partis-bcr 1.0.11.post1.dev1__cp312-cp312-manylinux1_x86_64.whl → 1.0.11.post1.dev7__cp312-cp312-manylinux1_x86_64.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (655) hide show
  1. bin/partis +1 -1
  2. bin/partis-test.py +6 -0
  3. bin/partis.py +1 -1
  4. {partis_bcr-1.0.11.post1.dev1.data → partis_bcr-1.0.11.post1.dev7.data}/scripts/partis-test.py +6 -0
  5. {partis_bcr-1.0.11.post1.dev1.dist-info → partis_bcr-1.0.11.post1.dev7.dist-info}/METADATA +1 -1
  6. {partis_bcr-1.0.11.post1.dev1.dist-info → partis_bcr-1.0.11.post1.dev7.dist-info}/RECORD +655 -127
  7. python/recombinator.py +2 -0
  8. python/treegenerator.py +1 -1
  9. test/new-results/annotate-new-simu-annotation-performance/hmm/boundaries/d_3p_del.csv +7 -0
  10. test/new-results/annotate-new-simu-annotation-performance/hmm/boundaries/d_5p_del.csv +8 -0
  11. test/new-results/annotate-new-simu-annotation-performance/hmm/boundaries/dj_insertion.csv +8 -0
  12. test/new-results/annotate-new-simu-annotation-performance/hmm/boundaries/fv_insertion.csv +10 -0
  13. test/new-results/annotate-new-simu-annotation-performance/hmm/boundaries/j_3p_del.csv +4 -0
  14. test/new-results/annotate-new-simu-annotation-performance/hmm/boundaries/j_5p_del.csv +8 -0
  15. test/new-results/annotate-new-simu-annotation-performance/hmm/boundaries/jf_insertion.csv +4 -0
  16. test/new-results/annotate-new-simu-annotation-performance/hmm/boundaries/shm_indel_length.csv +8 -0
  17. test/new-results/annotate-new-simu-annotation-performance/hmm/boundaries/v_3p_del.csv +4 -0
  18. test/new-results/annotate-new-simu-annotation-performance/hmm/boundaries/v_5p_del.csv +4 -0
  19. test/new-results/annotate-new-simu-annotation-performance/hmm/boundaries/vd_insertion.csv +8 -0
  20. test/new-results/annotate-new-simu-annotation-performance/hmm/gene-call/d_allele_fraction_correct_vs_per_gene_support.csv +28 -0
  21. test/new-results/annotate-new-simu-annotation-performance/hmm/gene-call/d_fraction_correct_vs_mute_freq.csv +28 -0
  22. test/new-results/annotate-new-simu-annotation-performance/hmm/gene-call/d_gene.csv +5 -0
  23. test/new-results/annotate-new-simu-annotation-performance/hmm/gene-call/j_allele_fraction_correct_vs_per_gene_support.csv +28 -0
  24. test/new-results/annotate-new-simu-annotation-performance/hmm/gene-call/j_fraction_correct_vs_mute_freq.csv +28 -0
  25. test/new-results/annotate-new-simu-annotation-performance/hmm/gene-call/j_gene.csv +5 -0
  26. test/new-results/annotate-new-simu-annotation-performance/hmm/gene-call/v_allele_fraction_correct_vs_per_gene_support.csv +28 -0
  27. test/new-results/annotate-new-simu-annotation-performance/hmm/gene-call/v_fraction_correct_vs_mute_freq.csv +28 -0
  28. test/new-results/annotate-new-simu-annotation-performance/hmm/gene-call/v_gene.csv +5 -0
  29. test/new-results/annotate-new-simu-annotation-performance/hmm/mutation/cdr3_hamming_to_true_naive.csv +7 -0
  30. test/new-results/annotate-new-simu-annotation-performance/hmm/mutation/cdr3_muted_bases.csv +7 -0
  31. test/new-results/annotate-new-simu-annotation-performance/hmm/mutation/d_hamming_to_true_naive.csv +5 -0
  32. test/new-results/annotate-new-simu-annotation-performance/hmm/mutation/d_muted_bases.csv +6 -0
  33. test/new-results/annotate-new-simu-annotation-performance/hmm/mutation/hamming_to_true_naive.csv +7 -0
  34. test/new-results/annotate-new-simu-annotation-performance/hmm/mutation/j_hamming_to_true_naive.csv +4 -0
  35. test/new-results/annotate-new-simu-annotation-performance/hmm/mutation/j_muted_bases.csv +5 -0
  36. test/new-results/annotate-new-simu-annotation-performance/hmm/mutation/mute_freqs.csv +28 -0
  37. test/new-results/annotate-new-simu-annotation-performance/hmm/mutation/muted_bases.csv +7 -0
  38. test/new-results/annotate-new-simu-annotation-performance/hmm/mutation/v_hamming_to_true_naive.csv +4 -0
  39. test/new-results/annotate-new-simu-annotation-performance/hmm/mutation/v_muted_bases.csv +4 -0
  40. test/new-results/annotate-new-simu-annotation-performance/sw/boundaries/d_3p_del.csv +8 -0
  41. test/new-results/annotate-new-simu-annotation-performance/sw/boundaries/d_5p_del.csv +6 -0
  42. test/new-results/annotate-new-simu-annotation-performance/sw/boundaries/dj_insertion.csv +7 -0
  43. test/new-results/annotate-new-simu-annotation-performance/sw/boundaries/fv_insertion.csv +4 -0
  44. test/new-results/annotate-new-simu-annotation-performance/sw/boundaries/j_3p_del.csv +4 -0
  45. test/new-results/annotate-new-simu-annotation-performance/sw/boundaries/j_5p_del.csv +9 -0
  46. test/new-results/annotate-new-simu-annotation-performance/sw/boundaries/jf_insertion.csv +4 -0
  47. test/new-results/annotate-new-simu-annotation-performance/sw/boundaries/shm_indel_length.csv +8 -0
  48. test/new-results/annotate-new-simu-annotation-performance/sw/boundaries/v_3p_del.csv +4 -0
  49. test/new-results/annotate-new-simu-annotation-performance/sw/boundaries/v_5p_del.csv +4 -0
  50. test/new-results/annotate-new-simu-annotation-performance/sw/boundaries/vd_insertion.csv +6 -0
  51. test/new-results/annotate-new-simu-annotation-performance/sw/gene-call/d_fraction_correct_vs_mute_freq.csv +28 -0
  52. test/new-results/annotate-new-simu-annotation-performance/sw/gene-call/d_gene.csv +5 -0
  53. test/new-results/annotate-new-simu-annotation-performance/sw/gene-call/j_fraction_correct_vs_mute_freq.csv +28 -0
  54. test/new-results/annotate-new-simu-annotation-performance/sw/gene-call/j_gene.csv +5 -0
  55. test/new-results/annotate-new-simu-annotation-performance/sw/gene-call/v_fraction_correct_vs_mute_freq.csv +28 -0
  56. test/new-results/annotate-new-simu-annotation-performance/sw/gene-call/v_gene.csv +5 -0
  57. test/new-results/annotate-new-simu-annotation-performance/sw/mutation/cdr3_hamming_to_true_naive.csv +6 -0
  58. test/new-results/annotate-new-simu-annotation-performance/sw/mutation/cdr3_muted_bases.csv +7 -0
  59. test/new-results/annotate-new-simu-annotation-performance/sw/mutation/d_hamming_to_true_naive.csv +5 -0
  60. test/new-results/annotate-new-simu-annotation-performance/sw/mutation/d_muted_bases.csv +5 -0
  61. test/new-results/annotate-new-simu-annotation-performance/sw/mutation/hamming_to_true_naive.csv +6 -0
  62. test/new-results/annotate-new-simu-annotation-performance/sw/mutation/j_hamming_to_true_naive.csv +4 -0
  63. test/new-results/annotate-new-simu-annotation-performance/sw/mutation/j_muted_bases.csv +6 -0
  64. test/new-results/annotate-new-simu-annotation-performance/sw/mutation/mute_freqs.csv +28 -0
  65. test/new-results/annotate-new-simu-annotation-performance/sw/mutation/muted_bases.csv +7 -0
  66. test/new-results/annotate-new-simu-annotation-performance/sw/mutation/v_hamming_to_true_naive.csv +4 -0
  67. test/new-results/annotate-new-simu-annotation-performance/sw/mutation/v_muted_bases.csv +4 -0
  68. test/new-results/annotate-new-simu.yaml +1 -0
  69. test/new-results/cache-new-partition.csv +59 -0
  70. test/new-results/get-selection-metrics-new-simu.yaml +1 -0
  71. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/boundaries/d_3p_del.csv +7 -0
  72. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/boundaries/d_5p_del.csv +6 -0
  73. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/boundaries/dj_insertion.csv +8 -0
  74. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/boundaries/fv_insertion.csv +10 -0
  75. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/boundaries/j_3p_del.csv +4 -0
  76. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/boundaries/j_5p_del.csv +8 -0
  77. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/boundaries/jf_insertion.csv +4 -0
  78. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/boundaries/shm_indel_length.csv +8 -0
  79. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/boundaries/v_3p_del.csv +4 -0
  80. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/boundaries/v_5p_del.csv +4 -0
  81. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/boundaries/vd_insertion.csv +6 -0
  82. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/gene-call/d_allele_fraction_correct_vs_per_gene_support.csv +28 -0
  83. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/gene-call/d_fraction_correct_vs_mute_freq.csv +28 -0
  84. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/gene-call/d_gene.csv +5 -0
  85. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/gene-call/j_allele_fraction_correct_vs_per_gene_support.csv +28 -0
  86. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/gene-call/j_fraction_correct_vs_mute_freq.csv +28 -0
  87. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/gene-call/j_gene.csv +5 -0
  88. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/gene-call/v_allele_fraction_correct_vs_per_gene_support.csv +28 -0
  89. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/gene-call/v_fraction_correct_vs_mute_freq.csv +28 -0
  90. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/gene-call/v_gene.csv +5 -0
  91. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/mutation/cdr3_hamming_to_true_naive.csv +5 -0
  92. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/mutation/cdr3_muted_bases.csv +5 -0
  93. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/mutation/d_hamming_to_true_naive.csv +4 -0
  94. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/mutation/d_muted_bases.csv +4 -0
  95. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/mutation/hamming_to_true_naive.csv +5 -0
  96. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/mutation/j_hamming_to_true_naive.csv +4 -0
  97. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/mutation/j_muted_bases.csv +5 -0
  98. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/mutation/mute_freqs.csv +28 -0
  99. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/mutation/muted_bases.csv +5 -0
  100. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/mutation/v_hamming_to_true_naive.csv +4 -0
  101. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/mutation/v_muted_bases.csv +4 -0
  102. test/new-results/multi-annotate-new-simu-annotation-performance/sw/boundaries/d_3p_del.csv +8 -0
  103. test/new-results/multi-annotate-new-simu-annotation-performance/sw/boundaries/d_5p_del.csv +6 -0
  104. test/new-results/multi-annotate-new-simu-annotation-performance/sw/boundaries/dj_insertion.csv +7 -0
  105. test/new-results/multi-annotate-new-simu-annotation-performance/sw/boundaries/fv_insertion.csv +4 -0
  106. test/new-results/multi-annotate-new-simu-annotation-performance/sw/boundaries/j_3p_del.csv +4 -0
  107. test/new-results/multi-annotate-new-simu-annotation-performance/sw/boundaries/j_5p_del.csv +9 -0
  108. test/new-results/multi-annotate-new-simu-annotation-performance/sw/boundaries/jf_insertion.csv +4 -0
  109. test/new-results/multi-annotate-new-simu-annotation-performance/sw/boundaries/shm_indel_length.csv +8 -0
  110. test/new-results/multi-annotate-new-simu-annotation-performance/sw/boundaries/v_3p_del.csv +4 -0
  111. test/new-results/multi-annotate-new-simu-annotation-performance/sw/boundaries/v_5p_del.csv +4 -0
  112. test/new-results/multi-annotate-new-simu-annotation-performance/sw/boundaries/vd_insertion.csv +6 -0
  113. test/new-results/multi-annotate-new-simu-annotation-performance/sw/gene-call/d_fraction_correct_vs_mute_freq.csv +28 -0
  114. test/new-results/multi-annotate-new-simu-annotation-performance/sw/gene-call/d_gene.csv +5 -0
  115. test/new-results/multi-annotate-new-simu-annotation-performance/sw/gene-call/j_fraction_correct_vs_mute_freq.csv +28 -0
  116. test/new-results/multi-annotate-new-simu-annotation-performance/sw/gene-call/j_gene.csv +5 -0
  117. test/new-results/multi-annotate-new-simu-annotation-performance/sw/gene-call/v_fraction_correct_vs_mute_freq.csv +28 -0
  118. test/new-results/multi-annotate-new-simu-annotation-performance/sw/gene-call/v_gene.csv +5 -0
  119. test/new-results/multi-annotate-new-simu-annotation-performance/sw/mutation/cdr3_hamming_to_true_naive.csv +6 -0
  120. test/new-results/multi-annotate-new-simu-annotation-performance/sw/mutation/cdr3_muted_bases.csv +7 -0
  121. test/new-results/multi-annotate-new-simu-annotation-performance/sw/mutation/d_hamming_to_true_naive.csv +5 -0
  122. test/new-results/multi-annotate-new-simu-annotation-performance/sw/mutation/d_muted_bases.csv +5 -0
  123. test/new-results/multi-annotate-new-simu-annotation-performance/sw/mutation/hamming_to_true_naive.csv +6 -0
  124. test/new-results/multi-annotate-new-simu-annotation-performance/sw/mutation/j_hamming_to_true_naive.csv +4 -0
  125. test/new-results/multi-annotate-new-simu-annotation-performance/sw/mutation/j_muted_bases.csv +6 -0
  126. test/new-results/multi-annotate-new-simu-annotation-performance/sw/mutation/mute_freqs.csv +28 -0
  127. test/new-results/multi-annotate-new-simu-annotation-performance/sw/mutation/muted_bases.csv +7 -0
  128. test/new-results/multi-annotate-new-simu-annotation-performance/sw/mutation/v_hamming_to_true_naive.csv +4 -0
  129. test/new-results/multi-annotate-new-simu-annotation-performance/sw/mutation/v_muted_bases.csv +4 -0
  130. test/new-results/multi-annotate-new-simu.yaml +1 -0
  131. test/new-results/partition-new-simu/fasttree/iclust-0/fasttree.out +1 -0
  132. test/new-results/partition-new-simu/fasttree/iclust-0/input-seqs.fa +24 -0
  133. test/new-results/partition-new-simu/fasttree/iclust-0/log +23 -0
