partis-bcr 1.0.11__cp312-cp312-macosx_10_13_universal2.whl → 1.0.11.post1.dev7__cp312-cp312-macosx_10_13_universal2.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (644) hide show
  1. bin/partis +1 -1
  2. bin/partis-test.py +6 -0
  3. bin/partis.py +1 -1
  4. {partis_bcr-1.0.11.data → partis_bcr-1.0.11.post1.dev7.data}/scripts/partis-test.py +6 -0
  5. {partis_bcr-1.0.11.dist-info → partis_bcr-1.0.11.post1.dev7.dist-info}/METADATA +1 -1
  6. {partis_bcr-1.0.11.dist-info → partis_bcr-1.0.11.post1.dev7.dist-info}/RECORD +644 -126
  7. python/recombinator.py +2 -0
  8. python/treegenerator.py +1 -1
  9. test/new-results/annotate-new-simu-annotation-performance/hmm/boundaries/d_3p_del.csv +7 -0
  10. test/new-results/annotate-new-simu-annotation-performance/hmm/boundaries/d_5p_del.csv +8 -0
  11. test/new-results/annotate-new-simu-annotation-performance/hmm/boundaries/dj_insertion.csv +8 -0
  12. test/new-results/annotate-new-simu-annotation-performance/hmm/boundaries/fv_insertion.csv +10 -0
  13. test/new-results/annotate-new-simu-annotation-performance/hmm/boundaries/j_3p_del.csv +4 -0
  14. test/new-results/annotate-new-simu-annotation-performance/hmm/boundaries/j_5p_del.csv +8 -0
  15. test/new-results/annotate-new-simu-annotation-performance/hmm/boundaries/jf_insertion.csv +4 -0
  16. test/new-results/annotate-new-simu-annotation-performance/hmm/boundaries/shm_indel_length.csv +8 -0
  17. test/new-results/annotate-new-simu-annotation-performance/hmm/boundaries/v_3p_del.csv +4 -0
  18. test/new-results/annotate-new-simu-annotation-performance/hmm/boundaries/v_5p_del.csv +4 -0
  19. test/new-results/annotate-new-simu-annotation-performance/hmm/boundaries/vd_insertion.csv +8 -0
  20. test/new-results/annotate-new-simu-annotation-performance/hmm/gene-call/d_allele_fraction_correct_vs_per_gene_support.csv +28 -0
  21. test/new-results/annotate-new-simu-annotation-performance/hmm/gene-call/d_fraction_correct_vs_mute_freq.csv +28 -0
  22. test/new-results/annotate-new-simu-annotation-performance/hmm/gene-call/d_gene.csv +5 -0
  23. test/new-results/annotate-new-simu-annotation-performance/hmm/gene-call/j_allele_fraction_correct_vs_per_gene_support.csv +28 -0
  24. test/new-results/annotate-new-simu-annotation-performance/hmm/gene-call/j_fraction_correct_vs_mute_freq.csv +28 -0
  25. test/new-results/annotate-new-simu-annotation-performance/hmm/gene-call/j_gene.csv +5 -0
  26. test/new-results/annotate-new-simu-annotation-performance/hmm/gene-call/v_allele_fraction_correct_vs_per_gene_support.csv +28 -0
  27. test/new-results/annotate-new-simu-annotation-performance/hmm/gene-call/v_fraction_correct_vs_mute_freq.csv +28 -0
  28. test/new-results/annotate-new-simu-annotation-performance/hmm/gene-call/v_gene.csv +5 -0
  29. test/new-results/annotate-new-simu-annotation-performance/hmm/mutation/cdr3_hamming_to_true_naive.csv +7 -0
  30. test/new-results/annotate-new-simu-annotation-performance/hmm/mutation/cdr3_muted_bases.csv +7 -0
  31. test/new-results/annotate-new-simu-annotation-performance/hmm/mutation/d_hamming_to_true_naive.csv +5 -0
  32. test/new-results/annotate-new-simu-annotation-performance/hmm/mutation/d_muted_bases.csv +6 -0
  33. test/new-results/annotate-new-simu-annotation-performance/hmm/mutation/hamming_to_true_naive.csv +7 -0
  34. test/new-results/annotate-new-simu-annotation-performance/hmm/mutation/j_hamming_to_true_naive.csv +4 -0
  35. test/new-results/annotate-new-simu-annotation-performance/hmm/mutation/j_muted_bases.csv +5 -0
  36. test/new-results/annotate-new-simu-annotation-performance/hmm/mutation/mute_freqs.csv +28 -0
  37. test/new-results/annotate-new-simu-annotation-performance/hmm/mutation/muted_bases.csv +7 -0
  38. test/new-results/annotate-new-simu-annotation-performance/hmm/mutation/v_hamming_to_true_naive.csv +4 -0
  39. test/new-results/annotate-new-simu-annotation-performance/hmm/mutation/v_muted_bases.csv +4 -0
  40. test/new-results/annotate-new-simu-annotation-performance/sw/boundaries/d_3p_del.csv +8 -0
  41. test/new-results/annotate-new-simu-annotation-performance/sw/boundaries/d_5p_del.csv +6 -0
  42. test/new-results/annotate-new-simu-annotation-performance/sw/boundaries/dj_insertion.csv +7 -0
  43. test/new-results/annotate-new-simu-annotation-performance/sw/boundaries/fv_insertion.csv +4 -0
  44. test/new-results/annotate-new-simu-annotation-performance/sw/boundaries/j_3p_del.csv +4 -0
  45. test/new-results/annotate-new-simu-annotation-performance/sw/boundaries/j_5p_del.csv +9 -0
  46. test/new-results/annotate-new-simu-annotation-performance/sw/boundaries/jf_insertion.csv +4 -0
  47. test/new-results/annotate-new-simu-annotation-performance/sw/boundaries/shm_indel_length.csv +8 -0
  48. test/new-results/annotate-new-simu-annotation-performance/sw/boundaries/v_3p_del.csv +4 -0
  49. test/new-results/annotate-new-simu-annotation-performance/sw/boundaries/v_5p_del.csv +4 -0
  50. test/new-results/annotate-new-simu-annotation-performance/sw/boundaries/vd_insertion.csv +6 -0
  51. test/new-results/annotate-new-simu-annotation-performance/sw/gene-call/d_fraction_correct_vs_mute_freq.csv +28 -0
  52. test/new-results/annotate-new-simu-annotation-performance/sw/gene-call/d_gene.csv +5 -0
  53. test/new-results/annotate-new-simu-annotation-performance/sw/gene-call/j_fraction_correct_vs_mute_freq.csv +28 -0
  54. test/new-results/annotate-new-simu-annotation-performance/sw/gene-call/j_gene.csv +5 -0
  55. test/new-results/annotate-new-simu-annotation-performance/sw/gene-call/v_fraction_correct_vs_mute_freq.csv +28 -0
  56. test/new-results/annotate-new-simu-annotation-performance/sw/gene-call/v_gene.csv +5 -0
