition-new-simu/isub-0/partition.log +52 -56
  625. test/paired/new-results/subset-partition-new-simu/isub-1/partition.log +47 -51
  626. test/paired/new-results/subset-partition-new-simu/merged-partition.log +28 -32
  627. test/paired/new-results/subset-partition-new-simu/merged-subsets/parameters/igh/sw-cache.yaml +1 -1
  628. test/paired/new-results/subset-partition-new-simu/merged-subsets/parameters/igk/sw-cache.yaml +1 -1
  629. test/paired/new-results/subset-partition-new-simu/merged-subsets/parameters/igl/sw-cache.yaml +1 -1
  630. test/paired/new-results/test.log +132 -141
  631. test/test.py +6 -0
  632. test/trees.nwk +100 -0
  633. {partis_bcr-1.0.11.data → partis_bcr-1.0.11.post1.dev7.data}/scripts/cf-alleles.py +0 -0
  634. {partis_bcr-1.0.11.data → partis_bcr-1.0.11.post1.dev7.data}/scripts/cf-germlines.py +0 -0
  635. {partis_bcr-1.0.11.data → partis_bcr-1.0.11.post1.dev7.data}/scripts/compare-plotdirs.py +0 -0
  636. {partis_bcr-1.0.11.data → partis_bcr-1.0.11.post1.dev7.data}/scripts/extract-pairing-info.py +0 -0
  637. {partis_bcr-1.0.11.data → partis_bcr-1.0.11.post1.dev7.data}/scripts/gctree-run.py +0 -0
  638. {partis_bcr-1.0.11.data → partis_bcr-1.0.11.post1.dev7.data}/scripts/get-naive-probabilities.py +0 -0
  639. {partis_bcr-1.0.11.data → partis_bcr-1.0.11.post1.dev7.data}/scripts/parse-output.py +0 -0
  640. {partis_bcr-1.0.11.data → partis_bcr-1.0.11.post1.dev7.data}/scripts/split-loci.py +0 -0
  641. {partis_bcr-1.0.11.dist-info → partis_bcr-1.0.11.post1.dev7.dist-info}/WHEEL +0 -0
  642. {partis_bcr-1.0.11.dist-info → partis_bcr-1.0.11.post1.dev7.dist-info}/entry_points.txt +0 -0
  643. {partis_bcr-1.0.11.dist-info → partis_bcr-1.0.11.post1.dev7.dist-info}/licenses/COPYING +0 -0
  644. {partis_bcr-1.0.11.dist-info → partis_bcr-1.0.11.post1.dev7.dist-info}/top_level.txt +0 -0
test/new-results/test/parameters/data/sw/hmms/IGHV4-61_star_01.yaml ADDED
@@ -0,0 +1,4529 @@
1
+ !!python/object:python.hmmwriter.HMM
2
+ extras:
3
+ gene_prob: 0.021739130434782608
4
+ overall_mute_freq: 0.08956521739130437
5
+ per_gene_mute_freq: 0.10869373535281465
6
+ name: IGHV4-61_star_01
7
+ states:
8
+ - !!python/object:python.hmmwriter.State
9
+ emissions: null
10
+ extras: {}
11
+ name: init
12
+ transitions:
13
+ IGHV4-61_star_01_0: 0.6666666666666666
14
+ insert_left_N: 0.33333333333333337
15
+ - !!python/object:python.hmmwriter.State
16
+ emissions:
17
+ probs:
18
+ A: 0.25
19
+ C: 0.25
20
+ G: 0.25
21
+ T: 0.25
22
+ track: nukes
23
+ extras:
24
+ ambiguous_char: N
25
+ ambiguous_emission_prob: 0.25
26
+ germline: N
27
+ name: insert_left_N
28
+ transitions:
29
+ IGHV4-61_star_01_0: 0.6666666666666666
30
+ insert_left_N: 0.33333333333333337
31
+ - !!python/object:python.hmmwriter.State
32
+ emissions:
33
+ probs:
34
+ A: 0.03587185532259167
35
+ C: 0.892384434032225
36
+ G: 0.03587185532259167
37
+ T: 0.03587185532259167
38
+ track: nukes
39
+ extras:
40
+ ambiguous_char: N
41
+ ambiguous_emission_prob: 0.25
42
+ germline: C
43
+ name: IGHV4-61_star_01_0
44
+ transitions:
45
+ IGHV4-61_star_01_1: 1.0
46
+ - !!python/object:python.hmmwriter.State
47
+ emissions:
48
+ probs:
49
+ A: 0.892384434032225
50
+ C: 0.03587185532259167
51
+ G: 0.03587185532259167
52
+ T: 0.03587185532259167
53
+ track: nukes
54
+ extras:
55
+ ambiguous_char: N
56
+ ambiguous_emission_prob: 0.25
57
+ germline: A
58
+ name: IGHV4-61_star_01_1
59
+ transitions:
60
+ IGHV4-61_star_01_2: 1.0
61
+ - !!python/object:python.hmmwriter.State
62
+ emissions:
63
+ probs:
64
+ A: 0.03587185532259167
65
+ C: 0.03587185532259167
66
+ G: 0.892384434032225
67
+ T: 0.03587185532259167
68
+ track: nukes
69
+ extras:
70
+ ambiguous_char: N
71
+ ambiguous_emission_prob: 0.25
72
+ germline: G
73
+ name: IGHV4-61_star_01_2
74
+ transitions:
75
+ IGHV4-61_star_01_3: 1.0
76
+ - !!python/object:python.hmmwriter.State
77
+ emissions:
78
+ probs:
79
+ A: 0.03587185532259167
80
+ C: 0.03587185532259167
81
+ G: 0.892384434032225
82
+ T: 0.03587185532259167
83
+ track: nukes
84
+ extras:
85
+ ambiguous_char: N
86
+ ambiguous_emission_prob: 0.25
87
+ germline: G
88
+ name: IGHV4-61_star_01_3
89
+ transitions:
90
+ IGHV4-61_star_01_4: 1.0
91
+ - !!python/object:python.hmmwriter.State
92
+ emissions:
93
+ probs:
94
+ A: 0.03587185532259167
95
+ C: 0.03587185532259167
96
+ G: 0.03587185532259167
97
+ T: 0.892384434032225
98
+ track: nukes
99
+ extras:
100
+ ambiguous_char: N
101
+ ambiguous_emission_prob: 0.25
102
+ germline: T
103
+ name: IGHV4-61_star_01_4
104
+ transitions:
105
+ IGHV4-61_star_01_5: 1.0
106
+ - !!python/object:python.hmmwriter.State
107
+ emissions:
108
+ probs:
109
+ A: 0.03587185532259167
110
+ C: 0.03587185532259167
111
+ G: 0.892384434032225
112
+ T: 0.03587185532259167
113
+ track: nukes
114
+ extras:
115
+ ambiguous_char: N
116
+ ambiguous_emission_prob: 0.25
117
+ germline: G
118
+ name: IGHV4-61_star_01_5
119
+ transitions:
120
+ IGHV4-61_star_01_6: 1.0
121
+ - !!python/object:python.hmmwriter.State
122
+ emissions:
123
+ probs:
124
+ A: 0.03587185532259167
125
+ C: 0.892384434032225
126
+ G: 0.03587185532259167
127
+ T: 0.03587185532259167
128
+ track: nukes
129
+ extras:
130
+ ambiguous_char: N
131
+ ambiguous_emission_prob: 0.25
132
+ germline: C
133
+ name: IGHV4-61_star_01_6
134
+ transitions:
135
+ IGHV4-61_star_01_7: 1.0
136
+ - !!python/object:python.hmmwriter.State
137
+ emissions:
138
+ probs:
139
+ A: 0.892384434032225
140
+ C: 0.03587185532259167
141
+ G: 0.03587185532259167
142
+ T: 0.03587185532259167
143
+ track: nukes
144
+ extras:
145
+ ambiguous_char: N
146
+ ambiguous_emission_prob: 0.25
147
+ germline: A
148
+ name: IGHV4-61_star_01_7
149
+ transitions:
150
+ IGHV4-61_star_01_8: 1.0
151
+ - !!python/object:python.hmmwriter.State
152
+ emissions:
153
+ probs:
154
+ A: 0.03587185532259167
155
+ C: 0.03587185532259167
156
+ G: 0.892384434032225
157
+ T: 0.03587185532259167
158
+ track: nukes
159
+ extras:
160
+ ambiguous_char: N
161
+ ambiguous_emission_prob: 0.25
162
+ germline: G
163
+ name: IGHV4-61_star_01_8
164
+ transitions:
165
+ IGHV4-61_star_01_9: 1.0
166
+ - !!python/object:python.hmmwriter.State
167
+ emissions:
168
+ probs:
169
+ A: 0.03587185532259167
170
+ C: 0.892384434032225
171
+ G: 0.03587185532259167
172
+ T: 0.03587185532259167
173
+ track: nukes
174
+ extras:
175
+ ambiguous_char: N
176
+ ambiguous_emission_prob: 0.25
177
+ germline: C
178
+ name: IGHV4-61_star_01_9
179
+ transitions:
180
+ IGHV4-61_star_01_10: 1.0
181
+ - !!python/object:python.hmmwriter.State
182
+ emissions:
183
+ probs:
184
+ A: 0.03587185532259167
185
+ C: 0.03587185532259167
186
+ G: 0.03587185532259167
187
+ T: 0.892384434032225
188
+ track: nukes
189
+ extras:
190
+ ambiguous_char: N
191
+ ambiguous_emission_prob: 0.25
192
+ germline: T
193
+ name: IGHV4-61_star_01_10
194
+ transitions:
195
+ IGHV4-61_star_01_11: 1.0
196
+ - !!python/object:python.hmmwriter.State
197
+ emissions:
198
+ probs:
199
+ A: 0.03587185532259167
200
+ C: 0.03587185532259167
201
+ G: 0.892384434032225
202
+ T: 0.03587185532259167
203
+ track: nukes
204
+ extras:
205
+ ambiguous_char: N
206
+ ambiguous_emission_prob: 0.25
207
+ germline: G
208
+ name: IGHV4-61_star_01_11
209
+ transitions:
210
+ IGHV4-61_star_01_12: 1.0
211
+ - !!python/object:python.hmmwriter.State
212
+ emissions:
213
+ probs:
214
+ A: 0.03587185532259167
215
+ C: 0.892384434032225
216
+ G: 0.03587185532259167
217
+ T: 0.03587185532259167
218
+ track: nukes
219
+ extras:
220
+ ambiguous_char: N
221
+ ambiguous_emission_prob: 0.25
222
+ germline: C
223
+ name: IGHV4-61_star_01_12
224
+ transitions:
225
+ IGHV4-61_star_01_13: 1.0
226
+ - !!python/object:python.hmmwriter.State
227
+ emissions:
228
+ probs:
229
+ A: 0.892384434032225
230
+ C: 0.03587185532259167
231
+ G: 0.03587185532259167
232
+ T: 0.03587185532259167
233
+ track: nukes
234
+ extras:
235
+ ambiguous_char: N
236
+ ambiguous_emission_prob: 0.25
237
+ germline: A
238
+ name: IGHV4-61_star_01_13
239
+ transitions:
240
+ IGHV4-61_star_01_14: 1.0
241
+ - !!python/object:python.hmmwriter.State
242
+ emissions:
243
+ probs:
244
+ A: 0.0375
245
+ C: 0.0375
246
+ G: 0.8875
247
+ T: 0.0375
248
+ track: nukes
249
+ extras:
250
+ ambiguous_char: N
251
+ ambiguous_emission_prob: 0.25
252
+ germline: G
253
+ name: IGHV4-61_star_01_14
254
+ transitions:
255
+ IGHV4-61_star_01_15: 1.0
256
+ - !!python/object:python.hmmwriter.State
257
+ emissions:
258
+ probs:
259
+ A: 0.0375
260
+ C: 0.0375
261
+ G: 0.8875
262
+ T: 0.0375
263
+ track: nukes
264
+ extras:
265
+ ambiguous_char: N
266
+ ambiguous_emission_prob: 0.25
267
+ germline: G
268
+ name: IGHV4-61_star_01_15
269
+ transitions:
270
+ IGHV4-61_star_01_16: 1.0
271
+ - !!python/object:python.hmmwriter.State
272
+ emissions:
273
+ probs:
274
+ A: 0.892384434032225
275
+ C: 0.03587185532259167
276
+ G: 0.03587185532259167
277
+ T: 0.03587185532259167
278
+ track: nukes
279
+ extras:
280
+ ambiguous_char: N
281
+ ambiguous_emission_prob: 0.25
282
+ germline: A
283
+ name: IGHV4-61_star_01_16
284
+ transitions:
285
+ IGHV4-61_star_01_17: 1.0
286
+ - !!python/object:python.hmmwriter.State
287
+ emissions:
288
+ probs:
289
+ A: 0.03587185532259167
290
+ C: 0.03587185532259167
291
+ G: 0.892384434032225
292
+ T: 0.03587185532259167
293
+ track: nukes
294
+ extras:
295
+ ambiguous_char: N
296
+ ambiguous_emission_prob: 0.25
297
+ germline: G
298
+ name: IGHV4-61_star_01_17
299
+ transitions:
300
+ IGHV4-61_star_01_18: 1.0
301
+ - !!python/object:python.hmmwriter.State
302
+ emissions:
303
+ probs:
304
+ A: 0.0375
305
+ C: 0.0375
306
+ G: 0.0375
307
+ T: 0.8875
308
+ track: nukes
309
+ extras:
310
+ ambiguous_char: N
311
+ ambiguous_emission_prob: 0.25
312
+ germline: T
313
+ name: IGHV4-61_star_01_18
314
+ transitions:
315
+ IGHV4-61_star_01_19: 1.0
316
+ - !!python/object:python.hmmwriter.State
317
+ emissions:
318
+ probs:
319
+ A: 0.03587185532259167
320
+ C: 0.892384434032225
321
+ G: 0.03587185532259167
322
+ T: 0.03587185532259167
323
+ track: nukes
324
+ extras:
325
+ ambiguous_char: N
326
+ ambiguous_emission_prob: 0.25
327
+ germline: C
328
+ name: IGHV4-61_star_01_19
329
+ transitions:
330
+ IGHV4-61_star_01_20: 1.0
331
+ - !!python/object:python.hmmwriter.State
332
+ emissions:
333
+ probs:
334
+ A: 0.03587185532259167
335
+ C: 0.03587185532259167
336
+ G: 0.892384434032225
337
+ T: 0.03587185532259167
338
+ track: nukes
339
+ extras:
340
+ ambiguous_char: N
341
+ ambiguous_emission_prob: 0.25
342
+ germline: G
343
+ name: IGHV4-61_star_01_20
344
+ transitions:
345
+ IGHV4-61_star_01_21: 1.0
346
+ - !!python/object:python.hmmwriter.State
347
+ emissions:
348
+ probs:
349
+ A: 0.03587185532259167
350
+ C: 0.03587185532259167
351
+ G: 0.892384434032225
352
+ T: 0.03587185532259167
353
+ track: nukes
354
+ extras:
355
+ ambiguous_char: N
356
+ ambiguous_emission_prob: 0.25
357
+ germline: G
358
+ name: IGHV4-61_star_01_21
359
+ transitions:
360
+ IGHV4-61_star_01_22: 1.0
361
+ - !!python/object:python.hmmwriter.State
362
+ emissions:
363
+ probs:
364
+ A: 0.03587185532259167
365
+ C: 0.03587185532259167
366
+ G: 0.892384434032225
367
+ T: 0.03587185532259167
368
+ track: nukes
369
+ extras:
370
+ ambiguous_char: N
371
+ ambiguous_emission_prob: 0.25
372
+ germline: G
373
+ name: IGHV4-61_star_01_22
374
+ transitions:
375
+ IGHV4-61_star_01_23: 1.0
376
+ - !!python/object:python.hmmwriter.State
377
+ emissions:
378
+ probs:
379
+ A: 0.03587185532259167
380
+ C: 0.892384434032225
381
+ G: 0.03587185532259167
382
+ T: 0.03587185532259167
383
+ track: nukes
384
+ extras:
385
+ ambiguous_char: N
386
+ ambiguous_emission_prob: 0.25
387
+ germline: C
388
+ name: IGHV4-61_star_01_23
389
+ transitions:
390
+ IGHV4-61_star_01_24: 1.0
391
+ - !!python/object:python.hmmwriter.State
392
+ emissions:
393
+ probs:
394
+ A: 0.03587185532259167
395
+ C: 0.892384434032225
396
+ G: 0.03587185532259167
397
+ T: 0.03587185532259167
398
+ track: nukes
399
+ extras:
400
+ ambiguous_char: N
401
+ ambiguous_emission_prob: 0.25
402
+ germline: C
403
+ name: IGHV4-61_star_01_24
404
+ transitions:
405
+ IGHV4-61_star_01_25: 1.0
406
+ - !!python/object:python.hmmwriter.State
407
+ emissions:
408
+ probs:
409
+ A: 0.03587185532259167
410
+ C: 0.892384434032225
411
+ G: 0.03587185532259167
412
+ T: 0.03587185532259167
413
+ track: nukes
414
+ extras:
415
+ ambiguous_char: N
416
+ ambiguous_emission_prob: 0.25
417
+ germline: C
418
+ name: IGHV4-61_star_01_25
419
+ transitions:
420
+ IGHV4-61_star_01_26: 1.0
421
+ - !!python/object:python.hmmwriter.State
422
+ emissions:
423
+ probs:
424
+ A: 0.892384434032225
425
+ C: 0.03587185532259167
426
+ G: 0.03587185532259167
427
+ T: 0.03587185532259167
428
+ track: nukes
429
+ extras:
430
+ ambiguous_char: N
431
+ ambiguous_emission_prob: 0.25
432
+ germline: A
433
+ name: IGHV4-61_star_01_26
434
+ transitions:
435
+ IGHV4-61_star_01_27: 1.0
436
+ - !!python/object:python.hmmwriter.State
437
+ emissions:
438
+ probs:
439
+ A: 0.0375
440
+ C: 0.0375
441
+ G: 0.8875
442
+ T: 0.0375
443
+ track: nukes
444
+ extras:
445
+ ambiguous_char: N
446
+ ambiguous_emission_prob: 0.25
447
+ germline: G
448
+ name: IGHV4-61_star_01_27
449
+ transitions:
450
+ IGHV4-61_star_01_28: 1.0
451
+ - !!python/object:python.hmmwriter.State
452
+ emissions:
453
+ probs:
454
+ A: 0.0375
455
+ C: 0.0375
456
+ G: 0.8875
457
+ T: 0.0375
458
+ track: nukes
459
+ extras:
460
+ ambiguous_char: N
461
+ ambiguous_emission_prob: 0.25
462
+ germline: G
463
+ name: IGHV4-61_star_01_28
464
+ transitions:
465
+ IGHV4-61_star_01_29: 1.0
466
+ - !!python/object:python.hmmwriter.State
467
+ emissions:
468
+ probs:
469
+ A: 0.892384434032225
470
+ C: 0.03587185532259167
471
+ G: 0.03587185532259167
472
+ T: 0.03587185532259167
473
+ track: nukes
474
+ extras:
475
+ ambiguous_char: N
476
+ ambiguous_emission_prob: 0.25
477
+ germline: A
478
+ name: IGHV4-61_star_01_29
479
+ transitions:
480
+ IGHV4-61_star_01_30: 1.0
481
+ - !!python/object:python.hmmwriter.State
482
+ emissions:
483
+ probs:
484
+ A: 0.03587185532259167
485
+ C: 0.892384434032225
486
+ G: 0.03587185532259167
487
+ T: 0.03587185532259167
488
+ track: nukes
489
+ extras:
490
+ ambiguous_char: N
491
+ ambiguous_emission_prob: 0.25
492
+ germline: C
493
+ name: IGHV4-61_star_01_30
494
+ transitions:
495
+ IGHV4-61_star_01_31: 1.0
496
+ - !!python/object:python.hmmwriter.State
497
+ emissions:
498
+ probs:
499
+ A: 0.03587185532259167
500
+ C: 0.03587185532259167
501
+ G: 0.03587185532259167
502
+ T: 0.892384434032225
503
+ track: nukes
504
+ extras:
505
+ ambiguous_char: N
506
+ ambiguous_emission_prob: 0.25
507
+ germline: T
508
+ name: IGHV4-61_star_01_31
509
+ transitions:
510
+ IGHV4-61_star_01_32: 1.0
511
+ - !!python/object:python.hmmwriter.State
512
+ emissions:
513
+ probs:
514
+ A: 0.0375
515
+ C: 0.0375
516
+ G: 0.8875
517
+ T: 0.0375
518
+ track: nukes
519
+ extras:
520
+ ambiguous_char: N
521
+ ambiguous_emission_prob: 0.25
522
+ germline: G
523
+ name: IGHV4-61_star_01_32
524
+ transitions:
525
+ IGHV4-61_star_01_33: 1.0
526
+ - !!python/object:python.hmmwriter.State
527
+ emissions:
528
+ probs:
529
+ A: 0.03587185532259167
530
+ C: 0.03587185532259167
531
+ G: 0.892384434032225
532
+ T: 0.03587185532259167
533
+ track: nukes
534
+ extras:
535
+ ambiguous_char: N
536
+ ambiguous_emission_prob: 0.25
537
+ germline: G
538
+ name: IGHV4-61_star_01_33
539
+ transitions:
540
+ IGHV4-61_star_01_34: 1.0
541
+ - !!python/object:python.hmmwriter.State
542
+ emissions:
543
+ probs:
544
+ A: 0.0375
545
+ C: 0.0375
546
+ G: 0.0375
547
+ T: 0.8875
548
+ track: nukes
549
+ extras:
550
+ ambiguous_char: N
551
+ ambiguous_emission_prob: 0.25
552
+ germline: T
553
+ name: IGHV4-61_star_01_34
554
+ transitions:
555
+ IGHV4-61_star_01_35: 1.0
556
+ - !!python/object:python.hmmwriter.State
557
+ emissions:
558
+ probs:
559
+ A: 0.03587185532259167
560
+ C: 0.03587185532259167
561
+ G: 0.892384434032225
562
+ T: 0.03587185532259167
563
+ track: nukes
564
+ extras:
565
+ ambiguous_char: N
566
+ ambiguous_emission_prob: 0.25
567
+ germline: G
568
+ name: IGHV4-61_star_01_35
569
+ transitions:
570
+ IGHV4-61_star_01_36: 1.0
571
+ - !!python/object:python.hmmwriter.State
572
+ emissions:
573
+ probs:
574
+ A: 0.892384434032225
575
+ C: 0.03587185532259167
576
+ G: 0.03587185532259167
577
+ T: 0.03587185532259167
578
+ track: nukes
579
+ extras:
580
+ ambiguous_char: N
581
+ ambiguous_emission_prob: 0.25
582
+ germline: A
583
+ name: IGHV4-61_star_01_36
584
+ transitions:
585
+ IGHV4-61_star_01_37: 1.0
586
+ - !!python/object:python.hmmwriter.State
587
+ emissions:
588
+ probs:
589
+ A: 0.892384434032225
590
+ C: 0.03587185532259167
591
+ G: 0.03587185532259167
592
+ T: 0.03587185532259167
593
+ track: nukes
594
+ extras:
595
+ ambiguous_char: N
596
+ ambiguous_emission_prob: 0.25
597
+ germline: A
598
+ name: IGHV4-61_star_01_37
599
+ transitions:
600
+ IGHV4-61_star_01_38: 1.0
601
+ - !!python/object:python.hmmwriter.State
602
+ emissions:
603
+ probs:
604
+ A: 0.03587185532259167
605
+ C: 0.03587185532259167
606
+ G: 0.892384434032225
607
+ T: 0.03587185532259167
608
+ track: nukes
609
+ extras:
610
+ ambiguous_char: N
611
+ ambiguous_emission_prob: 0.25
612
+ germline: G
613
+ name: IGHV4-61_star_01_38
614
+ transitions:
615
+ IGHV4-61_star_01_39: 1.0
616
+ - !!python/object:python.hmmwriter.State
617
+ emissions:
618
+ probs:
619
+ A: 0.0375
620
+ C: 0.8875
621
+ G: 0.0375
622
+ T: 0.0375
623
+ track: nukes
624
+ extras:
625
+ ambiguous_char: N
626
+ ambiguous_emission_prob: 0.25
627
+ germline: C
628
+ name: IGHV4-61_star_01_39
629
+ transitions:
630
+ IGHV4-61_star_01_40: 1.0
631
+ - !!python/object:python.hmmwriter.State
632
+ emissions:
633
+ probs:
634
+ A: 0.03587185532259167
635
+ C: 0.892384434032225
636
+ G: 0.03587185532259167
637
+ T: 0.03587185532259167
638
+ track: nukes
639
+ extras:
640
+ ambiguous_char: N
641
+ ambiguous_emission_prob: 0.25
642
+ germline: C
643
+ name: IGHV4-61_star_01_40
644
+ transitions:
645
+ IGHV4-61_star_01_41: 1.0
646
+ - !!python/object:python.hmmwriter.State
647
+ emissions:
648
+ probs:
649
+ A: 0.03587185532259167
650
+ C: 0.03587185532259167
651
+ G: 0.03587185532259167
652
+ T: 0.892384434032225
653
+ track: nukes
654
+ extras:
655
+ ambiguous_char: N
656
+ ambiguous_emission_prob: 0.25
657
+ germline: T
658
+ name: IGHV4-61_star_01_41
659
+ transitions:
660
+ IGHV4-61_star_01_42: 1.0
661
+ - !!python/object:python.hmmwriter.State
662
+ emissions:
663
+ probs:
664
+ A: 0.03587185532259167
665
+ C: 0.03587185532259167
666
+ G: 0.03587185532259167
667
+ T: 0.892384434032225
668
+ track: nukes
669
+ extras:
670
+ ambiguous_char: N
671
+ ambiguous_emission_prob: 0.25
672
+ germline: T
673
+ name: IGHV4-61_star_01_42
674
+ transitions:
675
+ IGHV4-61_star_01_43: 1.0
676
+ - !!python/object:python.hmmwriter.State
677
+ emissions:
678
+ probs:
679
+ A: 0.03587185532259167
680
+ C: 0.892384434032225
681
+ G: 0.03587185532259167
682
+ T: 0.03587185532259167
683
+ track: nukes
684
+ extras:
685
+ ambiguous_char: N
686
+ ambiguous_emission_prob: 0.25
687
+ germline: C
688
+ name: IGHV4-61_star_01_43
689
+ transitions:
690
+ IGHV4-61_star_01_44: 1.0
691
+ - !!python/object:python.hmmwriter.State
692
+ emissions:
693
+ probs:
694
+ A: 0.03587185532259167
695
+ C: 0.03587185532259167
696
+ G: 0.892384434032225
697
+ T: 0.03587185532259167
698
+ track: nukes
699
+ extras:
700
+ ambiguous_char: N
701
+ ambiguous_emission_prob: 0.25
702
+ germline: G
703
+ name: IGHV4-61_star_01_44
704
+ transitions:
705
+ IGHV4-61_star_01_45: 1.0
706
+ - !!python/object:python.hmmwriter.State
707
+ emissions:
708
+ probs:
709
+ A: 0.0375
710
+ C: 0.0375
711
+ G: 0.8875
712
+ T: 0.0375
713
+ track: nukes
714
+ extras:
715
+ ambiguous_char: N
716
+ ambiguous_emission_prob: 0.25
717
+ germline: G
718
+ name: IGHV4-61_star_01_45
719
+ transitions:
720
+ IGHV4-61_star_01_46: 1.0
721
+ - !!python/object:python.hmmwriter.State
722
+ emissions:
723
+ probs:
724
+ A: 0.892384434032225
725
+ C: 0.03587185532259167
726
+ G: 0.03587185532259167
727
+ T: 0.03587185532259167
728
+ track: nukes
729
+ extras:
730
+ ambiguous_char: N
731
+ ambiguous_emission_prob: 0.25
732
+ germline: A
733
+ name: IGHV4-61_star_01_46
734
+ transitions:
735
+ IGHV4-61_star_01_47: 1.0
736
+ - !!python/object:python.hmmwriter.State
737
+ emissions:
738
+ probs:
739
+ A: 0.0375
740
+ C: 0.0375
741
+ G: 0.8875
742
+ T: 0.0375
743
+ track: nukes
744
+ extras:
745
+ ambiguous_char: N
746
+ ambiguous_emission_prob: 0.25
747
+ germline: G
748
+ name: IGHV4-61_star_01_47
749
+ transitions:
750
+ IGHV4-61_star_01_48: 1.0
751
+ - !!python/object:python.hmmwriter.State
752
+ emissions:
753
+ probs:
754
+ A: 0.892384434032225
755
+ C: 0.03587185532259167
756
+ G: 0.03587185532259167
757
+ T: 0.03587185532259167
758
+ track: nukes
759
+ extras:
760
+ ambiguous_char: N
761
+ ambiguous_emission_prob: 0.25
762
+ germline: A
763
+ name: IGHV4-61_star_01_48
764
+ transitions:
765
+ IGHV4-61_star_01_49: 1.0
766
+ - !!python/object:python.hmmwriter.State
767
+ emissions:
768
+ probs:
769
+ A: 0.03587185532259167
770
+ C: 0.892384434032225
771
+ G: 0.03587185532259167
772
+ T: 0.03587185532259167
773
+ track: nukes
774
+ extras:
775
+ ambiguous_char: N
776
+ ambiguous_emission_prob: 0.25
777
+ germline: C
778
+ name: IGHV4-61_star_01_49
779
+ transitions:
780
+ IGHV4-61_star_01_50: 1.0
781
+ - !!python/object:python.hmmwriter.State
782
+ emissions:
783
+ probs:
784
+ A: 0.03587185532259167
785
+ C: 0.892384434032225
786
+ G: 0.03587185532259167
787
+ T: 0.03587185532259167
788
+ track: nukes
789
+ extras:
790
+ ambiguous_char: N
791
+ ambiguous_emission_prob: 0.25
792
+ germline: C
793
+ name: IGHV4-61_star_01_50
794
+ transitions:
795
+ IGHV4-61_star_01_51: 1.0
796
+ - !!python/object:python.hmmwriter.State
797
+ emissions:
798
+ probs:
799
+ A: 0.03587185532259167
800
+ C: 0.892384434032225
801
+ G: 0.03587185532259167
802
+ T: 0.03587185532259167
803
+ track: nukes
804
+ extras:
805
+ ambiguous_char: N
806
+ ambiguous_emission_prob: 0.25
807
+ germline: C
808
+ name: IGHV4-61_star_01_51
809
+ transitions:
810
+ IGHV4-61_star_01_52: 1.0
811
+ - !!python/object:python.hmmwriter.State
812
+ emissions:
813
+ probs:
814
+ A: 0.03587185532259167
815
+ C: 0.03587185532259167
816
+ G: 0.03587185532259167
817
+ T: 0.892384434032225
818
+ track: nukes
819
+ extras:
820
+ ambiguous_char: N
821
+ ambiguous_emission_prob: 0.25
822
+ germline: T
823
+ name: IGHV4-61_star_01_52
824
+ transitions:
825
+ IGHV4-61_star_01_53: 1.0
826
+ - !!python/object:python.hmmwriter.State
827
+ emissions:
828
+ probs:
829
+ A: 0.03587185532259167
830
+ C: 0.03587185532259167
831
+ G: 0.892384434032225
832
+ T: 0.03587185532259167
833
+ track: nukes
834
+ extras:
835
+ ambiguous_char: N
836
+ ambiguous_emission_prob: 0.25
837
+ germline: G
838
+ name: IGHV4-61_star_01_53
839
+ transitions:
840
+ IGHV4-61_star_01_54: 1.0
841
+ - !!python/object:python.hmmwriter.State
842
+ emissions:
843
+ probs:
844
+ A: 0.03587185532259167
845
+ C: 0.03587185532259167
846
+ G: 0.03587185532259167
847
+ T: 0.892384434032225
848
+ track: nukes
849
+ extras:
850
+ ambiguous_char: N
851
+ ambiguous_emission_prob: 0.25
852
+ germline: T
853
+ name: IGHV4-61_star_01_54
854
+ transitions:
855
+ IGHV4-61_star_01_55: 1.0
856
+ - !!python/object:python.hmmwriter.State
857
+ emissions:
858
+ probs:
859
+ A: 0.03587185532259167
860
+ C: 0.892384434032225
861
+ G: 0.03587185532259167
862
+ T: 0.03587185532259167
863
+ track: nukes
864
+ extras:
865
+ ambiguous_char: N
866
+ ambiguous_emission_prob: 0.25
867
+ germline: C
868
+ name: IGHV4-61_star_01_55
869
+ transitions:
870
+ IGHV4-61_star_01_56: 1.0
871
+ - !!python/object:python.hmmwriter.State
872
+ emissions:
873
+ probs:
874
+ A: 0.03587185532259167
875
+ C: 0.892384434032225
876
+ G: 0.03587185532259167
877
+ T: 0.03587185532259167
878
+ track: nukes
879
+ extras:
880
+ ambiguous_char: N
881
+ ambiguous_emission_prob: 0.25
882
+ germline: C
883
+ name: IGHV4-61_star_01_56
884
+ transitions:
885
+ IGHV4-61_star_01_57: 1.0
886
+ - !!python/object:python.hmmwriter.State
887
+ emissions:
888
+ probs:
889
+ A: 0.03587185532259167
890
+ C: 0.892384434032225
891
+ G: 0.03587185532259167
892
+ T: 0.03587185532259167
893
+ track: nukes
894
+ extras:
895
+ ambiguous_char: N
896
+ ambiguous_emission_prob: 0.25
897
+ germline: C
898
+ name: IGHV4-61_star_01_57
899
+ transitions:
900
+ IGHV4-61_star_01_58: 1.0
901
+ - !!python/object:python.hmmwriter.State
902
+ emissions:
903
+ probs:
904
+ A: 0.03587185532259167
905
+ C: 0.03587185532259167
906
+ G: 0.03587185532259167
907
+ T: 0.892384434032225
908
+ track: nukes
909
+ extras:
910
+ ambiguous_char: N
911
+ ambiguous_emission_prob: 0.25
912
+ germline: T
913
+ name: IGHV4-61_star_01_58
914
+ transitions:
915
+ IGHV4-61_star_01_59: 1.0
916
+ - !!python/object:python.hmmwriter.State
917
+ emissions:
918
+ probs:
919
+ A: 0.03587185532259167
920
+ C: 0.892384434032225
921
+ G: 0.03587185532259167
922
+ T: 0.03587185532259167
923
+ track: nukes
924
+ extras:
925
+ ambiguous_char: N
926
+ ambiguous_emission_prob: 0.25
927
+ germline: C
928
+ name: IGHV4-61_star_01_59
929
+ transitions:
930
+ IGHV4-61_star_01_60: 1.0
931
+ - !!python/object:python.hmmwriter.State
932
+ emissions:
933
+ probs:
934
+ A: 0.892384434032225
935
+ C: 0.03587185532259167
936
+ G: 0.03587185532259167
937
+ T: 0.03587185532259167
938
+ track: nukes
939
+ extras:
940
+ ambiguous_char: N
941
+ ambiguous_emission_prob: 0.25
942
+ germline: A
943
+ name: IGHV4-61_star_01_60
944
+ transitions:
945
+ IGHV4-61_star_01_61: 1.0
946
+ - !!python/object:python.hmmwriter.State
947
+ emissions:
948
+ probs:
949
+ A: 0.03587185532259167
950
+ C: 0.892384434032225
951
+ G: 0.03587185532259167
952
+ T: 0.03587185532259167
953
+ track: nukes
954
+ extras:
955
+ ambiguous_char: N
956
+ ambiguous_emission_prob: 0.25
957
+ germline: C
958
+ name: IGHV4-61_star_01_61
959
+ transitions:
960
+ IGHV4-61_star_01_62: 1.0
961
+ - !!python/object:python.hmmwriter.State
962
+ emissions:
963
+ probs:
964
+ A: 0.03587185532259167
965
+ C: 0.892384434032225
966
+ G: 0.03587185532259167
967
+ T: 0.03587185532259167
968
+ track: nukes
969
+ extras:
970
+ ambiguous_char: N
971
+ ambiguous_emission_prob: 0.25
972
+ germline: C
973
+ name: IGHV4-61_star_01_62
974
+ transitions:
975
+ IGHV4-61_star_01_63: 1.0
976
+ - !!python/object:python.hmmwriter.State
977
+ emissions:
978
+ probs:
979
+ A: 0.03587185532259167
980
+ C: 0.03587185532259167
981
+ G: 0.03587185532259167
982
+ T: 0.892384434032225
983
+ track: nukes
984
+ extras:
985
+ ambiguous_char: N
986
+ ambiguous_emission_prob: 0.25
987
+ germline: T
988
+ name: IGHV4-61_star_01_63
989
+ transitions:
990
+ IGHV4-61_star_01_64: 1.0
991
+ - !!python/object:python.hmmwriter.State
992
+ emissions:
993
+ probs:
994
+ A: 0.03587185532259167
995
+ C: 0.03587185532259167
996
+ G: 0.892384434032225
997
+ T: 0.03587185532259167
998
+ track: nukes
999
+ extras:
1000
+ ambiguous_char: N
1001
+ ambiguous_emission_prob: 0.25
1002
+ germline: G
1003
+ name: IGHV4-61_star_01_64
1004
+ transitions:
1005
+ IGHV4-61_star_01_65: 1.0
1006
+ - !!python/object:python.hmmwriter.State
1007
+ emissions:
1008
+ probs:
1009
+ A: 0.03587185532259167
1010
+ C: 0.892384434032225
1011
+ G: 0.03587185532259167
1012
+ T: 0.03587185532259167
1013
+ track: nukes
1014
+ extras:
1015
+ ambiguous_char: N
1016
+ ambiguous_emission_prob: 0.25
1017
+ germline: C
1018
+ name: IGHV4-61_star_01_65
1019
+ transitions:
1020
+ IGHV4-61_star_01_66: 1.0
1021
+ - !!python/object:python.hmmwriter.State
1022
+ emissions:
1023
+ probs:
1024
+ A: 0.8875
1025
+ C: 0.0375
1026
+ G: 0.0375
1027
+ T: 0.0375
1028
+ track: nukes
1029
+ extras:
1030
+ ambiguous_char: N
1031
+ ambiguous_emission_prob: 0.25
1032
+ germline: A
1033
+ name: IGHV4-61_star_01_66
1034
+ transitions:
1035
+ IGHV4-61_star_01_67: 1.0
1036
+ - !!python/object:python.hmmwriter.State
1037
+ emissions:
1038
+ probs:
1039
+ A: 0.03587185532259167
1040
+ C: 0.892384434032225
1041
+ G: 0.03587185532259167
1042
+ T: 0.03587185532259167
1043
+ track: nukes
1044
+ extras:
1045
+ ambiguous_char: N
1046
+ ambiguous_emission_prob: 0.25
1047
+ germline: C
1048
+ name: IGHV4-61_star_01_67
1049
+ transitions:
1050
+ IGHV4-61_star_01_68: 1.0
1051
+ - !!python/object:python.hmmwriter.State
1052
+ emissions:
1053
+ probs:
1054
+ A: 0.03587185532259167
1055
+ C: 0.03587185532259167
1056
+ G: 0.03587185532259167
1057
+ T: 0.892384434032225
1058
+ track: nukes
1059
+ extras:
1060
+ ambiguous_char: N
1061
+ ambiguous_emission_prob: 0.25
1062
+ germline: T
1063
+ name: IGHV4-61_star_01_68
1064
+ transitions:
1065
+ IGHV4-61_star_01_69: 1.0
1066
+ - !!python/object:python.hmmwriter.State
1067
+ emissions:
1068
+ probs:
1069
+ A: 0.03587185532259167
1070
+ C: 0.03587185532259167
1071
+ G: 0.892384434032225
1072
+ T: 0.03587185532259167
1073
+ track: nukes
1074
+ extras:
1075
+ ambiguous_char: N
1076
+ ambiguous_emission_prob: 0.25
1077
+ germline: G
1078
+ name: IGHV4-61_star_01_69
1079
+ transitions:
1080
+ IGHV4-61_star_01_70: 1.0
1081
+ - !!python/object:python.hmmwriter.State
1082
+ emissions:
1083
+ probs:
1084
+ A: 0.03587185532259167
1085
+ C: 0.03587185532259167
1086
+ G: 0.03587185532259167
1087
+ T: 0.892384434032225
1088
+ track: nukes
1089
+ extras:
1090
+ ambiguous_char: N
1091
+ ambiguous_emission_prob: 0.25
1092
+ germline: T
1093
+ name: IGHV4-61_star_01_70
1094
+ transitions:
1095
+ IGHV4-61_star_01_71: 1.0
1096
+ - !!python/object:python.hmmwriter.State
1097
+ emissions:
1098
+ probs:
1099
+ A: 0.03587185532259167
1100
+ C: 0.892384434032225
1101
+ G: 0.03587185532259167
1102
+ T: 0.03587185532259167
1103
+ track: nukes
1104