  134. test/new-results/partition-new-simu/fasttree/iclust-1/fasttree.out +1 -0
  135. test/new-results/partition-new-simu/fasttree/iclust-1/input-seqs.fa +16 -0
  136. test/new-results/partition-new-simu/fasttree/iclust-1/log +23 -0
  137. test/new-results/partition-new-simu/fasttree/iclust-2/fasttree.out +1 -0
  138. test/new-results/partition-new-simu/fasttree/iclust-2/input-seqs.fa +16 -0
  139. test/new-results/partition-new-simu/fasttree/iclust-2/log +22 -0
  140. test/new-results/partition-new-simu-annotation-performance/hmm/boundaries/d_3p_del.csv +7 -0
  141. test/new-results/partition-new-simu-annotation-performance/hmm/boundaries/d_5p_del.csv +6 -0
  142. test/new-results/partition-new-simu-annotation-performance/hmm/boundaries/dj_insertion.csv +8 -0
  143. test/new-results/partition-new-simu-annotation-performance/hmm/boundaries/fv_insertion.csv +10 -0
  144. test/new-results/partition-new-simu-annotation-performance/hmm/boundaries/j_3p_del.csv +4 -0
  145. test/new-results/partition-new-simu-annotation-performance/hmm/boundaries/j_5p_del.csv +8 -0
  146. test/new-results/partition-new-simu-annotation-performance/hmm/boundaries/jf_insertion.csv +4 -0
  147. test/new-results/partition-new-simu-annotation-performance/hmm/boundaries/shm_indel_length.csv +8 -0
  148. test/new-results/partition-new-simu-annotation-performance/hmm/boundaries/v_3p_del.csv +4 -0
  149. test/new-results/partition-new-simu-annotation-performance/hmm/boundaries/v_5p_del.csv +4 -0
  150. test/new-results/partition-new-simu-annotation-performance/hmm/boundaries/vd_insertion.csv +6 -0
  151. test/new-results/partition-new-simu-annotation-performance/hmm/gene-call/d_allele_fraction_correct_vs_per_gene_support.csv +28 -0
  152. test/new-results/partition-new-simu-annotation-performance/hmm/gene-call/d_fraction_correct_vs_mute_freq.csv +28 -0
  153. test/new-results/partition-new-simu-annotation-performance/hmm/gene-call/d_gene.csv +5 -0
  154. test/new-results/partition-new-simu-annotation-performance/hmm/gene-call/j_allele_fraction_correct_vs_per_gene_support.csv +28 -0
  155. test/new-results/partition-new-simu-annotation-performance/hmm/gene-call/j_fraction_correct_vs_mute_freq.csv +28 -0
  156. test/new-results/partition-new-simu-annotation-performance/hmm/gene-call/j_gene.csv +5 -0
  157. test/new-results/partition-new-simu-annotation-performance/hmm/gene-call/v_allele_fraction_correct_vs_per_gene_support.csv +28 -0
  158. test/new-results/partition-new-simu-annotation-performance/hmm/gene-call/v_fraction_correct_vs_mute_freq.csv +28 -0
  159. test/new-results/partition-new-simu-annotation-performance/hmm/gene-call/v_gene.csv +5 -0
  160. test/new-results/partition-new-simu-annotation-performance/hmm/mutation/cdr3_hamming_to_true_naive.csv +5 -0
  161. test/new-results/partition-new-simu-annotation-performance/hmm/mutation/cdr3_muted_bases.csv +5 -0
  162. test/new-results/partition-new-simu-annotation-performance/hmm/mutation/d_hamming_to_true_naive.csv +4 -0
  163. test/new-results/partition-new-simu-annotation-performance/hmm/mutation/d_muted_bases.csv +4 -0
  164. test/new-results/partition-new-simu-annotation-performance/hmm/mutation/hamming_to_true_naive.csv +5 -0
  165. test/new-results/partition-new-simu-annotation-performance/hmm/mutation/j_hamming_to_true_naive.csv +4 -0
  166. test/new-results/partition-new-simu-annotation-performance/hmm/mutation/j_muted_bases.csv +5 -0
  167. test/new-results/partition-new-simu-annotation-performance/hmm/mutation/mute_freqs.csv +28 -0
  168. test/new-results/partition-new-simu-annotation-performance/hmm/mutation/muted_bases.csv +5 -0
  169. test/new-results/partition-new-simu-annotation-performance/hmm/mutation/v_hamming_to_true_naive.csv +4 -0
  170. test/new-results/partition-new-simu-annotation-performance/hmm/mutation/v_muted_bases.csv +4 -0
  171. test/new-results/partition-new-simu-annotation-performance/sw/boundaries/d_3p_del.csv +8 -0
  172. test/new-results/partition-new-simu-annotation-performance/sw/boundaries/d_5p_del.csv +6 -0
  173. test/new-results/partition-new-simu-annotation-performance/sw/boundaries/dj_insertion.csv +7 -0
  174. test/new-results/partition-new-simu-annotation-performance/sw/boundaries/fv_insertion.csv +4 -0
  175. test/new-results/partition-new-simu-annotation-performance/sw/boundaries/j_3p_del.csv +4 -0
  176. test/new-results/partition-new-simu-annotation-performance/sw/boundaries/j_5p_del.csv +9 -0
  177. test/new-results/partition-new-simu-annotation-performance/sw/boundaries/jf_insertion.csv +4 -0
  178. test/new-results/partition-new-simu-annotation-performance/sw/boundaries/shm_indel_length.csv +8 -0
  179. test/new-results/partition-new-simu-annotation-performance/sw/boundaries/v_3p_del.csv +4 -0
  180. test/new-results/partition-new-simu-annotation-performance/sw/boundaries/v_5p_del.csv +4 -0
  181. test/new-results/partition-new-simu-annotation-performance/sw/boundaries/vd_insertion.csv +6 -0
  182. test/new-results/partition-new-simu-annotation-performance/sw/gene-call/d_fraction_correct_vs_mute_freq.csv +28 -0
  183. test/new-results/partition-new-simu-annotation-performance/sw/gene-call/d_gene.csv +5 -0
  184. test/new-results/partition-new-simu-annotation-performance/sw/gene-call/j_fraction_correct_vs_mute_freq.csv +28 -0
  185. test/new-results/partition-new-simu-annotation-performance/sw/gene-call/j_gene.csv +5 -0
  186. test/new-results/partition-new-simu-annotation-performance/sw/gene-call/v_fraction_correct_vs_mute_freq.csv +28 -0
  187. test/new-results/partition-new-simu-annotation-performance/sw/gene-call/v_gene.csv +5 -0
  188. test/new-results/partition-new-simu-annotation-performance/sw/mutation/cdr3_hamming_to_true_naive.csv +6 -0
  189. test/new-results/partition-new-simu-annotation-performance/sw/mutation/cdr3_muted_bases.csv +7 -0
  190. test/new-results/partition-new-simu-annotation-performance/sw/mutation/d_hamming_to_true_naive.csv +5 -0
  191. test/new-results/partition-new-simu-annotation-performance/sw/mutation/d_muted_bases.csv +5 -0
  192. test/new-results/partition-new-simu-annotation-performance/sw/mutation/hamming_to_true_naive.csv +6 -0
  193. test/new-results/partition-new-simu-annotation-performance/sw/mutation/j_hamming_to_true_naive.csv +4 -0
  194. test/new-results/partition-new-simu-annotation-performance/sw/mutation/j_muted_bases.csv +6 -0
  195. test/new-results/partition-new-simu-annotation-performance/sw/mutation/mute_freqs.csv +28 -0
  196. test/new-results/partition-new-simu-annotation-performance/sw/mutation/muted_bases.csv +7 -0
  197. test/new-results/partition-new-simu-annotation-performance/sw/mutation/v_hamming_to_true_naive.csv +4 -0
  198. test/new-results/partition-new-simu-annotation-performance/sw/mutation/v_muted_bases.csv +4 -0
  199. test/new-results/partition-new-simu.yaml +1 -0
  200. test/new-results/run-times.csv +10 -0
  201. test/new-results/seed-partition-new-simu.yaml +1 -0
  202. test/new-results/test/parameters/data/hmm/all-mean-mute-freqs.csv +43 -0
  203. test/new-results/test/parameters/data/hmm/all-mean-n-muted.csv +155 -0
  204. test/new-results/test/parameters/data/hmm/all-probs.csv +44 -0
  205. test/new-results/test/parameters/data/hmm/cluster_size.csv +2 -0
  206. test/new-results/test/parameters/data/hmm/d-mean-mute-freqs.csv +43 -0
  207. test/new-results/test/parameters/data/hmm/d-mean-n-muted.csv +14 -0
  208. test/new-results/test/parameters/data/hmm/d_gene-d_3p_del-probs.csv +34 -0
  209. test/new-results/test/parameters/data/hmm/d_gene-d_5p_del-probs.csv +42 -0
  210. test/new-results/test/parameters/data/hmm/d_gene-probs.csv +20 -0
  211. test/new-results/test/parameters/data/hmm/d_gene-vd_insertion-probs.csv +39 -0
  212. test/new-results/test/parameters/data/hmm/dj_insertion_content.csv +5 -0
  213. test/new-results/test/parameters/data/hmm/fv_insertion-probs.csv +4 -0
  214. test/new-results/test/parameters/data/hmm/germline-sets/igh/extras.csv +23 -0
  215. test/new-results/test/parameters/data/hmm/germline-sets/igh/ighd.fasta +38 -0
  216. test/new-results/test/parameters/data/hmm/germline-sets/igh/ighj.fasta +14 -0
  217. test/new-results/test/parameters/data/hmm/germline-sets/igh/ighv.fasta +30 -0
  218. test/new-results/test/parameters/data/hmm/hmms/IGHD1-20_star_01.yaml +449 -0
  219. test/new-results/test/parameters/data/hmm/hmms/IGHD1-26_star_01.yaml +512 -0
  220. test/new-results/test/parameters/data/hmm/hmms/IGHD2-15_star_01.yaml +743 -0
  221. test/new-results/test/parameters/data/hmm/hmms/IGHD2-21_star_01.yaml +681 -0
  222. test/new-results/test/parameters/data/hmm/hmms/IGHD2-21_star_02.yaml +681 -0
  223. test/new-results/test/parameters/data/hmm/hmms/IGHD2-2_star_01.yaml +743 -0
  224. test/new-results/test/parameters/data/hmm/hmms/IGHD2-8_star_01.yaml +744 -0
  225. test/new-results/test/parameters/data/hmm/hmms/IGHD2-8_star_02.yaml +743 -0
  226. test/new-results/test/parameters/data/hmm/hmms/IGHD3-10_star_01.yaml +743 -0
  227. test/new-results/test/parameters/data/hmm/hmms/IGHD3-10_star_03.yaml +744 -0
  228. test/new-results/test/parameters/data/hmm/hmms/IGHD3-16_star_02.yaml +870 -0
  229. test/new-results/test/parameters/data/hmm/hmms/IGHD3-22_star_01.yaml +743 -0
  230. test/new-results/test/parameters/data/hmm/hmms/IGHD3-3_star_01.yaml +744 -0
  231. test/new-results/test/parameters/data/hmm/hmms/IGHD4-17_star_01.yaml +429 -0
  232. test/new-results/test/parameters/data/hmm/hmms/IGHD4-4_star_01.yaml +428 -0
  233. test/new-results/test/parameters/data/hmm/hmms/IGHD5-5_star_01.yaml +513 -0
  234. test/new-results/test/parameters/data/hmm/hmms/IGHD6-13_star_01.yaml +533 -0
  235. test/new-results/test/parameters/data/hmm/hmms/IGHD6-19_star_01.yaml +534 -0
  236. test/new-results/test/parameters/data/hmm/hmms/IGHD6-6_star_01.yaml +470 -0
  237. test/new-results/test/parameters/data/hmm/hmms/IGHJ1_star_01.yaml +986 -0
  238. test/new-results/test/parameters/data/hmm/hmms/IGHJ2_star_01.yaml +1006 -0
  239. test/new-results/test/parameters/data/hmm/hmms/IGHJ3_star_02.yaml +946 -0
  240. test/new-results/test/parameters/data/hmm/hmms/IGHJ4_star_02.yaml +906 -0
  241. test/new-results/test/parameters/data/hmm/hmms/IGHJ5_star_02.yaml +966 -0
  242. test/new-results/test/parameters/data/hmm/hmms/IGHJ6_star_02.yaml +1206 -0
  243. test/new-results/test/parameters/data/hmm/hmms/IGHJ6_star_03.yaml +1206 -0
  244. test/new-results/test/parameters/data/hmm/hmms/IGHV1-18_star_01.yaml +4484 -0
  245. test/new-results/test/parameters/data/hmm/hmms/IGHV1-2_star_02.yaml +4484 -0
  246. test/new-results/test/parameters/data/hmm/hmms/IGHV2-5_star_02.yaml +4560 -0
  247. test/new-results/test/parameters/data/hmm/hmms/IGHV2-70D_star_04.yaml +4561 -0
  248. test/new-results/test/parameters/data/hmm/hmms/IGHV3-11_star_04.yaml +4484 -0
  249. test/new-results/test/parameters/data/hmm/hmms/IGHV3-23_star_01.yaml +4484 -0
  250. test/new-results/test/parameters/data/hmm/hmms/IGHV3-66_star_02.yaml +4439 -0
  251. test/new-results/test/parameters/data/hmm/hmms/IGHV3-69-1_star_02.yaml +4439 -0
  252. test/new-results/test/parameters/data/hmm/hmms/IGHV3-7_star_05.yaml +4484 -0
  253. test/new-results/test/parameters/data/hmm/hmms/IGHV3-9_star_02.yaml +4516 -0
  254. test/new-results/test/parameters/data/hmm/hmms/IGHV4-34_star_01.yaml +4439 -0
  255. test/new-results/test/parameters/data/hmm/hmms/IGHV4-39_star_09.yaml +4529 -0
  256. test/new-results/test/parameters/data/hmm/hmms/IGHV4-4_star_09.yaml +4438 -0
  257. test/new-results/test/parameters/data/hmm/hmms/IGHV4-61_star_01.yaml +4529 -0
  258. test/new-results/test/parameters/data/hmm/hmms/IGHV5-51_star_01.yaml +4484 -0
  259. test/new-results/test/parameters/data/hmm/j-mean-mute-freqs.csv +43 -0
  260. test/new-results/test/parameters/data/hmm/j-mean-n-muted.csv +25 -0
  261. test/new-results/test/parameters/data/hmm/j_gene-dj_insertion-probs.csv +31 -0
  262. test/new-results/test/parameters/data/hmm/j_gene-j_3p_del-probs.csv +8 -0
  263. test/new-results/test/parameters/data/hmm/j_gene-j_5p_del-probs.csv +31 -0
  264. test/new-results/test/parameters/data/hmm/j_gene-probs.csv +8 -0
  265. test/new-results/test/parameters/data/hmm/jf_insertion-probs.csv +3 -0
  266. test/new-results/test/parameters/data/hmm/mute-freqs/IGHD1-20_star_01.csv +8 -0
  267. test/new-results/test/parameters/data/hmm/mute-freqs/IGHD1-26_star_01.csv +8 -0
  268. test/new-results/test/parameters/data/hmm/mute-freqs/IGHD2-15_star_01.csv +32 -0
  269. test/new-results/test/parameters/data/hmm/mute-freqs/IGHD2-21_star_01.csv +17 -0
  270. test/new-results/test/parameters/data/hmm/mute-freqs/IGHD2-21_star_02.csv +29 -0
  271. test/new-results/test/parameters/data/hmm/mute-freqs/IGHD2-2_star_01.csv +10 -0
  272. test/new-results/test/parameters/data/hmm/mute-freqs/IGHD2-8_star_01.csv +32 -0
  273. test/new-results/test/parameters/data/hmm/mute-freqs/IGHD2-8_star_02.csv +9 -0
  274. test/new-results/test/parameters/data/hmm/mute-freqs/IGHD3-10_star_01.csv +27 -0
  275. test/new-results/test/parameters/data/hmm/mute-freqs/IGHD3-10_star_03.csv +14 -0
  276. test/new-results/test/parameters/data/hmm/mute-freqs/IGHD3-16_star_02.csv +35 -0
  277. test/new-results/test/parameters/data/hmm/mute-freqs/IGHD3-22_star_01.csv +32 -0
  278. test/new-results/test/parameters/data/hmm/mute-freqs/IGHD3-3_star_01.csv +21 -0
  279. test/new-results/test/parameters/data/hmm/mute-freqs/IGHD4-17_star_01.csv +12 -0