  57. test/new-results/annotate-new-simu-annotation-performance/sw/mutation/cdr3_hamming_to_true_naive.csv +6 -0
  58. test/new-results/annotate-new-simu-annotation-performance/sw/mutation/cdr3_muted_bases.csv +7 -0
  59. test/new-results/annotate-new-simu-annotation-performance/sw/mutation/d_hamming_to_true_naive.csv +5 -0
  60. test/new-results/annotate-new-simu-annotation-performance/sw/mutation/d_muted_bases.csv +5 -0
  61. test/new-results/annotate-new-simu-annotation-performance/sw/mutation/hamming_to_true_naive.csv +6 -0
  62. test/new-results/annotate-new-simu-annotation-performance/sw/mutation/j_hamming_to_true_naive.csv +4 -0
  63. test/new-results/annotate-new-simu-annotation-performance/sw/mutation/j_muted_bases.csv +6 -0
  64. test/new-results/annotate-new-simu-annotation-performance/sw/mutation/mute_freqs.csv +28 -0
  65. test/new-results/annotate-new-simu-annotation-performance/sw/mutation/muted_bases.csv +7 -0
  66. test/new-results/annotate-new-simu-annotation-performance/sw/mutation/v_hamming_to_true_naive.csv +4 -0
  67. test/new-results/annotate-new-simu-annotation-performance/sw/mutation/v_muted_bases.csv +4 -0
  68. test/new-results/annotate-new-simu.yaml +1 -0
  69. test/new-results/cache-new-partition.csv +59 -0
  70. test/new-results/get-selection-metrics-new-simu.yaml +1 -0
  71. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/boundaries/d_3p_del.csv +7 -0
  72. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/boundaries/d_5p_del.csv +6 -0
  73. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/boundaries/dj_insertion.csv +8 -0
  74. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/boundaries/fv_insertion.csv +10 -0
  75. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/boundaries/j_3p_del.csv +4 -0
  76. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/boundaries/j_5p_del.csv +8 -0
  77. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/boundaries/jf_insertion.csv +4 -0
  78. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/boundaries/shm_indel_length.csv +8 -0
  79. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/boundaries/v_3p_del.csv +4 -0
  80. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/boundaries/v_5p_del.csv +4 -0
  81. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/boundaries/vd_insertion.csv +6 -0
  82. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/gene-call/d_allele_fraction_correct_vs_per_gene_support.csv +28 -0
  83. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/gene-call/d_fraction_correct_vs_mute_freq.csv +28 -0
  84. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/gene-call/d_gene.csv +5 -0
  85. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/gene-call/j_allele_fraction_correct_vs_per_gene_support.csv +28 -0
  86. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/gene-call/j_fraction_correct_vs_mute_freq.csv +28 -0
  87. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/gene-call/j_gene.csv +5 -0
  88. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/gene-call/v_allele_fraction_correct_vs_per_gene_support.csv +28 -0
  89. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/gene-call/v_fraction_correct_vs_mute_freq.csv +28 -0
  90. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/gene-call/v_gene.csv +5 -0
  91. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/mutation/cdr3_hamming_to_true_naive.csv +5 -0
  92. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/mutation/cdr3_muted_bases.csv +5 -0
  93. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/mutation/d_hamming_to_true_naive.csv +4 -0
  94. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/mutation/d_muted_bases.csv +4 -0
  95. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/mutation/hamming_to_true_naive.csv +5 -0
  96. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/mutation/j_hamming_to_true_naive.csv +4 -0
  97. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/mutation/j_muted_bases.csv +5 -0
  98. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/mutation/mute_freqs.csv +28 -0
  99. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/mutation/muted_bases.csv +5 -0
  100. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/mutation/v_hamming_to_true_naive.csv +4 -0
  101. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/mutation/v_muted_bases.csv +4 -0
  102. test/new-results/multi-annotate-new-simu-annotation-performance/sw/boundaries/d_3p_del.csv +8 -0
  103. test/new-results/multi-annotate-new-simu-annotation-performance/sw/boundaries/d_5p_del.csv +6 -0
  104. test/new-results/multi-annotate-new-simu-annotation-performance/sw/boundaries/dj_insertion.csv +7 -0
  105. test/new-results/multi-annotate-new-simu-annotation-performance/sw/boundaries/fv_insertion.csv +4 -0
  106. test/new-results/multi-annotate-new-simu-annotation-performance/sw/boundaries/j_3p_del.csv +4 -0
  107. test/new-results/multi-annotate-new-simu-annotation-performance/sw/boundaries/j_5p_del.csv +9 -0
  108. test/new-results/multi-annotate-new-simu-annotation-performance/sw/boundaries/jf_insertion.csv +4 -0
  109. test/new-results/multi-annotate-new-simu-annotation-performance/sw/boundaries/shm_indel_length.csv +8 -0
  110. test/new-results/multi-annotate-new-simu-annotation-performance/sw/boundaries/v_3p_del.csv +4 -0
  111. test/new-results/multi-annotate-new-simu-annotation-performance/sw/boundaries/v_5p_del.csv +4 -0
  112. test/new-results/multi-annotate-new-simu-annotation-performance/sw/boundaries/vd_insertion.csv +6 -0
  113. test/new-results/multi-annotate-new-simu-annotation-performance/sw/gene-call/d_fraction_correct_vs_mute_freq.csv +28 -0