+ extras:
1105
+ ambiguous_char: N
1106
+ ambiguous_emission_prob: 0.25
1107
+ germline: C
1108
+ name: IGHV4-61_star_01_71
1109
+ transitions:
1110
+ IGHV4-61_star_01_72: 1.0
1111
+ - !!python/object:python.hmmwriter.State
1112
+ emissions:
1113
+ probs:
1114
+ A: 0.0375
1115
+ C: 0.0375
1116
+ G: 0.0375
1117
+ T: 0.8875
1118
+ track: nukes
1119
+ extras:
1120
+ ambiguous_char: N
1121
+ ambiguous_emission_prob: 0.25
1122
+ germline: T
1123
+ name: IGHV4-61_star_01_72
1124
+ transitions:
1125
+ IGHV4-61_star_01_73: 1.0
1126
+ - !!python/object:python.hmmwriter.State
1127
+ emissions:
1128
+ probs:
1129
+ A: 0.0375
1130
+ C: 0.8875
1131
+ G: 0.0375
1132
+ T: 0.0375
1133
+ track: nukes
1134
+ extras:
1135
+ ambiguous_char: N
1136
+ ambiguous_emission_prob: 0.25
1137
+ germline: C
1138
+ name: IGHV4-61_star_01_73
1139
+ transitions:
1140
+ IGHV4-61_star_01_74: 1.0
1141
+ - !!python/object:python.hmmwriter.State
1142
+ emissions:
1143
+ probs:
1144
+ A: 0.0375
1145
+ C: 0.0375
1146
+ G: 0.0375
1147
+ T: 0.8875
1148
+ track: nukes
1149
+ extras:
1150
+ ambiguous_char: N
1151
+ ambiguous_emission_prob: 0.25
1152
+ germline: T
1153
+ name: IGHV4-61_star_01_74
1154
+ transitions:
1155
+ IGHV4-61_star_01_75: 1.0
1156
+ - !!python/object:python.hmmwriter.State
1157
+ emissions:
1158
+ probs:
1159
+ A: 0.03587185532259167
1160
+ C: 0.03587185532259167
1161
+ G: 0.892384434032225
1162
+ T: 0.03587185532259167
1163
+ track: nukes
1164
+ extras:
1165
+ ambiguous_char: N
1166
+ ambiguous_emission_prob: 0.25
1167
+ germline: G
1168
+ name: IGHV4-61_star_01_75
1169
+ transitions:
1170
+ IGHV4-61_star_01_76: 1.0
1171
+ - !!python/object:python.hmmwriter.State
1172
+ emissions:
1173
+ probs:
1174
+ A: 0.0375
1175
+ C: 0.0375
1176
+ G: 0.8875
1177
+ T: 0.0375
1178
+ track: nukes
1179
+ extras:
1180
+ ambiguous_char: N
1181
+ ambiguous_emission_prob: 0.25
1182
+ germline: G
1183
+ name: IGHV4-61_star_01_76
1184
+ transitions:
1185
+ IGHV4-61_star_01_77: 1.0
1186
+ - !!python/object:python.hmmwriter.State
1187
+ emissions:
1188
+ probs:
1189
+ A: 0.03587185532259167
1190
+ C: 0.03587185532259167
1191
+ G: 0.03587185532259167
1192
+ T: 0.892384434032225
1193
+ track: nukes
1194
+ extras:
1195
+ ambiguous_char: N
1196
+ ambiguous_emission_prob: 0.25
1197
+ germline: T
1198
+ name: IGHV4-61_star_01_77
1199
+ transitions:
1200
+ IGHV4-61_star_01_78: 1.0
1201
+ - !!python/object:python.hmmwriter.State
1202
+ emissions:
1203
+ probs:
1204
+ A: 0.03587185532259167
1205
+ C: 0.03587185532259167
1206
+ G: 0.892384434032225
1207
+ T: 0.03587185532259167
1208
+ track: nukes
1209
+ extras:
1210
+ ambiguous_char: N
1211
+ ambiguous_emission_prob: 0.25
1212
+ germline: G
1213
+ name: IGHV4-61_star_01_78
1214
+ transitions:
1215
+ IGHV4-61_star_01_79: 1.0
1216
+ - !!python/object:python.hmmwriter.State
1217
+ emissions:
1218
+ probs:
1219
+ A: 0.03587185532259167
1220
+ C: 0.03587185532259167
1221
+ G: 0.892384434032225
1222
+ T: 0.03587185532259167
1223
+ track: nukes
1224
+ extras:
1225
+ ambiguous_char: N
1226
+ ambiguous_emission_prob: 0.25
1227
+ germline: G
1228
+ name: IGHV4-61_star_01_79
1229
+ transitions:
1230
+ IGHV4-61_star_01_80: 1.0
1231
+ - !!python/object:python.hmmwriter.State
1232
+ emissions:
1233
+ probs:
1234
+ A: 0.03587185532259167
1235
+ C: 0.892384434032225
1236
+ G: 0.03587185532259167
1237
+ T: 0.03587185532259167
1238
+ track: nukes
1239
+ extras:
1240
+ ambiguous_char: N
1241
+ ambiguous_emission_prob: 0.25
1242
+ germline: C
1243
+ name: IGHV4-61_star_01_80
1244
+ transitions:
1245
+ IGHV4-61_star_01_81: 1.0
1246
+ - !!python/object:python.hmmwriter.State
1247
+ emissions:
1248
+ probs:
1249
+ A: 0.03587185532259167
1250
+ C: 0.03587185532259167
1251
+ G: 0.03587185532259167
1252
+ T: 0.892384434032225
1253
+ track: nukes
1254
+ extras:
1255
+ ambiguous_char: N
1256
+ ambiguous_emission_prob: 0.25
1257
+ germline: T
1258
+ name: IGHV4-61_star_01_81
1259
+ transitions:
1260
+ IGHV4-61_star_01_82: 1.0
1261
+ - !!python/object:python.hmmwriter.State
1262
+ emissions:
1263
+ probs:
1264
+ A: 0.03587185532259167
1265
+ C: 0.892384434032225
1266
+ G: 0.03587185532259167
1267
+ T: 0.03587185532259167
1268
+ track: nukes
1269
+ extras:
1270
+ ambiguous_char: N
1271
+ ambiguous_emission_prob: 0.25
1272
+ germline: C
1273
+ name: IGHV4-61_star_01_82
1274
+ transitions:
1275
+ IGHV4-61_star_01_83: 1.0
1276
+ - !!python/object:python.hmmwriter.State
1277
+ emissions:
1278
+ probs:
1279
+ A: 0.03587185532259167
1280
+ C: 0.892384434032225
1281
+ G: 0.03587185532259167
1282
+ T: 0.03587185532259167
1283
+ track: nukes
1284
+ extras:
1285
+ ambiguous_char: N
1286
+ ambiguous_emission_prob: 0.25
1287
+ germline: C
1288
+ name: IGHV4-61_star_01_83
1289
+ transitions:
1290
+ IGHV4-61_star_01_84: 1.0
1291
+ - !!python/object:python.hmmwriter.State
1292
+ emissions:
1293
+ probs:
1294
+ A: 0.03587185532259167
1295
+ C: 0.03587185532259167
1296
+ G: 0.892384434032225
1297
+ T: 0.03587185532259167
1298
+ track: nukes
1299
+ extras:
1300
+ ambiguous_char: N
1301
+ ambiguous_emission_prob: 0.25
1302
+ germline: G
1303
+ name: IGHV4-61_star_01_84
1304
+ transitions:
1305
+ IGHV4-61_star_01_85: 1.0
1306
+ - !!python/object:python.hmmwriter.State
1307
+ emissions:
1308
+ probs:
1309
+ A: 0.03587185532259167
1310
+ C: 0.03587185532259167
1311
+ G: 0.03587185532259167
1312
+ T: 0.892384434032225
1313
+ track: nukes
1314
+ extras:
1315
+ ambiguous_char: N
1316
+ ambiguous_emission_prob: 0.25
1317
+ germline: T
1318
+ name: IGHV4-61_star_01_85
1319
+ transitions:
1320
+ IGHV4-61_star_01_86: 1.0
1321
+ - !!python/object:python.hmmwriter.State
1322
+ emissions:
1323
+ probs:
1324
+ A: 0.03587185532259167
1325
+ C: 0.892384434032225
1326
+ G: 0.03587185532259167
1327
+ T: 0.03587185532259167
1328
+ track: nukes
1329
+ extras:
1330
+ ambiguous_char: N
1331
+ ambiguous_emission_prob: 0.25
1332
+ germline: C
1333
+ name: IGHV4-61_star_01_86
1334
+ transitions:
1335
+ IGHV4-61_star_01_87: 1.0
1336
+ - !!python/object:python.hmmwriter.State
1337
+ emissions:
1338
+ probs:
1339
+ A: 0.892384434032225
1340
+ C: 0.03587185532259167
1341
+ G: 0.03587185532259167
1342
+ T: 0.03587185532259167
1343
+ track: nukes
1344
+ extras:
1345
+ ambiguous_char: N
1346
+ ambiguous_emission_prob: 0.25
1347
+ germline: A
1348
+ name: IGHV4-61_star_01_87
1349
+ transitions:
1350
+ IGHV4-61_star_01_88: 1.0
1351
+ - !!python/object:python.hmmwriter.State
1352
+ emissions:
1353
+ probs:
1354
+ A: 0.03587185532259167
1355
+ C: 0.03587185532259167
1356
+ G: 0.892384434032225
1357
+ T: 0.03587185532259167
1358
+ track: nukes
1359
+ extras:
1360
+ ambiguous_char: N
1361
+ ambiguous_emission_prob: 0.25
1362
+ germline: G
1363
+ name: IGHV4-61_star_01_88
1364
+ transitions:
1365
+ IGHV4-61_star_01_89: 1.0
1366
+ - !!python/object:python.hmmwriter.State
1367
+ emissions:
1368
+ probs:
1369
+ A: 0.03587185532259167
1370
+ C: 0.892384434032225
1371
+ G: 0.03587185532259167
1372
+ T: 0.03587185532259167
1373
+ track: nukes
1374
+ extras:
1375
+ ambiguous_char: N
1376
+ ambiguous_emission_prob: 0.25
1377
+ germline: C
1378
+ name: IGHV4-61_star_01_89
1379
+ transitions:
1380
+ IGHV4-61_star_01_90: 1.0
1381
+ - !!python/object:python.hmmwriter.State
1382
+ emissions:
1383
+ probs:
1384
+ A: 0.8875
1385
+ C: 0.0375
1386
+ G: 0.0375
1387
+ T: 0.0375
1388
+ track: nukes
1389
+ extras:
1390
+ ambiguous_char: N
1391
+ ambiguous_emission_prob: 0.25
1392
+ germline: A
1393
+ name: IGHV4-61_star_01_90
1394
+ transitions:
1395
+ IGHV4-61_star_01_91: 1.0
1396
+ - !!python/object:python.hmmwriter.State
1397
+ emissions:
1398
+ probs:
1399
+ A: 0.0375
1400
+ C: 0.0375
1401
+ G: 0.8875
1402
+ T: 0.0375
1403
+ track: nukes
1404
+ extras:
1405
+ ambiguous_char: N
1406
+ ambiguous_emission_prob: 0.25
1407
+ germline: G
1408
+ name: IGHV4-61_star_01_91
1409
+ transitions:
1410
+ IGHV4-61_star_01_92: 1.0
1411
+ - !!python/object:python.hmmwriter.State
1412
+ emissions:
1413
+ probs:
1414
+ A: 0.03587185532259167
1415
+ C: 0.03587185532259167
1416
+ G: 0.03587185532259167
1417
+ T: 0.892384434032225
1418
+ track: nukes
1419
+ extras:
1420
+ ambiguous_char: N
1421
+ ambiguous_emission_prob: 0.25
1422
+ germline: T
1423
+ name: IGHV4-61_star_01_92
1424
+ transitions:
1425
+ IGHV4-61_star_01_93: 1.0
1426
+ - !!python/object:python.hmmwriter.State
1427
+ emissions:
1428
+ probs:
1429
+ A: 0.03587185532259167
1430
+ C: 0.03587185532259167
1431
+ G: 0.892384434032225
1432
+ T: 0.03587185532259167
1433
+ track: nukes
1434
+ extras:
1435
+ ambiguous_char: N
1436
+ ambiguous_emission_prob: 0.25
1437
+ germline: G
1438
+ name: IGHV4-61_star_01_93
1439
+ transitions:
1440
+ IGHV4-61_star_01_94: 1.0
1441
+ - !!python/object:python.hmmwriter.State
1442
+ emissions:
1443
+ probs:
1444
+ A: 0.03587185532259167
1445
+ C: 0.03587185532259167
1446
+ G: 0.892384434032225
1447
+ T: 0.03587185532259167
1448
+ track: nukes
1449
+ extras:
1450
+ ambiguous_char: N
1451
+ ambiguous_emission_prob: 0.25
1452
+ germline: G
1453
+ name: IGHV4-61_star_01_94
1454
+ transitions:
1455
+ IGHV4-61_star_01_95: 1.0
1456
+ - !!python/object:python.hmmwriter.State
1457
+ emissions:
1458
+ probs:
1459
+ A: 0.03587185532259167
1460
+ C: 0.03587185532259167
1461
+ G: 0.03587185532259167
1462
+ T: 0.892384434032225
1463
+ track: nukes
1464
+ extras:
1465
+ ambiguous_char: N
1466
+ ambiguous_emission_prob: 0.25
1467
+ germline: T
1468
+ name: IGHV4-61_star_01_95
1469
+ transitions:
1470
+ IGHV4-61_star_01_96: 1.0
1471
+ - !!python/object:python.hmmwriter.State
1472
+ emissions:
1473
+ probs:
1474
+ A: 0.8875
1475
+ C: 0.0375
1476
+ G: 0.0375
1477
+ T: 0.0375
1478
+ track: nukes
1479
+ extras:
1480
+ ambiguous_char: N
1481
+ ambiguous_emission_prob: 0.25
1482
+ germline: A
1483
+ name: IGHV4-61_star_01_96
1484
+ transitions:
1485
+ IGHV4-61_star_01_97: 1.0
1486
+ - !!python/object:python.hmmwriter.State
1487
+ emissions:
1488
+ probs:
1489
+ A: 0.03587185532259167
1490
+ C: 0.03587185532259167
1491
+ G: 0.892384434032225
1492
+ T: 0.03587185532259167
1493
+ track: nukes
1494
+ extras:
1495
+ ambiguous_char: N
1496
+ ambiguous_emission_prob: 0.25
1497
+ germline: G
1498
+ name: IGHV4-61_star_01_97
1499
+ transitions:
1500
+ IGHV4-61_star_01_98: 1.0
1501
+ - !!python/object:python.hmmwriter.State
1502
+ emissions:
1503
+ probs:
1504
+ A: 0.03587185532259167
1505
+ C: 0.03587185532259167
1506
+ G: 0.03587185532259167
1507
+ T: 0.892384434032225
1508
+ track: nukes
1509
+ extras:
1510
+ ambiguous_char: N
1511
+ ambiguous_emission_prob: 0.25
1512
+ germline: T
1513
+ name: IGHV4-61_star_01_98
1514
+ transitions:
1515
+ IGHV4-61_star_01_99: 1.0
1516
+ - !!python/object:python.hmmwriter.State
1517
+ emissions:
1518
+ probs:
1519
+ A: 0.03587185532259167
1520
+ C: 0.03587185532259167
1521
+ G: 0.03587185532259167
1522
+ T: 0.892384434032225
1523
+ track: nukes
1524
+ extras:
1525
+ ambiguous_char: N
1526
+ ambiguous_emission_prob: 0.25
1527
+ germline: T
1528
+ name: IGHV4-61_star_01_99
1529
+ transitions:
1530
+ IGHV4-61_star_01_100: 1.0
1531
+ - !!python/object:python.hmmwriter.State
1532
+ emissions:
1533
+ probs:
1534
+ A: 0.892384434032225
1535
+ C: 0.03587185532259167
1536
+ G: 0.03587185532259167
1537
+ T: 0.03587185532259167
1538
+ track: nukes
1539
+ extras:
1540
+ ambiguous_char: N
1541
+ ambiguous_emission_prob: 0.25
1542
+ germline: A
1543
+ name: IGHV4-61_star_01_100
1544
+ transitions:
1545
+ IGHV4-61_star_01_101: 1.0
1546
+ - !!python/object:python.hmmwriter.State
1547
+ emissions:
1548
+ probs:
1549
+ A: 0.03587185532259167
1550
+ C: 0.892384434032225
1551
+ G: 0.03587185532259167
1552
+ T: 0.03587185532259167
1553
+ track: nukes
1554
+ extras:
1555
+ ambiguous_char: N
1556
+ ambiguous_emission_prob: 0.25
1557
+ germline: C
1558
+ name: IGHV4-61_star_01_101
1559
+ transitions:
1560
+ IGHV4-61_star_01_102: 1.0
1561
+ - !!python/object:python.hmmwriter.State
1562
+ emissions:
1563
+ probs:
1564
+ A: 0.03587185532259167
1565
+ C: 0.03587185532259167
1566
+ G: 0.03587185532259167
1567
+ T: 0.892384434032225
1568
+ track: nukes
1569
+ extras:
1570
+ ambiguous_char: N
1571
+ ambiguous_emission_prob: 0.25
1572
+ germline: T
1573
+ name: IGHV4-61_star_01_102
1574
+ transitions:
1575
+ IGHV4-61_star_01_103: 1.0
1576
+ - !!python/object:python.hmmwriter.State
1577
+ emissions:
1578
+ probs:
1579
+ A: 0.892384434032225
1580
+ C: 0.03587185532259167
1581
+ G: 0.03587185532259167
1582
+ T: 0.03587185532259167
1583
+ track: nukes
1584
+ extras:
1585
+ ambiguous_char: N
1586
+ ambiguous_emission_prob: 0.25
1587
+ germline: A
1588
+ name: IGHV4-61_star_01_103
1589
+ transitions:
1590
+ IGHV4-61_star_01_104: 1.0
1591
+ - !!python/object:python.hmmwriter.State
1592
+ emissions:
1593
+ probs:
1594
+ A: 0.0375
1595
+ C: 0.8875
1596
+ G: 0.0375
1597
+ T: 0.0375
1598
+ track: nukes
1599
+ extras:
1600
+ ambiguous_char: N
1601
+ ambiguous_emission_prob: 0.25
1602
+ germline: C
1603
+ name: IGHV4-61_star_01_104
1604
+ transitions:
1605
+ IGHV4-61_star_01_105: 1.0
1606
+ - !!python/object:python.hmmwriter.State
1607
+ emissions:
1608
+ probs:
1609
+ A: 0.03587185532259167
1610
+ C: 0.03587185532259167
1611
+ G: 0.03587185532259167
1612
+ T: 0.892384434032225
1613
+ track: nukes
1614
+ extras:
1615
+ ambiguous_char: N
1616
+ ambiguous_emission_prob: 0.25
1617
+ germline: T
1618
+ name: IGHV4-61_star_01_105
1619
+ transitions:
1620
+ IGHV4-61_star_01_106: 1.0
1621
+ - !!python/object:python.hmmwriter.State
1622
+ emissions:
1623
+ probs:
1624
+ A: 0.03587185532259167
1625
+ C: 0.03587185532259167
1626
+ G: 0.892384434032225
1627
+ T: 0.03587185532259167
1628
+ track: nukes
1629
+ extras:
1630
+ ambiguous_char: N
1631
+ ambiguous_emission_prob: 0.25
1632
+ germline: G
1633
+ name: IGHV4-61_star_01_106
1634
+ transitions:
1635
+ IGHV4-61_star_01_107: 1.0
1636
+ - !!python/object:python.hmmwriter.State
1637
+ emissions:
1638
+ probs:
1639
+ A: 0.0375
1640
+ C: 0.0375
1641
+ G: 0.8875
1642
+ T: 0.0375
1643
+ track: nukes
1644
+ extras:
1645
+ ambiguous_char: N
1646
+ ambiguous_emission_prob: 0.25
1647
+ germline: G
1648
+ name: IGHV4-61_star_01_107
1649
+ transitions:
1650
+ IGHV4-61_star_01_108: 1.0
1651
+ - !!python/object:python.hmmwriter.State
1652
+ emissions:
1653
+ probs:
1654
+ A: 0.892384434032225
1655
+ C: 0.03587185532259167
1656
+ G: 0.03587185532259167
1657
+ T: 0.03587185532259167
1658
+ track: nukes
1659
+ extras:
1660
+ ambiguous_char: N
1661
+ ambiguous_emission_prob: 0.25
1662
+ germline: A
1663
+ name: IGHV4-61_star_01_108
1664
+ transitions:
1665
+ IGHV4-61_star_01_109: 1.0
1666
+ - !!python/object:python.hmmwriter.State
1667
+ emissions:
1668
+ probs:
1669
+ A: 0.03587185532259167
1670
+ C: 0.03587185532259167
1671
+ G: 0.892384434032225
1672
+ T: 0.03587185532259167
1673
+ track: nukes
1674
+ extras:
1675
+ ambiguous_char: N
1676
+ ambiguous_emission_prob: 0.25
1677
+ germline: G