  280. test/new-results/test/parameters/data/hmm/mute-freqs/IGHD4-4_star_01.csv +12 -0
  281. test/new-results/test/parameters/data/hmm/mute-freqs/IGHD5-5_star_01.csv +13 -0
  282. test/new-results/test/parameters/data/hmm/mute-freqs/IGHD6-13_star_01.csv +22 -0
  283. test/new-results/test/parameters/data/hmm/mute-freqs/IGHD6-19_star_01.csv +22 -0
  284. test/new-results/test/parameters/data/hmm/mute-freqs/IGHD6-6_star_01.csv +19 -0
  285. test/new-results/test/parameters/data/hmm/mute-freqs/IGHJ1_star_01.csv +52 -0
  286. test/new-results/test/parameters/data/hmm/mute-freqs/IGHJ2_star_01.csv +54 -0
  287. test/new-results/test/parameters/data/hmm/mute-freqs/IGHJ3_star_02.csv +51 -0
  288. test/new-results/test/parameters/data/hmm/mute-freqs/IGHJ4_star_02.csv +49 -0
  289. test/new-results/test/parameters/data/hmm/mute-freqs/IGHJ5_star_02.csv +50 -0
  290. test/new-results/test/parameters/data/hmm/mute-freqs/IGHJ6_star_02.csv +33 -0
  291. test/new-results/test/parameters/data/hmm/mute-freqs/IGHJ6_star_03.csv +40 -0
  292. test/new-results/test/parameters/data/hmm/mute-freqs/IGHV1-18_star_01.csv +297 -0
  293. test/new-results/test/parameters/data/hmm/mute-freqs/IGHV1-2_star_02.csv +296 -0
  294. test/new-results/test/parameters/data/hmm/mute-freqs/IGHV2-5_star_02.csv +66 -0
  295. test/new-results/test/parameters/data/hmm/mute-freqs/IGHV2-70D_star_04.csv +89 -0
  296. test/new-results/test/parameters/data/hmm/mute-freqs/IGHV3-11_star_04.csv +73 -0
  297. test/new-results/test/parameters/data/hmm/mute-freqs/IGHV3-23_star_01.csv +297 -0
  298. test/new-results/test/parameters/data/hmm/mute-freqs/IGHV3-66_star_02.csv +294 -0
  299. test/new-results/test/parameters/data/hmm/mute-freqs/IGHV3-69-1_star_02.csv +38 -0
  300. test/new-results/test/parameters/data/hmm/mute-freqs/IGHV3-7_star_05.csv +70 -0
  301. test/new-results/test/parameters/data/hmm/mute-freqs/IGHV3-9_star_02.csv +40 -0
  302. test/new-results/test/parameters/data/hmm/mute-freqs/IGHV4-34_star_01.csv +40 -0
  303. test/new-results/test/parameters/data/hmm/mute-freqs/IGHV4-39_star_09.csv +40 -0
  304. test/new-results/test/parameters/data/hmm/mute-freqs/IGHV4-4_star_09.csv +59 -0
  305. test/new-results/test/parameters/data/hmm/mute-freqs/IGHV4-61_star_01.csv +300 -0
  306. test/new-results/test/parameters/data/hmm/mute-freqs/IGHV5-51_star_01.csv +296 -0
  307. test/new-results/test/parameters/data/hmm/seq_content.csv +5 -0
  308. test/new-results/test/parameters/data/hmm/v-mean-mute-freqs.csv +43 -0
  309. test/new-results/test/parameters/data/hmm/v-mean-n-muted.csv +122 -0
  310. test/new-results/test/parameters/data/hmm/v_gene-probs.csv +16 -0
  311. test/new-results/test/parameters/data/hmm/v_gene-v_3p_del-probs.csv +24 -0
  312. test/new-results/test/parameters/data/hmm/v_gene-v_5p_del-probs.csv +16 -0
  313. test/new-results/test/parameters/data/hmm/vd_insertion_content.csv +5 -0
  314. test/new-results/test/parameters/data/sw/all-mean-mute-freqs.csv +43 -0
  315. test/new-results/test/parameters/data/sw/all-mean-n-muted.csv +155 -0
  316. test/new-results/test/parameters/data/sw/all-probs.csv +44 -0
  317. test/new-results/test/parameters/data/sw/cluster_size.csv +2 -0
  318. test/new-results/test/parameters/data/sw/d-mean-mute-freqs.csv +43 -0
  319. test/new-results/test/parameters/data/sw/d-mean-n-muted.csv +14 -0
  320. test/new-results/test/parameters/data/sw/d_gene-d_3p_del-probs.csv +40 -0
  321. test/new-results/test/parameters/data/sw/d_gene-d_5p_del-probs.csv +42 -0
  322. test/new-results/test/parameters/data/sw/d_gene-probs.csv +23 -0
  323. test/new-results/test/parameters/data/sw/d_gene-vd_insertion-probs.csv +40 -0
  324. test/new-results/test/parameters/data/sw/dj_insertion_content.csv +5 -0
  325. test/new-results/test/parameters/data/sw/fv_insertion-probs.csv +3 -0
  326. test/new-results/test/parameters/data/sw/germline-sets/igh/extras.csv +26 -0
  327. test/new-results/test/parameters/data/sw/germline-sets/igh/ighd.fasta +44 -0
  328. test/new-results/test/parameters/data/sw/germline-sets/igh/ighj.fasta +14 -0
  329. test/new-results/test/parameters/data/sw/germline-sets/igh/ighv.fasta +36 -0
  330. test/new-results/test/parameters/data/sw/hmms/IGHD1-1_star_01.yaml +450 -0
  331. test/new-results/test/parameters/data/sw/hmms/IGHD1-20_star_01.yaml +449 -0
  332. test/new-results/test/parameters/data/sw/hmms/IGHD1-26_star_01.yaml +512 -0
  333. test/new-results/test/parameters/data/sw/hmms/IGHD2-15_star_01.yaml +744 -0
  334. test/new-results/test/parameters/data/sw/hmms/IGHD2-21_star_01.yaml +681 -0
  335. test/new-results/test/parameters/data/sw/hmms/IGHD2-21_star_02.yaml +681 -0
  336. test/new-results/test/parameters/data/sw/hmms/IGHD2-2_star_01.yaml +743 -0
  337. test/new-results/test/parameters/data/sw/hmms/IGHD2-8_star_01.yaml +744 -0
  338. test/new-results/test/parameters/data/sw/hmms/IGHD2-8_star_02.yaml +743 -0
  339. test/new-results/test/parameters/data/sw/hmms/IGHD3-10_star_01.yaml +743 -0
  340. test/new-results/test/parameters/data/sw/hmms/IGHD3-10_star_03.yaml +744 -0
  341. test/new-results/test/parameters/data/sw/hmms/IGHD3-16_star_02.yaml +869 -0
  342. test/new-results/test/parameters/data/sw/hmms/IGHD3-16_star_03.yaml +869 -0
  343. test/new-results/test/parameters/data/sw/hmms/IGHD3-22_star_01.yaml +743 -0
  344. test/new-results/test/parameters/data/sw/hmms/IGHD3-3_star_01.yaml +744 -0
  345. test/new-results/test/parameters/data/sw/hmms/IGHD4-17_star_01.yaml +429 -0
  346. test/new-results/test/parameters/data/sw/hmms/IGHD4-4_star_01.yaml +428 -0
  347. test/new-results/test/parameters/data/sw/hmms/IGHD5-5_star_01.yaml +513 -0
  348. test/new-results/test/parameters/data/sw/hmms/IGHD6-13_star_01.yaml +533 -0
  349. test/new-results/test/parameters/data/sw/hmms/IGHD6-19_star_01.yaml +533 -0
  350. test/new-results/test/parameters/data/sw/hmms/IGHD6-25_star_01.yaml +470 -0
  351. test/new-results/test/parameters/data/sw/hmms/IGHD6-6_star_01.yaml +470 -0
  352. test/new-results/test/parameters/data/sw/hmms/IGHJ1_star_01.yaml +986 -0
  353. test/new-results/test/parameters/data/sw/hmms/IGHJ2_star_01.yaml +1006 -0
  354. test/new-results/test/parameters/data/sw/hmms/IGHJ3_star_02.yaml +946 -0
  355. test/new-results/test/parameters/data/sw/hmms/IGHJ4_star_02.yaml +906 -0
  356. test/new-results/test/parameters/data/sw/hmms/IGHJ5_star_02.yaml +966 -0
  357. test/new-results/test/parameters/data/sw/hmms/IGHJ6_star_02.yaml +1206 -0
  358. test/new-results/test/parameters/data/sw/hmms/IGHJ6_star_03.yaml +1206 -0
  359. test/new-results/test/parameters/data/sw/hmms/IGHV1-18_star_01.yaml +4484 -0
  360. test/new-results/test/parameters/data/sw/hmms/IGHV1-2_star_02.yaml +4484 -0
  361. test/new-results/test/parameters/data/sw/hmms/IGHV2-5_star_02.yaml +4560 -0
  362. test/new-results/test/parameters/data/sw/hmms/IGHV2-70D_star_04.yaml +4561 -0
  363. test/new-results/test/parameters/data/sw/hmms/IGHV3-11_star_04.yaml +4484 -0
  364. test/new-results/test/parameters/data/sw/hmms/IGHV3-23_star_01.yaml +4484 -0
  365. test/new-results/test/parameters/data/sw/hmms/IGHV3-23_star_03.yaml +4484 -0
  366. test/new-results/test/parameters/data/sw/hmms/IGHV3-30_star_04.yaml +4484 -0
  367. test/new-results/test/parameters/data/sw/hmms/IGHV3-48_star_03.yaml +4484 -0
  368. test/new-results/test/parameters/data/sw/hmms/IGHV3-66_star_02.yaml +4439 -0
  369. test/new-results/test/parameters/data/sw/hmms/IGHV3-69-1_star_02.yaml +4439 -0
  370. test/new-results/test/parameters/data/sw/hmms/IGHV3-7_star_05.yaml +4484 -0
  371. test/new-results/test/parameters/data/sw/hmms/IGHV3-9_star_02.yaml +4516 -0
  372. test/new-results/test/parameters/data/sw/hmms/IGHV4-34_star_01.yaml +4439 -0
  373. test/new-results/test/parameters/data/sw/hmms/IGHV4-39_star_09.yaml +4529 -0
  374. test/new-results/test/parameters/data/sw/hmms/IGHV4-4_star_09.yaml +4438 -0
  375. test/new-results/test/parameters/data/sw/hmms/IGHV4-61_star_01.yaml +4529 -0
  376. test/new-results/test/parameters/data/sw/hmms/IGHV5-51_star_01.yaml +4484 -0
  377. test/new-results/test/parameters/data/sw/j-mean-mute-freqs.csv +43 -0
  378. test/new-results/test/parameters/data/sw/j-mean-n-muted.csv +25 -0
  379. test/new-results/test/parameters/data/sw/j_gene-dj_insertion-probs.csv +32 -0
  380. test/new-results/test/parameters/data/sw/j_gene-j_3p_del-probs.csv +11 -0
  381. test/new-results/test/parameters/data/sw/j_gene-j_5p_del-probs.csv +31 -0
  382. test/new-results/test/parameters/data/sw/j_gene-probs.csv +8 -0
  383. test/new-results/test/parameters/data/sw/jf_insertion-probs.csv +3 -0
  384. test/new-results/test/parameters/data/sw/mute-freqs/IGHD1-1_star_01.csv +4 -0
  385. test/new-results/test/parameters/data/sw/mute-freqs/IGHD1-20_star_01.csv +8 -0
  386. test/new-results/test/parameters/data/sw/mute-freqs/IGHD1-26_star_01.csv +8 -0
  387. test/new-results/test/parameters/data/sw/mute-freqs/IGHD2-15_star_01.csv +32 -0
  388. test/new-results/test/parameters/data/sw/mute-freqs/IGHD2-21_star_01.csv +28 -0
  389. test/new-results/test/parameters/data/sw/mute-freqs/IGHD2-21_star_02.csv +27 -0
  390. test/new-results/test/parameters/data/sw/mute-freqs/IGHD2-2_star_01.csv +27 -0
  391. test/new-results/test/parameters/data/sw/mute-freqs/IGHD2-8_star_01.csv +32 -0
  392. test/new-results/test/parameters/data/sw/mute-freqs/IGHD2-8_star_02.csv +12 -0
  393. test/new-results/test/parameters/data/sw/mute-freqs/IGHD3-10_star_01.csv +29 -0
  394. test/new-results/test/parameters/data/sw/mute-freqs/IGHD3-10_star_03.csv +14 -0
  395. test/new-results/test/parameters/data/sw/mute-freqs/IGHD3-16_star_02.csv +34 -0
  396. test/new-results/test/parameters/data/sw/mute-freqs/IGHD3-16_star_03.csv +20 -0
  397. test/new-results/test/parameters/data/sw/mute-freqs/IGHD3-22_star_01.csv +30 -0
  398. test/new-results/test/parameters/data/sw/mute-freqs/IGHD3-3_star_01.csv +21 -0
  399. test/new-results/test/parameters/data/sw/mute-freqs/IGHD4-17_star_01.csv +12 -0
  400. test/new-results/test/parameters/data/sw/mute-freqs/IGHD4-4_star_01.csv +9 -0
  401. test/new-results/test/parameters/data/sw/mute-freqs/IGHD5-5_star_01.csv +9 -0
  402. test/new-results/test/parameters/data/sw/mute-freqs/IGHD6-13_star_01.csv +20 -0
  403. test/new-results/test/parameters/data/sw/mute-freqs/IGHD6-19_star_01.csv +21 -0
  404. test/new-results/test/parameters/data/sw/mute-freqs/IGHD6-25_star_01.csv +12 -0
  405. test/new-results/test/parameters/data/sw/mute-freqs/IGHD6-6_star_01.csv +19 -0
  406. test/new-results/test/parameters/data/sw/mute-freqs/IGHJ1_star_01.csv +52 -0
  407. test/new-results/test/parameters/data/sw/mute-freqs/IGHJ2_star_01.csv +54 -0
  408. test/new-results/test/parameters/data/sw/mute-freqs/IGHJ3_star_02.csv +51 -0
  409. test/new-results/test/parameters/data/sw/mute-freqs/IGHJ4_star_02.csv +49 -0
  410. test/new-results/test/parameters/data/sw/mute-freqs/IGHJ5_star_02.csv +51 -0
  411. test/new-results/test/parameters/data/sw/mute-freqs/IGHJ6_star_02.csv +33 -0
  412. test/new-results/test/parameters/data/sw/mute-freqs/IGHJ6_star_03.csv +40 -0
  413. test/new-results/test/parameters/data/sw/mute-freqs/IGHV1-18_star_01.csv +297 -0
  414. test/new-results/test/parameters/data/sw/mute-freqs/IGHV1-2_star_02.csv +296 -0
  415. test/new-results/test/parameters/data/sw/mute-freqs/IGHV2-5_star_02.csv +66 -0
  416. test/new-results/test/parameters/data/sw/mute-freqs/IGHV2-70D_star_04.csv +89 -0
  417. test/new-results/test/parameters/data/sw/mute-freqs/IGHV3-11_star_04.csv +73 -0
  418. test/new-results/test/parameters/data/sw/mute-freqs/IGHV3-23_star_01.csv +297 -0
  419. test/new-results/test/parameters/data/sw/mute-freqs/IGHV3-23_star_03.csv +32 -0
  420. test/new-results/test/parameters/data/sw/mute-freqs/IGHV3-30_star_04.csv +38 -0
  421. test/new-results/test/parameters/data/sw/mute-freqs/IGHV3-48_star_03.csv +38 -0
  422. test/new-results/test/parameters/data/sw/mute-freqs/IGHV3-66_star_02.csv +292 -0
  423. test/new-results/test/parameters/data/sw/mute-freqs/IGHV3-69-1_star_02.csv +38 -0
  424. test/new-results/test/parameters/data/sw/mute-freqs/IGHV3-7_star_05.csv +70 -0
  425. test/new-results/test/parameters/data/sw/mute-freqs/IGHV3-9_star_02.csv +40 -0
  426. test/new-results/test/parameters/data/sw/mute-freqs/IGHV4-34_star_01.csv +40 -0
  427. test/new-results/test/parameters/data/sw/mute-freqs/IGHV4-39_star_09.csv +40 -0
  428. test/new-results/test/parameters/data/sw/mute-freqs/IGHV4-4_star_09.csv +59 -0
  429. test/new-results/test/parameters/data/sw/mute-freqs/IGHV4-61_star_01.csv +300 -0
  430. test/new-results/test/parameters/data/sw/mute-freqs/IGHV5-51_star_01.csv +296 -0
  431. test/new-results/test/parameters/data/sw/seq_content.csv +5 -0
  432. test/new-results/test/parameters/data/sw/v-mean-mute-freqs.csv +43 -0
  433. test/new-results/test/parameters/data/sw/v-mean-n-muted.csv +122 -0
  434. test/new-results/test/parameters/data/sw/v_gene-probs.csv +19 -0
  435. test/new-results/test/parameters/data/sw/v_gene-v_3p_del-probs.csv +25 -0
  436. test/new-results/test/parameters/data/sw/v_gene-v_5p_del-probs.csv +29 -0
  437. test/new-results/test/parameters/data/sw/vd_insertion_content.csv +5 -0
  438. test/new-results/test/parameters/data/sw-cache.yaml +1 -0
  439. test/new-results/test/parameters/simu/hmm/all-mean-mute-freqs.csv +3 -3
  440. test/new-results/test/parameters/simu/hmm/all-mean-n-muted.csv +11 -11