  114. test/new-results/multi-annotate-new-simu-annotation-performance/sw/gene-call/d_gene.csv +5 -0
  115. test/new-results/multi-annotate-new-simu-annotation-performance/sw/gene-call/j_fraction_correct_vs_mute_freq.csv +28 -0
  116. test/new-results/multi-annotate-new-simu-annotation-performance/sw/gene-call/j_gene.csv +5 -0
  117. test/new-results/multi-annotate-new-simu-annotation-performance/sw/gene-call/v_fraction_correct_vs_mute_freq.csv +28 -0
  118. test/new-results/multi-annotate-new-simu-annotation-performance/sw/gene-call/v_gene.csv +5 -0
  119. test/new-results/multi-annotate-new-simu-annotation-performance/sw/mutation/cdr3_hamming_to_true_naive.csv +6 -0
  120. test/new-results/multi-annotate-new-simu-annotation-performance/sw/mutation/cdr3_muted_bases.csv +7 -0
  121. test/new-results/multi-annotate-new-simu-annotation-performance/sw/mutation/d_hamming_to_true_naive.csv +5 -0
  122. test/new-results/multi-annotate-new-simu-annotation-performance/sw/mutation/d_muted_bases.csv +5 -0
  123. test/new-results/multi-annotate-new-simu-annotation-performance/sw/mutation/hamming_to_true_naive.csv +6 -0
  124. test/new-results/multi-annotate-new-simu-annotation-performance/sw/mutation/j_hamming_to_true_naive.csv +4 -0
  125. test/new-results/multi-annotate-new-simu-annotation-performance/sw/mutation/j_muted_bases.csv +6 -0
  126. test/new-results/multi-annotate-new-simu-annotation-performance/sw/mutation/mute_freqs.csv +28 -0
  127. test/new-results/multi-annotate-new-simu-annotation-performance/sw/mutation/muted_bases.csv +7 -0
  128. test/new-results/multi-annotate-new-simu-annotation-performance/sw/mutation/v_hamming_to_true_naive.csv +4 -0
  129. test/new-results/multi-annotate-new-simu-annotation-performance/sw/mutation/v_muted_bases.csv +4 -0
  130. test/new-results/multi-annotate-new-simu.yaml +1 -0
  131. test/new-results/partition-new-simu/fasttree/iclust-0/fasttree.out +1 -0
  132. test/new-results/partition-new-simu/fasttree/iclust-0/input-seqs.fa +24 -0
  133. test/new-results/partition-new-simu/fasttree/iclust-0/log +23 -0
  134. test/new-results/partition-new-simu/fasttree/iclust-1/fasttree.out +1 -0
  135. test/new-results/partition-new-simu/fasttree/iclust-1/input-seqs.fa +16 -0
  136. test/new-results/partition-new-simu/fasttree/iclust-1/log +23 -0
  137. test/new-results/partition-new-simu/fasttree/iclust-2/fasttree.out +1 -0
  138. test/new-results/partition-new-simu/fasttree/iclust-2/input-seqs.fa +16 -0
  139. test/new-results/partition-new-simu/fasttree/iclust-2/log +22 -0
  140. test/new-results/partition-new-simu-annotation-performance/hmm/boundaries/d_3p_del.csv +7 -0
  141. test/new-results/partition-new-simu-annotation-performance/hmm/boundaries/d_5p_del.csv +6 -0
  142. test/new-results/partition-new-simu-annotation-performance/hmm/boundaries/dj_insertion.csv +8 -0
  143. test/new-results/partition-new-simu-annotation-performance/hmm/boundaries/fv_insertion.csv +10 -0
  144. test/new-results/partition-new-simu-annotation-performance/hmm/boundaries/j_3p_del.csv +4 -0
  145. test/new-results/partition-new-simu-annotation-performance/hmm/boundaries/j_5p_del.csv +8 -0
  146. test/new-results/partition-new-simu-annotation-performance/hmm/boundaries/jf_insertion.csv +4 -0
  147. test/new-results/partition-new-simu-annotation-performance/hmm/boundaries/shm_indel_length.csv +8 -0
  148. test/new-results/partition-new-simu-annotation-performance/hmm/boundaries/v_3p_del.csv +4 -0
  149. test/new-results/partition-new-simu-annotation-performance/hmm/boundaries/v_5p_del.csv +4 -0
  150. test/new-results/partition-new-simu-annotation-performance/hmm/boundaries/vd_insertion.csv +6 -0
  151. test/new-results/partition-new-simu-annotation-performance/hmm/gene-call/d_allele_fraction_correct_vs_per_gene_support.csv +28 -0
  152. test/new-results/partition-new-simu-annotation-performance/hmm/gene-call/d_fraction_correct_vs_mute_freq.csv +28 -0
  153. test/new-results/partition-new-simu-annotation-performance/hmm/gene-call/d_gene.csv +5 -0
  154. test/new-results/partition-new-simu-annotation-performance/hmm/gene-call/j_allele_fraction_correct_vs_per_gene_support.csv +28 -0
  155. test/new-results/partition-new-simu-annotation-performance/hmm/gene-call/j_fraction_correct_vs_mute_freq.csv +28 -0
  156. test/new-results/partition-new-simu-annotation-performance/hmm/gene-call/j_gene.csv +5 -0
  157. test/new-results/partition-new-simu-annotation-performance/hmm/gene-call/v_allele_fraction_correct_vs_per_gene_support.csv +28 -0
  158. test/new-results/partition-new-simu-annotation-performance/hmm/gene-call/v_fraction_correct_vs_mute_freq.csv +28 -0
  159. test/new-results/partition-new-simu-annotation-performance/hmm/gene-call/v_gene.csv +5 -0
  160. test/new-results/partition-new-simu-annotation-performance/hmm/mutation/cdr3_hamming_to_true_naive.csv +5 -0
  161. test/new-results/partition-new-simu-annotation-performance/hmm/mutation/cdr3_muted_bases.csv +5 -0
  162. test/new-results/partition-new-simu-annotation-performance/hmm/mutation/d_hamming_to_true_naive.csv +4 -0
  163. test/new-results/partition-new-simu-annotation-performance/hmm/mutation/d_muted_bases.csv +4 -0
  164. test/new-results/partition-new-simu-annotation-performance/hmm/mutation/hamming_to_true_naive.csv +5 -0
  165. test/new-results/partition-new-simu-annotation-performance/hmm/mutation/j_hamming_to_true_naive.csv +4 -0
  166. test/new-results/partition-new-simu-annotation-performance/hmm/mutation/j_muted_bases.csv +5 -0
  167. test/new-results/partition-new-simu-annotation-performance/hmm/mutation/mute_freqs.csv +28 -0