1678
+ name: IGHV4-61_star_01_109
1679
+ transitions:
1680
+ IGHV4-61_star_01_110: 1.0
1681
+ - !!python/object:python.hmmwriter.State
1682
+ emissions:
1683
+ probs:
1684
+ A: 0.03587185532259167
1685
+ C: 0.892384434032225
1686
+ G: 0.03587185532259167
1687
+ T: 0.03587185532259167
1688
+ track: nukes
1689
+ extras:
1690
+ ambiguous_char: N
1691
+ ambiguous_emission_prob: 0.25
1692
+ germline: C
1693
+ name: IGHV4-61_star_01_110
1694
+ transitions:
1695
+ IGHV4-61_star_01_111: 1.0
1696
+ - !!python/object:python.hmmwriter.State
1697
+ emissions:
1698
+ probs:
1699
+ A: 0.0375
1700
+ C: 0.0375
1701
+ G: 0.0375
1702
+ T: 0.8875
1703
+ track: nukes
1704
+ extras:
1705
+ ambiguous_char: N
1706
+ ambiguous_emission_prob: 0.25
1707
+ germline: T
1708
+ name: IGHV4-61_star_01_111
1709
+ transitions:
1710
+ IGHV4-61_star_01_112: 1.0
1711
+ - !!python/object:python.hmmwriter.State
1712
+ emissions:
1713
+ probs:
1714
+ A: 0.0375
1715
+ C: 0.0375
1716
+ G: 0.8875
1717
+ T: 0.0375
1718
+ track: nukes
1719
+ extras:
1720
+ ambiguous_char: N
1721
+ ambiguous_emission_prob: 0.25
1722
+ germline: G
1723
+ name: IGHV4-61_star_01_112
1724
+ transitions:
1725
+ IGHV4-61_star_01_113: 1.0
1726
+ - !!python/object:python.hmmwriter.State
1727
+ emissions:
1728
+ probs:
1729
+ A: 0.03587185532259167
1730
+ C: 0.03587185532259167
1731
+ G: 0.892384434032225
1732
+ T: 0.03587185532259167
1733
+ track: nukes
1734
+ extras:
1735
+ ambiguous_char: N
1736
+ ambiguous_emission_prob: 0.25
1737
+ germline: G
1738
+ name: IGHV4-61_star_01_113
1739
+ transitions:
1740
+ IGHV4-61_star_01_114: 1.0
1741
+ - !!python/object:python.hmmwriter.State
1742
+ emissions:
1743
+ probs:
1744
+ A: 0.8875
1745
+ C: 0.0375
1746
+ G: 0.0375
1747
+ T: 0.0375
1748
+ track: nukes
1749
+ extras:
1750
+ ambiguous_char: N
1751
+ ambiguous_emission_prob: 0.25
1752
+ germline: A
1753
+ name: IGHV4-61_star_01_114
1754
+ transitions:
1755
+ IGHV4-61_star_01_115: 1.0
1756
+ - !!python/object:python.hmmwriter.State
1757
+ emissions:
1758
+ probs:
1759
+ A: 0.0375
1760
+ C: 0.0375
1761
+ G: 0.0375
1762
+ T: 0.8875
1763
+ track: nukes
1764
+ extras:
1765
+ ambiguous_char: N
1766
+ ambiguous_emission_prob: 0.25
1767
+ germline: T
1768
+ name: IGHV4-61_star_01_115
1769
+ transitions:
1770
+ IGHV4-61_star_01_116: 1.0
1771
+ - !!python/object:python.hmmwriter.State
1772
+ emissions:
1773
+ probs:
1774
+ A: 0.03587185532259167
1775
+ C: 0.892384434032225
1776
+ G: 0.03587185532259167
1777
+ T: 0.03587185532259167
1778
+ track: nukes
1779
+ extras:
1780
+ ambiguous_char: N
1781
+ ambiguous_emission_prob: 0.25
1782
+ germline: C
1783
+ name: IGHV4-61_star_01_116
1784
+ transitions:
1785
+ IGHV4-61_star_01_117: 1.0
1786
+ - !!python/object:python.hmmwriter.State
1787
+ emissions:
1788
+ probs:
1789
+ A: 0.03587185532259167
1790
+ C: 0.892384434032225
1791
+ G: 0.03587185532259167
1792
+ T: 0.03587185532259167
1793
+ track: nukes
1794
+ extras:
1795
+ ambiguous_char: N
1796
+ ambiguous_emission_prob: 0.25
1797
+ germline: C
1798
+ name: IGHV4-61_star_01_117
1799
+ transitions:
1800
+ IGHV4-61_star_01_118: 1.0
1801
+ - !!python/object:python.hmmwriter.State
1802
+ emissions:
1803
+ probs:
1804
+ A: 0.03587185532259167
1805
+ C: 0.03587185532259167
1806
+ G: 0.892384434032225
1807
+ T: 0.03587185532259167
1808
+ track: nukes
1809
+ extras:
1810
+ ambiguous_char: N
1811
+ ambiguous_emission_prob: 0.25
1812
+ germline: G
1813
+ name: IGHV4-61_star_01_118
1814
+ transitions:
1815
+ IGHV4-61_star_01_119: 1.0
1816
+ - !!python/object:python.hmmwriter.State
1817
+ emissions:
1818
+ probs:
1819
+ A: 0.0375
1820
+ C: 0.0375
1821
+ G: 0.8875
1822
+ T: 0.0375
1823
+ track: nukes
1824
+ extras:
1825
+ ambiguous_char: N
1826
+ ambiguous_emission_prob: 0.25
1827
+ germline: G
1828
+ name: IGHV4-61_star_01_119
1829
+ transitions:
1830
+ IGHV4-61_star_01_120: 1.0
1831
+ - !!python/object:python.hmmwriter.State
1832
+ emissions:
1833
+ probs:
1834
+ A: 0.03587185532259167
1835
+ C: 0.892384434032225
1836
+ G: 0.03587185532259167
1837
+ T: 0.03587185532259167
1838
+ track: nukes
1839
+ extras:
1840
+ ambiguous_char: N
1841
+ ambiguous_emission_prob: 0.25
1842
+ germline: C
1843
+ name: IGHV4-61_star_01_120
1844
+ transitions:
1845
+ IGHV4-61_star_01_121: 1.0
1846
+ - !!python/object:python.hmmwriter.State
1847
+ emissions:
1848
+ probs:
1849
+ A: 0.892384434032225
1850
+ C: 0.03587185532259167
1851
+ G: 0.03587185532259167
1852
+ T: 0.03587185532259167
1853
+ track: nukes
1854
+ extras:
1855
+ ambiguous_char: N
1856
+ ambiguous_emission_prob: 0.25
1857
+ germline: A
1858
+ name: IGHV4-61_star_01_121
1859
+ transitions:
1860
+ IGHV4-61_star_01_122: 1.0
1861
+ - !!python/object:python.hmmwriter.State
1862
+ emissions:
1863
+ probs:
1864
+ A: 0.03587185532259167
1865
+ C: 0.03587185532259167
1866
+ G: 0.892384434032225
1867
+ T: 0.03587185532259167
1868
+ track: nukes
1869
+ extras:
1870
+ ambiguous_char: N
1871
+ ambiguous_emission_prob: 0.25
1872
+ germline: G
1873
+ name: IGHV4-61_star_01_122
1874
+ transitions:
1875
+ IGHV4-61_star_01_123: 1.0
1876
+ - !!python/object:python.hmmwriter.State
1877
+ emissions:
1878
+ probs:
1879
+ A: 0.03587185532259167
1880
+ C: 0.892384434032225
1881
+ G: 0.03587185532259167
1882
+ T: 0.03587185532259167
1883
+ track: nukes
1884
+ extras:
1885
+ ambiguous_char: N
1886
+ ambiguous_emission_prob: 0.25
1887
+ germline: C
1888
+ name: IGHV4-61_star_01_123
1889
+ transitions:
1890
+ IGHV4-61_star_01_124: 1.0
1891
+ - !!python/object:python.hmmwriter.State
1892
+ emissions:
1893
+ probs:
1894
+ A: 0.03587185532259167
1895
+ C: 0.892384434032225
1896
+ G: 0.03587185532259167
1897
+ T: 0.03587185532259167
1898
+ track: nukes
1899
+ extras:
1900
+ ambiguous_char: N
1901
+ ambiguous_emission_prob: 0.25
1902
+ germline: C
1903
+ name: IGHV4-61_star_01_124
1904
+ transitions:
1905
+ IGHV4-61_star_01_125: 1.0
1906
+ - !!python/object:python.hmmwriter.State
1907
+ emissions:
1908
+ probs:
1909
+ A: 0.0375
1910
+ C: 0.8875
1911
+ G: 0.0375
1912
+ T: 0.0375
1913
+ track: nukes
1914
+ extras:
1915
+ ambiguous_char: N
1916
+ ambiguous_emission_prob: 0.25
1917
+ germline: C
1918
+ name: IGHV4-61_star_01_125
1919
+ transitions:
1920
+ IGHV4-61_star_01_126: 1.0
1921
+ - !!python/object:python.hmmwriter.State
1922
+ emissions:
1923
+ probs:
1924
+ A: 0.0375
1925
+ C: 0.8875
1926
+ G: 0.0375
1927
+ T: 0.0375
1928
+ track: nukes
1929
+ extras:
1930
+ ambiguous_char: N
1931
+ ambiguous_emission_prob: 0.25
1932
+ germline: C
1933
+ name: IGHV4-61_star_01_126
1934
+ transitions:
1935
+ IGHV4-61_star_01_127: 1.0
1936
+ - !!python/object:python.hmmwriter.State
1937
+ emissions:
1938
+ probs:
1939
+ A: 0.03587185532259167
1940
+ C: 0.892384434032225
1941
+ G: 0.03587185532259167
1942
+ T: 0.03587185532259167
1943
+ track: nukes
1944
+ extras:
1945
+ ambiguous_char: N
1946
+ ambiguous_emission_prob: 0.25
1947
+ germline: C
1948
+ name: IGHV4-61_star_01_127
1949
+ transitions:
1950
+ IGHV4-61_star_01_128: 1.0
1951
+ - !!python/object:python.hmmwriter.State
1952
+ emissions:
1953
+ probs:
1954
+ A: 0.892384434032225
1955
+ C: 0.03587185532259167
1956
+ G: 0.03587185532259167
1957
+ T: 0.03587185532259167
1958
+ track: nukes
1959
+ extras:
1960
+ ambiguous_char: N
1961
+ ambiguous_emission_prob: 0.25
1962
+ germline: A
1963
+ name: IGHV4-61_star_01_128
1964
+ transitions:
1965
+ IGHV4-61_star_01_129: 1.0
1966
+ - !!python/object:python.hmmwriter.State
1967
+ emissions:
1968
+ probs:
1969
+ A: 0.03587185532259167
1970
+ C: 0.03587185532259167
1971
+ G: 0.892384434032225
1972
+ T: 0.03587185532259167
1973
+ track: nukes
1974
+ extras:
1975
+ ambiguous_char: N
1976
+ ambiguous_emission_prob: 0.25
1977
+ germline: G
1978
+ name: IGHV4-61_star_01_129
1979
+ transitions:
1980
+ IGHV4-61_star_01_130: 1.0
1981
+ - !!python/object:python.hmmwriter.State
1982
+ emissions:
1983
+ probs:
1984
+ A: 0.03587185532259167
1985
+ C: 0.03587185532259167
1986
+ G: 0.892384434032225
1987
+ T: 0.03587185532259167
1988
+ track: nukes
1989
+ extras:
1990
+ ambiguous_char: N
1991
+ ambiguous_emission_prob: 0.25
1992
+ germline: G
1993
+ name: IGHV4-61_star_01_130
1994
+ transitions:
1995
+ IGHV4-61_star_01_131: 1.0
1996
+ - !!python/object:python.hmmwriter.State
1997
+ emissions:
1998
+ probs:
1999
+ A: 0.03587185532259167
2000
+ C: 0.03587185532259167
2001
+ G: 0.892384434032225
2002
+ T: 0.03587185532259167
2003
+ track: nukes
2004
+ extras:
2005
+ ambiguous_char: N
2006
+ ambiguous_emission_prob: 0.25
2007
+ germline: G
2008
+ name: IGHV4-61_star_01_131
2009
+ transitions:
2010
+ IGHV4-61_star_01_132: 1.0
2011
+ - !!python/object:python.hmmwriter.State
2012
+ emissions:
2013
+ probs:
2014
+ A: 0.892384434032225
2015
+ C: 0.03587185532259167
2016
+ G: 0.03587185532259167
2017
+ T: 0.03587185532259167
2018
+ track: nukes
2019
+ extras:
2020
+ ambiguous_char: N
2021
+ ambiguous_emission_prob: 0.25
2022
+ germline: A
2023
+ name: IGHV4-61_star_01_132
2024
+ transitions:
2025
+ IGHV4-61_star_01_133: 1.0
2026
+ - !!python/object:python.hmmwriter.State
2027
+ emissions:
2028
+ probs:
2029
+ A: 0.8875
2030
+ C: 0.0375
2031
+ G: 0.0375
2032
+ T: 0.0375
2033
+ track: nukes
2034
+ extras:
2035
+ ambiguous_char: N
2036
+ ambiguous_emission_prob: 0.25
2037
+ germline: A
2038
+ name: IGHV4-61_star_01_133
2039
+ transitions:
2040
+ IGHV4-61_star_01_134: 1.0
2041
+ - !!python/object:python.hmmwriter.State
2042
+ emissions:
2043
+ probs:
2044
+ A: 0.03587185532259167
2045
+ C: 0.03587185532259167
2046
+ G: 0.892384434032225
2047
+ T: 0.03587185532259167
2048
+ track: nukes
2049
+ extras:
2050
+ ambiguous_char: N
2051
+ ambiguous_emission_prob: 0.25
2052
+ germline: G
2053
+ name: IGHV4-61_star_01_134
2054
+ transitions:
2055
+ IGHV4-61_star_01_135: 1.0
2056
+ - !!python/object:python.hmmwriter.State
2057
+ emissions:
2058
+ probs:
2059
+ A: 0.03587185532259167
2060
+ C: 0.03587185532259167
2061
+ G: 0.892384434032225
2062
+ T: 0.03587185532259167
2063
+ track: nukes
2064
+ extras:
2065
+ ambiguous_char: N
2066
+ ambiguous_emission_prob: 0.25
2067
+ germline: G
2068
+ name: IGHV4-61_star_01_135
2069
+ transitions:
2070
+ IGHV4-61_star_01_136: 1.0
2071
+ - !!python/object:python.hmmwriter.State
2072
+ emissions:
2073
+ probs:
2074
+ A: 0.03587185532259167
2075
+ C: 0.03587185532259167
2076
+ G: 0.892384434032225
2077
+ T: 0.03587185532259167
2078
+ track: nukes
2079
+ extras:
2080
+ ambiguous_char: N
2081
+ ambiguous_emission_prob: 0.25
2082
+ germline: G
2083
+ name: IGHV4-61_star_01_136
2084
+ transitions:
2085
+ IGHV4-61_star_01_137: 1.0
2086
+ - !!python/object:python.hmmwriter.State
2087
+ emissions:
2088
+ probs:
2089
+ A: 0.892384434032225
2090
+ C: 0.03587185532259167
2091
+ G: 0.03587185532259167
2092
+ T: 0.03587185532259167
2093
+ track: nukes
2094
+ extras:
2095
+ ambiguous_char: N
2096
+ ambiguous_emission_prob: 0.25
2097
+ germline: A
2098
+ name: IGHV4-61_star_01_137
2099
+ transitions:
2100
+ IGHV4-61_star_01_138: 1.0
2101
+ - !!python/object:python.hmmwriter.State
2102
+ emissions:
2103
+ probs:
2104
+ A: 0.0375
2105
+ C: 0.8875
2106
+ G: 0.0375
2107
+ T: 0.0375
2108
+ track: nukes
2109
+ extras:
2110
+ ambiguous_char: N
2111
+ ambiguous_emission_prob: 0.25
2112
+ germline: C
2113
+ name: IGHV4-61_star_01_138
2114
+ transitions:
2115
+ IGHV4-61_star_01_139: 1.0
2116
+ - !!python/object:python.hmmwriter.State
2117
+ emissions:
2118
+ probs:
2119
+ A: 0.03587185532259167
2120
+ C: 0.03587185532259167
2121
+ G: 0.03587185532259167
2122
+ T: 0.892384434032225
2123
+ track: nukes
2124
+ extras:
2125
+ ambiguous_char: N
2126
+ ambiguous_emission_prob: 0.25
2127
+ germline: T
2128
+ name: IGHV4-61_star_01_139
2129
+ transitions:
2130
+ IGHV4-61_star_01_140: 1.0
2131
+ - !!python/object:python.hmmwriter.State
2132
+ emissions:
2133
+ probs:
2134
+ A: 0.0375
2135
+ C: 0.0375
2136
+ G: 0.8875
2137
+ T: 0.0375
2138
+ track: nukes
2139
+ extras:
2140
+ ambiguous_char: N
2141
+ ambiguous_emission_prob: 0.25
2142
+ germline: G
2143
+ name: IGHV4-61_star_01_140
2144
+ transitions:
2145
+ IGHV4-61_star_01_141: 1.0
2146
+ - !!python/object:python.hmmwriter.State
2147
+ emissions:
2148
+ probs:
2149
+ A: 0.03587185532259167
2150
+ C: 0.03587185532259167
2151
+ G: 0.892384434032225
2152
+ T: 0.03587185532259167
2153
+ track: nukes
2154
+ extras:
2155
+ ambiguous_char: N
2156
+ ambiguous_emission_prob: 0.25
2157
+ germline: G
2158
+ name: IGHV4-61_star_01_141
2159
+ transitions:
2160
+ IGHV4-61_star_01_142: 1.0
2161
+ - !!python/object:python.hmmwriter.State
2162
+ emissions:
2163
+ probs:
2164
+ A: 0.892384434032225
2165
+ C: 0.03587185532259167
2166
+ G: 0.03587185532259167
2167
+ T: 0.03587185532259167
2168
+ track: nukes
2169
+ extras:
2170
+ ambiguous_char: N
2171
+ ambiguous_emission_prob: 0.25
2172
+ germline: A
2173
+ name: IGHV4-61_star_01_142
2174
+ transitions:
2175
+ IGHV4-61_star_01_143: 1.0
2176
+ - !!python/object:python.hmmwriter.State
2177
+ emissions:
2178
+ probs:
2179
+ A: 0.0375
2180
+ C: 0.0375
2181
+ G: 0.8875
2182
+ T: 0.0375
2183
+ track: nukes
2184
+ extras:
2185
+ ambiguous_char: N
2186
+ ambiguous_emission_prob: 0.25
2187
+ germline: G
2188
+ name: IGHV4-61_star_01_143
2189
+ transitions:
2190
+ IGHV4-61_star_01_144: 1.0
2191
+ - !!python/object:python.hmmwriter.State
2192
+ emissions:
2193
+ probs:
2194
+ A: 0.03587185532259167
2195
+ C: 0.03587185532259167
2196
+ G: 0.03587185532259167
2197
+ T: 0.892384434032225
2198
+ track: nukes
2199
+ extras:
2200
+ ambiguous_char: N
2201
+ ambiguous_emission_prob: 0.25
2202
+ germline: T
2203
+ name: IGHV4-61_star_01_144
2204
+ transitions:
2205
+ IGHV4-61_star_01_145: 1.0
2206
+ - !!python/object:python.hmmwriter.State
2207
+ emissions:
2208
+ probs:
2209
+ A: 0.03587185532259167
2210
+ C: 0.03587185532259167
2211
+ G: 0.892384434032225
2212
+ T: 0.03587185532259167
2213
+ track: nukes
2214
+ extras:
2215
+ ambiguous_char: N
2216
+ ambiguous_emission_prob: 0.25
2217
+ germline: G
2218
+ name: IGHV4-61_star_01_145
2219
+ transitions:
2220
+ IGHV4-61_star_01_146: 1.0
2221
+ - !!python/object:python.hmmwriter.State
2222
+ emissions:
2223
+ probs:
2224
+ A: 0.03587185532259167
2225
+ C: 0.03587185532259167
2226
+ G: 0.892384434032225
2227
+ T: 0.03587185532259167
2228
+ track: nukes
2229
+ extras:
2230
+ ambiguous_char: N
2231
+ ambiguous_emission_prob: 0.25
2232
+ germline: G
2233
+ name: IGHV4-61_star_01_146
2234
+ transitions:
2235
+ IGHV4-61_star_01_147: 1.0
2236
+ - !!python/object:python.hmmwriter.State
2237
+ emissions:
2238
+ probs:
2239
+ A: 0.892384434032225
2240
+ C: 0.03587185532259167
2241
+ G: 0.03587185532259167
2242
+ T: 0.03587185532259167
2243
+ track: nukes
2244
+ extras:
2245
+ ambiguous_char: N
2246
+ ambiguous_emission_prob: 0.25
2247
+ germline: A
2248
+ name: IGHV4-61_star_01_147
2249
+ transitions:
2250
+ IGHV4-61_star_01_148: 1.0
2251
+ - !!python/object:python.hmmwriter.State