  441. test/new-results/test/parameters/simu/hmm/all-probs.csv +13 -3
  442. test/new-results/test/parameters/simu/hmm/cluster_size.csv +1 -1
  443. test/new-results/test/parameters/simu/hmm/d-mean-mute-freqs.csv +6 -6
  444. test/new-results/test/parameters/simu/hmm/d-mean-n-muted.csv +3 -3
  445. test/new-results/test/parameters/simu/hmm/d_gene-d_3p_del-probs.csv +6 -1
  446. test/new-results/test/parameters/simu/hmm/d_gene-d_5p_del-probs.csv +9 -2
  447. test/new-results/test/parameters/simu/hmm/d_gene-probs.csv +5 -1
  448. test/new-results/test/parameters/simu/hmm/d_gene-vd_insertion-probs.csv +10 -2
  449. test/new-results/test/parameters/simu/hmm/dj_insertion_content.csv +4 -4
  450. test/new-results/test/parameters/simu/hmm/fv_insertion-probs.csv +3 -2
  451. test/new-results/test/parameters/simu/hmm/germline-sets/igh/extras.csv +6 -0
  452. test/new-results/test/parameters/simu/hmm/germline-sets/igh/ighd.fasta +8 -0
  453. test/new-results/test/parameters/simu/hmm/germline-sets/igh/ighj.fasta +2 -0
  454. test/new-results/test/parameters/simu/hmm/germline-sets/igh/ighv.fasta +10 -0
  455. test/new-results/test/parameters/simu/hmm/hmms/IGHD1-20_star_01.yaml +449 -0
  456. test/new-results/test/parameters/simu/hmm/hmms/IGHD3-16_star_02.yaml +870 -0
  457. test/new-results/test/parameters/simu/hmm/hmms/IGHD3-22_star_01.yaml +744 -0
  458. test/new-results/test/parameters/simu/hmm/hmms/IGHD6-13_star_01.yaml +267 -268
  459. test/new-results/test/parameters/simu/hmm/hmms/IGHD6-19_star_01.yaml +534 -0
  460. test/new-results/test/parameters/simu/hmm/hmms/IGHJ1_star_01.yaml +986 -0
  461. test/new-results/test/parameters/simu/hmm/hmms/IGHJ4_star_02.yaml +306 -306
  462. test/new-results/test/parameters/simu/hmm/hmms/IGHJ6_star_02.yaml +284 -284
  463. test/new-results/test/parameters/simu/hmm/hmms/IGHV1-18_star_01.yaml +4484 -0
  464. test/new-results/test/parameters/simu/hmm/hmms/IGHV3-23_star_01.yaml +4484 -0
  465. test/new-results/test/parameters/simu/hmm/hmms/IGHV3-66_star_02.yaml +1191 -1191
  466. test/new-results/test/parameters/simu/hmm/hmms/IGHV3-7_star_05.yaml +2 -2
  467. test/new-results/test/parameters/simu/hmm/hmms/IGHV4-4_star_09.yaml +4438 -0
  468. test/new-results/test/parameters/simu/hmm/hmms/IGHV4-61_star_01.yaml +4529 -0
  469. test/new-results/test/parameters/simu/hmm/hmms/IGHV5-51_star_01.yaml +4484 -0
  470. test/new-results/test/parameters/simu/hmm/j-mean-mute-freqs.csv +5 -5
  471. test/new-results/test/parameters/simu/hmm/j-mean-n-muted.csv +4 -4
  472. test/new-results/test/parameters/simu/hmm/j_gene-dj_insertion-probs.csv +9 -2
  473. test/new-results/test/parameters/simu/hmm/j_gene-j_3p_del-probs.csv +2 -1
  474. test/new-results/test/parameters/simu/hmm/j_gene-j_5p_del-probs.csv +7 -2
  475. test/new-results/test/parameters/simu/hmm/j_gene-probs.csv +2 -1
  476. test/new-results/test/parameters/simu/hmm/jf_insertion-probs.csv +1 -1
  477. test/new-results/test/parameters/simu/hmm/mute-freqs/IGHD1-20_star_01.csv +9 -0
  478. test/new-results/test/parameters/simu/hmm/mute-freqs/IGHD3-16_star_02.csv +30 -0
  479. test/new-results/test/parameters/simu/hmm/mute-freqs/IGHD3-22_star_01.csv +32 -0
  480. test/new-results/test/parameters/simu/hmm/mute-freqs/IGHD6-13_star_01.csv +16 -13
  481. test/new-results/test/parameters/simu/hmm/mute-freqs/IGHD6-19_star_01.csv +22 -0
  482. test/new-results/test/parameters/simu/hmm/mute-freqs/IGHJ1_star_01.csv +50 -0
  483. test/new-results/test/parameters/simu/hmm/mute-freqs/IGHJ4_star_02.csv +44 -40
  484. test/new-results/test/parameters/simu/hmm/mute-freqs/IGHJ6_star_02.csv +2 -0
  485. test/new-results/test/parameters/simu/hmm/mute-freqs/IGHV1-18_star_01.csv +297 -0
  486. test/new-results/test/parameters/simu/hmm/mute-freqs/IGHV3-23_star_01.csv +297 -0
  487. test/new-results/test/parameters/simu/hmm/mute-freqs/IGHV3-66_star_02.csv +293 -291
  488. test/new-results/test/parameters/simu/hmm/mute-freqs/IGHV4-4_star_09.csv +291 -0
  489. test/new-results/test/parameters/simu/hmm/mute-freqs/IGHV4-61_star_01.csv +300 -0
  490. test/new-results/test/parameters/simu/hmm/mute-freqs/IGHV5-51_star_01.csv +296 -0
  491. test/new-results/test/parameters/simu/hmm/seq_content.csv +4 -4
  492. test/new-results/test/parameters/simu/hmm/v-mean-mute-freqs.csv +3 -3
  493. test/new-results/test/parameters/simu/hmm/v-mean-n-muted.csv +7 -7
  494. test/new-results/test/parameters/simu/hmm/v_gene-probs.csv +6 -1
  495. test/new-results/test/parameters/simu/hmm/v_gene-v_3p_del-probs.csv +7 -1
  496. test/new-results/test/parameters/simu/hmm/v_gene-v_5p_del-probs.csv +6 -1
  497. test/new-results/test/parameters/simu/hmm/vd_insertion_content.csv +4 -4
  498. test/new-results/test/parameters/simu/sw/all-mean-mute-freqs.csv +3 -3
  499. test/new-results/test/parameters/simu/sw/all-mean-n-muted.csv +8 -8
  500. test/new-results/test/parameters/simu/sw/all-probs.csv +9 -1
  501. test/new-results/test/parameters/simu/sw/cluster_size.csv +1 -1
  502. test/new-results/test/parameters/simu/sw/d-mean-mute-freqs.csv +5 -5
  503. test/new-results/test/parameters/simu/sw/d-mean-n-muted.csv +3 -3
  504. test/new-results/test/parameters/simu/sw/d_gene-d_3p_del-probs.csv +7 -1
  505. test/new-results/test/parameters/simu/sw/d_gene-d_5p_del-probs.csv +7 -1
  506. test/new-results/test/parameters/simu/sw/d_gene-probs.csv +5 -1
  507. test/new-results/test/parameters/simu/sw/d_gene-vd_insertion-probs.csv +8 -1
  508. test/new-results/test/parameters/simu/sw/dj_insertion_content.csv +4 -4
  509. test/new-results/test/parameters/simu/sw/fv_insertion-probs.csv +1 -1
  510. test/new-results/test/parameters/simu/sw/germline-sets/igh/extras.csv +6 -0
  511. test/new-results/test/parameters/simu/sw/germline-sets/igh/ighd.fasta +8 -0
  512. test/new-results/test/parameters/simu/sw/germline-sets/igh/ighj.fasta +2 -0
  513. test/new-results/test/parameters/simu/sw/germline-sets/igh/ighv.fasta +10 -0
  514. test/new-results/test/parameters/simu/sw/hmms/IGHD1-20_star_01.yaml +449 -0
  515. test/new-results/test/parameters/simu/sw/hmms/IGHD3-16_star_02.yaml +870 -0
  516. test/new-results/test/parameters/simu/sw/hmms/IGHD3-22_star_01.yaml +744 -0
  517. test/new-results/test/parameters/simu/sw/hmms/IGHD6-13_star_01.yaml +267 -268
  518. test/new-results/test/parameters/simu/sw/hmms/IGHD6-19_star_01.yaml +534 -0
  519. test/new-results/test/parameters/simu/sw/hmms/IGHJ1_star_01.yaml +986 -0
  520. test/new-results/test/parameters/simu/sw/hmms/IGHJ4_star_02.yaml +306 -306
  521. test/new-results/test/parameters/simu/sw/hmms/IGHJ6_star_02.yaml +22 -22
  522. test/new-results/test/parameters/simu/sw/hmms/IGHV1-18_star_01.yaml +4484 -0
  523. test/new-results/test/parameters/simu/sw/hmms/IGHV3-23_star_01.yaml +4484 -0
  524. test/new-results/test/parameters/simu/sw/hmms/IGHV3-66_star_02.yaml +1191 -1191
  525. test/new-results/test/parameters/simu/sw/hmms/IGHV3-7_star_05.yaml +2 -2
  526. test/new-results/test/parameters/simu/sw/hmms/IGHV4-4_star_09.yaml +4438 -0
  527. test/new-results/test/parameters/simu/sw/hmms/IGHV4-61_star_01.yaml +4529 -0
  528. test/new-results/test/parameters/simu/sw/hmms/IGHV5-51_star_01.yaml +4484 -0
  529. test/new-results/test/parameters/simu/sw/j-mean-mute-freqs.csv +4 -4
  530. test/new-results/test/parameters/simu/sw/j-mean-n-muted.csv +3 -3
  531. test/new-results/test/parameters/simu/sw/j_gene-dj_insertion-probs.csv +7 -1
  532. test/new-results/test/parameters/simu/sw/j_gene-j_3p_del-probs.csv +2 -1
  533. test/new-results/test/parameters/simu/sw/j_gene-j_5p_del-probs.csv +7 -1
  534. test/new-results/test/parameters/simu/sw/j_gene-probs.csv +2 -1
  535. test/new-results/test/parameters/simu/sw/jf_insertion-probs.csv +1 -1
  536. test/new-results/test/parameters/simu/sw/mute-freqs/IGHD1-20_star_01.csv +9 -0
  537. test/new-results/test/parameters/simu/sw/mute-freqs/IGHD3-16_star_02.csv +30 -0
  538. test/new-results/test/parameters/simu/sw/mute-freqs/IGHD3-22_star_01.csv +32 -0
  539. test/new-results/test/parameters/simu/sw/mute-freqs/IGHD6-13_star_01.csv +16 -13
  540. test/new-results/test/parameters/simu/sw/mute-freqs/IGHD6-19_star_01.csv +20 -0
  541. test/new-results/test/parameters/simu/sw/mute-freqs/IGHJ1_star_01.csv +50 -0
  542. test/new-results/test/parameters/simu/sw/mute-freqs/IGHJ4_star_02.csv +48 -40
  543. test/new-results/test/parameters/simu/sw/mute-freqs/IGHV1-18_star_01.csv +297 -0
  544. test/new-results/test/parameters/simu/sw/mute-freqs/IGHV3-23_star_01.csv +297 -0
  545. test/new-results/test/parameters/simu/sw/mute-freqs/IGHV3-66_star_02.csv +293 -291
  546. test/new-results/test/parameters/simu/sw/mute-freqs/IGHV4-4_star_09.csv +291 -0
  547. test/new-results/test/parameters/simu/sw/mute-freqs/IGHV4-61_star_01.csv +300 -0
  548. test/new-results/test/parameters/simu/sw/mute-freqs/IGHV5-51_star_01.csv +296 -0
  549. test/new-results/test/parameters/simu/sw/seq_content.csv +4 -4
  550. test/new-results/test/parameters/simu/sw/v-mean-mute-freqs.csv +3 -3
  551. test/new-results/test/parameters/simu/sw/v-mean-n-muted.csv +7 -7
  552. test/new-results/test/parameters/simu/sw/v_gene-probs.csv +6 -1
  553. test/new-results/test/parameters/simu/sw/v_gene-v_3p_del-probs.csv +7 -1
  554. test/new-results/test/parameters/simu/sw/v_gene-v_5p_del-probs.csv +6 -1
  555. test/new-results/test/parameters/simu/sw/vd_insertion_content.csv +4 -4
  556. test/new-results/test/parameters/simu/sw-cache.yaml +1 -1
  557. test/new-results/test/parameters/simu/true/all-mean-mute-freqs.csv +43 -0
  558. test/new-results/test/parameters/simu/true/all-mean-n-muted.csv +155 -0
  559. test/new-results/test/parameters/simu/true/all-probs.csv +10 -0
  560. test/new-results/test/parameters/simu/true/cluster_size.csv +7 -0
  561. test/new-results/test/parameters/simu/true/d-mean-mute-freqs.csv +43 -0
  562. test/new-results/test/parameters/simu/true/d-mean-n-muted.csv +14 -0
  563. test/new-results/test/parameters/simu/true/d_gene-d_3p_del-probs.csv +9 -0
  564. test/new-results/test/parameters/simu/true/d_gene-d_5p_del-probs.csv +10 -0
  565. test/new-results/test/parameters/simu/true/d_gene-probs.csv +7 -0
  566. test/new-results/test/parameters/simu/true/d_gene-vd_insertion-probs.csv +10 -0
  567. test/new-results/test/parameters/simu/true/dj_insertion_content.csv +5 -0
  568. test/new-results/test/parameters/simu/true/fv_insertion-probs.csv +2 -0
  569. test/new-results/test/parameters/simu/true/germline-sets/igh/extras.csv +11 -0
  570. test/new-results/test/parameters/simu/true/germline-sets/igh/ighd.fasta +12 -0
  571. test/new-results/test/parameters/simu/true/germline-sets/igh/ighj.fasta +6 -0
  572. test/new-results/test/parameters/simu/true/germline-sets/igh/ighv.fasta +14 -0
  573. test/new-results/test/parameters/simu/true/j-mean-mute-freqs.csv +43 -0
  574. test/new-results/test/parameters/simu/true/j-mean-n-muted.csv +25 -0
  575. test/new-results/test/parameters/simu/true/j_gene-dj_insertion-probs.csv +7 -0
  576. test/new-results/test/parameters/simu/true/j_gene-j_3p_del-probs.csv +4 -0
  577. test/new-results/test/parameters/simu/true/j_gene-j_5p_del-probs.csv +9 -0
  578. test/new-results/test/parameters/simu/true/j_gene-probs.csv +4 -0
  579. test/new-results/test/parameters/simu/true/jf_insertion-probs.csv +2 -0
  580. test/new-results/test/parameters/simu/true/mute-freqs/IGHD1-20_star_01.csv +8 -0
  581. test/new-results/test/parameters/simu/true/mute-freqs/IGHD3-16_star_02.csv +30 -0
  582. test/new-results/test/parameters/simu/true/mute-freqs/IGHD3-22_star_01.csv +32 -0
  583. test/new-results/test/parameters/simu/true/mute-freqs/IGHD6-13_star_01.csv +22 -0
  584. test/new-results/test/parameters/simu/true/mute-freqs/IGHD6-19_star_01.csv +22 -0
  585. test/new-results/test/parameters/simu/true/mute-freqs/IGHD6-6_star_01.csv +13 -0
  586. test/new-results/test/parameters/simu/true/mute-freqs/IGHJ1_star_01.csv +50 -0
  587. test/new-results/test/parameters/simu/true/mute-freqs/IGHJ4_star_02.csv +45 -0
  588. test/new-results/test/parameters/simu/true/mute-freqs/IGHJ6_star_02.csv +47 -0
  589. test/new-results/test/parameters/simu/true/mute-freqs/IGHV1-18_star_01.csv +297 -0
  590. test/new-results/test/parameters/simu/true/mute-freqs/IGHV3-23_star_01.csv +297 -0
  591. test/new-results/test/parameters/simu/true/mute-freqs/IGHV3-66_star_02.csv +294 -0
  592. test/new-results/test/parameters/simu/true/mute-freqs/IGHV3-7_star_05.csv +297 -0
  593. test/new-results/test/parameters/simu/true/mute-freqs/IGHV4-4_star_09.csv +291 -0
  594. test/new-results/test/parameters/simu/true/mute-freqs/IGHV4-61_star_01.csv +300 -0
  595. test/new-results/test/parameters/simu/true/mute-freqs/IGHV5-51_star_01.csv +296 -0
  596. test/new-results/test/parameters/simu/true/seq_content.csv +5 -0
  597. test/new-results/test/parameters/simu/true/v-mean-mute-freqs.csv +43 -0
  598. test/new-results/test/parameters/simu/true/v-mean-n-muted.csv +122 -0
  599. test/new-results/test/parameters/simu/true/v_gene-probs.csv +8 -0
  600. test/new-results/test/parameters/simu/true/v_gene-v_3p_del-probs.csv +9 -0
  601. test/new-results/test/parameters/simu/true/v_gene-v_5p_del-probs.csv +8 -0
  602. test/new-results/test/parameters/simu/true/vd_insertion_content.csv +5 -0
  603. test/new-results/test/simu.yaml +1 -0
  604. test/new-results/test.log +273 -24
  605. test/new-results/vsearch-partition-new-simu.yaml +1 -0