  168. test/new-results/partition-new-simu-annotation-performance/hmm/mutation/muted_bases.csv +5 -0
  169. test/new-results/partition-new-simu-annotation-performance/hmm/mutation/v_hamming_to_true_naive.csv +4 -0
  170. test/new-results/partition-new-simu-annotation-performance/hmm/mutation/v_muted_bases.csv +4 -0
  171. test/new-results/partition-new-simu-annotation-performance/sw/boundaries/d_3p_del.csv +8 -0
  172. test/new-results/partition-new-simu-annotation-performance/sw/boundaries/d_5p_del.csv +6 -0
  173. test/new-results/partition-new-simu-annotation-performance/sw/boundaries/dj_insertion.csv +7 -0
  174. test/new-results/partition-new-simu-annotation-performance/sw/boundaries/fv_insertion.csv +4 -0
  175. test/new-results/partition-new-simu-annotation-performance/sw/boundaries/j_3p_del.csv +4 -0
  176. test/new-results/partition-new-simu-annotation-performance/sw/boundaries/j_5p_del.csv +9 -0
  177. test/new-results/partition-new-simu-annotation-performance/sw/boundaries/jf_insertion.csv +4 -0
  178. test/new-results/partition-new-simu-annotation-performance/sw/boundaries/shm_indel_length.csv +8 -0
  179. test/new-results/partition-new-simu-annotation-performance/sw/boundaries/v_3p_del.csv +4 -0
  180. test/new-results/partition-new-simu-annotation-performance/sw/boundaries/v_5p_del.csv +4 -0
  181. test/new-results/partition-new-simu-annotation-performance/sw/boundaries/vd_insertion.csv +6 -0
  182. test/new-results/partition-new-simu-annotation-performance/sw/gene-call/d_fraction_correct_vs_mute_freq.csv +28 -0
  183. test/new-results/partition-new-simu-annotation-performance/sw/gene-call/d_gene.csv +5 -0
  184. test/new-results/partition-new-simu-annotation-performance/sw/gene-call/j_fraction_correct_vs_mute_freq.csv +28 -0
  185. test/new-results/partition-new-simu-annotation-performance/sw/gene-call/j_gene.csv +5 -0
  186. test/new-results/partition-new-simu-annotation-performance/sw/gene-call/v_fraction_correct_vs_mute_freq.csv +28 -0
  187. test/new-results/partition-new-simu-annotation-performance/sw/gene-call/v_gene.csv +5 -0
  188. test/new-results/partition-new-simu-annotation-performance/sw/mutation/cdr3_hamming_to_true_naive.csv +6 -0
  189. test/new-results/partition-new-simu-annotation-performance/sw/mutation/cdr3_muted_bases.csv +7 -0
  190. test/new-results/partition-new-simu-annotation-performance/sw/mutation/d_hamming_to_true_naive.csv +5 -0
  191. test/new-results/partition-new-simu-annotation-performance/sw/mutation/d_muted_bases.csv +5 -0
  192. test/new-results/partition-new-simu-annotation-performance/sw/mutation/hamming_to_true_naive.csv +6 -0
  193. test/new-results/partition-new-simu-annotation-performance/sw/mutation/j_hamming_to_true_naive.csv +4 -0
  194. test/new-results/partition-new-simu-annotation-performance/sw/mutation/j_muted_bases.csv +6 -0
  195. test/new-results/partition-new-simu-annotation-performance/sw/mutation/mute_freqs.csv +28 -0
  196. test/new-results/partition-new-simu-annotation-performance/sw/mutation/muted_bases.csv +7 -0
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  632. test/trees.nwk +100 -0
  633. {partis_bcr-1.0.11.data → partis_bcr-1.0.11.post1.dev7.data}/scripts/cf-alleles.py +0 -0
  634. {partis_bcr-1.0.11.data → partis_bcr-1.0.11.post1.dev7.data}/scripts/cf-germlines.py +0 -0
  635. {partis_bcr-1.0.11.data → partis_bcr-1.0.11.post1.dev7.data}/scripts/compare-plotdirs.py +0 -0
  636. {partis_bcr-1.0.11.data → partis_bcr-1.0.11.post1.dev7.data}/scripts/extract-pairing-info.py +0 -0
  637. {partis_bcr-1.0.11.data → partis_bcr-1.0.11.post1.dev7.data}/scripts/gctree-run.py +0 -0
  638. {partis_bcr-1.0.11.data → partis_bcr-1.0.11.post1.dev7.data}/scripts/get-naive-probabilities.py +0 -0
  639. {partis_bcr-1.0.11.data → partis_bcr-1.0.11.post1.dev7.data}/scripts/parse-output.py +0 -0
  640. {partis_bcr-1.0.11.data → partis_bcr-1.0.11.post1.dev7.data}/scripts/split-loci.py +0 -0
  641. {partis_bcr-1.0.11.dist-info → partis_bcr-1.0.11.post1.dev7.dist-info}/WHEEL +0 -0
  642. {partis_bcr-1.0.11.dist-info → partis_bcr-1.0.11.post1.dev7.dist-info}/entry_points.txt +0 -0
  643. {partis_bcr-1.0.11.dist-info → partis_bcr-1.0.11.post1.dev7.dist-info}/licenses/COPYING +0 -0
  644. {partis_bcr-1.0.11.dist-info → partis_bcr-1.0.11.post1.dev7.dist-info}/top_level.txt +0 -0
{partis_bcr-1.0.11.dist-info → partis_bcr-1.0.11.post1.dev7.dist-info}/RECORD RENAMED
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900
+ test/new-results/test/parameters/simu/sw/hmms/IGHD1-20_star_01.yaml,sha256=1XGNilMTcFUqSQQLrimySjNzAwgkUltAVsekx-lmfcc,12832
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+ test/new-results/test/parameters/simu/sw/hmms/IGHD3-22_star_01.yaml,sha256=bdUBvpHuabehRe9mWab1Dmf3sDq-WfQ9r3F3FIQUQ5I,21291
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+ test/new-results/test/parameters/simu/sw/hmms/IGHD6-13_star_01.yaml,sha256=-5yIjNtkfO0en3nN5KPaN_cfIUFL_S-kW1vul0aXdfk,15352
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+ test/new-results/test/parameters/simu/sw/hmms/IGHD6-19_star_01.yaml,sha256=9dWtRp86__fbvFZC-Pkl7KkfCbeKOc66Qr0cMR2xbPo,15365
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+ test/new-results/test/parameters/simu/sw/hmms/IGHJ1_star_01.yaml,sha256=GyaCoyKZqdj6Y3NxeQMDxTfecjiWSRiUFCrobq2oHgQ,24169
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+ test/new-results/test/parameters/simu/sw/hmms/IGHJ4_star_02.yaml,sha256=daEZ8sBg1QDnXNu2pUkl-6rjYW1NweOHhEENRCYoXkk,22405
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+ test/new-results/test/parameters/simu/sw/hmms/IGHJ6_star_02.yaml,sha256=at7AGRfVop9R4T6p2CThtweiunwhmkSjWOv9rdFicHw,30730