2252
+ emissions:
2253
+ probs:
2254
+ A: 0.03587185532259167
2255
+ C: 0.03587185532259167
2256
+ G: 0.03587185532259167
2257
+ T: 0.892384434032225
2258
+ track: nukes
2259
+ extras:
2260
+ ambiguous_char: N
2261
+ ambiguous_emission_prob: 0.25
2262
+ germline: T
2263
+ name: IGHV4-61_star_01_148
2264
+ transitions:
2265
+ IGHV4-61_star_01_149: 1.0
2266
+ - !!python/object:python.hmmwriter.State
2267
+ emissions:
2268
+ probs:
2269
+ A: 0.03587185532259167
2270
+ C: 0.03587185532259167
2271
+ G: 0.03587185532259167
2272
+ T: 0.892384434032225
2273
+ track: nukes
2274
+ extras:
2275
+ ambiguous_char: N
2276
+ ambiguous_emission_prob: 0.25
2277
+ germline: T
2278
+ name: IGHV4-61_star_01_149
2279
+ transitions:
2280
+ IGHV4-61_star_01_150: 1.0
2281
+ - !!python/object:python.hmmwriter.State
2282
+ emissions:
2283
+ probs:
2284
+ A: 0.03587185532259167
2285
+ C: 0.03587185532259167
2286
+ G: 0.892384434032225
2287
+ T: 0.03587185532259167
2288
+ track: nukes
2289
+ extras:
2290
+ ambiguous_char: N
2291
+ ambiguous_emission_prob: 0.25
2292
+ germline: G
2293
+ name: IGHV4-61_star_01_150
2294
+ transitions:
2295
+ IGHV4-61_star_01_151: 1.0
2296
+ - !!python/object:python.hmmwriter.State
2297
+ emissions:
2298
+ probs:
2299
+ A: 0.03587185532259167
2300
+ C: 0.03587185532259167
2301
+ G: 0.892384434032225
2302
+ T: 0.03587185532259167
2303
+ track: nukes
2304
+ extras:
2305
+ ambiguous_char: N
2306
+ ambiguous_emission_prob: 0.25
2307
+ germline: G
2308
+ name: IGHV4-61_star_01_151
2309
+ transitions:
2310
+ IGHV4-61_star_01_152: 1.0
2311
+ - !!python/object:python.hmmwriter.State
2312
+ emissions:
2313
+ probs:
2314
+ A: 0.03587185532259167
2315
+ C: 0.03587185532259167
2316
+ G: 0.892384434032225
2317
+ T: 0.03587185532259167
2318
+ track: nukes
2319
+ extras:
2320
+ ambiguous_char: N
2321
+ ambiguous_emission_prob: 0.25
2322
+ germline: G
2323
+ name: IGHV4-61_star_01_152
2324
+ transitions:
2325
+ IGHV4-61_star_01_153: 1.0
2326
+ - !!python/object:python.hmmwriter.State
2327
+ emissions:
2328
+ probs:
2329
+ A: 0.03587185532259167
2330
+ C: 0.03587185532259167
2331
+ G: 0.03587185532259167
2332
+ T: 0.892384434032225
2333
+ track: nukes
2334
+ extras:
2335
+ ambiguous_char: N
2336
+ ambiguous_emission_prob: 0.25
2337
+ germline: T
2338
+ name: IGHV4-61_star_01_153
2339
+ transitions:
2340
+ IGHV4-61_star_01_154: 1.0
2341
+ - !!python/object:python.hmmwriter.State
2342
+ emissions:
2343
+ probs:
2344
+ A: 0.8875
2345
+ C: 0.0375
2346
+ G: 0.0375
2347
+ T: 0.0375
2348
+ track: nukes
2349
+ extras:
2350
+ ambiguous_char: N
2351
+ ambiguous_emission_prob: 0.25
2352
+ germline: A
2353
+ name: IGHV4-61_star_01_154
2354
+ transitions:
2355
+ IGHV4-61_star_01_155: 1.0
2356
+ - !!python/object:python.hmmwriter.State
2357
+ emissions:
2358
+ probs:
2359
+ A: 0.03587185532259167
2360
+ C: 0.03587185532259167
2361
+ G: 0.03587185532259167
2362
+ T: 0.892384434032225
2363
+ track: nukes
2364
+ extras:
2365
+ ambiguous_char: N
2366
+ ambiguous_emission_prob: 0.25
2367
+ germline: T
2368
+ name: IGHV4-61_star_01_155
2369
+ transitions:
2370
+ IGHV4-61_star_01_156: 1.0
2371
+ - !!python/object:python.hmmwriter.State
2372
+ emissions:
2373
+ probs:
2374
+ A: 0.892384434032225
2375
+ C: 0.03587185532259167
2376
+ G: 0.03587185532259167
2377
+ T: 0.03587185532259167
2378
+ track: nukes
2379
+ extras:
2380
+ ambiguous_char: N
2381
+ ambiguous_emission_prob: 0.25
2382
+ germline: A
2383
+ name: IGHV4-61_star_01_156
2384
+ transitions:
2385
+ IGHV4-61_star_01_157: 1.0
2386
+ - !!python/object:python.hmmwriter.State
2387
+ emissions:
2388
+ probs:
2389
+ A: 0.03587185532259167
2390
+ C: 0.03587185532259167
2391
+ G: 0.03587185532259167
2392
+ T: 0.892384434032225
2393
+ track: nukes
2394
+ extras:
2395
+ ambiguous_char: N
2396
+ ambiguous_emission_prob: 0.25
2397
+ germline: T
2398
+ name: IGHV4-61_star_01_157
2399
+ transitions:
2400
+ IGHV4-61_star_01_158: 1.0
2401
+ - !!python/object:python.hmmwriter.State
2402
+ emissions:
2403
+ probs:
2404
+ A: 0.03587185532259167
2405
+ C: 0.892384434032225
2406
+ G: 0.03587185532259167
2407
+ T: 0.03587185532259167
2408
+ track: nukes
2409
+ extras:
2410
+ ambiguous_char: N
2411
+ ambiguous_emission_prob: 0.25
2412
+ germline: C
2413
+ name: IGHV4-61_star_01_158
2414
+ transitions:
2415
+ IGHV4-61_star_01_159: 1.0
2416
+ - !!python/object:python.hmmwriter.State
2417
+ emissions:
2418
+ probs:
2419
+ A: 0.03587185532259167
2420
+ C: 0.03587185532259167
2421
+ G: 0.03587185532259167
2422
+ T: 0.892384434032225
2423
+ track: nukes
2424
+ extras:
2425
+ ambiguous_char: N
2426
+ ambiguous_emission_prob: 0.25
2427
+ germline: T
2428
+ name: IGHV4-61_star_01_159
2429
+ transitions:
2430
+ IGHV4-61_star_01_160: 1.0
2431
+ - !!python/object:python.hmmwriter.State
2432
+ emissions:
2433
+ probs:
2434
+ A: 0.892384434032225
2435
+ C: 0.03587185532259167
2436
+ G: 0.03587185532259167
2437
+ T: 0.03587185532259167
2438
+ track: nukes
2439
+ extras:
2440
+ ambiguous_char: N
2441
+ ambiguous_emission_prob: 0.25
2442
+ germline: A
2443
+ name: IGHV4-61_star_01_160
2444
+ transitions:
2445
+ IGHV4-61_star_01_161: 1.0
2446
+ - !!python/object:python.hmmwriter.State
2447
+ emissions:
2448
+ probs:
2449
+ A: 0.03587185532259167
2450
+ C: 0.03587185532259167
2451
+ G: 0.03587185532259167
2452
+ T: 0.892384434032225
2453
+ track: nukes
2454
+ extras:
2455
+ ambiguous_char: N
2456
+ ambiguous_emission_prob: 0.25
2457
+ germline: T
2458
+ name: IGHV4-61_star_01_161
2459
+ transitions:
2460
+ IGHV4-61_star_01_162: 1.0
2461
+ - !!python/object:python.hmmwriter.State
2462
+ emissions:
2463
+ probs:
2464
+ A: 0.03587185532259167
2465
+ C: 0.03587185532259167
2466
+ G: 0.03587185532259167
2467
+ T: 0.892384434032225
2468
+ track: nukes
2469
+ extras:
2470
+ ambiguous_char: N
2471
+ ambiguous_emission_prob: 0.25
2472
+ germline: T
2473
+ name: IGHV4-61_star_01_162
2474
+ transitions:
2475
+ IGHV4-61_star_01_163: 1.0
2476
+ - !!python/object:python.hmmwriter.State
2477
+ emissions:
2478
+ probs:
2479
+ A: 0.892384434032225
2480
+ C: 0.03587185532259167
2481
+ G: 0.03587185532259167
2482
+ T: 0.03587185532259167
2483
+ track: nukes
2484
+ extras:
2485
+ ambiguous_char: N
2486
+ ambiguous_emission_prob: 0.25
2487
+ germline: A
2488
+ name: IGHV4-61_star_01_163
2489
+ transitions:
2490
+ IGHV4-61_star_01_164: 1.0
2491
+ - !!python/object:python.hmmwriter.State
2492
+ emissions:
2493
+ probs:
2494
+ A: 0.03587185532259167
2495
+ C: 0.892384434032225
2496
+ G: 0.03587185532259167
2497
+ T: 0.03587185532259167
2498
+ track: nukes
2499
+ extras:
2500
+ ambiguous_char: N
2501
+ ambiguous_emission_prob: 0.25
2502
+ germline: C
2503
+ name: IGHV4-61_star_01_164
2504
+ transitions:
2505
+ IGHV4-61_star_01_165: 1.0
2506
+ - !!python/object:python.hmmwriter.State
2507
+ emissions:
2508
+ probs:
2509
+ A: 0.892384434032225
2510
+ C: 0.03587185532259167
2511
+ G: 0.03587185532259167
2512
+ T: 0.03587185532259167
2513
+ track: nukes
2514
+ extras:
2515
+ ambiguous_char: N
2516
+ ambiguous_emission_prob: 0.25
2517
+ germline: A
2518
+ name: IGHV4-61_star_01_165
2519
+ transitions:
2520
+ IGHV4-61_star_01_166: 1.0
2521
+ - !!python/object:python.hmmwriter.State
2522
+ emissions:
2523
+ probs:
2524
+ A: 0.03587185532259167
2525
+ C: 0.03587185532259167
2526
+ G: 0.892384434032225
2527
+ T: 0.03587185532259167
2528
+ track: nukes
2529
+ extras:
2530
+ ambiguous_char: N
2531
+ ambiguous_emission_prob: 0.25
2532
+ germline: G
2533
+ name: IGHV4-61_star_01_166
2534
+ transitions:
2535
+ IGHV4-61_star_01_167: 1.0
2536
+ - !!python/object:python.hmmwriter.State
2537
+ emissions:
2538
+ probs:
2539
+ A: 0.03587185532259167
2540
+ C: 0.03587185532259167
2541
+ G: 0.03587185532259167
2542
+ T: 0.892384434032225
2543
+ track: nukes
2544
+ extras:
2545
+ ambiguous_char: N
2546
+ ambiguous_emission_prob: 0.25
2547
+ germline: T
2548
+ name: IGHV4-61_star_01_167
2549
+ transitions:
2550
+ IGHV4-61_star_01_168: 1.0
2551
+ - !!python/object:python.hmmwriter.State
2552
+ emissions:
2553
+ probs:
2554
+ A: 0.03587185532259167
2555
+ C: 0.03587185532259167
2556
+ G: 0.892384434032225
2557
+ T: 0.03587185532259167
2558
+ track: nukes
2559
+ extras:
2560
+ ambiguous_char: N
2561
+ ambiguous_emission_prob: 0.25
2562
+ germline: G
2563
+ name: IGHV4-61_star_01_168
2564
+ transitions:
2565
+ IGHV4-61_star_01_169: 1.0
2566
+ - !!python/object:python.hmmwriter.State
2567
+ emissions:
2568
+ probs:
2569
+ A: 0.0375
2570
+ C: 0.0375
2571
+ G: 0.8875
2572
+ T: 0.0375
2573
+ track: nukes
2574
+ extras:
2575
+ ambiguous_char: N
2576
+ ambiguous_emission_prob: 0.25
2577
+ germline: G
2578
+ name: IGHV4-61_star_01_169
2579
+ transitions:
2580
+ IGHV4-61_star_01_170: 1.0
2581
+ - !!python/object:python.hmmwriter.State
2582
+ emissions:
2583
+ probs:
2584
+ A: 0.0375
2585
+ C: 0.0375
2586
+ G: 0.8875
2587
+ T: 0.0375
2588
+ track: nukes
2589
+ extras:
2590
+ ambiguous_char: N
2591
+ ambiguous_emission_prob: 0.25
2592
+ germline: G
2593
+ name: IGHV4-61_star_01_170
2594
+ transitions:
2595
+ IGHV4-61_star_01_171: 1.0
2596
+ - !!python/object:python.hmmwriter.State
2597
+ emissions:
2598
+ probs:
2599
+ A: 0.892384434032225
2600
+ C: 0.03587185532259167
2601
+ G: 0.03587185532259167
2602
+ T: 0.03587185532259167
2603
+ track: nukes
2604
+ extras:
2605
+ ambiguous_char: N
2606
+ ambiguous_emission_prob: 0.25
2607
+ germline: A
2608
+ name: IGHV4-61_star_01_171
2609
+ transitions:
2610
+ IGHV4-61_star_01_172: 1.0
2611
+ - !!python/object:python.hmmwriter.State
2612
+ emissions:
2613
+ probs:
2614
+ A: 0.03587185532259167
2615
+ C: 0.03587185532259167
2616
+ G: 0.892384434032225
2617
+ T: 0.03587185532259167
2618
+ track: nukes
2619
+ extras:
2620
+ ambiguous_char: N
2621
+ ambiguous_emission_prob: 0.25
2622
+ germline: G
2623
+ name: IGHV4-61_star_01_172
2624
+ transitions:
2625
+ IGHV4-61_star_01_173: 1.0
2626
+ - !!python/object:python.hmmwriter.State
2627
+ emissions:
2628
+ probs:
2629
+ A: 0.03587185532259167
2630
+ C: 0.892384434032225
2631
+ G: 0.03587185532259167
2632
+ T: 0.03587185532259167
2633
+ track: nukes
2634
+ extras:
2635
+ ambiguous_char: N
2636
+ ambiguous_emission_prob: 0.25
2637
+ germline: C
2638
+ name: IGHV4-61_star_01_173
2639
+ transitions:
2640
+ IGHV4-61_star_01_174: 1.0
2641
+ - !!python/object:python.hmmwriter.State
2642
+ emissions:
2643
+ probs:
2644
+ A: 0.892384434032225
2645
+ C: 0.03587185532259167
2646
+ G: 0.03587185532259167
2647
+ T: 0.03587185532259167
2648
+ track: nukes
2649
+ extras:
2650
+ ambiguous_char: N
2651
+ ambiguous_emission_prob: 0.25
2652
+ germline: A
2653
+ name: IGHV4-61_star_01_174
2654
+ transitions:
2655
+ IGHV4-61_star_01_175: 1.0
2656
+ - !!python/object:python.hmmwriter.State
2657
+ emissions:
2658
+ probs:
2659
+ A: 0.03587185532259167
2660
+ C: 0.892384434032225
2661
+ G: 0.03587185532259167
2662
+ T: 0.03587185532259167
2663
+ track: nukes
2664
+ extras:
2665
+ ambiguous_char: N
2666
+ ambiguous_emission_prob: 0.25
2667
+ germline: C
2668
+ name: IGHV4-61_star_01_175
2669
+ transitions:
2670
+ IGHV4-61_star_01_176: 1.0
2671
+ - !!python/object:python.hmmwriter.State
2672
+ emissions:
2673
+ probs:
2674
+ A: 0.03587185532259167
2675
+ C: 0.892384434032225
2676
+ G: 0.03587185532259167
2677
+ T: 0.03587185532259167
2678
+ track: nukes
2679
+ extras:
2680
+ ambiguous_char: N
2681
+ ambiguous_emission_prob: 0.25
2682
+ germline: C
2683
+ name: IGHV4-61_star_01_176
2684
+ transitions:
2685
+ IGHV4-61_star_01_177: 1.0
2686
+ - !!python/object:python.hmmwriter.State
2687
+ emissions:
2688
+ probs:
2689
+ A: 0.892384434032225
2690
+ C: 0.03587185532259167
2691
+ G: 0.03587185532259167
2692
+ T: 0.03587185532259167
2693
+ track: nukes
2694
+ extras:
2695
+ ambiguous_char: N
2696
+ ambiguous_emission_prob: 0.25
2697
+ germline: A
2698
+ name: IGHV4-61_star_01_177
2699
+ transitions:
2700
+ IGHV4-61_star_01_178: 1.0
2701
+ - !!python/object:python.hmmwriter.State
2702
+ emissions:
2703
+ probs:
2704
+ A: 0.8875
2705
+ C: 0.0375
2706
+ G: 0.0375
2707
+ T: 0.0375
2708
+ track: nukes
2709
+ extras:
2710
+ ambiguous_char: N
2711
+ ambiguous_emission_prob: 0.25
2712
+ germline: A
2713
+ name: IGHV4-61_star_01_178
2714
+ transitions:
2715
+ IGHV4-61_star_01_179: 1.0
2716
+ - !!python/object:python.hmmwriter.State
2717
+ emissions:
2718
+ probs:
2719
+ A: 0.03587185532259167
2720
+ C: 0.892384434032225
2721
+ G: 0.03587185532259167
2722
+ T: 0.03587185532259167
2723
+ track: nukes
2724
+ extras:
2725
+ ambiguous_char: N
2726
+ ambiguous_emission_prob: 0.25
2727
+ germline: C
2728
+ name: IGHV4-61_star_01_179
2729
+ transitions:
2730
+ IGHV4-61_star_01_180: 1.0
2731
+ - !!python/object:python.hmmwriter.State
2732
+ emissions:
2733
+ probs:
2734
+ A: 0.03587185532259167
2735
+ C: 0.03587185532259167
2736
+ G: 0.03587185532259167
2737
+ T: 0.892384434032225
2738
+ track: nukes
2739
+ extras:
2740
+ ambiguous_char: N
2741
+ ambiguous_emission_prob: 0.25
2742
+ germline: T
2743
+ name: IGHV4-61_star_01_180
2744
+ transitions:
2745
+ IGHV4-61_star_01_181: 1.0
2746
+ - !!python/object:python.hmmwriter.State
2747
+ emissions:
2748
+ probs:
2749
+ A: 0.892384434032225
2750
+ C: 0.03587185532259167
2751
+ G: 0.03587185532259167
2752
+ T: 0.03587185532259167
2753
+ track: nukes
2754
+ extras:
2755
+ ambiguous_char: N
2756
+ ambiguous_emission_prob: 0.25
2757
+ germline: A
2758
+ name: IGHV4-61_star_01_181
2759
+ transitions:
2760
+ IGHV4-61_star_01_182: 1.0
2761
+ - !!python/object:python.hmmwriter.State
2762
+ emissions:
2763
+ probs:
2764
+ A: 0.03587185532259167
2765
+ C: 0.892384434032225
2766
+ G: 0.03587185532259167
2767
+ T: 0.03587185532259167
2768
+ track: nukes
2769
+ extras:
2770
+ ambiguous_char: N
2771
+ ambiguous_emission_prob: 0.25
2772
+ germline: C
2773
+ name: IGHV4-61_star_01_182
2774
+ transitions:
2775
+ IGHV4-61_star_01_183: 1.0
2776
+ - !!python/object:python.hmmwriter.State
2777
+ emissions:
2778
+ probs:
2779
+ A: 0.892384434032225
2780
+ C: 0.03587185532259167
2781
+ G: 0.03587185532259167
2782
+ T: 0.03587185532259167
2783
+ track: nukes
2784
+ extras:
2785
+ ambiguous_char: N
2786
+ ambiguous_emission_prob: 0.25
2787
+ germline: A
2788
+ name: IGHV4-61_star_01_183
2789
+ transitions:
2790
+ IGHV4-61_star_01_184: 1.0
2791
+ - !!python/object:python.hmmwriter.State
2792
+ emissions:
2793
+ probs:
2794
+ A: 0.892384434032225
2795
+ C: 0.03587185532259167
2796
+ G: 0.03587185532259167
2797
+ T: 0.03587185532259167
2798
+ track: nukes
2799
+ extras:
2800
+ ambiguous_char: N
2801
+ ambiguous_emission_prob: 0.25
2802
+ germline: A
2803
+ name: IGHV4-61_star_01_184
2804
+ transitions:
2805
+ IGHV4-61_star_01_185: 1.0
2806
+ - !!python/object:python.hmmwriter.State
2807
+ emissions:
2808
+ probs:
2809
+ A: 0.0375
2810
+ C: 0.8875
2811
+ G: 0.0375
2812
+ T: 0.0375
2813
+ track: nukes
2814
+ extras:
2815
+ ambiguous_char: N
2816
+ ambiguous_emission_prob: 0.25