  606. test/paired/new-results/partition-new-simu/fasttree/iclust-0/log +2 -2
  607. test/paired/new-results/partition-new-simu/fasttree/iclust-1/log +4 -4
  608. test/paired/new-results/partition-new-simu/fasttree/iclust-2/log +4 -4
  609. test/paired/new-results/partition-new-simu/igh+igk/partition-igh/fasttree/iclust-1/log +4 -4
  610. test/paired/new-results/partition-new-simu-annotation-performance/plots/flcount-matrix.svg +107 -107
  611. test/paired/new-results/partition-new-simu-annotation-performance/plots/func-non-func-per-drop-log.svg +83 -83
  612. test/paired/new-results/partition-new-simu-annotation-performance/plots/func-non-func-per-drop.svg +61 -61
  613. test/paired/new-results/partition-new-simu-annotation-performance/plots/paired-seqs-per-seq-after.svg +18 -18
  614. test/paired/new-results/partition-new-simu-annotation-performance/plots/paired-seqs-per-seq-before.svg +24 -24
  615. test/paired/new-results/partition-new-simu-annotation-performance/plots/pseq-matrix.svg +35 -35
  616. test/paired/new-results/partition-new-simu-annotation-performance/plots/seqs-per-droplet.svg +22 -22
  617. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-correct-family.svg +45 -45
  618. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-correct.svg +45 -45
  619. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-mispaired.svg +45 -45
  620. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-multiple.svg +15 -15
  621. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-near-family.svg +15 -15
  622. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-total.svg +47 -47
  623. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-unpaired.svg +48 -48
  624. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance.svg +27 -27
  625. test/paired/new-results/run-times.csv +4 -3
  626. test/paired/new-results/subset-partition-new-simu/isub-0/partition.log +1 -1
  627. test/paired/new-results/subset-partition-new-simu/isub-1/partition.log +7 -7
  628. test/paired/new-results/subset-partition-new-simu/merged-partition.log +3 -3
  629. test/paired/new-results/subset-partition-new-simu/merged-subsets/parameters/igh/sw-cache.yaml +1 -1
  630. test/paired/new-results/subset-partition-new-simu/merged-subsets/parameters/igk/sw-cache.yaml +1 -1
  631. test/paired/new-results/subset-partition-new-simu/merged-subsets/parameters/igl/sw-cache.yaml +1 -1
  632. test/paired/new-results/test/simu/all-seqs.fa +182 -0
  633. test/paired/new-results/test/simu/igh+igk/igh.yaml +1 -0
  634. test/paired/new-results/test/simu/igh+igk/igk.yaml +1 -0
  635. test/paired/new-results/test/simu/igh+igl/igh.yaml +1 -0
  636. test/paired/new-results/test/simu/igh+igl/igl.yaml +1 -0
  637. test/paired/new-results/test/simu/igh.yaml +1 -0
  638. test/paired/new-results/test/simu/igk.yaml +1 -0
  639. test/paired/new-results/test/simu/igl.yaml +1 -0
  640. test/paired/new-results/test/simu/meta.yaml +1 -0
  641. test/paired/new-results/test.log +215 -33
  642. test/test.py +6 -0
  643. test/trees.nwk +100 -0
  644. {partis_bcr-1.0.11.post1.dev1.data → partis_bcr-1.0.11.post1.dev7.data}/scripts/cf-alleles.py +0 -0
  645. {partis_bcr-1.0.11.post1.dev1.data → partis_bcr-1.0.11.post1.dev7.data}/scripts/cf-germlines.py +0 -0
  646. {partis_bcr-1.0.11.post1.dev1.data → partis_bcr-1.0.11.post1.dev7.data}/scripts/compare-plotdirs.py +0 -0
  647. {partis_bcr-1.0.11.post1.dev1.data → partis_bcr-1.0.11.post1.dev7.data}/scripts/extract-pairing-info.py +0 -0
  648. {partis_bcr-1.0.11.post1.dev1.data → partis_bcr-1.0.11.post1.dev7.data}/scripts/gctree-run.py +0 -0
  649. {partis_bcr-1.0.11.post1.dev1.data → partis_bcr-1.0.11.post1.dev7.data}/scripts/get-naive-probabilities.py +0 -0
  650. {partis_bcr-1.0.11.post1.dev1.data → partis_bcr-1.0.11.post1.dev7.data}/scripts/parse-output.py +0 -0
  651. {partis_bcr-1.0.11.post1.dev1.data → partis_bcr-1.0.11.post1.dev7.data}/scripts/split-loci.py +0 -0
  652. {partis_bcr-1.0.11.post1.dev1.dist-info → partis_bcr-1.0.11.post1.dev7.dist-info}/WHEEL +0 -0
  653. {partis_bcr-1.0.11.post1.dev1.dist-info → partis_bcr-1.0.11.post1.dev7.dist-info}/entry_points.txt +0 -0
  654. {partis_bcr-1.0.11.post1.dev1.dist-info → partis_bcr-1.0.11.post1.dev7.dist-info}/licenses/COPYING +0 -0
  655. {partis_bcr-1.0.11.post1.dev1.dist-info → partis_bcr-1.0.11.post1.dev7.dist-info}/top_level.txt +0 -0
test/new-results/test/parameters/data/hmm/hmms/IGHV2-5_star_02.yaml ADDED
@@ -0,0 +1,4560 @@
1
+ !!python/object:python.hmmwriter.HMM
2
+ extras:
3
+ gene_prob: 0.021739130434782608
4
+ overall_mute_freq: 0.08760869565217394
5
+ per_gene_mute_freq: 0.10169323950166793
6
+ name: IGHV2-5_star_02
7
+ states:
8
+ - !!python/object:python.hmmwriter.State
9
+ emissions: null
10
+ extras: {}
11
+ name: init
12
+ transitions:
13
+ IGHV2-5_star_02_0: 0.6666666666666666
14
+ insert_left_N: 0.33333333333333337
15
+ - !!python/object:python.hmmwriter.State
16
+ emissions:
17
+ probs:
18
+ A: 0.25
19
+ C: 0.25
20
+ G: 0.25
21
+ T: 0.25
22
+ track: nukes
23
+ extras:
24
+ ambiguous_char: N
25
+ ambiguous_emission_prob: 0.25
26
+ germline: N
27
+ name: insert_left_N
28
+ transitions:
29
+ IGHV2-5_star_02_0: 0.6666666666666666
30
+ insert_left_N: 0.33333333333333337
31
+ - !!python/object:python.hmmwriter.State
32
+ emissions:
33
+ probs:
34
+ A: 0.03333333333333333
35
+ C: 0.9
36
+ G: 0.03333333333333333
37
+ T: 0.03333333333333333
38
+ track: nukes
39
+ extras:
40
+ ambiguous_char: N
41
+ ambiguous_emission_prob: 0.25
42
+ germline: C
43
+ name: IGHV2-5_star_02_0
44
+ transitions:
45
+ IGHV2-5_star_02_1: 1.0
46
+ - !!python/object:python.hmmwriter.State
47
+ emissions:
48
+ probs:
49
+ A: 0.9
50
+ C: 0.03333333333333333
51
+ G: 0.03333333333333333
52
+ T: 0.03333333333333333
53
+ track: nukes
54
+ extras:
55
+ ambiguous_char: N
56
+ ambiguous_emission_prob: 0.25
57
+ germline: A
58
+ name: IGHV2-5_star_02_1
59
+ transitions:
60
+ IGHV2-5_star_02_2: 1.0
61
+ - !!python/object:python.hmmwriter.State
62
+ emissions:
63
+ probs:
64
+ A: 0.03333333333333333
65
+ C: 0.03333333333333333
66
+ G: 0.9
67
+ T: 0.03333333333333333
68
+ track: nukes
69
+ extras:
70
+ ambiguous_char: N
71
+ ambiguous_emission_prob: 0.25
72
+ germline: G
73
+ name: IGHV2-5_star_02_2
74
+ transitions:
75
+ IGHV2-5_star_02_3: 1.0
76
+ - !!python/object:python.hmmwriter.State
77
+ emissions:
78
+ probs:
79
+ A: 0.9
80
+ C: 0.03333333333333333
81
+ G: 0.03333333333333333
82
+ T: 0.03333333333333333
83
+ track: nukes
84
+ extras:
85
+ ambiguous_char: N
86
+ ambiguous_emission_prob: 0.25
87
+ germline: A
88
+ name: IGHV2-5_star_02_3
89
+ transitions:
90
+ IGHV2-5_star_02_4: 1.0
91
+ - !!python/object:python.hmmwriter.State
92
+ emissions:
93
+ probs:
94
+ A: 0.03333333333333333
95
+ C: 0.03333333333333333
96
+ G: 0.03333333333333333
97
+ T: 0.9
98
+ track: nukes
99
+ extras:
100
+ ambiguous_char: N
101
+ ambiguous_emission_prob: 0.25
102
+ germline: T
103
+ name: IGHV2-5_star_02_4
104
+ transitions:
105
+ IGHV2-5_star_02_5: 1.0
106
+ - !!python/object:python.hmmwriter.State
107
+ emissions:
108
+ probs:
109
+ A: 0.03333333333333333
110
+ C: 0.9
111
+ G: 0.03333333333333333
112
+ T: 0.03333333333333333
113
+ track: nukes
114
+ extras:
115
+ ambiguous_char: N
116
+ ambiguous_emission_prob: 0.25
117
+ germline: C
118
+ name: IGHV2-5_star_02_5
119
+ transitions:
120
+ IGHV2-5_star_02_6: 1.0
121
+ - !!python/object:python.hmmwriter.State
122
+ emissions:
123
+ probs:
124
+ A: 0.9
125
+ C: 0.03333333333333333
126
+ G: 0.03333333333333333
127
+ T: 0.03333333333333333
128
+ track: nukes
129
+ extras:
130
+ ambiguous_char: N
131
+ ambiguous_emission_prob: 0.25
132
+ germline: A
133
+ name: IGHV2-5_star_02_6
134
+ transitions:
135
+ IGHV2-5_star_02_7: 1.0
136
+ - !!python/object:python.hmmwriter.State
137
+ emissions:
138
+ probs:
139
+ A: 0.03333333333333333
140
+ C: 0.9
141
+ G: 0.03333333333333333
142
+ T: 0.03333333333333333
143
+ track: nukes
144
+ extras:
145
+ ambiguous_char: N
146
+ ambiguous_emission_prob: 0.25
147
+ germline: C
148
+ name: IGHV2-5_star_02_7
149
+ transitions:
150
+ IGHV2-5_star_02_8: 1.0
151
+ - !!python/object:python.hmmwriter.State
152
+ emissions:
153
+ probs:
154
+ A: 0.03333333333333333
155
+ C: 0.9
156
+ G: 0.03333333333333333
157
+ T: 0.03333333333333333
158
+ track: nukes
159
+ extras:
160
+ ambiguous_char: N
161
+ ambiguous_emission_prob: 0.25
162
+ germline: C
163
+ name: IGHV2-5_star_02_8
164
+ transitions:
165
+ IGHV2-5_star_02_9: 1.0
166
+ - !!python/object:python.hmmwriter.State
167
+ emissions:
168
+ probs:
169
+ A: 0.03333333333333333
170
+ C: 0.03333333333333333
171
+ G: 0.03333333333333333
172
+ T: 0.9
173
+ track: nukes
174
+ extras:
175
+ ambiguous_char: N
176
+ ambiguous_emission_prob: 0.25
177
+ germline: T
178
+ name: IGHV2-5_star_02_9
179
+ transitions:
180
+ IGHV2-5_star_02_10: 1.0
181
+ - !!python/object:python.hmmwriter.State
182
+ emissions:
183
+ probs:
184
+ A: 0.03333333333333333
185
+ C: 0.03333333333333333
186
+ G: 0.03333333333333333
187
+ T: 0.9
188
+ track: nukes
189
+ extras:
190
+ ambiguous_char: N
191
+ ambiguous_emission_prob: 0.25
192
+ germline: T
193
+ name: IGHV2-5_star_02_10
194
+ transitions:
195
+ IGHV2-5_star_02_11: 1.0
196
+ - !!python/object:python.hmmwriter.State
197
+ emissions:
198
+ probs:
199
+ A: 0.03333333333333333
200
+ C: 0.03333333333333333
201
+ G: 0.9
202
+ T: 0.03333333333333333
203
+ track: nukes
204
+ extras:
205
+ ambiguous_char: N
206
+ ambiguous_emission_prob: 0.25
207
+ germline: G
208
+ name: IGHV2-5_star_02_11
209
+ transitions:
210
+ IGHV2-5_star_02_12: 1.0
211
+ - !!python/object:python.hmmwriter.State
212
+ emissions:
213
+ probs:
214
+ A: 0.9
215
+ C: 0.03333333333333333
216
+ G: 0.03333333333333333
217
+ T: 0.03333333333333333
218
+ track: nukes
219
+ extras:
220
+ ambiguous_char: N
221
+ ambiguous_emission_prob: 0.25
222
+ germline: A
223
+ name: IGHV2-5_star_02_12
224
+ transitions:
225
+ IGHV2-5_star_02_13: 1.0
226
+ - !!python/object:python.hmmwriter.State
227
+ emissions:
228
+ probs:
229
+ A: 0.9
230
+ C: 0.03333333333333333
231
+ G: 0.03333333333333333
232
+ T: 0.03333333333333333
233
+ track: nukes
234
+ extras:
235
+ ambiguous_char: N
236
+ ambiguous_emission_prob: 0.25
237
+ germline: A
238
+ name: IGHV2-5_star_02_13
239
+ transitions:
240
+ IGHV2-5_star_02_14: 1.0
241
+ - !!python/object:python.hmmwriter.State
242
+ emissions:
243
+ probs:
244
+ A: 0.03333333333333333
245
+ C: 0.03333333333333333
246
+ G: 0.9
247
+ T: 0.03333333333333333
248
+ track: nukes
249
+ extras:
250
+ ambiguous_char: N
251
+ ambiguous_emission_prob: 0.25
252
+ germline: G
253
+ name: IGHV2-5_star_02_14
254
+ transitions:
255
+ IGHV2-5_star_02_15: 1.0
256
+ - !!python/object:python.hmmwriter.State
257
+ emissions:
258
+ probs:
259
+ A: 0.03333333333333333
260
+ C: 0.03333333333333333
261
+ G: 0.9
262
+ T: 0.03333333333333333
263
+ track: nukes
264
+ extras:
265
+ ambiguous_char: N
266
+ ambiguous_emission_prob: 0.25
267
+ germline: G
268
+ name: IGHV2-5_star_02_15
269
+ transitions:
270
+ IGHV2-5_star_02_16: 1.0
271
+ - !!python/object:python.hmmwriter.State
272
+ emissions:
273
+ probs:
274
+ A: 0.9
275
+ C: 0.03333333333333333
276
+ G: 0.03333333333333333
277
+ T: 0.03333333333333333
278
+ track: nukes
279
+ extras:
280
+ ambiguous_char: N
281
+ ambiguous_emission_prob: 0.25
282
+ germline: A
283
+ name: IGHV2-5_star_02_16
284
+ transitions:
285
+ IGHV2-5_star_02_17: 1.0
286
+ - !!python/object:python.hmmwriter.State
287
+ emissions:
288
+ probs:
289
+ A: 0.03333333333333333
290
+ C: 0.03333333333333333
291
+ G: 0.9
292
+ T: 0.03333333333333333
293
+ track: nukes
294
+ extras:
295
+ ambiguous_char: N
296
+ ambiguous_emission_prob: 0.25
297
+ germline: G
298
+ name: IGHV2-5_star_02_17
299
+ transitions:
300
+ IGHV2-5_star_02_18: 1.0
301
+ - !!python/object:python.hmmwriter.State
302
+ emissions:
303
+ probs:
304
+ A: 0.03333333333333333
305
+ C: 0.03333333333333333
306
+ G: 0.03333333333333333
307
+ T: 0.9
308
+ track: nukes
309
+ extras:
310
+ ambiguous_char: N
311
+ ambiguous_emission_prob: 0.25
312
+ germline: T
313
+ name: IGHV2-5_star_02_18
314
+ transitions:
315
+ IGHV2-5_star_02_19: 1.0
316
+ - !!python/object:python.hmmwriter.State
317
+ emissions:
318
+ probs:
319
+ A: 0.03333333333333333
320
+ C: 0.9
321
+ G: 0.03333333333333333
322
+ T: 0.03333333333333333
323
+ track: nukes
324
+ extras:
325
+ ambiguous_char: N
326
+ ambiguous_emission_prob: 0.25
327
+ germline: C
328
+ name: IGHV2-5_star_02_19
329
+ transitions:
330
+ IGHV2-5_star_02_20: 1.0
331
+ - !!python/object:python.hmmwriter.State
332
+ emissions:
333
+ probs:
334
+ A: 0.03333333333333333
335
+ C: 0.03333333333333333
336
+ G: 0.03333333333333333
337
+ T: 0.9
338
+ track: nukes
339
+ extras:
340
+ ambiguous_char: N
341
+ ambiguous_emission_prob: 0.25
342
+ germline: T
343
+ name: IGHV2-5_star_02_20
344
+ transitions:
345
+ IGHV2-5_star_02_21: 1.0
346
+ - !!python/object:python.hmmwriter.State
347
+ emissions:
348
+ probs:
349
+ A: 0.03333333333333333
350
+ C: 0.03333333333333333
351
+ G: 0.9
352
+ T: 0.03333333333333333
353
+ track: nukes
354
+ extras:
355
+ ambiguous_char: N
356
+ ambiguous_emission_prob: 0.25
357
+ germline: G
358
+ name: IGHV2-5_star_02_21
359
+ transitions:
360
+ IGHV2-5_star_02_22: 1.0
361
+ - !!python/object:python.hmmwriter.State
362
+ emissions:
363
+ probs:
364
+ A: 0.03333333333333333
365
+ C: 0.03333333333333333
366
+ G: 0.9
367
+ T: 0.03333333333333333