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+ test/new-results/test/parameters/simu/sw/hmms/IGHV1-18_star_01.yaml,sha256=3R9t3lHMQYEnALWi4ZEO52aI3ivXsaVr2RWkk_PH4VE,105925
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+ test/new-results/test/parameters/simu/sw/hmms/IGHV3-23_star_01.yaml,sha256=q2Lf3t0fO7F91q0Cba76HOz149bwMAXjQ2xuT0yMIuI,105405
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+ test/new-results/test/parameters/simu/sw/hmms/IGHV3-66_star_02.yaml,sha256=VwiYswrRUiBcFp9Hob3wc2g-ClRWyDOONpgBTisGdL4,99833
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+ test/new-results/test/parameters/simu/sw/hmms/IGHV3-7_star_05.yaml,sha256=mpZ6qNLzzP5hKEGiGFC0scRxRkjcSK_-_V9ybeL6OCM,103495
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+ test/new-results/test/parameters/simu/sw/hmms/IGHV4-4_star_09.yaml,sha256=atoeu1qDs6F-p86b2AxUCdkml2ISkx66CoOckHeAXog,103232
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+ test/new-results/test/parameters/simu/sw/hmms/IGHV4-61_star_01.yaml,sha256=J6o77081GzjZcgMR8hN6kvPzRSLUYOMklXbpoDTcVDw,101718
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+ test/new-results/test/parameters/simu/sw/hmms/IGHV5-51_star_01.yaml,sha256=Yffn4kuvSBsjKMpVjkbGkoMaUV2gxenMB9UhnwAMeW0,104913
915
+ test/new-results/test/parameters/simu/sw/mute-freqs/IGHD1-20_star_01.csv,sha256=Vw0UbtEmrlYjjgBKCMERteu-WtDIQkO2EihZfdqkKlU,1179
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+ test/new-results/test/parameters/simu/sw/mute-freqs/IGHD3-16_star_02.csv,sha256=aFOFT0TCkp7NJgB5FWblIRqgrpLVwTL4zA8wRZ3fE4M,3935
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+ test/new-results/test/parameters/simu/sw/mute-freqs/IGHD3-22_star_01.csv,sha256=qSsicAv6b3ZwyJqXfbW74akt7g8JPk8_ktlUUSptoKs,4263
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+ test/new-results/test/parameters/simu/sw/mute-freqs/IGHD6-13_star_01.csv,sha256=lbHygnE7ETSq_w7xq0VWNHO2BshyGj2_j67GXTFgW78,2956
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+ test/new-results/test/parameters/simu/sw/mute-freqs/IGHD6-19_star_01.csv,sha256=aYBYSGRcfWJeJE2SgyYpdb4JITAj_Nj47qtLBzBiO64,2617
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+ test/new-results/test/parameters/simu/sw/mute-freqs/IGHJ1_star_01.csv,sha256=Qqrvy8SpNNMwucEG8ZpDBMpPOznFTDS38FbC3LpfGak,6696
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+ test/new-results/test/parameters/simu/sw/mute-freqs/IGHJ4_star_02.csv,sha256=vFbWPWYhY1tfDlhXYqujIDBECowy7XwwvNcUiOoKZFQ,6746
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- test/new-results/test/parameters/simu/sw/mute-freqs/IGHV3-66_star_02.csv,sha256=L2u0w3IWDJKOshqCT6St6SxKKPAjq6JbY0JDH9uBMls,39711
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+ test/new-results/test/parameters/simu/sw/mute-freqs/IGHV1-18_star_01.csv,sha256=qWQvD-ltkpm5pNBo6oy9HCx45zn6MPuwV6F0EhKn_CQ,39176
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+ test/new-results/test/parameters/simu/sw/mute-freqs/IGHV3-23_star_01.csv,sha256=iggcygo5zN-Wevze_vahlPZKGt7Kn2RTJ6NIMMIGq2Q,39100
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+ test/new-results/test/parameters/simu/sw/mute-freqs/IGHV3-66_star_02.csv,sha256=NuxSOkAlYSTLH1pYiglewkxG17C6AudeiodkogUY03o,41148
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+ test/new-results/test/parameters/simu/sw/mute-freqs/IGHV4-4_star_09.csv,sha256=_2s4lvITWRfamkX32TTOzhCd_tCF7qOnY1LJ5y1jAx0,38320
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+ test/new-results/test/parameters/simu/sw/mute-freqs/IGHV4-61_star_01.csv,sha256=kONUU7EHhpBiHqSGDoWdTA5zBjaMYZDo385OHxsD5_w,40111
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+ test/new-results/test/parameters/simu/sw/mute-freqs/IGHV5-51_star_01.csv,sha256=0BOZU7pYns4oh593bGeq2V-qPaLAdH33RodQUnwDmlo,38980
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+ test/new-results/test/parameters/simu/true/all-mean-mute-freqs.csv,sha256=0pdxyoFEXH3_eow_rK7arPkKCuj5gluaUgPnlOzJ0v4,771
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+ test/new-results/test/parameters/simu/true/all-mean-n-muted.csv,sha256=q4lxyZKrQ9rXEttFW98beQBkstUDvzZhNlSwTihKwiU,2420
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+ test/new-results/test/parameters/simu/true/all-probs.csv,sha256=hY2LPP1S13b1EqphO0z4SSGDyERj6JCdMm3hVcKwTGM,679
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+ test/new-results/test/parameters/simu/true/cluster_size.csv,sha256=1aSbRzyfEI9p3sFsY0Siwc-xevi6Px9jMGpAs4Aedrc,50
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+ test/new-results/test/parameters/simu/true/d-mean-mute-freqs.csv,sha256=UahkZJ9Qzdq4AgtaJek2Ix4zRc4fkZiqfIdXX9SEJ60,839
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+ test/new-results/test/parameters/simu/true/d-mean-n-muted.csv,sha256=3Lkb-ACXnUu1jn1PYLsdPA32xR4wC-Q6MVXJTszM9lg,239
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+ test/new-results/test/parameters/simu/true/d_gene-d_3p_del-probs.csv,sha256=mpMljUR2axM8L6ixhCMSOBQvEHip6gsmvhuca9jhzgU,158
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+ test/new-results/test/parameters/simu/true/d_gene-d_5p_del-probs.csv,sha256=MMmhzJV5yXsGk_rt8z_HRSa4Nhzn3vV-s8GEGEp8sso,175
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+ test/new-results/test/parameters/simu/true/d_gene-probs.csv,sha256=UJ8DnHJm7hFYc0e-7OO9zBRYjIN4yeJ57SeX2IAcms8,103
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+ test/new-results/test/parameters/simu/true/d_gene-vd_insertion-probs.csv,sha256=pTSQcrIo99xjdS9HJSqoRZ2PQO6acaFEnkMXROBk_C0,181