2817
+ germline: C
2818
+ name: IGHV4-61_star_01_185
2819
+ transitions:
2820
+ IGHV4-61_star_01_186: 1.0
2821
+ - !!python/object:python.hmmwriter.State
2822
+ emissions:
2823
+ probs:
2824
+ A: 0.03587185532259167
2825
+ C: 0.892384434032225
2826
+ G: 0.03587185532259167
2827
+ T: 0.03587185532259167
2828
+ track: nukes
2829
+ extras:
2830
+ ambiguous_char: N
2831
+ ambiguous_emission_prob: 0.25
2832
+ germline: C
2833
+ name: IGHV4-61_star_01_186
2834
+ transitions:
2835
+ IGHV4-61_star_01_187: 1.0
2836
+ - !!python/object:python.hmmwriter.State
2837
+ emissions:
2838
+ probs:
2839
+ A: 0.0375
2840
+ C: 0.8875
2841
+ G: 0.0375
2842
+ T: 0.0375
2843
+ track: nukes
2844
+ extras:
2845
+ ambiguous_char: N
2846
+ ambiguous_emission_prob: 0.25
2847
+ germline: C
2848
+ name: IGHV4-61_star_01_187
2849
+ transitions:
2850
+ IGHV4-61_star_01_188: 1.0
2851
+ - !!python/object:python.hmmwriter.State
2852
+ emissions:
2853
+ probs:
2854
+ A: 0.03587185532259167
2855
+ C: 0.892384434032225
2856
+ G: 0.03587185532259167
2857
+ T: 0.03587185532259167
2858
+ track: nukes
2859
+ extras:
2860
+ ambiguous_char: N
2861
+ ambiguous_emission_prob: 0.25
2862
+ germline: C
2863
+ name: IGHV4-61_star_01_188
2864
+ transitions:
2865
+ IGHV4-61_star_01_189: 1.0
2866
+ - !!python/object:python.hmmwriter.State
2867
+ emissions:
2868
+ probs:
2869
+ A: 0.03587185532259167
2870
+ C: 0.03587185532259167
2871
+ G: 0.03587185532259167
2872
+ T: 0.892384434032225
2873
+ track: nukes
2874
+ extras:
2875
+ ambiguous_char: N
2876
+ ambiguous_emission_prob: 0.25
2877
+ germline: T
2878
+ name: IGHV4-61_star_01_189
2879
+ transitions:
2880
+ IGHV4-61_star_01_190: 1.0
2881
+ - !!python/object:python.hmmwriter.State
2882
+ emissions:
2883
+ probs:
2884
+ A: 0.03587185532259167
2885
+ C: 0.892384434032225
2886
+ G: 0.03587185532259167
2887
+ T: 0.03587185532259167
2888
+ track: nukes
2889
+ extras:
2890
+ ambiguous_char: N
2891
+ ambiguous_emission_prob: 0.25
2892
+ germline: C
2893
+ name: IGHV4-61_star_01_190
2894
+ transitions:
2895
+ IGHV4-61_star_01_191: 1.0
2896
+ - !!python/object:python.hmmwriter.State
2897
+ emissions:
2898
+ probs:
2899
+ A: 0.0375
2900
+ C: 0.8875
2901
+ G: 0.0375
2902
+ T: 0.0375
2903
+ track: nukes
2904
+ extras:
2905
+ ambiguous_char: N
2906
+ ambiguous_emission_prob: 0.25
2907
+ germline: C
2908
+ name: IGHV4-61_star_01_191
2909
+ transitions:
2910
+ IGHV4-61_star_01_192: 1.0
2911
+ - !!python/object:python.hmmwriter.State
2912
+ emissions:
2913
+ probs:
2914
+ A: 0.03587185532259167
2915
+ C: 0.892384434032225
2916
+ G: 0.03587185532259167
2917
+ T: 0.03587185532259167
2918
+ track: nukes
2919
+ extras:
2920
+ ambiguous_char: N
2921
+ ambiguous_emission_prob: 0.25
2922
+ germline: C
2923
+ name: IGHV4-61_star_01_192
2924
+ transitions:
2925
+ IGHV4-61_star_01_193: 1.0
2926
+ - !!python/object:python.hmmwriter.State
2927
+ emissions:
2928
+ probs:
2929
+ A: 0.03587185532259167
2930
+ C: 0.03587185532259167
2931
+ G: 0.03587185532259167
2932
+ T: 0.892384434032225
2933
+ track: nukes
2934
+ extras:
2935
+ ambiguous_char: N
2936
+ ambiguous_emission_prob: 0.25
2937
+ germline: T
2938
+ name: IGHV4-61_star_01_193
2939
+ transitions:
2940
+ IGHV4-61_star_01_194: 1.0
2941
+ - !!python/object:python.hmmwriter.State
2942
+ emissions:
2943
+ probs:
2944
+ A: 0.03587185532259167
2945
+ C: 0.892384434032225
2946
+ G: 0.03587185532259167
2947
+ T: 0.03587185532259167
2948
+ track: nukes
2949
+ extras:
2950
+ ambiguous_char: N
2951
+ ambiguous_emission_prob: 0.25
2952
+ germline: C
2953
+ name: IGHV4-61_star_01_194
2954
+ transitions:
2955
+ IGHV4-61_star_01_195: 1.0
2956
+ - !!python/object:python.hmmwriter.State
2957
+ emissions:
2958
+ probs:
2959
+ A: 0.8875
2960
+ C: 0.0375
2961
+ G: 0.0375
2962
+ T: 0.0375
2963
+ track: nukes
2964
+ extras:
2965
+ ambiguous_char: N
2966
+ ambiguous_emission_prob: 0.25
2967
+ germline: A
2968
+ name: IGHV4-61_star_01_195
2969
+ transitions:
2970
+ IGHV4-61_star_01_196: 1.0
2971
+ - !!python/object:python.hmmwriter.State
2972
+ emissions:
2973
+ probs:
2974
+ A: 0.892384434032225
2975
+ C: 0.03587185532259167
2976
+ G: 0.03587185532259167
2977
+ T: 0.03587185532259167
2978
+ track: nukes
2979
+ extras:
2980
+ ambiguous_char: N
2981
+ ambiguous_emission_prob: 0.25
2982
+ germline: A
2983
+ name: IGHV4-61_star_01_196
2984
+ transitions:
2985
+ IGHV4-61_star_01_197: 1.0
2986
+ - !!python/object:python.hmmwriter.State
2987
+ emissions:
2988
+ probs:
2989
+ A: 0.0375
2990
+ C: 0.0375
2991
+ G: 0.8875
2992
+ T: 0.0375
2993
+ track: nukes
2994
+ extras:
2995
+ ambiguous_char: N
2996
+ ambiguous_emission_prob: 0.25
2997
+ germline: G
2998
+ name: IGHV4-61_star_01_197
2999
+ transitions:
3000
+ IGHV4-61_star_01_198: 1.0
3001
+ - !!python/object:python.hmmwriter.State
3002
+ emissions:
3003
+ probs:
3004
+ A: 0.892384434032225
3005
+ C: 0.03587185532259167
3006
+ G: 0.03587185532259167
3007
+ T: 0.03587185532259167
3008
+ track: nukes
3009
+ extras:
3010
+ ambiguous_char: N
3011
+ ambiguous_emission_prob: 0.25
3012
+ germline: A
3013
+ name: IGHV4-61_star_01_198
3014
+ transitions:
3015
+ IGHV4-61_star_01_199: 1.0
3016
+ - !!python/object:python.hmmwriter.State
3017
+ emissions:
3018
+ probs:
3019
+ A: 0.0375
3020
+ C: 0.0375
3021
+ G: 0.8875
3022
+ T: 0.0375
3023
+ track: nukes
3024
+ extras:
3025
+ ambiguous_char: N
3026
+ ambiguous_emission_prob: 0.25
3027
+ germline: G
3028
+ name: IGHV4-61_star_01_199
3029
+ transitions:
3030
+ IGHV4-61_star_01_200: 1.0
3031
+ - !!python/object:python.hmmwriter.State
3032
+ emissions:
3033
+ probs:
3034
+ A: 0.03587185532259167
3035
+ C: 0.03587185532259167
3036
+ G: 0.03587185532259167
3037
+ T: 0.892384434032225
3038
+ track: nukes
3039
+ extras:
3040
+ ambiguous_char: N
3041
+ ambiguous_emission_prob: 0.25
3042
+ germline: T
3043
+ name: IGHV4-61_star_01_200
3044
+ transitions:
3045
+ IGHV4-61_star_01_201: 1.0
3046
+ - !!python/object:python.hmmwriter.State
3047
+ emissions:
3048
+ probs:
3049
+ A: 0.03587185532259167
3050
+ C: 0.892384434032225
3051
+ G: 0.03587185532259167
3052
+ T: 0.03587185532259167
3053
+ track: nukes
3054
+ extras:
3055
+ ambiguous_char: N
3056
+ ambiguous_emission_prob: 0.25
3057
+ germline: C
3058
+ name: IGHV4-61_star_01_201
3059
+ transitions:
3060
+ IGHV4-61_star_01_202: 1.0
3061
+ - !!python/object:python.hmmwriter.State
3062
+ emissions:
3063
+ probs:
3064
+ A: 0.03587185532259167
3065
+ C: 0.03587185532259167
3066
+ G: 0.892384434032225
3067
+ T: 0.03587185532259167
3068
+ track: nukes
3069
+ extras:
3070
+ ambiguous_char: N
3071
+ ambiguous_emission_prob: 0.25
3072
+ germline: G
3073
+ name: IGHV4-61_star_01_202
3074
+ transitions:
3075
+ IGHV4-61_star_01_203: 1.0
3076
+ - !!python/object:python.hmmwriter.State
3077
+ emissions:
3078
+ probs:
3079
+ A: 0.8875
3080
+ C: 0.0375
3081
+ G: 0.0375
3082
+ T: 0.0375
3083
+ track: nukes
3084
+ extras:
3085
+ ambiguous_char: N
3086
+ ambiguous_emission_prob: 0.25
3087
+ germline: A
3088
+ name: IGHV4-61_star_01_203
3089
+ transitions:
3090
+ IGHV4-61_star_01_204: 1.0
3091
+ - !!python/object:python.hmmwriter.State
3092
+ emissions:
3093
+ probs:
3094
+ A: 0.03587185532259167
3095
+ C: 0.03587185532259167
3096
+ G: 0.892384434032225
3097
+ T: 0.03587185532259167
3098
+ track: nukes
3099
+ extras:
3100
+ ambiguous_char: N
3101
+ ambiguous_emission_prob: 0.25
3102
+ germline: G
3103
+ name: IGHV4-61_star_01_204
3104
+ transitions:
3105
+ IGHV4-61_star_01_205: 1.0
3106
+ - !!python/object:python.hmmwriter.State
3107
+ emissions:
3108
+ probs:
3109
+ A: 0.03587185532259167
3110
+ C: 0.03587185532259167
3111
+ G: 0.03587185532259167
3112
+ T: 0.892384434032225
3113
+ track: nukes
3114
+ extras:
3115
+ ambiguous_char: N
3116
+ ambiguous_emission_prob: 0.25
3117
+ germline: T
3118
+ name: IGHV4-61_star_01_205
3119
+ transitions:
3120
+ IGHV4-61_star_01_206: 1.0
3121
+ - !!python/object:python.hmmwriter.State
3122
+ emissions:
3123
+ probs:
3124
+ A: 0.0375
3125
+ C: 0.8875
3126
+ G: 0.0375
3127
+ T: 0.0375
3128
+ track: nukes
3129
+ extras:
3130
+ ambiguous_char: N
3131
+ ambiguous_emission_prob: 0.25
3132
+ germline: C
3133
+ name: IGHV4-61_star_01_206
3134
+ transitions:
3135
+ IGHV4-61_star_01_207: 1.0
3136
+ - !!python/object:python.hmmwriter.State
3137
+ emissions:
3138
+ probs:
3139
+ A: 0.8875
3140
+ C: 0.0375
3141
+ G: 0.0375
3142
+ T: 0.0375
3143
+ track: nukes
3144
+ extras:
3145
+ ambiguous_char: N
3146
+ ambiguous_emission_prob: 0.25
3147
+ germline: A
3148
+ name: IGHV4-61_star_01_207
3149
+ transitions:
3150
+ IGHV4-61_star_01_208: 1.0
3151
+ - !!python/object:python.hmmwriter.State
3152
+ emissions:
3153
+ probs:
3154
+ A: 0.03587185532259167
3155
+ C: 0.892384434032225
3156
+ G: 0.03587185532259167
3157
+ T: 0.03587185532259167
3158
+ track: nukes
3159
+ extras:
3160
+ ambiguous_char: N
3161
+ ambiguous_emission_prob: 0.25
3162
+ germline: C
3163
+ name: IGHV4-61_star_01_208
3164
+ transitions:
3165
+ IGHV4-61_star_01_209: 1.0
3166
+ - !!python/object:python.hmmwriter.State
3167
+ emissions:
3168
+ probs:
3169
+ A: 0.03587185532259167
3170
+ C: 0.892384434032225
3171
+ G: 0.03587185532259167
3172
+ T: 0.03587185532259167
3173
+ track: nukes
3174
+ extras:
3175
+ ambiguous_char: N
3176
+ ambiguous_emission_prob: 0.25
3177
+ germline: C
3178
+ name: IGHV4-61_star_01_209
3179
+ transitions:
3180
+ IGHV4-61_star_01_210: 1.0
3181
+ - !!python/object:python.hmmwriter.State
3182
+ emissions:
3183
+ probs:
3184
+ A: 0.892384434032225
3185
+ C: 0.03587185532259167
3186
+ G: 0.03587185532259167
3187
+ T: 0.03587185532259167
3188
+ track: nukes
3189
+ extras:
3190
+ ambiguous_char: N
3191
+ ambiguous_emission_prob: 0.25
3192
+ germline: A
3193
+ name: IGHV4-61_star_01_210
3194
+ transitions:
3195
+ IGHV4-61_star_01_211: 1.0
3196
+ - !!python/object:python.hmmwriter.State
3197
+ emissions:
3198
+ probs:
3199
+ A: 0.03587185532259167
3200
+ C: 0.03587185532259167
3201
+ G: 0.03587185532259167
3202
+ T: 0.892384434032225
3203
+ track: nukes
3204
+ extras:
3205
+ ambiguous_char: N
3206
+ ambiguous_emission_prob: 0.25
3207
+ germline: T
3208
+ name: IGHV4-61_star_01_211
3209
+ transitions:
3210
+ IGHV4-61_star_01_212: 1.0
3211
+ - !!python/object:python.hmmwriter.State
3212
+ emissions:
3213
+ probs:
3214
+ A: 0.8875
3215
+ C: 0.0375
3216
+ G: 0.0375
3217
+ T: 0.0375
3218
+ track: nukes
3219
+ extras:
3220
+ ambiguous_char: N
3221
+ ambiguous_emission_prob: 0.25
3222
+ germline: A
3223
+ name: IGHV4-61_star_01_212
3224
+ transitions:
3225
+ IGHV4-61_star_01_213: 1.0
3226
+ - !!python/object:python.hmmwriter.State
3227
+ emissions:
3228
+ probs:
3229
+ A: 0.03587185532259167
3230
+ C: 0.03587185532259167
3231
+ G: 0.03587185532259167
3232
+ T: 0.892384434032225
3233
+ track: nukes
3234
+ extras:
3235
+ ambiguous_char: N
3236
+ ambiguous_emission_prob: 0.25
3237
+ germline: T
3238
+ name: IGHV4-61_star_01_213
3239
+ transitions:
3240
+ IGHV4-61_star_01_214: 1.0
3241
+ - !!python/object:python.hmmwriter.State
3242
+ emissions:
3243
+ probs:
3244
+ A: 0.03587185532259167
3245
+ C: 0.892384434032225
3246
+ G: 0.03587185532259167
3247
+ T: 0.03587185532259167
3248
+ track: nukes
3249
+ extras:
3250
+ ambiguous_char: N
3251
+ ambiguous_emission_prob: 0.25
3252
+ germline: C
3253
+ name: IGHV4-61_star_01_214
3254
+ transitions:
3255
+ IGHV4-61_star_01_215: 1.0
3256
+ - !!python/object:python.hmmwriter.State
3257
+ emissions:
3258
+ probs:
3259
+ A: 0.8875
3260
+ C: 0.0375
3261
+ G: 0.0375
3262
+ T: 0.0375
3263
+ track: nukes
3264
+ extras:
3265
+ ambiguous_char: N
3266
+ ambiguous_emission_prob: 0.25
3267
+ germline: A
3268
+ name: IGHV4-61_star_01_215
3269
+ transitions:
3270
+ IGHV4-61_star_01_216: 1.0
3271
+ - !!python/object:python.hmmwriter.State
3272
+ emissions:
3273
+ probs:
3274
+ A: 0.0375
3275
+ C: 0.0375
3276
+ G: 0.8875
3277
+ T: 0.0375
3278
+ track: nukes
3279
+ extras:
3280
+ ambiguous_char: N
3281
+ ambiguous_emission_prob: 0.25
3282
+ germline: G
3283
+ name: IGHV4-61_star_01_216
3284
+ transitions:
3285
+ IGHV4-61_star_01_217: 1.0
3286
+ - !!python/object:python.hmmwriter.State
3287
+ emissions:
3288
+ probs:
3289
+ A: 0.03587185532259167
3290
+ C: 0.03587185532259167
3291
+ G: 0.03587185532259167
3292
+ T: 0.892384434032225
3293
+ track: nukes
3294
+ extras:
3295
+ ambiguous_char: N
3296
+ ambiguous_emission_prob: 0.25
3297
+ germline: T
3298
+ name: IGHV4-61_star_01_217
3299
+ transitions:
3300
+ IGHV4-61_star_01_218: 1.0
3301
+ - !!python/object:python.hmmwriter.State
3302
+ emissions:
3303
+ probs:
3304
+ A: 0.8875
3305
+ C: 0.0375
3306
+ G: 0.0375
3307
+ T: 0.0375
3308
+ track: nukes
3309
+ extras:
3310
+ ambiguous_char: N
3311
+ ambiguous_emission_prob: 0.25
3312
+ germline: A
3313
+ name: IGHV4-61_star_01_218
3314
+ transitions:
3315
+ IGHV4-61_star_01_219: 1.0
3316
+ - !!python/object:python.hmmwriter.State
3317
+ emissions:
3318
+ probs:
3319
+ A: 0.03587185532259167
3320
+ C: 0.03587185532259167
3321
+ G: 0.892384434032225
3322
+ T: 0.03587185532259167
3323
+ track: nukes
3324
+ extras:
3325
+ ambiguous_char: N
3326
+ ambiguous_emission_prob: 0.25
3327
+ germline: G
3328
+ name: IGHV4-61_star_01_219
3329
+ transitions:
3330
+ IGHV4-61_star_01_220: 1.0
3331
+ - !!python/object:python.hmmwriter.State
3332
+ emissions:
3333
+ probs:
3334
+ A: 0.892384434032225
3335
+ C: 0.03587185532259167
3336
+ G: 0.03587185532259167
3337
+ T: 0.03587185532259167
3338
+ track: nukes
3339
+ extras:
3340
+ ambiguous_char: N
3341
+ ambiguous_emission_prob: 0.25
3342
+ germline: A
3343
+ name: IGHV4-61_star_01_220
3344
+ transitions:
3345
+ IGHV4-61_star_01_221: 1.0
3346
+ - !!python/object:python.hmmwriter.State
3347
+ emissions:
3348
+ probs:
3349
+ A: 0.03587185532259167
3350
+ C: 0.892384434032225
3351
+ G: 0.03587185532259167
3352
+ T: 0.03587185532259167
3353
+ track: nukes
3354
+ extras:
3355
+ ambiguous_char: N
3356
+ ambiguous_emission_prob: 0.25
3357
+ germline: C
3358
+ name: IGHV4-61_star_01_221
3359
+ transitions:
3360
+ IGHV4-61_star_01_222: 1.0
3361
+ - !!python/object:python.hmmwriter.State
3362
+ emissions:
3363
+ probs:
3364
+ A: 0.892384434032225
3365
+ C: 0.03587185532259167
3366
+ G: 0.03587185532259167
3367
+ T: 0.03587185532259167
3368
+ track: nukes
3369
+ extras:
3370
+ ambiguous_char: N
3371
+ ambiguous_emission_prob: 0.25
3372
+ germline: A
3373
+ name: IGHV4-61_star_01_222
3374
+ transitions:
3375
+ IGHV4-61_star_01_223: 1.0
3376
+ - !!python/object:python.hmmwriter.State
3377
+ emissions:
3378
+ probs:
3379
+ A: 0.0375
3380
+ C: 0.8875
3381
+ G: 0.0375
3382
+ T: 0.0375
3383
+ track: nukes
3384
+ extras:
3385
+ ambiguous_char: N
3386
+ ambiguous_emission_prob: 0.25
3387
+ germline: C
3388
+ name: IGHV4-61_star_01_223
3389
+ transitions:
3390
+ IGHV4-61_star_01_224: 1.0
3391
+ - !!python/object:python.hmmwriter.State
3392
+ emissions:
3393
+ probs:
3394
+ A: 0.03587185532259167
3395