368
+ track: nukes
369
+ extras:
370
+ ambiguous_char: N
371
+ ambiguous_emission_prob: 0.25
372
+ germline: G
373
+ name: IGHV2-5_star_02_22
374
+ transitions:
375
+ IGHV2-5_star_02_23: 1.0
376
+ - !!python/object:python.hmmwriter.State
377
+ emissions:
378
+ probs:
379
+ A: 0.03333333333333333
380
+ C: 0.03333333333333333
381
+ G: 0.03333333333333333
382
+ T: 0.9
383
+ track: nukes
384
+ extras:
385
+ ambiguous_char: N
386
+ ambiguous_emission_prob: 0.25
387
+ germline: T
388
+ name: IGHV2-5_star_02_23
389
+ transitions:
390
+ IGHV2-5_star_02_24: 1.0
391
+ - !!python/object:python.hmmwriter.State
392
+ emissions:
393
+ probs:
394
+ A: 0.03333333333333333
395
+ C: 0.9
396
+ G: 0.03333333333333333
397
+ T: 0.03333333333333333
398
+ track: nukes
399
+ extras:
400
+ ambiguous_char: N
401
+ ambiguous_emission_prob: 0.25
402
+ germline: C
403
+ name: IGHV2-5_star_02_24
404
+ transitions:
405
+ IGHV2-5_star_02_25: 1.0
406
+ - !!python/object:python.hmmwriter.State
407
+ emissions:
408
+ probs:
409
+ A: 0.03333333333333333
410
+ C: 0.9
411
+ G: 0.03333333333333333
412
+ T: 0.03333333333333333
413
+ track: nukes
414
+ extras:
415
+ ambiguous_char: N
416
+ ambiguous_emission_prob: 0.25
417
+ germline: C
418
+ name: IGHV2-5_star_02_25
419
+ transitions:
420
+ IGHV2-5_star_02_26: 1.0
421
+ - !!python/object:python.hmmwriter.State
422
+ emissions:
423
+ probs:
424
+ A: 0.03333333333333333
425
+ C: 0.03333333333333333
426
+ G: 0.03333333333333333
427
+ T: 0.9
428
+ track: nukes
429
+ extras:
430
+ ambiguous_char: N
431
+ ambiguous_emission_prob: 0.25
432
+ germline: T
433
+ name: IGHV2-5_star_02_26
434
+ transitions:
435
+ IGHV2-5_star_02_27: 1.0
436
+ - !!python/object:python.hmmwriter.State
437
+ emissions:
438
+ probs:
439
+ A: 0.9
440
+ C: 0.03333333333333333
441
+ G: 0.03333333333333333
442
+ T: 0.03333333333333333
443
+ track: nukes
444
+ extras:
445
+ ambiguous_char: N
446
+ ambiguous_emission_prob: 0.25
447
+ germline: A
448
+ name: IGHV2-5_star_02_27
449
+ transitions:
450
+ IGHV2-5_star_02_28: 1.0
451
+ - !!python/object:python.hmmwriter.State
452
+ emissions:
453
+ probs:
454
+ A: 0.03333333333333333
455
+ C: 0.9
456
+ G: 0.03333333333333333
457
+ T: 0.03333333333333333
458
+ track: nukes
459
+ extras:
460
+ ambiguous_char: N
461
+ ambiguous_emission_prob: 0.25
462
+ germline: C
463
+ name: IGHV2-5_star_02_28
464
+ transitions:
465
+ IGHV2-5_star_02_29: 1.0
466
+ - !!python/object:python.hmmwriter.State
467
+ emissions:
468
+ probs:
469
+ A: 0.03333333333333333
470
+ C: 0.03333333333333333
471
+ G: 0.9
472
+ T: 0.03333333333333333
473
+ track: nukes
474
+ extras:
475
+ ambiguous_char: N
476
+ ambiguous_emission_prob: 0.25
477
+ germline: G
478
+ name: IGHV2-5_star_02_29
479
+ transitions:
480
+ IGHV2-5_star_02_30: 1.0
481
+ - !!python/object:python.hmmwriter.State
482
+ emissions:
483
+ probs:
484
+ A: 0.03333333333333333
485
+ C: 0.9
486
+ G: 0.03333333333333333
487
+ T: 0.03333333333333333
488
+ track: nukes
489
+ extras:
490
+ ambiguous_char: N
491
+ ambiguous_emission_prob: 0.25
492
+ germline: C
493
+ name: IGHV2-5_star_02_30
494
+ transitions:
495
+ IGHV2-5_star_02_31: 1.0
496
+ - !!python/object:python.hmmwriter.State
497
+ emissions:
498
+ probs:
499
+ A: 0.03333333333333333
500
+ C: 0.03333333333333333
501
+ G: 0.03333333333333333
502
+ T: 0.9
503
+ track: nukes
504
+ extras:
505
+ ambiguous_char: N
506
+ ambiguous_emission_prob: 0.25
507
+ germline: T
508
+ name: IGHV2-5_star_02_31
509
+ transitions:
510
+ IGHV2-5_star_02_32: 1.0
511
+ - !!python/object:python.hmmwriter.State
512
+ emissions:
513
+ probs:
514
+ A: 0.03333333333333333
515
+ C: 0.03333333333333333
516
+ G: 0.9
517
+ T: 0.03333333333333333
518
+ track: nukes
519
+ extras:
520
+ ambiguous_char: N
521
+ ambiguous_emission_prob: 0.25
522
+ germline: G
523
+ name: IGHV2-5_star_02_32
524
+ transitions:
525
+ IGHV2-5_star_02_33: 1.0
526
+ - !!python/object:python.hmmwriter.State
527
+ emissions:
528
+ probs:
529
+ A: 0.03333333333333333
530
+ C: 0.03333333333333333
531
+ G: 0.9
532
+ T: 0.03333333333333333
533
+ track: nukes
534
+ extras:
535
+ ambiguous_char: N
536
+ ambiguous_emission_prob: 0.25
537
+ germline: G
538
+ name: IGHV2-5_star_02_33
539
+ transitions:
540
+ IGHV2-5_star_02_34: 1.0
541
+ - !!python/object:python.hmmwriter.State
542
+ emissions:
543
+ probs:
544
+ A: 0.03333333333333333
545
+ C: 0.03333333333333333
546
+ G: 0.03333333333333333
547
+ T: 0.9
548
+ track: nukes
549
+ extras:
550
+ ambiguous_char: N
551
+ ambiguous_emission_prob: 0.25
552
+ germline: T
553
+ name: IGHV2-5_star_02_34
554
+ transitions:
555
+ IGHV2-5_star_02_35: 1.0
556
+ - !!python/object:python.hmmwriter.State
557
+ emissions:
558
+ probs:
559
+ A: 0.03333333333333333
560
+ C: 0.03333333333333333
561
+ G: 0.9
562
+ T: 0.03333333333333333
563
+ track: nukes
564
+ extras:
565
+ ambiguous_char: N
566
+ ambiguous_emission_prob: 0.25
567
+ germline: G
568
+ name: IGHV2-5_star_02_35
569
+ transitions:
570
+ IGHV2-5_star_02_36: 1.0
571
+ - !!python/object:python.hmmwriter.State
572
+ emissions:
573
+ probs:
574
+ A: 0.9
575
+ C: 0.03333333333333333
576
+ G: 0.03333333333333333
577
+ T: 0.03333333333333333
578
+ track: nukes
579
+ extras:
580
+ ambiguous_char: N
581
+ ambiguous_emission_prob: 0.25
582
+ germline: A
583
+ name: IGHV2-5_star_02_36
584
+ transitions:
585
+ IGHV2-5_star_02_37: 1.0
586
+ - !!python/object:python.hmmwriter.State
587
+ emissions:
588
+ probs:
589
+ A: 0.9
590
+ C: 0.03333333333333333
591
+ G: 0.03333333333333333
592
+ T: 0.03333333333333333
593
+ track: nukes
594
+ extras:
595
+ ambiguous_char: N
596
+ ambiguous_emission_prob: 0.25
597
+ germline: A
598
+ name: IGHV2-5_star_02_37
599
+ transitions:
600
+ IGHV2-5_star_02_38: 1.0
601
+ - !!python/object:python.hmmwriter.State
602
+ emissions:
603
+ probs:
604
+ A: 0.9
605
+ C: 0.03333333333333333
606
+ G: 0.03333333333333333
607
+ T: 0.03333333333333333
608
+ track: nukes
609
+ extras:
610
+ ambiguous_char: N
611
+ ambiguous_emission_prob: 0.25
612
+ germline: A
613
+ name: IGHV2-5_star_02_38
614
+ transitions:
615
+ IGHV2-5_star_02_39: 1.0
616
+ - !!python/object:python.hmmwriter.State
617
+ emissions:
618
+ probs:
619
+ A: 0.03333333333333333
620
+ C: 0.9
621
+ G: 0.03333333333333333
622
+ T: 0.03333333333333333
623
+ track: nukes
624
+ extras:
625
+ ambiguous_char: N
626
+ ambiguous_emission_prob: 0.25
627
+ germline: C
628
+ name: IGHV2-5_star_02_39
629
+ transitions:
630
+ IGHV2-5_star_02_40: 1.0
631
+ - !!python/object:python.hmmwriter.State
632
+ emissions:
633
+ probs:
634
+ A: 0.03333333333333333
635
+ C: 0.9
636
+ G: 0.03333333333333333
637
+ T: 0.03333333333333333
638
+ track: nukes
639
+ extras:
640
+ ambiguous_char: N
641
+ ambiguous_emission_prob: 0.25
642
+ germline: C
643
+ name: IGHV2-5_star_02_40
644
+ transitions:
645
+ IGHV2-5_star_02_41: 1.0
646
+ - !!python/object:python.hmmwriter.State
647
+ emissions:
648
+ probs:
649
+ A: 0.03333333333333333
650
+ C: 0.9
651
+ G: 0.03333333333333333
652
+ T: 0.03333333333333333
653
+ track: nukes
654
+ extras:
655
+ ambiguous_char: N
656
+ ambiguous_emission_prob: 0.25
657
+ germline: C
658
+ name: IGHV2-5_star_02_41
659
+ transitions:
660
+ IGHV2-5_star_02_42: 1.0
661
+ - !!python/object:python.hmmwriter.State
662
+ emissions:
663
+ probs:
664
+ A: 0.9
665
+ C: 0.03333333333333333
666
+ G: 0.03333333333333333
667
+ T: 0.03333333333333333
668
+ track: nukes
669
+ extras:
670
+ ambiguous_char: N
671
+ ambiguous_emission_prob: 0.25
672
+ germline: A
673
+ name: IGHV2-5_star_02_42
674
+ transitions:
675
+ IGHV2-5_star_02_43: 1.0
676
+ - !!python/object:python.hmmwriter.State
677
+ emissions:
678
+ probs:
679
+ A: 0.03333333333333333
680
+ C: 0.9
681
+ G: 0.03333333333333333
682
+ T: 0.03333333333333333
683
+ track: nukes
684
+ extras:
685
+ ambiguous_char: N
686
+ ambiguous_emission_prob: 0.25
687
+ germline: C
688
+ name: IGHV2-5_star_02_43
689
+ transitions:
690
+ IGHV2-5_star_02_44: 1.0
691
+ - !!python/object:python.hmmwriter.State
692
+ emissions:
693
+ probs:
694
+ A: 0.9
695
+ C: 0.03333333333333333
696
+ G: 0.03333333333333333
697
+ T: 0.03333333333333333
698
+ track: nukes
699
+ extras:
700
+ ambiguous_char: N
701
+ ambiguous_emission_prob: 0.25
702
+ germline: A
703
+ name: IGHV2-5_star_02_44
704
+ transitions:
705
+ IGHV2-5_star_02_45: 1.0
706
+ - !!python/object:python.hmmwriter.State
707
+ emissions:
708
+ probs:
709
+ A: 0.03333333333333333
710
+ C: 0.9
711
+ G: 0.03333333333333333
712
+ T: 0.03333333333333333
713
+ track: nukes
714
+ extras:
715
+ ambiguous_char: N
716
+ ambiguous_emission_prob: 0.25
717
+ germline: C
718
+ name: IGHV2-5_star_02_45
719
+ transitions:
720
+ IGHV2-5_star_02_46: 1.0
721
+ - !!python/object:python.hmmwriter.State
722
+ emissions:
723
+ probs:
724
+ A: 0.9
725
+ C: 0.03333333333333333
726
+ G: 0.03333333333333333
727
+ T: 0.03333333333333333
728
+ track: nukes
729
+ extras:
730
+ ambiguous_char: N
731
+ ambiguous_emission_prob: 0.25
732
+ germline: A
733
+ name: IGHV2-5_star_02_46
734
+ transitions:
735
+ IGHV2-5_star_02_47: 1.0
736
+ - !!python/object:python.hmmwriter.State
737
+ emissions:
738
+ probs:
739
+ A: 0.03333333333333333
740
+ C: 0.03333333333333333
741
+ G: 0.9
742
+ T: 0.03333333333333333
743
+ track: nukes
744
+ extras:
745
+ ambiguous_char: N
746
+ ambiguous_emission_prob: 0.25
747
+ germline: G
748
+ name: IGHV2-5_star_02_47
749
+ transitions:
750
+ IGHV2-5_star_02_48: 1.0
751
+ - !!python/object:python.hmmwriter.State
752
+ emissions:
753
+ probs:
754
+ A: 0.9
755
+ C: 0.03333333333333333
756
+ G: 0.03333333333333333
757
+ T: 0.03333333333333333
758
+ track: nukes
759
+ extras:
760
+ ambiguous_char: N
761
+ ambiguous_emission_prob: 0.25
762
+ germline: A
763
+ name: IGHV2-5_star_02_48
764
+ transitions:
765
+ IGHV2-5_star_02_49: 1.0
766
+ - !!python/object:python.hmmwriter.State
767
+ emissions:
768
+ probs:
769
+ A: 0.03333333333333333
770
+ C: 0.9
771
+ G: 0.03333333333333333
772
+ T: 0.03333333333333333
773
+ track: nukes
774
+ extras:
775
+ ambiguous_char: N
776
+ ambiguous_emission_prob: 0.25
777
+ germline: C
778
+ name: IGHV2-5_star_02_49
779
+ transitions:
780
+ IGHV2-5_star_02_50: 1.0
781
+ - !!python/object:python.hmmwriter.State
782
+ emissions:
783
+ probs:
784
+ A: 0.03333333333333333
785
+ C: 0.9
786
+ G: 0.03333333333333333
787
+ T: 0.03333333333333333
788
+ track: nukes
789
+ extras:
790
+ ambiguous_char: N
791
+ ambiguous_emission_prob: 0.25
792
+ germline: C
793
+ name: IGHV2-5_star_02_50
794
+ transitions:
795
+ IGHV2-5_star_02_51: 1.0
796
+ - !!python/object:python.hmmwriter.State
797
+ emissions:
798
+ probs:
799
+ A: 0.03333333333333333
800
+ C: 0.9
801
+ G: 0.03333333333333333
802
+ T: 0.03333333333333333
803
+ track: nukes
804
+ extras:
805
+ ambiguous_char: N
806
+ ambiguous_emission_prob: 0.25
807
+ germline: C
808
+ name: IGHV2-5_star_02_51
809
+ transitions:
810
+ IGHV2-5_star_02_52: 1.0
811
+ - !!python/object:python.hmmwriter.State
812
+ emissions:
813
+ probs:
814
+ A: 0.03333333333333333
815
+ C: 0.03333333333333333
816
+ G: 0.03333333333333333
817
+ T: 0.9
818
+ track: nukes
819
+ extras:
820
+ ambiguous_char: N
821
+ ambiguous_emission_prob: 0.25
822
+ germline: T
823
+ name: IGHV2-5_star_02_52
824
+ transitions:
825
+ IGHV2-5_star_02_53: 1.0
826
+ - !!python/object:python.hmmwriter.State
827
+ emissions:
828
+ probs:
829
+ A: 0.03333333333333333
830
+ C: 0.9
831
+ G: 0.03333333333333333
832
+ T: 0.03333333333333333
833
+ track: nukes
834
+ extras:
835
+ ambiguous_char: N
836
+ ambiguous_emission_prob: 0.25
837
+ germline: C
838
+ name: IGHV2-5_star_02_53
839
+ transitions:
840
+ IGHV2-5_star_02_54: 1.0
841
+ - !!python/object:python.hmmwriter.State
842
+ emissions:
843
+ probs:
844
+ A: 0.9
845
+ C: 0.03333333333333333
846
+ G: 0.03333333333333333
847
+ T: 0.03333333333333333
848
+ track: nukes
849
+ extras:
850
+ ambiguous_char: N
851
+ ambiguous_emission_prob: 0.25
852
+ germline: A
853
+ name: IGHV2-5_star_02_54
854
+ transitions:
855
+ IGHV2-5_star_02_55: 1.0
856
+ - !!python/object:python.hmmwriter.State
857
+ emissions:
858
+ probs:
859
+ A: 0.03333333333333333
860
+ C: 0.9
861
+ G: 0.03333333333333333
862
+ T: 0.03333333333333333
863
+ track: nukes
864
+ extras:
865
+ ambiguous_char: N
866
+ ambiguous_emission_prob: 0.25
867
+ germline: C
868
+ name: IGHV2-5_star_02_55
869
+ transitions:
870
+ IGHV2-5_star_02_56: 1.0
871
+ - !!python/object:python.hmmwriter.State
872
+ emissions:
873
+ probs:
874
+ A: 0.03333333333333333
875
+ C: 0.03333333333333333
876
+ G: 0.9
877
+ T: 0.03333333333333333
878
+ track: nukes
879
+ extras:
880
+ ambiguous_char: N
881
+ ambiguous_emission_prob: 0.25
882
+ germline: G
883
+ name: IGHV2-5_star_02_56
884
+ transitions:
885
+ IGHV2-5_star_02_57: 1.0
886
+ - !!python/object:python.hmmwriter.State
887
+ emissions:
888
+ probs:
889
+ A: 0.03333333333333333
890
+ C: 0.9
891
+ G: 0.03333333333333333
892
+ T: 0.03333333333333333
893
+ track: nukes
894
+ extras:
895
+ ambiguous_char: N
896
+ ambiguous_emission_prob: 0.25
897
+ germline: C
898
+ name: IGHV2-5_star_02_57
899
+ transitions:
900
+ IGHV2-5_star_02_58: 1.0
901
+ - !!python/object:python.hmmwriter.State
902
+ emissions:
903
+ probs:
904
+ A: 0.03333333333333333
905
+ C: 0.03333333333333333
906
+ G: 0.03333333333333333
907
+ T: 0.9
908
+ track: nukes
909
+ extras:
910
+ ambiguous_char: N
911
+ ambiguous_emission_prob: 0.25
912
+ germline: T
913
+ name: IGHV2-5_star_02_58
914