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+ test/new-results/test/parameters/simu/true/dj_insertion_content.csv,sha256=WHqH0mjXBmtPUJhbgqHDuYIb35-WWeM33CqQPaQPKfY,51
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+ test/new-results/test/parameters/simu/true/fv_insertion-probs.csv,sha256=y05g9xpId6ehhoFDZ1yoEljOp1OoqKDrjy7UlVuv7PI,26
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+ test/new-results/test/parameters/simu/true/j-mean-mute-freqs.csv,sha256=kMbmokeNapXdhTxTHGMYi3qTzvKFWq-GbtWzaQWdEl0,770
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+ test/new-results/test/parameters/simu/true/j-mean-n-muted.csv,sha256=f4AVgobW2wOfrnZPSdh15Iy-BnN1iI9J4nP3OQKCBrY,415
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+ test/new-results/test/parameters/simu/true/j_gene-dj_insertion-probs.csv,sha256=nMU9eRj_43tq1ogwBJGcQeqJDTGUSEnH8vI1I9HjF3M,112
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+ test/new-results/test/parameters/simu/true/j_gene-j_3p_del-probs.csv,sha256=IP0jTfQI6B-CK3zClQGvWMfhqm-zc3aU8cETGuQopmI,65
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+ test/new-results/test/parameters/simu/true/j_gene-j_5p_del-probs.csv,sha256=XxREd24V4MAqn0zhwJEI_lmyeChgbwUYQYG9xsaPiF8,137
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+ test/new-results/test/parameters/simu/true/j_gene-probs.csv,sha256=qg5ZdxeKFfiZ9piaIEtJlpGZC0O7BHbyuKzCQhNV9a8,50
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+ test/new-results/test/parameters/simu/true/jf_insertion-probs.csv,sha256=OhShrBTyasDthMLCsDxkrMj3pHoAkzVTPVxoVc39puQ,26
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+ test/new-results/test/parameters/simu/true/seq_content.csv,sha256=LUX5kr1RY-F5XQhnK7ZndM8cdnYaz_R66xTUnwAkBlE,51
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+ test/new-results/test/parameters/simu/true/v-mean-mute-freqs.csv,sha256=G0ooefygl__ryhmyyRgDb3c2NREYOkC7fWVHbCezbn4,771
951
+ test/new-results/test/parameters/simu/true/v-mean-n-muted.csv,sha256=2K3dN6XnTGHc1n6QWaVI4J_wfTON-pKMH9l3qJyjse4,1968
952
+ test/new-results/test/parameters/simu/true/v_gene-probs.csv,sha256=NXBVg94oMfmIpdVh68B5UKgXELNbFc0OelrYpR6S6ZQ,117
953
+ test/new-results/test/parameters/simu/true/v_gene-v_3p_del-probs.csv,sha256=zCIRZ1SlvG19X6MGS7wYfzJlbaENfrnWRDgxgq-VnWk,157
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+ test/new-results/test/parameters/simu/true/v_gene-v_5p_del-probs.csv,sha256=YuRwBSDaskKmoYMCu8ZXAEW7LNXfvHmHS7lhPk5JilI,140
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+ test/new-results/test/parameters/simu/true/vd_insertion_content.csv,sha256=eS1NA66q7A8orZZer1rRDySSX3bNcHLxX3mlKV9wF0o,51
956
+ test/new-results/test/parameters/simu/true/germline-sets/igh/extras.csv,sha256=36Sev7hCZRR-lcdnr9p4M--oDkqr_p2j0vGangs-7FA,246
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+ test/new-results/test/parameters/simu/true/germline-sets/igh/ighd.fasta,sha256=KEJLTTD0_9WPqceiQAB2_LJXKwUshvC7LlHZrs1KPbI,228
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+ test/new-results/test/parameters/simu/true/germline-sets/igh/ighj.fasta,sha256=4UWQNkDWhOFeKG36_460WRbmJ_5BKsDi7ibAa1uhATI,196
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+ test/new-results/test/parameters/simu/true/germline-sets/igh/ighv.fasta,sha256=xtHU6LKeyp16GSsxM749mqAy4hfAs-eimWjvss8ogy0,2165
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+ test/new-results/test/parameters/simu/true/mute-freqs/IGHD1-20_star_01.csv,sha256=ANvC4GAbFcAqIW7f0DQcWbq2qZK_ZvlIAIiRiGr0W9E,1048
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+ test/new-results/test/parameters/simu/true/mute-freqs/IGHD3-16_star_02.csv,sha256=aFOFT0TCkp7NJgB5FWblIRqgrpLVwTL4zA8wRZ3fE4M,3935
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+ test/new-results/test/parameters/simu/true/mute-freqs/IGHD3-22_star_01.csv,sha256=qSsicAv6b3ZwyJqXfbW74akt7g8JPk8_ktlUUSptoKs,4263
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+ test/new-results/test/parameters/simu/true/mute-freqs/IGHD6-13_star_01.csv,sha256=qQ-ZaUHWJXyxz5AeyAU6oJg6R2X1dGiiA8HYkAGppV8,3090
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+ test/new-results/test/parameters/simu/true/mute-freqs/IGHD6-19_star_01.csv,sha256=TODqY-bHf6qXTM8qGMehBrGTtNBxWSCRkCncFyzUdck,2879
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+ test/new-results/test/parameters/simu/true/mute-freqs/IGHD6-6_star_01.csv,sha256=Si4QG-npAa1ad2NuyDQwOCdb3Y-YVQTMdsqE4UBrIJI,1700
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+ test/new-results/test/parameters/simu/true/mute-freqs/IGHJ1_star_01.csv,sha256=uLdRseO-LvPJJAYj4aBNyDJuRWLJew9g4UAvrx4uJwY,6655
967
+ test/new-results/test/parameters/simu/true/mute-freqs/IGHJ4_star_02.csv,sha256=KfLR2MD8pOUO9mN1cTFDHex0VEsOad8PPg1d_XVE8F8,6116
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+ test/new-results/test/parameters/simu/true/mute-freqs/IGHJ6_star_02.csv,sha256=-nvF_Re3o29DhELGSHCanf8UF4894aGmLvaDahgjIHo,6238
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+ test/new-results/test/parameters/simu/true/mute-freqs/IGHV1-18_star_01.csv,sha256=qWQvD-ltkpm5pNBo6oy9HCx45zn6MPuwV6F0EhKn_CQ,39176
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+ test/new-results/test/parameters/simu/true/mute-freqs/IGHV3-23_star_01.csv,sha256=iggcygo5zN-Wevze_vahlPZKGt7Kn2RTJ6NIMMIGq2Q,39100
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+ test/new-results/test/parameters/simu/true/mute-freqs/IGHV3-66_star_02.csv,sha256=NuxSOkAlYSTLH1pYiglewkxG17C6AudeiodkogUY03o,41148
972
+ test/new-results/test/parameters/simu/true/mute-freqs/IGHV3-7_star_05.csv,sha256=Ve6Y1IAOpf0ls0fwDtz7KMoMxrGtH2RadkomESpABR8,39704