+ C: 0.03587185532259167
3396
+ G: 0.892384434032225
3397
+ T: 0.03587185532259167
3398
+ track: nukes
3399
+ extras:
3400
+ ambiguous_char: N
3401
+ ambiguous_emission_prob: 0.25
3402
+ germline: G
3403
+ name: IGHV4-61_star_01_224
3404
+ transitions:
3405
+ IGHV4-61_star_01_225: 1.0
3406
+ - !!python/object:python.hmmwriter.State
3407
+ emissions:
3408
+ probs:
3409
+ A: 0.03587185532259167
3410
+ C: 0.03587185532259167
3411
+ G: 0.03587185532259167
3412
+ T: 0.892384434032225
3413
+ track: nukes
3414
+ extras:
3415
+ ambiguous_char: N
3416
+ ambiguous_emission_prob: 0.25
3417
+ germline: T
3418
+ name: IGHV4-61_star_01_225
3419
+ transitions:
3420
+ IGHV4-61_star_01_226: 1.0
3421
+ - !!python/object:python.hmmwriter.State
3422
+ emissions:
3423
+ probs:
3424
+ A: 0.03587185532259167
3425
+ C: 0.892384434032225
3426
+ G: 0.03587185532259167
3427
+ T: 0.03587185532259167
3428
+ track: nukes
3429
+ extras:
3430
+ ambiguous_char: N
3431
+ ambiguous_emission_prob: 0.25
3432
+ germline: C
3433
+ name: IGHV4-61_star_01_226
3434
+ transitions:
3435
+ IGHV4-61_star_01_227: 1.0
3436
+ - !!python/object:python.hmmwriter.State
3437
+ emissions:
3438
+ probs:
3439
+ A: 0.03587185532259167
3440
+ C: 0.892384434032225
3441
+ G: 0.03587185532259167
3442
+ T: 0.03587185532259167
3443
+ track: nukes
3444
+ extras:
3445
+ ambiguous_char: N
3446
+ ambiguous_emission_prob: 0.25
3447
+ germline: C
3448
+ name: IGHV4-61_star_01_227
3449
+ transitions:
3450
+ IGHV4-61_star_01_228: 1.0
3451
+ - !!python/object:python.hmmwriter.State
3452
+ emissions:
3453
+ probs:
3454
+ A: 0.892384434032225
3455
+ C: 0.03587185532259167
3456
+ G: 0.03587185532259167
3457
+ T: 0.03587185532259167
3458
+ track: nukes
3459
+ extras:
3460
+ ambiguous_char: N
3461
+ ambiguous_emission_prob: 0.25
3462
+ germline: A
3463
+ name: IGHV4-61_star_01_228
3464
+ transitions:
3465
+ IGHV4-61_star_01_229: 1.0
3466
+ - !!python/object:python.hmmwriter.State
3467
+ emissions:
3468
+ probs:
3469
+ A: 0.892384434032225
3470
+ C: 0.03587185532259167
3471
+ G: 0.03587185532259167
3472
+ T: 0.03587185532259167
3473
+ track: nukes
3474
+ extras:
3475
+ ambiguous_char: N
3476
+ ambiguous_emission_prob: 0.25
3477
+ germline: A
3478
+ name: IGHV4-61_star_01_229
3479
+ transitions:
3480
+ IGHV4-61_star_01_230: 1.0
3481
+ - !!python/object:python.hmmwriter.State
3482
+ emissions:
3483
+ probs:
3484
+ A: 0.03587185532259167
3485
+ C: 0.03587185532259167
3486
+ G: 0.892384434032225
3487
+ T: 0.03587185532259167
3488
+ track: nukes
3489
+ extras:
3490
+ ambiguous_char: N
3491
+ ambiguous_emission_prob: 0.25
3492
+ germline: G
3493
+ name: IGHV4-61_star_01_230
3494
+ transitions:
3495
+ IGHV4-61_star_01_231: 1.0
3496
+ - !!python/object:python.hmmwriter.State
3497
+ emissions:
3498
+ probs:
3499
+ A: 0.892384434032225
3500
+ C: 0.03587185532259167
3501
+ G: 0.03587185532259167
3502
+ T: 0.03587185532259167
3503
+ track: nukes
3504
+ extras:
3505
+ ambiguous_char: N
3506
+ ambiguous_emission_prob: 0.25
3507
+ germline: A
3508
+ name: IGHV4-61_star_01_231
3509
+ transitions:
3510
+ IGHV4-61_star_01_232: 1.0
3511
+ - !!python/object:python.hmmwriter.State
3512
+ emissions:
3513
+ probs:
3514
+ A: 0.8875
3515
+ C: 0.0375
3516
+ G: 0.0375
3517
+ T: 0.0375
3518
+ track: nukes
3519
+ extras:
3520
+ ambiguous_char: N
3521
+ ambiguous_emission_prob: 0.25
3522
+ germline: A
3523
+ name: IGHV4-61_star_01_232
3524
+ transitions:
3525
+ IGHV4-61_star_01_233: 1.0
3526
+ - !!python/object:python.hmmwriter.State
3527
+ emissions:
3528
+ probs:
3529
+ A: 0.0375
3530
+ C: 0.8875
3531
+ G: 0.0375
3532
+ T: 0.0375
3533
+ track: nukes
3534
+ extras:
3535
+ ambiguous_char: N
3536
+ ambiguous_emission_prob: 0.25
3537
+ germline: C
3538
+ name: IGHV4-61_star_01_233
3539
+ transitions:
3540
+ IGHV4-61_star_01_234: 1.0
3541
+ - !!python/object:python.hmmwriter.State
3542
+ emissions:
3543
+ probs:
3544
+ A: 0.03587185532259167
3545
+ C: 0.892384434032225
3546
+ G: 0.03587185532259167
3547
+ T: 0.03587185532259167
3548
+ track: nukes
3549
+ extras:
3550
+ ambiguous_char: N
3551
+ ambiguous_emission_prob: 0.25
3552
+ germline: C
3553
+ name: IGHV4-61_star_01_234
3554
+ transitions:
3555
+ IGHV4-61_star_01_235: 1.0
3556
+ - !!python/object:python.hmmwriter.State
3557
+ emissions:
3558
+ probs:
3559
+ A: 0.8875
3560
+ C: 0.0375
3561
+ G: 0.0375
3562
+ T: 0.0375
3563
+ track: nukes
3564
+ extras:
3565
+ ambiguous_char: N
3566
+ ambiguous_emission_prob: 0.25
3567
+ germline: A
3568
+ name: IGHV4-61_star_01_235
3569
+ transitions:
3570
+ IGHV4-61_star_01_236: 1.0
3571
+ - !!python/object:python.hmmwriter.State
3572
+ emissions:
3573
+ probs:
3574
+ A: 0.03587185532259167
3575
+ C: 0.03587185532259167
3576
+ G: 0.892384434032225
3577
+ T: 0.03587185532259167
3578
+ track: nukes
3579
+ extras:
3580
+ ambiguous_char: N
3581
+ ambiguous_emission_prob: 0.25
3582
+ germline: G
3583
+ name: IGHV4-61_star_01_236
3584
+ transitions:
3585
+ IGHV4-61_star_01_237: 1.0
3586
+ - !!python/object:python.hmmwriter.State
3587
+ emissions:
3588
+ probs:
3589
+ A: 0.03587185532259167
3590
+ C: 0.03587185532259167
3591
+ G: 0.03587185532259167
3592
+ T: 0.892384434032225
3593
+ track: nukes
3594
+ extras:
3595
+ ambiguous_char: N
3596
+ ambiguous_emission_prob: 0.25
3597
+ germline: T
3598
+ name: IGHV4-61_star_01_237
3599
+ transitions:
3600
+ IGHV4-61_star_01_238: 1.0
3601
+ - !!python/object:python.hmmwriter.State
3602
+ emissions:
3603
+ probs:
3604
+ A: 0.03587185532259167
3605
+ C: 0.03587185532259167
3606
+ G: 0.03587185532259167
3607
+ T: 0.892384434032225
3608
+ track: nukes
3609
+ extras:
3610
+ ambiguous_char: N
3611
+ ambiguous_emission_prob: 0.25
3612
+ germline: T
3613
+ name: IGHV4-61_star_01_238
3614
+ transitions:
3615
+ IGHV4-61_star_01_239: 1.0
3616
+ - !!python/object:python.hmmwriter.State
3617
+ emissions:
3618
+ probs:
3619
+ A: 0.0375
3620
+ C: 0.8875
3621
+ G: 0.0375
3622
+ T: 0.0375
3623
+ track: nukes
3624
+ extras:
3625
+ ambiguous_char: N
3626
+ ambiguous_emission_prob: 0.25
3627
+ germline: C
3628
+ name: IGHV4-61_star_01_239
3629
+ transitions:
3630
+ IGHV4-61_star_01_240: 1.0
3631
+ - !!python/object:python.hmmwriter.State
3632
+ emissions:
3633
+ probs:
3634
+ A: 0.03587185532259167
3635
+ C: 0.03587185532259167
3636
+ G: 0.03587185532259167
3637
+ T: 0.892384434032225
3638
+ track: nukes
3639
+ extras:
3640
+ ambiguous_char: N
3641
+ ambiguous_emission_prob: 0.25
3642
+ germline: T
3643
+ name: IGHV4-61_star_01_240
3644
+ transitions:
3645
+ IGHV4-61_star_01_241: 1.0
3646
+ - !!python/object:python.hmmwriter.State
3647
+ emissions:
3648
+ probs:
3649
+ A: 0.03587185532259167
3650
+ C: 0.892384434032225
3651
+ G: 0.03587185532259167
3652
+ T: 0.03587185532259167
3653
+ track: nukes
3654
+ extras:
3655
+ ambiguous_char: N
3656
+ ambiguous_emission_prob: 0.25
3657
+ germline: C
3658
+ name: IGHV4-61_star_01_241
3659
+ transitions:
3660
+ IGHV4-61_star_01_242: 1.0
3661
+ - !!python/object:python.hmmwriter.State
3662
+ emissions:
3663
+ probs:
3664
+ A: 0.0375
3665
+ C: 0.8875
3666
+ G: 0.0375
3667
+ T: 0.0375
3668
+ track: nukes
3669
+ extras:
3670
+ ambiguous_char: N
3671
+ ambiguous_emission_prob: 0.25
3672
+ germline: C
3673
+ name: IGHV4-61_star_01_242
3674
+ transitions:
3675
+ IGHV4-61_star_01_243: 1.0
3676
+ - !!python/object:python.hmmwriter.State
3677
+ emissions:
3678
+ probs:
3679
+ A: 0.03587185532259167
3680
+ C: 0.892384434032225
3681
+ G: 0.03587185532259167
3682
+ T: 0.03587185532259167
3683
+ track: nukes
3684
+ extras:
3685
+ ambiguous_char: N
3686
+ ambiguous_emission_prob: 0.25
3687
+ germline: C
3688
+ name: IGHV4-61_star_01_243
3689
+ transitions:
3690
+ IGHV4-61_star_01_244: 1.0
3691
+ - !!python/object:python.hmmwriter.State
3692
+ emissions:
3693
+ probs:
3694
+ A: 0.03587185532259167
3695
+ C: 0.03587185532259167
3696
+ G: 0.03587185532259167
3697
+ T: 0.892384434032225
3698
+ track: nukes
3699
+ extras:
3700
+ ambiguous_char: N
3701
+ ambiguous_emission_prob: 0.25
3702
+ germline: T
3703
+ name: IGHV4-61_star_01_244
3704
+ transitions:
3705
+ IGHV4-61_star_01_245: 1.0
3706
+ - !!python/object:python.hmmwriter.State
3707
+ emissions:
3708
+ probs:
3709
+ A: 0.03587185532259167
3710
+ C: 0.03587185532259167
3711
+ G: 0.892384434032225
3712
+ T: 0.03587185532259167
3713
+ track: nukes
3714
+ extras:
3715
+ ambiguous_char: N
3716
+ ambiguous_emission_prob: 0.25
3717
+ germline: G
3718
+ name: IGHV4-61_star_01_245
3719
+ transitions:
3720
+ IGHV4-61_star_01_246: 1.0
3721
+ - !!python/object:python.hmmwriter.State
3722
+ emissions:
3723
+ probs:
3724
+ A: 0.892384434032225
3725
+ C: 0.03587185532259167
3726
+ G: 0.03587185532259167
3727
+ T: 0.03587185532259167
3728
+ track: nukes
3729
+ extras:
3730
+ ambiguous_char: N
3731
+ ambiguous_emission_prob: 0.25
3732
+ germline: A
3733
+ name: IGHV4-61_star_01_246
3734
+ transitions:
3735
+ IGHV4-61_star_01_247: 1.0
3736
+ - !!python/object:python.hmmwriter.State
3737
+ emissions:
3738
+ probs:
3739
+ A: 0.8875
3740
+ C: 0.0375
3741
+ G: 0.0375
3742
+ T: 0.0375
3743
+ track: nukes
3744
+ extras:
3745
+ ambiguous_char: N
3746
+ ambiguous_emission_prob: 0.25
3747
+ germline: A
3748
+ name: IGHV4-61_star_01_247
3749
+ transitions:
3750
+ IGHV4-61_star_01_248: 1.0
3751
+ - !!python/object:python.hmmwriter.State
3752
+ emissions:
3753
+ probs:
3754
+ A: 0.0375
3755
+ C: 0.0375
3756
+ G: 0.8875
3757
+ T: 0.0375
3758
+ track: nukes
3759
+ extras:
3760
+ ambiguous_char: N
3761
+ ambiguous_emission_prob: 0.25
3762
+ germline: G
3763
+ name: IGHV4-61_star_01_248
3764
+ transitions:
3765
+ IGHV4-61_star_01_249: 1.0
3766
+ - !!python/object:python.hmmwriter.State
3767
+ emissions:
3768
+ probs:
3769
+ A: 0.03587185532259167
3770
+ C: 0.892384434032225
3771
+ G: 0.03587185532259167
3772
+ T: 0.03587185532259167
3773
+ track: nukes
3774
+ extras:
3775
+ ambiguous_char: N
3776
+ ambiguous_emission_prob: 0.25
3777
+ germline: C
3778
+ name: IGHV4-61_star_01_249
3779
+ transitions:
3780
+ IGHV4-61_star_01_250: 1.0
3781
+ - !!python/object:python.hmmwriter.State
3782
+ emissions:
3783
+ probs:
3784
+ A: 0.03587185532259167
3785
+ C: 0.03587185532259167
3786
+ G: 0.03587185532259167
3787
+ T: 0.892384434032225
3788
+ track: nukes
3789
+ extras:
3790
+ ambiguous_char: N
3791
+ ambiguous_emission_prob: 0.25
3792
+ germline: T
3793
+ name: IGHV4-61_star_01_250
3794
+ transitions:
3795
+ IGHV4-61_star_01_251: 1.0
3796
+ - !!python/object:python.hmmwriter.State
3797
+ emissions:
3798
+ probs:
3799
+ A: 0.03587185532259167
3800
+ C: 0.03587185532259167
3801
+ G: 0.892384434032225
3802
+ T: 0.03587185532259167
3803
+ track: nukes
3804
+ extras:
3805
+ ambiguous_char: N
3806
+ ambiguous_emission_prob: 0.25
3807
+ germline: G
3808
+ name: IGHV4-61_star_01_251
3809
+ transitions:
3810
+ IGHV4-61_star_01_252: 1.0
3811
+ - !!python/object:python.hmmwriter.State
3812
+ emissions:
3813
+ probs:
3814
+ A: 0.892384434032225
3815
+ C: 0.03587185532259167
3816
+ G: 0.03587185532259167
3817
+ T: 0.03587185532259167
3818
+ track: nukes
3819
+ extras:
3820
+ ambiguous_char: N
3821
+ ambiguous_emission_prob: 0.25
3822
+ germline: A
3823
+ name: IGHV4-61_star_01_252
3824
+ transitions:
3825
+ IGHV4-61_star_01_253: 1.0
3826
+ - !!python/object:python.hmmwriter.State
3827
+ emissions:
3828
+ probs:
3829
+ A: 0.0375
3830
+ C: 0.0375
3831
+ G: 0.8875
3832
+ T: 0.0375
3833
+ track: nukes
3834
+ extras:
3835
+ ambiguous_char: N
3836
+ ambiguous_emission_prob: 0.25
3837
+ germline: G
3838
+ name: IGHV4-61_star_01_253
3839
+ transitions:
3840
+ IGHV4-61_star_01_254: 1.0
3841
+ - !!python/object:python.hmmwriter.State
3842
+ emissions:
3843
+ probs:
3844
+ A: 0.03587185532259167
3845
+ C: 0.892384434032225
3846
+ G: 0.03587185532259167
3847
+ T: 0.03587185532259167
3848
+ track: nukes
3849
+ extras:
3850
+ ambiguous_char: N
3851
+ ambiguous_emission_prob: 0.25
3852
+ germline: C
3853
+ name: IGHV4-61_star_01_254
3854
+ transitions:
3855
+ IGHV4-61_star_01_255: 1.0
3856
+ - !!python/object:python.hmmwriter.State
3857
+ emissions:
3858
+ probs:
3859
+ A: 0.03587185532259167
3860
+ C: 0.03587185532259167
3861
+ G: 0.03587185532259167
3862
+ T: 0.892384434032225
3863
+ track: nukes
3864
+ extras:
3865
+ ambiguous_char: N
3866
+ ambiguous_emission_prob: 0.25
3867
+ germline: T
3868
+ name: IGHV4-61_star_01_255
3869
+ transitions:
3870
+ IGHV4-61_star_01_256: 1.0
3871
+ - !!python/object:python.hmmwriter.State
3872
+ emissions:
3873
+ probs:
3874
+ A: 0.0375
3875
+ C: 0.8875
3876
+ G: 0.0375
3877
+ T: 0.0375
3878
+ track: nukes
3879
+ extras:
3880
+ ambiguous_char: N
3881
+ ambiguous_emission_prob: 0.25
3882
+ germline: C
3883
+ name: IGHV4-61_star_01_256
3884
+ transitions:
3885
+ IGHV4-61_star_01_257: 1.0
3886
+ - !!python/object:python.hmmwriter.State
3887
+ emissions:
3888
+ probs:
3889
+ A: 0.0375
3890
+ C: 0.0375
3891
+ G: 0.0375
3892
+ T: 0.8875
3893
+ track: nukes
3894
+ extras:
3895
+ ambiguous_char: N
3896
+ ambiguous_emission_prob: 0.25
3897
+ germline: T
3898
+ name: IGHV4-61_star_01_257
3899
+ transitions:
3900
+ IGHV4-61_star_01_258: 1.0
3901
+ - !!python/object:python.hmmwriter.State
3902
+ emissions:
3903
+ probs:
3904
+ A: 0.03587185532259167
3905
+ C: 0.03587185532259167
3906
+ G: 0.892384434032225
3907
+ T: 0.03587185532259167
3908
+ track: nukes
3909
+ extras:
3910
+ ambiguous_char: N
3911
+ ambiguous_emission_prob: 0.25
3912
+ germline: G
3913
+ name: IGHV4-61_star_01_258
3914
+ transitions:
3915
+ IGHV4-61_star_01_259: 1.0
3916
+ - !!python/object:python.hmmwriter.State
3917
+ emissions:
3918
+ probs:
3919
+ A: 0.03587185532259167
3920
+ C: 0.03587185532259167
3921
+ G: 0.03587185532259167
3922
+ T: 0.892384434032225
3923
+ track: nukes
3924
+ extras:
3925
+ ambiguous_char: N
3926
+ ambiguous_emission_prob: 0.25
3927
+ germline: T
3928
+ name: IGHV4-61_star_01_259
3929
+ transitions:
3930
+ IGHV4-61_star_01_260: 1.0
3931
+ - !!python/object:python.hmmwriter.State
3932
+ emissions:
3933
+ probs:
3934
+ A: 0.03587185532259167
3935
+ C: 0.03587185532259167
3936
+ G: 0.892384434032225
3937
+ T: 0.03587185532259167
3938
+ track: nukes
3939
+ extras:
3940
+ ambiguous_char: N
3941
+ ambiguous_emission_prob: 0.25
3942
+ germline: G
3943
+ name: IGHV4-61_star_01_260
3944
+ transitions:
3945
+ IGHV4-61_star_01_261: 1.0
3946
+ - !!python/object:python.hmmwriter.State
3947
+ emissions:
3948
+ probs:
3949
+ A: 0.892384434032225
3950
+ C: 0.03587185532259167
3951
+ G: 0.03587185532259167
3952
+ T: 0.03587185532259167
3953
+ track: nukes
3954
+ extras:
3955
+ ambiguous_char: N
3956
+ ambiguous_emission_prob: 0.25
3957
+ germline: A
3958
+ name: IGHV4-61_star_01_261
3959
+ transitions:
3960
+ IGHV4-61_star_01_262: 1.0
3961
+ - !!python/object:python.hmmwriter.State
3962
+ emissions:
3963
+ probs:
3964
+ A: 0.03587185532259167
3965
+ C: 0.892384434032225
3966
+ G: 0.03587185532259167
3967
+ T: 0.03587185532259167
3968