+ transitions:
915
+ IGHV2-5_star_02_59: 1.0
916
+ - !!python/object:python.hmmwriter.State
917
+ emissions:
918
+ probs:
919
+ A: 0.03333333333333333
920
+ C: 0.03333333333333333
921
+ G: 0.9
922
+ T: 0.03333333333333333
923
+ track: nukes
924
+ extras:
925
+ ambiguous_char: N
926
+ ambiguous_emission_prob: 0.25
927
+ germline: G
928
+ name: IGHV2-5_star_02_59
929
+ transitions:
930
+ IGHV2-5_star_02_60: 1.0
931
+ - !!python/object:python.hmmwriter.State
932
+ emissions:
933
+ probs:
934
+ A: 0.9
935
+ C: 0.03333333333333333
936
+ G: 0.03333333333333333
937
+ T: 0.03333333333333333
938
+ track: nukes
939
+ extras:
940
+ ambiguous_char: N
941
+ ambiguous_emission_prob: 0.25
942
+ germline: A
943
+ name: IGHV2-5_star_02_60
944
+ transitions:
945
+ IGHV2-5_star_02_61: 1.0
946
+ - !!python/object:python.hmmwriter.State
947
+ emissions:
948
+ probs:
949
+ A: 0.03333333333333333
950
+ C: 0.9
951
+ G: 0.03333333333333333
952
+ T: 0.03333333333333333
953
+ track: nukes
954
+ extras:
955
+ ambiguous_char: N
956
+ ambiguous_emission_prob: 0.25
957
+ germline: C
958
+ name: IGHV2-5_star_02_61
959
+ transitions:
960
+ IGHV2-5_star_02_62: 1.0
961
+ - !!python/object:python.hmmwriter.State
962
+ emissions:
963
+ probs:
964
+ A: 0.03333333333333333
965
+ C: 0.9
966
+ G: 0.03333333333333333
967
+ T: 0.03333333333333333
968
+ track: nukes
969
+ extras:
970
+ ambiguous_char: N
971
+ ambiguous_emission_prob: 0.25
972
+ germline: C
973
+ name: IGHV2-5_star_02_62
974
+ transitions:
975
+ IGHV2-5_star_02_63: 1.0
976
+ - !!python/object:python.hmmwriter.State
977
+ emissions:
978
+ probs:
979
+ A: 0.03333333333333333
980
+ C: 0.03333333333333333
981
+ G: 0.03333333333333333
982
+ T: 0.9
983
+ track: nukes
984
+ extras:
985
+ ambiguous_char: N
986
+ ambiguous_emission_prob: 0.25
987
+ germline: T
988
+ name: IGHV2-5_star_02_63
989
+ transitions:
990
+ IGHV2-5_star_02_64: 1.0
991
+ - !!python/object:python.hmmwriter.State
992
+ emissions:
993
+ probs:
994
+ A: 0.03333333333333333
995
+ C: 0.03333333333333333
996
+ G: 0.9
997
+ T: 0.03333333333333333
998
+ track: nukes
999
+ extras:
1000
+ ambiguous_char: N
1001
+ ambiguous_emission_prob: 0.25
1002
+ germline: G
1003
+ name: IGHV2-5_star_02_64
1004
+ transitions:
1005
+ IGHV2-5_star_02_65: 1.0
1006
+ - !!python/object:python.hmmwriter.State
1007
+ emissions:
1008
+ probs:
1009
+ A: 0.03333333333333333
1010
+ C: 0.9
1011
+ G: 0.03333333333333333
1012
+ T: 0.03333333333333333
1013
+ track: nukes
1014
+ extras:
1015
+ ambiguous_char: N
1016
+ ambiguous_emission_prob: 0.25
1017
+ germline: C
1018
+ name: IGHV2-5_star_02_65
1019
+ transitions:
1020
+ IGHV2-5_star_02_66: 1.0
1021
+ - !!python/object:python.hmmwriter.State
1022
+ emissions:
1023
+ probs:
1024
+ A: 0.9
1025
+ C: 0.03333333333333333
1026
+ G: 0.03333333333333333
1027
+ T: 0.03333333333333333
1028
+ track: nukes
1029
+ extras:
1030
+ ambiguous_char: N
1031
+ ambiguous_emission_prob: 0.25
1032
+ germline: A
1033
+ name: IGHV2-5_star_02_66
1034
+ transitions:
1035
+ IGHV2-5_star_02_67: 1.0
1036
+ - !!python/object:python.hmmwriter.State
1037
+ emissions:
1038
+ probs:
1039
+ A: 0.03333333333333333
1040
+ C: 0.9
1041
+ G: 0.03333333333333333
1042
+ T: 0.03333333333333333
1043
+ track: nukes
1044
+ extras:
1045
+ ambiguous_char: N
1046
+ ambiguous_emission_prob: 0.25
1047
+ germline: C
1048
+ name: IGHV2-5_star_02_67
1049
+ transitions:
1050
+ IGHV2-5_star_02_68: 1.0
1051
+ - !!python/object:python.hmmwriter.State
1052
+ emissions:
1053
+ probs:
1054
+ A: 0.03333333333333333
1055
+ C: 0.9
1056
+ G: 0.03333333333333333
1057
+ T: 0.03333333333333333
1058
+ track: nukes
1059
+ extras:
1060
+ ambiguous_char: N
1061
+ ambiguous_emission_prob: 0.25
1062
+ germline: C
1063
+ name: IGHV2-5_star_02_68
1064
+ transitions:
1065
+ IGHV2-5_star_02_69: 1.0
1066
+ - !!python/object:python.hmmwriter.State
1067
+ emissions:
1068
+ probs:
1069
+ A: 0.03333333333333333
1070
+ C: 0.03333333333333333
1071
+ G: 0.03333333333333333
1072
+ T: 0.9
1073
+ track: nukes
1074
+ extras:
1075
+ ambiguous_char: N
1076
+ ambiguous_emission_prob: 0.25
1077
+ germline: T
1078
+ name: IGHV2-5_star_02_69
1079
+ transitions:
1080
+ IGHV2-5_star_02_70: 1.0
1081
+ - !!python/object:python.hmmwriter.State
1082
+ emissions:
1083
+ probs:
1084
+ A: 0.03333333333333333
1085
+ C: 0.03333333333333333
1086
+ G: 0.03333333333333333
1087
+ T: 0.9
1088
+ track: nukes
1089
+ extras:
1090
+ ambiguous_char: N
1091
+ ambiguous_emission_prob: 0.25
1092
+ germline: T
1093
+ name: IGHV2-5_star_02_70
1094
+ transitions:
1095
+ IGHV2-5_star_02_71: 1.0
1096
+ - !!python/object:python.hmmwriter.State
1097
+ emissions:
1098
+ probs:
1099
+ A: 0.03333333333333333
1100
+ C: 0.9
1101
+ G: 0.03333333333333333
1102
+ T: 0.03333333333333333
1103
+ track: nukes
1104
+ extras:
1105
+ ambiguous_char: N
1106
+ ambiguous_emission_prob: 0.25
1107
+ germline: C
1108
+ name: IGHV2-5_star_02_71
1109
+ transitions:
1110
+ IGHV2-5_star_02_72: 1.0
1111
+ - !!python/object:python.hmmwriter.State
1112
+ emissions:
1113
+ probs:
1114
+ A: 0.03333333333333333
1115
+ C: 0.03333333333333333
1116
+ G: 0.03333333333333333
1117
+ T: 0.9
1118
+ track: nukes
1119
+ extras:
1120
+ ambiguous_char: N
1121
+ ambiguous_emission_prob: 0.25
1122
+ germline: T
1123
+ name: IGHV2-5_star_02_72
1124
+ transitions:
1125
+ IGHV2-5_star_02_73: 1.0
1126
+ - !!python/object:python.hmmwriter.State
1127
+ emissions:
1128
+ probs:
1129
+ A: 0.03333333333333333
1130
+ C: 0.9
1131
+ G: 0.03333333333333333
1132
+ T: 0.03333333333333333
1133
+ track: nukes
1134
+ extras:
1135
+ ambiguous_char: N
1136
+ ambiguous_emission_prob: 0.25
1137
+ germline: C
1138
+ name: IGHV2-5_star_02_73
1139
+ transitions:
1140
+ IGHV2-5_star_02_74: 1.0
1141
+ - !!python/object:python.hmmwriter.State
1142
+ emissions:
1143
+ probs:
1144
+ A: 0.03333333333333333
1145
+ C: 0.03333333333333333
1146
+ G: 0.03333333333333333
1147
+ T: 0.9
1148
+ track: nukes
1149
+ extras:
1150
+ ambiguous_char: N
1151
+ ambiguous_emission_prob: 0.25
1152
+ germline: T
1153
+ name: IGHV2-5_star_02_74
1154
+ transitions:
1155
+ IGHV2-5_star_02_75: 1.0
1156
+ - !!python/object:python.hmmwriter.State
1157
+ emissions:
1158
+ probs:
1159
+ A: 0.03333333333333333
1160
+ C: 0.03333333333333333
1161
+ G: 0.9
1162
+ T: 0.03333333333333333
1163
+ track: nukes
1164
+ extras:
1165
+ ambiguous_char: N
1166
+ ambiguous_emission_prob: 0.25
1167
+ germline: G
1168
+ name: IGHV2-5_star_02_75
1169
+ transitions:
1170
+ IGHV2-5_star_02_76: 1.0
1171
+ - !!python/object:python.hmmwriter.State
1172
+ emissions:
1173
+ probs:
1174
+ A: 0.03333333333333333
1175
+ C: 0.03333333333333333
1176
+ G: 0.9
1177
+ T: 0.03333333333333333
1178
+ track: nukes
1179
+ extras:
1180
+ ambiguous_char: N
1181
+ ambiguous_emission_prob: 0.25
1182
+ germline: G
1183
+ name: IGHV2-5_star_02_76
1184
+ transitions:
1185
+ IGHV2-5_star_02_77: 1.0
1186
+ - !!python/object:python.hmmwriter.State
1187
+ emissions:
1188
+ probs:
1189
+ A: 0.03333333333333333
1190
+ C: 0.03333333333333333
1191
+ G: 0.9
1192
+ T: 0.03333333333333333
1193
+ track: nukes
1194
+ extras:
1195
+ ambiguous_char: N
1196
+ ambiguous_emission_prob: 0.25
1197
+ germline: G
1198
+ name: IGHV2-5_star_02_77
1199
+ transitions:
1200
+ IGHV2-5_star_02_78: 1.0
1201
+ - !!python/object:python.hmmwriter.State
1202
+ emissions:
1203
+ probs:
1204
+ A: 0.03333333333333333
1205
+ C: 0.03333333333333333
1206
+ G: 0.03333333333333333
1207
+ T: 0.9
1208
+ track: nukes
1209
+ extras:
1210
+ ambiguous_char: N
1211
+ ambiguous_emission_prob: 0.25
1212
+ germline: T
1213
+ name: IGHV2-5_star_02_78
1214
+ transitions:
1215
+ IGHV2-5_star_02_79: 1.0
1216
+ - !!python/object:python.hmmwriter.State
1217
+ emissions:
1218
+ probs:
1219
+ A: 0.03333333333333333
1220
+ C: 0.03333333333333333
1221
+ G: 0.03333333333333333
1222
+ T: 0.9
1223
+ track: nukes
1224
+ extras:
1225
+ ambiguous_char: N
1226
+ ambiguous_emission_prob: 0.25
1227
+ germline: T
1228
+ name: IGHV2-5_star_02_79
1229
+ transitions:
1230
+ IGHV2-5_star_02_80: 1.0
1231
+ - !!python/object:python.hmmwriter.State
1232
+ emissions:
1233
+ probs:
1234
+ A: 0.03333333333333333
1235
+ C: 0.9
1236
+ G: 0.03333333333333333
1237
+ T: 0.03333333333333333
1238
+ track: nukes
1239
+ extras:
1240
+ ambiguous_char: N
1241
+ ambiguous_emission_prob: 0.25
1242
+ germline: C
1243
+ name: IGHV2-5_star_02_80
1244
+ transitions:
1245
+ IGHV2-5_star_02_81: 1.0
1246
+ - !!python/object:python.hmmwriter.State
1247
+ emissions:
1248
+ probs:
1249
+ A: 0.03333333333333333
1250
+ C: 0.03333333333333333
1251
+ G: 0.03333333333333333
1252
+ T: 0.9
1253
+ track: nukes
1254
+ extras:
1255
+ ambiguous_char: N
1256
+ ambiguous_emission_prob: 0.25
1257
+ germline: T
1258
+ name: IGHV2-5_star_02_81
1259
+ transitions:
1260
+ IGHV2-5_star_02_82: 1.0
1261
+ - !!python/object:python.hmmwriter.State
1262
+ emissions:
1263
+ probs:
1264
+ A: 0.03333333333333333
1265
+ C: 0.9
1266
+ G: 0.03333333333333333
1267
+ T: 0.03333333333333333
1268
+ track: nukes
1269
+ extras:
1270
+ ambiguous_char: N
1271
+ ambiguous_emission_prob: 0.25
1272
+ germline: C
1273
+ name: IGHV2-5_star_02_82
1274
+ transitions:
1275
+ IGHV2-5_star_02_83: 1.0
1276
+ - !!python/object:python.hmmwriter.State
1277
+ emissions:
1278
+ probs:
1279
+ A: 0.9
1280
+ C: 0.03333333333333333
1281
+ G: 0.03333333333333333
1282
+ T: 0.03333333333333333
1283
+ track: nukes
1284
+ extras:
1285
+ ambiguous_char: N
1286
+ ambiguous_emission_prob: 0.25
1287
+ germline: A
1288
+ name: IGHV2-5_star_02_83
1289
+ transitions:
1290
+ IGHV2-5_star_02_84: 1.0
1291
+ - !!python/object:python.hmmwriter.State
1292
+ emissions:
1293
+ probs:
1294
+ A: 0.03333333333333333
1295
+ C: 0.9
1296
+ G: 0.03333333333333333
1297
+ T: 0.03333333333333333
1298
+ track: nukes
1299
+ extras:
1300
+ ambiguous_char: N
1301
+ ambiguous_emission_prob: 0.25
1302
+ germline: C
1303
+ name: IGHV2-5_star_02_84
1304
+ transitions:
1305
+ IGHV2-5_star_02_85: 1.0
1306
+ - !!python/object:python.hmmwriter.State
1307
+ emissions:
1308
+ probs:
1309
+ A: 0.03333333333333333
1310
+ C: 0.03333333333333333
1311
+ G: 0.03333333333333333
1312
+ T: 0.9
1313
+ track: nukes
1314
+ extras:
1315
+ ambiguous_char: N
1316
+ ambiguous_emission_prob: 0.25
1317
+ germline: T
1318
+ name: IGHV2-5_star_02_85
1319
+ transitions:
1320
+ IGHV2-5_star_02_86: 1.0
1321
+ - !!python/object:python.hmmwriter.State
1322
+ emissions:
1323
+ probs:
1324
+ A: 0.03333333333333333
1325
+ C: 0.9
1326
+ G: 0.03333333333333333
1327
+ T: 0.03333333333333333
1328
+ track: nukes
1329
+ extras:
1330
+ ambiguous_char: N
1331
+ ambiguous_emission_prob: 0.25
1332
+ germline: C
1333
+ name: IGHV2-5_star_02_86
1334
+ transitions:
1335
+ IGHV2-5_star_02_87: 1.0
1336
+ - !!python/object:python.hmmwriter.State
1337
+ emissions:
1338
+ probs:
1339
+ A: 0.9
1340
+ C: 0.03333333333333333
1341
+ G: 0.03333333333333333
1342
+ T: 0.03333333333333333
1343
+ track: nukes
1344
+ extras:
1345
+ ambiguous_char: N
1346
+ ambiguous_emission_prob: 0.25
1347
+ germline: A
1348
+ name: IGHV2-5_star_02_87
1349
+ transitions:
1350
+ IGHV2-5_star_02_88: 1.0
1351
+ - !!python/object:python.hmmwriter.State
1352
+ emissions:
1353
+ probs:
1354
+ A: 0.03333333333333333
1355
+ C: 0.03333333333333333
1356
+ G: 0.9
1357
+ T: 0.03333333333333333
1358
+ track: nukes
1359
+ extras:
1360
+ ambiguous_char: N
1361
+ ambiguous_emission_prob: 0.25
1362
+ germline: G
1363
+ name: IGHV2-5_star_02_88
1364
+ transitions:
1365
+ IGHV2-5_star_02_89: 1.0
1366
+ - !!python/object:python.hmmwriter.State
1367
+ emissions:
1368
+ probs:
1369
+ A: 0.03333333333333333
1370
+ C: 0.9
1371
+ G: 0.03333333333333333
1372
+ T: 0.03333333333333333
1373
+ track: nukes
1374
+ extras:
1375
+ ambiguous_char: N
1376
+ ambiguous_emission_prob: 0.25
1377
+ germline: C
1378
+ name: IGHV2-5_star_02_89
1379
+ transitions:
1380
+ IGHV2-5_star_02_90: 1.0
1381
+ - !!python/object:python.hmmwriter.State
1382
+ emissions:
1383
+ probs:
1384
+ A: 0.9
1385
+ C: 0.03333333333333333
1386
+ G: 0.03333333333333333
1387
+ T: 0.03333333333333333
1388
+ track: nukes
1389
+ extras:
1390
+ ambiguous_char: N
1391
+ ambiguous_emission_prob: 0.25
1392
+ germline: A
1393
+ name: IGHV2-5_star_02_90
1394
+ transitions:
1395
+ IGHV2-5_star_02_91: 1.0
1396
+ - !!python/object:python.hmmwriter.State
1397
+ emissions:
1398
+ probs:
1399
+ A: 0.03333333333333333
1400
+ C: 0.9
1401
+ G: 0.03333333333333333
1402
+ T: 0.03333333333333333
1403
+ track: nukes
1404
+ extras:
1405
+ ambiguous_char: N
1406
+ ambiguous_emission_prob: 0.25
1407
+ germline: C
1408
+ name: IGHV2-5_star_02_91
1409
+ transitions:
1410
+ IGHV2-5_star_02_92: 1.0
1411
+ - !!python/object:python.hmmwriter.State
1412
+ emissions:
1413
+ probs:
1414
+ A: 0.03333333333333333
1415
+ C: 0.03333333333333333
1416
+ G: 0.03333333333333333
1417
+ T: 0.9
1418
+ track: nukes
1419
+ extras:
1420
+ ambiguous_char: N
1421
+ ambiguous_emission_prob: 0.25
1422
+ germline: T
1423
+ name: IGHV2-5_star_02_92
1424
+ transitions:
1425
+ IGHV2-5_star_02_93: 1.0
1426
+ - !!python/object:python.hmmwriter.State
1427
+ emissions:
1428
+ probs:
1429
+ A: 0.9
1430
+ C: 0.03333333333333333
1431
+ G: 0.03333333333333333
1432
+ T: 0.03333333333333333
1433
+ track: nukes
1434
+ extras:
1435
+ ambiguous_char: N
1436
+ ambiguous_emission_prob: 0.25
1437
+ germline: A
1438
+ name: IGHV2-5_star_02_93
1439
+ transitions:
1440
+ IGHV2-5_star_02_94: 1.0
1441
+ - !!python/object:python.hmmwriter.State
1442