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+ test/new-results/test/parameters/simu/true/mute-freqs/IGHV4-4_star_09.csv,sha256=_2s4lvITWRfamkX32TTOzhCd_tCF7qOnY1LJ5y1jAx0,38320
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+ test/new-results/test/parameters/simu/true/mute-freqs/IGHV4-61_star_01.csv,sha256=kONUU7EHhpBiHqSGDoWdTA5zBjaMYZDo385OHxsD5_w,40111
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+ test/new-results/test/parameters/simu/true/mute-freqs/IGHV5-51_star_01.csv,sha256=0BOZU7pYns4oh593bGeq2V-qPaLAdH33RodQUnwDmlo,38980
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  test/paired/new-results/get-selection-metrics-new-simu-chosen-abs.csv,sha256=1OOMLjMahLNNNKO_5-S9SnpiH4ep2t_SkGWMIr3yHVY,12599
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- test/paired/new-results/run-times.csv,sha256=SxHAvZ-DhtiekK53vomsUCGdr0T5rq_Vv58tIS60VNs,195
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- test/paired/new-results/test.log,sha256=f3ft3V4CLOwDon2BQkEKnOP_lNkEC1V0JqH92uE3juE,72397
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+ test/paired/new-results/run-times.csv,sha256=g_CfjZOQr1mdsoTUX5je79j0_8um1Idv0nfHUiTPSWU,195
978
+ test/paired/new-results/test.log,sha256=uIV8elop0ESLS61dD6zew-lrhHMvzyqlrxj8BvegFzQ,72233
461
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  test/paired/new-results/partition-new-simu/partition-igh.yaml,sha256=qelM_0rtDDwpLWl6_ItvkrXioZ9MI6VMiLPMf6tcbIs,71140
462
980
  test/paired/new-results/partition-new-simu/partition-igk.yaml,sha256=9iTcIjgyiVsoADqym9El14fwDT4nU_xu2mWy_UeVHSA,46688
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  test/paired/new-results/partition-new-simu/partition-igl.yaml,sha256=XdV7rr3fQJPi3-5NvCxhHI4k5huOja8zxdI9XHWatMQ,23871
@@ -472,7 +990,7 @@ test/paired/new-results/partition-new-simu/true-pair-clean-performance-unpaired.
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  test/paired/new-results/partition-new-simu/true-pair-clean-performance.csv,sha256=EgjeHR05wFVPUvq8acCzf2LhT4c7niHXpEIoc9XyX9Q,178
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  test/paired/new-results/partition-new-simu/fasttree/iclust-0/fasttree.out,sha256=mqkth6pswWx75TJwW1dE_H2HQiy_d1ovFNDPJ6UlJmM,384
474
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  test/paired/new-results/partition-new-simu/fasttree/iclust-0/input-seqs.fa,sha256=uHZPu9HHvPAYd4yBC8o-FOdG0jH4ACJcCMhA4dmvvlY,5918
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- test/paired/new-results/partition-new-simu/fasttree/iclust-0/log,sha256=qibHlOA04zulsDy_r0_-A5Bcq6-QBJQx_2E7W83yH7A,1546
993
+ test/paired/new-results/partition-new-simu/fasttree/iclust-0/log,sha256=Kb3jlobsSgxJK30GzZyipHYx0f7NKd60LNS3ZXsNNTI,1546
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994
  test/paired/new-results/partition-new-simu/fasttree/iclust-1/fasttree.out,sha256=xmiiUt1hmQWLTOkbSt8J-9gsyE0sMhu0gNR1zxwUeDs,384
477
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  test/paired/new-results/partition-new-simu/fasttree/iclust-1/input-seqs.fa,sha256=hea0QDRuHtC6QGk7rioaP-qoH6JotckBqySdtILzyV8,6038
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  test/paired/new-results/partition-new-simu/fasttree/iclust-1/log,sha256=ZrJzIiTTObtQZaC5zUUfC2OBlRq5EN4Df6mGgMy7gXw,1547
@@ -488,7 +1006,7 @@ test/paired/new-results/partition-new-simu/igh+igk/partition-igh/fasttree/iclust
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  test/paired/new-results/partition-new-simu/igh+igk/partition-igh/fasttree/iclust-0/log,sha256=JBfqHjWLBe73f0IdBjocazFAS_fcXW83tZ7hq5YAycE,1708
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  test/paired/new-results/partition-new-simu/igh+igk/partition-igh/fasttree/iclust-1/fasttree.out,sha256=Qy5GcANnwMQQ3RMail9Te4CcLtZm-QcECudLEMDlv3w,261
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  test/paired/new-results/partition-new-simu/igh+igk/partition-igh/fasttree/iclust-1/input-seqs.fa,sha256=_AA1cnLEZd2n60CZ_FRSeUID4yggqfQyBXBbRa0ke5w,2723
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- test/paired/new-results/partition-new-simu/igh+igk/partition-igh/fasttree/iclust-1/log,sha256=N6NVOHJcTAVKhvtYFpMq6TpGdNchzSyDEriJMfShees,1707
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+ test/paired/new-results/partition-new-simu/igh+igk/partition-igh/fasttree/iclust-1/log,sha256=LBAEPrhG0adTcUkhUMZ5r14S6ixJtz4GFNTP9Ork4kk,1707
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  test/paired/new-results/partition-new-simu/igh+igk/partition-igk/fasttree/iclust-0/fasttree.out,sha256=Y8lUkgKD485OevPo-Uvn4tA1qqOSyDyQqDeYxrenWIQ,178
493
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  test/paired/new-results/partition-new-simu/igh+igk/partition-igk/fasttree/iclust-0/input-seqs.fa,sha256=xmghMTcWRSKgyfKU2rnLHgIF5uDeVXOkQH2xOPKxo-o,2825
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  test/paired/new-results/partition-new-simu/igh+igk/partition-igk/fasttree/iclust-0/log,sha256=RViVBnMIzWLyFzNukrjZzV5VF5ceEkEw3LcaA9CxH6U,1708
@@ -504,7 +1022,7 @@ test/paired/new-results/partition-new-simu/igh+igl/partition-igh/fasttree/iclust
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  test/paired/new-results/partition-new-simu/igh+igl/partition-igl/fasttree/iclust-0/fasttree.out,sha256=NHP0OvZj0TMxkdx4P9ZYz596LdXSPERT_nOWjYExxL8,332
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  test/paired/new-results/partition-new-simu/igh+igl/partition-igl/fasttree/iclust-0/input-seqs.fa,sha256=bCiUVJqUAENg7ZjDOY14bKORc4OH2ZWA1b7JKeRykKw,3152
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- test/paired/new-results/partition-new-simu/igh+igl/partition-igl/fasttree/iclust-0/log,sha256=m-k0tnJwBWXcyT7-ndxJ3uvVq3yAzech6sRklDNi5UU,1663