+ track: nukes
3969
+ extras:
3970
+ ambiguous_char: N
3971
+ ambiguous_emission_prob: 0.25
3972
+ germline: C
3973
+ name: IGHV4-61_star_01_262
3974
+ transitions:
3975
+ IGHV4-61_star_01_263: 1.0
3976
+ - !!python/object:python.hmmwriter.State
3977
+ emissions:
3978
+ probs:
3979
+ A: 0.03587185532259167
3980
+ C: 0.892384434032225
3981
+ G: 0.03587185532259167
3982
+ T: 0.03587185532259167
3983
+ track: nukes
3984
+ extras:
3985
+ ambiguous_char: N
3986
+ ambiguous_emission_prob: 0.25
3987
+ germline: C
3988
+ name: IGHV4-61_star_01_263
3989
+ transitions:
3990
+ IGHV4-61_star_01_264: 1.0
3991
+ - !!python/object:python.hmmwriter.State
3992
+ emissions:
3993
+ probs:
3994
+ A: 0.03587185532259167
3995
+ C: 0.03587185532259167
3996
+ G: 0.892384434032225
3997
+ T: 0.03587185532259167
3998
+ track: nukes
3999
+ extras:
4000
+ ambiguous_char: N
4001
+ ambiguous_emission_prob: 0.25
4002
+ germline: G
4003
+ name: IGHV4-61_star_01_264
4004
+ transitions:
4005
+ IGHV4-61_star_01_265: 1.0
4006
+ - !!python/object:python.hmmwriter.State
4007
+ emissions:
4008
+ probs:
4009
+ A: 0.03587185532259167
4010
+ C: 0.892384434032225
4011
+ G: 0.03587185532259167
4012
+ T: 0.03587185532259167
4013
+ track: nukes
4014
+ extras:
4015
+ ambiguous_char: N
4016
+ ambiguous_emission_prob: 0.25
4017
+ germline: C
4018
+ name: IGHV4-61_star_01_265
4019
+ transitions:
4020
+ IGHV4-61_star_01_266: 1.0
4021
+ - !!python/object:python.hmmwriter.State
4022
+ emissions:
4023
+ probs:
4024
+ A: 0.0375
4025
+ C: 0.0375
4026
+ G: 0.0375
4027
+ T: 0.8875
4028
+ track: nukes
4029
+ extras:
4030
+ ambiguous_char: N
4031
+ ambiguous_emission_prob: 0.25
4032
+ germline: T
4033
+ name: IGHV4-61_star_01_266
4034
+ transitions:
4035
+ IGHV4-61_star_01_267: 1.0
4036
+ - !!python/object:python.hmmwriter.State
4037
+ emissions:
4038
+ probs:
4039
+ A: 0.0375
4040
+ C: 0.0375
4041
+ G: 0.8875
4042
+ T: 0.0375
4043
+ track: nukes
4044
+ extras:
4045
+ ambiguous_char: N
4046
+ ambiguous_emission_prob: 0.25
4047
+ germline: G
4048
+ name: IGHV4-61_star_01_267
4049
+ transitions:
4050
+ IGHV4-61_star_01_268: 1.0
4051
+ - !!python/object:python.hmmwriter.State
4052
+ emissions:
4053
+ probs:
4054
+ A: 0.03587185532259167
4055
+ C: 0.892384434032225
4056
+ G: 0.03587185532259167
4057
+ T: 0.03587185532259167
4058
+ track: nukes
4059
+ extras:
4060
+ ambiguous_char: N
4061
+ ambiguous_emission_prob: 0.25
4062
+ germline: C
4063
+ name: IGHV4-61_star_01_268
4064
+ transitions:
4065
+ IGHV4-61_star_01_269: 1.0
4066
+ - !!python/object:python.hmmwriter.State
4067
+ emissions:
4068
+ probs:
4069
+ A: 0.0375
4070
+ C: 0.0375
4071
+ G: 0.8875
4072
+ T: 0.0375
4073
+ track: nukes
4074
+ extras:
4075
+ ambiguous_char: N
4076
+ ambiguous_emission_prob: 0.25
4077
+ germline: G
4078
+ name: IGHV4-61_star_01_269
4079
+ transitions:
4080
+ IGHV4-61_star_01_270: 1.0
4081
+ - !!python/object:python.hmmwriter.State
4082
+ emissions:
4083
+ probs:
4084
+ A: 0.0375
4085
+ C: 0.0375
4086
+ G: 0.8875
4087
+ T: 0.0375
4088
+ track: nukes
4089
+ extras:
4090
+ ambiguous_char: N
4091
+ ambiguous_emission_prob: 0.25
4092
+ germline: G
4093
+ name: IGHV4-61_star_01_270
4094
+ transitions:
4095
+ IGHV4-61_star_01_271: 1.0
4096
+ - !!python/object:python.hmmwriter.State
4097
+ emissions:
4098
+ probs:
4099
+ A: 0.892384434032225
4100
+ C: 0.03587185532259167
4101
+ G: 0.03587185532259167
4102
+ T: 0.03587185532259167
4103
+ track: nukes
4104
+ extras:
4105
+ ambiguous_char: N
4106
+ ambiguous_emission_prob: 0.25
4107
+ germline: A
4108
+ name: IGHV4-61_star_01_271
4109
+ transitions:
4110
+ IGHV4-61_star_01_272: 1.0
4111
+ - !!python/object:python.hmmwriter.State
4112
+ emissions:
4113
+ probs:
4114
+ A: 0.03587185532259167
4115
+ C: 0.892384434032225
4116
+ G: 0.03587185532259167
4117
+ T: 0.03587185532259167
4118
+ track: nukes
4119
+ extras:
4120
+ ambiguous_char: N
4121
+ ambiguous_emission_prob: 0.25
4122
+ germline: C
4123
+ name: IGHV4-61_star_01_272
4124
+ transitions:
4125
+ IGHV4-61_star_01_273: 1.0
4126
+ - !!python/object:python.hmmwriter.State
4127
+ emissions:
4128
+ probs:
4129
+ A: 0.892384434032225
4130
+ C: 0.03587185532259167
4131
+ G: 0.03587185532259167
4132
+ T: 0.03587185532259167
4133
+ track: nukes
4134
+ extras:
4135
+ ambiguous_char: N
4136
+ ambiguous_emission_prob: 0.25
4137
+ germline: A
4138
+ name: IGHV4-61_star_01_273
4139
+ transitions:
4140
+ IGHV4-61_star_01_274: 1.0
4141
+ - !!python/object:python.hmmwriter.State
4142
+ emissions:
4143
+ probs:
4144
+ A: 0.03587185532259167
4145
+ C: 0.892384434032225
4146
+ G: 0.03587185532259167
4147
+ T: 0.03587185532259167
4148
+ track: nukes
4149
+ extras:
4150
+ ambiguous_char: N
4151
+ ambiguous_emission_prob: 0.25
4152
+ germline: C
4153
+ name: IGHV4-61_star_01_274
4154
+ transitions:
4155
+ IGHV4-61_star_01_275: 1.0
4156
+ - !!python/object:python.hmmwriter.State
4157
+ emissions:
4158
+ probs:
4159
+ A: 0.03587185532259167
4160
+ C: 0.03587185532259167
4161
+ G: 0.892384434032225
4162
+ T: 0.03587185532259167
4163
+ track: nukes
4164
+ extras:
4165
+ ambiguous_char: N
4166
+ ambiguous_emission_prob: 0.25
4167
+ germline: G
4168
+ name: IGHV4-61_star_01_275
4169
+ transitions:
4170
+ IGHV4-61_star_01_276: 1.0
4171
+ - !!python/object:python.hmmwriter.State
4172
+ emissions:
4173
+ probs:
4174
+ A: 0.03587185532259167
4175
+ C: 0.03587185532259167
4176
+ G: 0.892384434032225
4177
+ T: 0.03587185532259167
4178
+ track: nukes
4179
+ extras:
4180
+ ambiguous_char: N
4181
+ ambiguous_emission_prob: 0.25
4182
+ germline: G
4183
+ name: IGHV4-61_star_01_276
4184
+ transitions:
4185
+ IGHV4-61_star_01_277: 1.0
4186
+ - !!python/object:python.hmmwriter.State
4187
+ emissions:
4188
+ probs:
4189
+ A: 0.03587185532259167
4190
+ C: 0.892384434032225
4191
+ G: 0.03587185532259167
4192
+ T: 0.03587185532259167
4193
+ track: nukes
4194
+ extras:
4195
+ ambiguous_char: N
4196
+ ambiguous_emission_prob: 0.25
4197
+ germline: C
4198
+ name: IGHV4-61_star_01_277
4199
+ transitions:
4200
+ IGHV4-61_star_01_278: 1.0
4201
+ - !!python/object:python.hmmwriter.State
4202
+ emissions:
4203
+ probs:
4204
+ A: 0.03587185532259167
4205
+ C: 0.892384434032225
4206
+ G: 0.03587185532259167
4207
+ T: 0.03587185532259167
4208
+ track: nukes
4209
+ extras:
4210
+ ambiguous_char: N
4211
+ ambiguous_emission_prob: 0.25
4212
+ germline: C
4213
+ name: IGHV4-61_star_01_278
4214
+ transitions:
4215
+ IGHV4-61_star_01_279: 1.0
4216
+ - !!python/object:python.hmmwriter.State
4217
+ emissions:
4218
+ probs:
4219
+ A: 0.03587185532259167
4220
+ C: 0.03587185532259167
4221
+ G: 0.892384434032225
4222
+ T: 0.03587185532259167
4223
+ track: nukes
4224
+ extras:
4225
+ ambiguous_char: N
4226
+ ambiguous_emission_prob: 0.25
4227
+ germline: G
4228
+ name: IGHV4-61_star_01_279
4229
+ transitions:
4230
+ IGHV4-61_star_01_280: 1.0
4231
+ - !!python/object:python.hmmwriter.State
4232
+ emissions:
4233
+ probs:
4234
+ A: 0.03587185532259167
4235
+ C: 0.03587185532259167
4236
+ G: 0.03587185532259167
4237
+ T: 0.892384434032225
4238
+ track: nukes
4239
+ extras:
4240
+ ambiguous_char: N
4241
+ ambiguous_emission_prob: 0.25
4242
+ germline: T
4243
+ name: IGHV4-61_star_01_280
4244
+ transitions:
4245
+ IGHV4-61_star_01_281: 1.0
4246
+ - !!python/object:python.hmmwriter.State
4247
+ emissions:
4248
+ probs:
4249
+ A: 0.0375
4250
+ C: 0.0375
4251
+ G: 0.8875
4252
+ T: 0.0375
4253
+ track: nukes
4254
+ extras:
4255
+ ambiguous_char: N
4256
+ ambiguous_emission_prob: 0.25
4257
+ germline: G
4258
+ name: IGHV4-61_star_01_281
4259
+ transitions:
4260
+ IGHV4-61_star_01_282: 1.0
4261
+ - !!python/object:python.hmmwriter.State
4262
+ emissions:
4263
+ probs:
4264
+ A: 0.03587185532259167
4265
+ C: 0.03587185532259167
4266
+ G: 0.03587185532259167
4267
+ T: 0.892384434032225
4268
+ track: nukes
4269
+ extras:
4270
+ ambiguous_char: N
4271
+ ambiguous_emission_prob: 0.25
4272
+ germline: T
4273
+ name: IGHV4-61_star_01_282
4274
+ transitions:
4275
+ IGHV4-61_star_01_283: 1.0
4276
+ - !!python/object:python.hmmwriter.State
4277
+ emissions:
4278
+ probs:
4279
+ A: 0.892384434032225
4280
+ C: 0.03587185532259167
4281
+ G: 0.03587185532259167
4282
+ T: 0.03587185532259167
4283
+ track: nukes
4284
+ extras:
4285
+ ambiguous_char: N
4286
+ ambiguous_emission_prob: 0.25
4287
+ germline: A
4288
+ name: IGHV4-61_star_01_283
4289
+ transitions:
4290
+ IGHV4-61_star_01_284: 1.0
4291
+ - !!python/object:python.hmmwriter.State
4292
+ emissions:
4293
+ probs:
4294
+ A: 0.03587185532259167
4295
+ C: 0.03587185532259167
4296
+ G: 0.03587185532259167
4297
+ T: 0.892384434032225
4298
+ track: nukes
4299
+ extras:
4300
+ ambiguous_char: N
4301
+ ambiguous_emission_prob: 0.25
4302
+ germline: T
4303
+ name: IGHV4-61_star_01_284
4304
+ transitions:
4305
+ IGHV4-61_star_01_285: 1.0
4306
+ - !!python/object:python.hmmwriter.State
4307
+ emissions:
4308
+ probs:
4309
+ A: 0.03587185532259167
4310
+ C: 0.03587185532259167
4311
+ G: 0.03587185532259167
4312
+ T: 0.892384434032225
4313
+ track: nukes
4314
+ extras:
4315
+ ambiguous_char: N
4316
+ ambiguous_emission_prob: 0.25
4317
+ germline: T
4318
+ name: IGHV4-61_star_01_285
4319
+ transitions:
4320
+ IGHV4-61_star_01_286: 1.0
4321
+ - !!python/object:python.hmmwriter.State
4322
+ emissions:
4323
+ probs:
4324
+ A: 0.892384434032225
4325
+ C: 0.03587185532259167
4326
+ G: 0.03587185532259167
4327
+ T: 0.03587185532259167
4328
+ track: nukes
4329
+ extras:
4330
+ ambiguous_char: N
4331
+ ambiguous_emission_prob: 0.25
4332
+ germline: A
4333
+ name: IGHV4-61_star_01_286
4334
+ transitions:
4335
+ IGHV4-61_star_01_287: 1.0
4336
+ - !!python/object:python.hmmwriter.State
4337
+ emissions:
4338
+ probs:
4339
+ A: 0.03587185532259167
4340
+ C: 0.892384434032225
4341
+ G: 0.03587185532259167
4342
+ T: 0.03587185532259167
4343
+ track: nukes
4344
+ extras:
4345
+ ambiguous_char: N
4346
+ ambiguous_emission_prob: 0.25
4347
+ germline: C
4348
+ name: IGHV4-61_star_01_287
4349
+ transitions:
4350
+ IGHV4-61_star_01_288: 1.0
4351
+ - !!python/object:python.hmmwriter.State
4352
+ emissions:
4353
+ probs:
4354
+ A: 0.03587185532259167
4355
+ C: 0.03587185532259167
4356
+ G: 0.03587185532259167
4357
+ T: 0.892384434032225
4358
+ track: nukes
4359
+ extras:
4360
+ ambiguous_char: N
4361
+ ambiguous_emission_prob: 0.25
4362
+ germline: T
4363
+ name: IGHV4-61_star_01_288
4364
+ transitions:
4365
+ IGHV4-61_star_01_289: 1.0
4366
+ - !!python/object:python.hmmwriter.State
4367
+ emissions:
4368
+ probs:
4369
+ A: 0.03587185532259167
4370
+ C: 0.03587185532259167
4371
+ G: 0.892384434032225
4372
+ T: 0.03587185532259167
4373
+ track: nukes
4374
+ extras:
4375
+ ambiguous_char: N
4376
+ ambiguous_emission_prob: 0.25
4377
+ germline: G
4378
+ name: IGHV4-61_star_01_289
4379
+ transitions:
4380
+ IGHV4-61_star_01_290: 1.0
4381
+ - !!python/object:python.hmmwriter.State
4382
+ emissions:
4383
+ probs:
4384
+ A: 0.03591178752203759
4385
+ C: 0.03591178752203759
4386
+ G: 0.03591178752203759
4387
+ T: 0.8922646374338872
4388
+ track: nukes
4389
+ extras:
4390
+ ambiguous_char: N
4391
+ ambiguous_emission_prob: 0.25
4392
+ germline: T
4393
+ name: IGHV4-61_star_01_290
4394
+ transitions:
4395
+ IGHV4-61_star_01_291: 0.8888888888888888
4396
+ end: 0.1111111111111111
4397
+ - !!python/object:python.hmmwriter.State
4398
+ emissions:
4399
+ probs:
4400
+ A: 0.03595171972148349
4401
+ C: 0.03595171972148349
4402
+ G: 0.8921448408355495
4403
+ T: 0.03595171972148349
4404
+ track: nukes
4405
+ extras:
4406
+ ambiguous_char: N
4407
+ ambiguous_emission_prob: 0.25
4408
+ germline: G
4409
+ name: IGHV4-61_star_01_291
4410
+ transitions:
4411
+ IGHV4-61_star_01_292: 0.8888888888888888
4412
+ end: 0.1111111111111111
4413
+ - !!python/object:python.hmmwriter.State
4414
+ emissions:
4415
+ probs:
4416
+ A: 0.03599165192092941
4417
+ C: 0.8920250442372117
4418
+ G: 0.03599165192092941
4419
+ T: 0.03599165192092941
4420
+ track: nukes
4421
+ extras:
4422
+ ambiguous_char: N
4423
+ ambiguous_emission_prob: 0.25
4424
+ germline: C
4425
+ name: IGHV4-61_star_01_292
4426
+ transitions:
4427
+ IGHV4-61_star_01_293: 0.8888888888888888
4428
+ end: 0.1111111111111111
4429
+ - !!python/object:python.hmmwriter.State
4430
+ emissions:
4431
+ probs:
4432
+ A: 0.03603158412037532
4433
+ C: 0.03603158412037532
4434
+ G: 0.891905247638874
4435
+ T: 0.03603158412037532
4436
+ track: nukes
4437
+ extras:
4438
+ ambiguous_char: N
4439
+ ambiguous_emission_prob: 0.25
4440
+ germline: G
4441
+ name: IGHV4-61_star_01_293
4442
+ transitions:
4443
+ IGHV4-61_star_01_294: 0.8888888888888888
4444
+ end: 0.1111111111111111
4445
+ - !!python/object:python.hmmwriter.State
4446
+ emissions:
4447
+ probs:
4448
+ A: 0.8917854510405363
4449
+ C: 0.03607151631982124
4450
+ G: 0.03607151631982124
4451
+ T: 0.03607151631982124
4452
+ track: nukes
4453
+ extras:
4454
+ ambiguous_char: N
4455
+ ambiguous_emission_prob: 0.25
4456
+ germline: A
4457
+ name: IGHV4-61_star_01_294
4458
+ transitions:
4459
+ IGHV4-61_star_01_295: 0.8888888888888888
4460
+ end: 0.1111111111111111
4461
+ - !!python/object:python.hmmwriter.State
4462
+ emissions:
4463
+ probs:
4464
+ A: 0.036654163411736586
4465
+ C: 0.036654163411736586
4466
+ G: 0.8900375097647902
4467
+ T: 0.036654163411736586
4468
+ track: nukes
4469
+ extras:
4470
+ ambiguous_char: N
4471
+ ambiguous_emission_prob: 0.25
4472
+ germline: G
4473
+ name: IGHV4-61_star_01_295
4474
+ transitions:
4475
+ IGHV4-61_star_01_296: 0.8888888888888888
4476
+ end: 0.1111111111111111
4477
+ - !!python/object:python.hmmwriter.State
4478
+ emissions:
4479
+ probs:
4480
+ A: 0.8915458578438609
4481
+ C: 0.03615138071871306
4482
+ G: 0.03615138071871306
4483
+ T: 0.03615138071871306
4484
+ track: nukes
4485
+ extras:
4486
+ ambiguous_char: N
4487
+ ambiguous_emission_prob: 0.25
4488
+ germline: A
4489
+ name: IGHV4-61_star_01_296
4490
+ transitions:
4491
+ IGHV4-61_star_01_297: 0.8888888888888888
4492
+ end: 0.1111111111111111
4493
+ - !!python/object:python.hmmwriter.State
4494
+ emissions:
4495
+ probs:
4496
+ A: 0.036372217882315455
4497
+ C: 0.036372217882315455
4498
+ G: 0.8908833463530537
4499
+ T: 0.036372217882315455
4500
+ track: nukes
4501
+ extras:
4502
+ ambiguous_char: N
4503
+ ambiguous_emission_prob: 0.25
4504
+ germline: G
4505
+ name: IGHV4-61_star_01_297
4506
+ transitions:
4507
+ IGHV4-61_star_01_298: 0.8888888888888888
4508
+ end: 0.1111111111111111
4509
+ - !!python/object:python.hmmwriter.State
4510
+ emissions:
4511
+ probs:
4512
+ A: 0.8913062646471853
4513
+ C: 0.03623124511760488
4514
+ G: 0.03623124511760488
4515
+ T: 0.03623124511760488
4516
+ track: nukes
4517
+ extras:
4518
+ ambiguous_char: N
4519
+ ambiguous_emission_prob: 0.25
4520
+ germline: A
4521
+ name: IGHV4-61_star_01_298
4522
+ transitions:
4523
+ end: 1.0
4524
+ tracks:
4525
+ nukes:
4526
+ - A
4527
+ - C
4528
+ - G
4529
+ - T