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+ test/paired/new-results/partition-new-simu/igh+igl/partition-igl/fasttree/iclust-0/log,sha256=8Xo831XMnBZ_2G2F-YC4hTNBx57UELN4FdPa0ocZa9g,1663
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  test/paired/new-results/partition-new-simu/igh+igl/partition-igl/fasttree/iclust-1/fasttree.out,sha256=nat74FqovsJB8XnyWZRGF1qNToiKUgi5biRMFKnmzWc,129
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@@ -732,7 +1250,7 @@ test/paired/new-results/seed-partition-new-simu/seeds/3542bd38d8-igh+3542bd38d8-
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@@ -1107,7 +1625,7 @@ test/paired/new-results/subset-partition-new-simu/isub-1/meta.yaml,sha256=J_IVfe
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+ test/paired/new-results/subset-partition-new-simu/isub-1/partition.log,sha256=q2htWWsRtjhdqcloo_fU1LMLbw2wETZ3To5kFHQW42A,24714
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@@ -1476,7 +1994,7 @@ test/paired/new-results/subset-partition-new-simu/merged-subsets/igh+igk/partiti
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- test/paired/new-results/subset-partition-new-simu/merged-subsets/parameters/igh/sw-cache.yaml,sha256=bTAyJcv8WAqZQF7MTm0q9Lxtc54RGNAiuY4N-BjtT1k,140730
1997
+ test/paired/new-results/subset-partition-new-simu/merged-subsets/parameters/igh/sw-cache.yaml,sha256=eQBjcO7oVgFydQZe64DUhgalvHa_rRTxhlps02mtLj8,140753
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  test/paired/new-results/subset-partition-new-simu/merged-subsets/parameters/igh/hmm/all-mean-mute-freqs.csv,sha256=LPJkL33RJZwT1nbvv80p_1r5J6pSyejnAb1rxjB5eU8,912
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@@ -1510,7 +2028,7 @@ test/paired/new-results/subset-partition-new-simu/merged-subsets/parameters/igh/
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  test/paired/new-results/subset-partition-new-simu/merged-subsets/parameters/igh/hmm/hmms/IGHV3-33_star_01.yaml,sha256=FU4oDYBlqRgZwlQrbG23AEZneBh-icKPaswTKnXojUI,103996
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- test/paired/new-results/subset-partition-new-simu/merged-subsets/parameters/igk/sw-cache.yaml,sha256=r2G9w5gYkUH7E2rClnXK9kOtorQ4eDT9YRx7f09HgGA,78731
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+ test/paired/new-results/subset-partition-new-simu/merged-subsets/parameters/igk/sw-cache.yaml,sha256=ss2XOx8UBK2NGL1IEzut6j05NsR0zkIdW0aZ0rdCaSM,78754
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  test/paired/new-results/subset-partition-new-simu/merged-subsets/parameters/igk/hmm/all-mean-mute-freqs.csv,sha256=yR5AuVGrcUAOe72bT-nEJap_zn3AwCpaXSrFGELbDyA,740
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@@ -1529,7 +2047,7 @@ test/paired/new-results/subset-partition-new-simu/merged-subsets/parameters/igk/
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- test/paired/new-results/subset-partition-new-simu/merged-subsets/parameters/igl/sw-cache.yaml,sha256=EwiOSjt-6BiOKIFBNrEWD6KNjqhb_a71YaAmCj46lM0,44416
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+ test/paired/new-results/subset-partition-new-simu/merged-subsets/parameters/igl/sw-cache.yaml,sha256=lFuXdxRwmqOG1gVCuLKGXhrM1wbYjNCnHuZeU1b7wJ8,44439
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  test/paired/new-results/subset-partition-new-simu/merged-subsets/parameters/igl/hmm/j_gene-probs.csv,sha256=ng_-k77f0BCTsX-VM_EGVf0CIxPYj59BGGkibFelC60,39
@@ -7899,8 +8417,8 @@ test/ref-results-slow/test/parameters/simu/true/mute-freqs/IGHV4-NL1_star_01.csv
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  test/ref-results-slow/test/parameters/simu/true/mute-freqs/IGHV5-10-1_star_01.csv,sha256=S075HCAZnbZpAMsXeLMmMXEGVHFs_Euk1XujtFQ46y4,41974
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  test/ref-results-slow/test/parameters/simu/true/mute-freqs/IGHV5-51_star_01.csv,sha256=QJGyDRqD2JezXsuMbNNXGSCM-kjaN2h4QGpgsaqTqXQ,57817
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  test/ref-results-slow/test/parameters/simu/true/mute-freqs/IGHV7-4-1_star_02.csv,sha256=k5KeCR5Qa6iEF0IEHR63DDdJStqAjcZxgZOUbKDFNaY,39977
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- partis_bcr-1.0.11.dist-info/METADATA,sha256=QgDlFi1DFmJM4EpY5WgBAkevB2jPqf90FmD57HEqfeo,5008
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- partis_bcr-1.0.11.dist-info/WHEEL,sha256=_N1vyLgwJ10g4JxFsp-IfU42zGJgf-DUqwfdbV1YvEM,115
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- partis_bcr-1.0.11.dist-info/entry_points.txt,sha256=Q-AkAQ91YwiKNHruS32ACdY4_IQdpZhpij2EuVDmdnM,44
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- partis_bcr-1.0.11.dist-info/top_level.txt,sha256=J-z0poNcsv31IHB413--iOY8LoHBKiTHeybHX3abokI,7
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- partis_bcr-1.0.11.dist-info/RECORD,,
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+ partis_bcr-1.0.11.post1.dev7.dist-info/METADATA,sha256=EBXznkBlcbq-kPyrsuamte-iOLrHY-8CBH57ynf5MU8,5019
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+ partis_bcr-1.0.11.post1.dev7.dist-info/WHEEL,sha256=_N1vyLgwJ10g4JxFsp-IfU42zGJgf-DUqwfdbV1YvEM,115
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+ partis_bcr-1.0.11.post1.dev7.dist-info/entry_points.txt,sha256=Q-AkAQ91YwiKNHruS32ACdY4_IQdpZhpij2EuVDmdnM,44
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+ partis_bcr-1.0.11.post1.dev7.dist-info/top_level.txt,sha256=J-z0poNcsv31IHB413--iOY8LoHBKiTHeybHX3abokI,7
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+ partis_bcr-1.0.11.post1.dev7.dist-info/RECORD,,