+ emissions:
1443
+ probs:
1444
+ A: 0.03333333333333333
1445
+ C: 0.03333333333333333
1446
+ G: 0.9
1447
+ T: 0.03333333333333333
1448
+ track: nukes
1449
+ extras:
1450
+ ambiguous_char: N
1451
+ ambiguous_emission_prob: 0.25
1452
+ germline: G
1453
+ name: IGHV2-5_star_02_94
1454
+ transitions:
1455
+ IGHV2-5_star_02_95: 1.0
1456
+ - !!python/object:python.hmmwriter.State
1457
+ emissions:
1458
+ probs:
1459
+ A: 0.03333333333333333
1460
+ C: 0.03333333333333333
1461
+ G: 0.03333333333333333
1462
+ T: 0.9
1463
+ track: nukes
1464
+ extras:
1465
+ ambiguous_char: N
1466
+ ambiguous_emission_prob: 0.25
1467
+ germline: T
1468
+ name: IGHV2-5_star_02_95
1469
+ transitions:
1470
+ IGHV2-5_star_02_96: 1.0
1471
+ - !!python/object:python.hmmwriter.State
1472
+ emissions:
1473
+ probs:
1474
+ A: 0.03333333333333333
1475
+ C: 0.03333333333333333
1476
+ G: 0.9
1477
+ T: 0.03333333333333333
1478
+ track: nukes
1479
+ extras:
1480
+ ambiguous_char: N
1481
+ ambiguous_emission_prob: 0.25
1482
+ germline: G
1483
+ name: IGHV2-5_star_02_96
1484
+ transitions:
1485
+ IGHV2-5_star_02_97: 1.0
1486
+ - !!python/object:python.hmmwriter.State
1487
+ emissions:
1488
+ probs:
1489
+ A: 0.03333333333333333
1490
+ C: 0.03333333333333333
1491
+ G: 0.9
1492
+ T: 0.03333333333333333
1493
+ track: nukes
1494
+ extras:
1495
+ ambiguous_char: N
1496
+ ambiguous_emission_prob: 0.25
1497
+ germline: G
1498
+ name: IGHV2-5_star_02_97
1499
+ transitions:
1500
+ IGHV2-5_star_02_98: 1.0
1501
+ - !!python/object:python.hmmwriter.State
1502
+ emissions:
1503
+ probs:
1504
+ A: 0.9
1505
+ C: 0.03333333333333333
1506
+ G: 0.03333333333333333
1507
+ T: 0.03333333333333333
1508
+ track: nukes
1509
+ extras:
1510
+ ambiguous_char: N
1511
+ ambiguous_emission_prob: 0.25
1512
+ germline: A
1513
+ name: IGHV2-5_star_02_98
1514
+ transitions:
1515
+ IGHV2-5_star_02_99: 1.0
1516
+ - !!python/object:python.hmmwriter.State
1517
+ emissions:
1518
+ probs:
1519
+ A: 0.03333333333333333
1520
+ C: 0.03333333333333333
1521
+ G: 0.9
1522
+ T: 0.03333333333333333
1523
+ track: nukes
1524
+ extras:
1525
+ ambiguous_char: N
1526
+ ambiguous_emission_prob: 0.25
1527
+ germline: G
1528
+ name: IGHV2-5_star_02_99
1529
+ transitions:
1530
+ IGHV2-5_star_02_100: 1.0
1531
+ - !!python/object:python.hmmwriter.State
1532
+ emissions:
1533
+ probs:
1534
+ A: 0.03333333333333333
1535
+ C: 0.03333333333333333
1536
+ G: 0.03333333333333333
1537
+ T: 0.9
1538
+ track: nukes
1539
+ extras:
1540
+ ambiguous_char: N
1541
+ ambiguous_emission_prob: 0.25
1542
+ germline: T
1543
+ name: IGHV2-5_star_02_100
1544
+ transitions:
1545
+ IGHV2-5_star_02_101: 1.0
1546
+ - !!python/object:python.hmmwriter.State
1547
+ emissions:
1548
+ probs:
1549
+ A: 0.03333333333333333
1550
+ C: 0.03333333333333333
1551
+ G: 0.9
1552
+ T: 0.03333333333333333
1553
+ track: nukes
1554
+ extras:
1555
+ ambiguous_char: N
1556
+ ambiguous_emission_prob: 0.25
1557
+ germline: G
1558
+ name: IGHV2-5_star_02_101
1559
+ transitions:
1560
+ IGHV2-5_star_02_102: 1.0
1561
+ - !!python/object:python.hmmwriter.State
1562
+ emissions:
1563
+ probs:
1564
+ A: 0.03333333333333333
1565
+ C: 0.03333333333333333
1566
+ G: 0.9
1567
+ T: 0.03333333333333333
1568
+ track: nukes
1569
+ extras:
1570
+ ambiguous_char: N
1571
+ ambiguous_emission_prob: 0.25
1572
+ germline: G
1573
+ name: IGHV2-5_star_02_102
1574
+ transitions:
1575
+ IGHV2-5_star_02_103: 1.0
1576
+ - !!python/object:python.hmmwriter.State
1577
+ emissions:
1578
+ probs:
1579
+ A: 0.03333333333333333
1580
+ C: 0.03333333333333333
1581
+ G: 0.9
1582
+ T: 0.03333333333333333
1583
+ track: nukes
1584
+ extras:
1585
+ ambiguous_char: N
1586
+ ambiguous_emission_prob: 0.25
1587
+ germline: G
1588
+ name: IGHV2-5_star_02_103
1589
+ transitions:
1590
+ IGHV2-5_star_02_104: 1.0
1591
+ - !!python/object:python.hmmwriter.State
1592
+ emissions:
1593
+ probs:
1594
+ A: 0.03333333333333333
1595
+ C: 0.03333333333333333
1596
+ G: 0.03333333333333333
1597
+ T: 0.9
1598
+ track: nukes
1599
+ extras:
1600
+ ambiguous_char: N
1601
+ ambiguous_emission_prob: 0.25
1602
+ germline: T
1603
+ name: IGHV2-5_star_02_104
1604
+ transitions:
1605
+ IGHV2-5_star_02_105: 1.0
1606
+ - !!python/object:python.hmmwriter.State
1607
+ emissions:
1608
+ probs:
1609
+ A: 0.03333333333333333
1610
+ C: 0.03333333333333333
1611
+ G: 0.9
1612
+ T: 0.03333333333333333
1613
+ track: nukes
1614
+ extras:
1615
+ ambiguous_char: N
1616
+ ambiguous_emission_prob: 0.25
1617
+ germline: G
1618
+ name: IGHV2-5_star_02_105
1619
+ transitions:
1620
+ IGHV2-5_star_02_106: 1.0
1621
+ - !!python/object:python.hmmwriter.State
1622
+ emissions:
1623
+ probs:
1624
+ A: 0.03333333333333333
1625
+ C: 0.03333333333333333
1626
+ G: 0.03333333333333333
1627
+ T: 0.9
1628
+ track: nukes
1629
+ extras:
1630
+ ambiguous_char: N
1631
+ ambiguous_emission_prob: 0.25
1632
+ germline: T
1633
+ name: IGHV2-5_star_02_106
1634
+ transitions:
1635
+ IGHV2-5_star_02_107: 1.0
1636
+ - !!python/object:python.hmmwriter.State
1637
+ emissions:
1638
+ probs:
1639
+ A: 0.03333333333333333
1640
+ C: 0.03333333333333333
1641
+ G: 0.9
1642
+ T: 0.03333333333333333
1643
+ track: nukes
1644
+ extras:
1645
+ ambiguous_char: N
1646
+ ambiguous_emission_prob: 0.25
1647
+ germline: G
1648
+ name: IGHV2-5_star_02_107
1649
+ transitions:
1650
+ IGHV2-5_star_02_108: 1.0
1651
+ - !!python/object:python.hmmwriter.State
1652
+ emissions:
1653
+ probs:
1654
+ A: 0.03333333333333333
1655
+ C: 0.03333333333333333
1656
+ G: 0.9
1657
+ T: 0.03333333333333333
1658
+ track: nukes
1659
+ extras:
1660
+ ambiguous_char: N
1661
+ ambiguous_emission_prob: 0.25
1662
+ germline: G
1663
+ name: IGHV2-5_star_02_108
1664
+ transitions:
1665
+ IGHV2-5_star_02_109: 1.0
1666
+ - !!python/object:python.hmmwriter.State
1667
+ emissions:
1668
+ probs:
1669
+ A: 0.03333333333333333
1670
+ C: 0.03333333333333333
1671
+ G: 0.9
1672
+ T: 0.03333333333333333
1673
+ track: nukes
1674
+ extras:
1675
+ ambiguous_char: N
1676
+ ambiguous_emission_prob: 0.25
1677
+ germline: G
1678
+ name: IGHV2-5_star_02_109
1679
+ transitions:
1680
+ IGHV2-5_star_02_110: 1.0
1681
+ - !!python/object:python.hmmwriter.State
1682
+ emissions:
1683
+ probs:
1684
+ A: 0.03333333333333333
1685
+ C: 0.9
1686
+ G: 0.03333333333333333
1687
+ T: 0.03333333333333333
1688
+ track: nukes
1689
+ extras:
1690
+ ambiguous_char: N
1691
+ ambiguous_emission_prob: 0.25
1692
+ germline: C
1693
+ name: IGHV2-5_star_02_110
1694
+ transitions:
1695
+ IGHV2-5_star_02_111: 1.0
1696
+ - !!python/object:python.hmmwriter.State
1697
+ emissions:
1698
+ probs:
1699
+ A: 0.03333333333333333
1700
+ C: 0.03333333333333333
1701
+ G: 0.03333333333333333
1702
+ T: 0.9
1703
+ track: nukes
1704
+ extras:
1705
+ ambiguous_char: N
1706
+ ambiguous_emission_prob: 0.25
1707
+ germline: T
1708
+ name: IGHV2-5_star_02_111
1709
+ transitions:
1710
+ IGHV2-5_star_02_112: 1.0
1711
+ - !!python/object:python.hmmwriter.State
1712
+ emissions:
1713
+ probs:
1714
+ A: 0.03333333333333333
1715
+ C: 0.03333333333333333
1716
+ G: 0.9
1717
+ T: 0.03333333333333333
1718
+ track: nukes
1719
+ extras:
1720
+ ambiguous_char: N
1721
+ ambiguous_emission_prob: 0.25
1722
+ germline: G
1723
+ name: IGHV2-5_star_02_112
1724
+ transitions:
1725
+ IGHV2-5_star_02_113: 1.0
1726
+ - !!python/object:python.hmmwriter.State
1727
+ emissions:
1728
+ probs:
1729
+ A: 0.03333333333333333
1730
+ C: 0.03333333333333333
1731
+ G: 0.9
1732
+ T: 0.03333333333333333
1733
+ track: nukes
1734
+ extras:
1735
+ ambiguous_char: N
1736
+ ambiguous_emission_prob: 0.25
1737
+ germline: G
1738
+ name: IGHV2-5_star_02_113
1739
+ transitions:
1740
+ IGHV2-5_star_02_114: 1.0
1741
+ - !!python/object:python.hmmwriter.State
1742
+ emissions:
1743
+ probs:
1744
+ A: 0.9
1745
+ C: 0.03333333333333333
1746
+ G: 0.03333333333333333
1747
+ T: 0.03333333333333333
1748
+ track: nukes
1749
+ extras:
1750
+ ambiguous_char: N
1751
+ ambiguous_emission_prob: 0.25
1752
+ germline: A
1753
+ name: IGHV2-5_star_02_114
1754
+ transitions:
1755
+ IGHV2-5_star_02_115: 1.0
1756
+ - !!python/object:python.hmmwriter.State
1757
+ emissions:
1758
+ probs:
1759
+ A: 0.03333333333333333
1760
+ C: 0.03333333333333333
1761
+ G: 0.03333333333333333
1762
+ T: 0.9
1763
+ track: nukes
1764
+ extras:
1765
+ ambiguous_char: N
1766
+ ambiguous_emission_prob: 0.25
1767
+ germline: T
1768
+ name: IGHV2-5_star_02_115
1769
+ transitions:
1770
+ IGHV2-5_star_02_116: 1.0
1771
+ - !!python/object:python.hmmwriter.State
1772
+ emissions:
1773
+ probs:
1774
+ A: 0.03333333333333333
1775
+ C: 0.9
1776
+ G: 0.03333333333333333
1777
+ T: 0.03333333333333333
1778
+ track: nukes
1779
+ extras:
1780
+ ambiguous_char: N
1781
+ ambiguous_emission_prob: 0.25
1782
+ germline: C
1783
+ name: IGHV2-5_star_02_116
1784
+ transitions:
1785
+ IGHV2-5_star_02_117: 1.0
1786
+ - !!python/object:python.hmmwriter.State
1787
+ emissions:
1788
+ probs:
1789
+ A: 0.03333333333333333
1790
+ C: 0.9
1791
+ G: 0.03333333333333333
1792
+ T: 0.03333333333333333
1793
+ track: nukes
1794
+ extras:
1795
+ ambiguous_char: N
1796
+ ambiguous_emission_prob: 0.25
1797
+ germline: C
1798
+ name: IGHV2-5_star_02_117
1799
+ transitions:
1800
+ IGHV2-5_star_02_118: 1.0
1801
+ - !!python/object:python.hmmwriter.State
1802
+ emissions:
1803
+ probs:
1804
+ A: 0.03333333333333333
1805
+ C: 0.03333333333333333
1806
+ G: 0.9
1807
+ T: 0.03333333333333333
1808
+ track: nukes
1809
+ extras:
1810
+ ambiguous_char: N
1811
+ ambiguous_emission_prob: 0.25
1812
+ germline: G
1813
+ name: IGHV2-5_star_02_118
1814
+ transitions:
1815
+ IGHV2-5_star_02_119: 1.0
1816
+ - !!python/object:python.hmmwriter.State
1817
+ emissions:
1818
+ probs:
1819
+ A: 0.03333333333333333
1820
+ C: 0.03333333333333333
1821
+ G: 0.03333333333333333
1822
+ T: 0.9
1823
+ track: nukes
1824
+ extras:
1825
+ ambiguous_char: N
1826
+ ambiguous_emission_prob: 0.25
1827
+ germline: T
1828
+ name: IGHV2-5_star_02_119
1829
+ transitions:
1830
+ IGHV2-5_star_02_120: 1.0
1831
+ - !!python/object:python.hmmwriter.State
1832
+ emissions:
1833
+ probs:
1834
+ A: 0.03333333333333333
1835
+ C: 0.9
1836
+ G: 0.03333333333333333
1837
+ T: 0.03333333333333333
1838
+ track: nukes
1839
+ extras:
1840
+ ambiguous_char: N
1841
+ ambiguous_emission_prob: 0.25
1842
+ germline: C
1843
+ name: IGHV2-5_star_02_120
1844
+ transitions:
1845
+ IGHV2-5_star_02_121: 1.0
1846
+ - !!python/object:python.hmmwriter.State
1847
+ emissions:
1848
+ probs:
1849
+ A: 0.9
1850
+ C: 0.03333333333333333
1851
+ G: 0.03333333333333333
1852
+ T: 0.03333333333333333
1853
+ track: nukes
1854
+ extras:
1855
+ ambiguous_char: N
1856
+ ambiguous_emission_prob: 0.25
1857
+ germline: A
1858
+ name: IGHV2-5_star_02_121
1859
+ transitions:
1860
+ IGHV2-5_star_02_122: 1.0
1861
+ - !!python/object:python.hmmwriter.State
1862
+ emissions:
1863
+ probs:
1864
+ A: 0.03333333333333333
1865
+ C: 0.03333333333333333
1866
+ G: 0.9
1867
+ T: 0.03333333333333333
1868
+ track: nukes
1869
+ extras:
1870
+ ambiguous_char: N
1871
+ ambiguous_emission_prob: 0.25
1872
+ germline: G
1873
+ name: IGHV2-5_star_02_122
1874
+ transitions:
1875
+ IGHV2-5_star_02_123: 1.0
1876
+ - !!python/object:python.hmmwriter.State
1877
+ emissions:
1878
+ probs:
1879
+ A: 0.03333333333333333
1880
+ C: 0.9
1881
+ G: 0.03333333333333333
1882
+ T: 0.03333333333333333
1883
+ track: nukes
1884
+ extras:
1885
+ ambiguous_char: N
1886
+ ambiguous_emission_prob: 0.25
1887
+ germline: C
1888
+ name: IGHV2-5_star_02_123
1889
+ transitions:
1890
+ IGHV2-5_star_02_124: 1.0
1891
+ - !!python/object:python.hmmwriter.State
1892
+ emissions:
1893
+ probs:
1894
+ A: 0.03333333333333333
1895
+ C: 0.9
1896
+ G: 0.03333333333333333
1897
+ T: 0.03333333333333333
1898
+ track: nukes
1899
+ extras:
1900
+ ambiguous_char: N
1901
+ ambiguous_emission_prob: 0.25
1902
+ germline: C
1903
+ name: IGHV2-5_star_02_124
1904
+ transitions:
1905
+ IGHV2-5_star_02_125: 1.0
1906
+ - !!python/object:python.hmmwriter.State
1907
+ emissions:
1908
+ probs:
1909
+ A: 0.03333333333333333
1910
+ C: 0.9
1911
+ G: 0.03333333333333333
1912
+ T: 0.03333333333333333
1913
+ track: nukes
1914
+ extras:
1915
+ ambiguous_char: N
1916
+ ambiguous_emission_prob: 0.25
1917
+ germline: C
1918
+ name: IGHV2-5_star_02_125
1919
+ transitions:
1920
+ IGHV2-5_star_02_126: 1.0
1921
+ - !!python/object:python.hmmwriter.State
1922
+ emissions:
1923
+ probs:
1924
+ A: 0.03333333333333333
1925
+ C: 0.9
1926
+ G: 0.03333333333333333
1927
+ T: 0.03333333333333333
1928
+ track: nukes
1929
+ extras:
1930
+ ambiguous_char: N
1931
+ ambiguous_emission_prob: 0.25
1932
+ germline: C
1933
+ name: IGHV2-5_star_02_126
1934
+ transitions:
1935
+ IGHV2-5_star_02_127: 1.0
1936
+ - !!python/object:python.hmmwriter.State
1937
+ emissions:
1938
+ probs:
1939
+ A: 0.03333333333333333
1940
+ C: 0.9
1941
+ G: 0.03333333333333333
1942
+ T: 0.03333333333333333
1943
+ track: nukes
1944
+ extras:
1945
+ ambiguous_char: N
1946
+ ambiguous_emission_prob: 0.25
1947
+ germline: C
1948
+ name: IGHV2-5_star_02_127
1949
+ transitions:
1950
+ IGHV2-5_star_02_128: 1.0
1951
+ - !!python/object:python.hmmwriter.State
1952
+ emissions:
1953
+ probs:
1954
+ A: 0.9
1955
+ C: 0.03333333333333333
1956
+ G: 0.03333333333333333
1957
+ T: 0.03333333333333333
1958
+ track: nukes
1959
+ extras:
1960
+ ambiguous_char: N
1961
+ ambiguous_emission_prob: 0.25
1962
+ germline: A
1963
+ name: IGHV2-5_star_02_128
1964
+ transitions:
1965
+ IGHV2-5_star_02_129: 1.0
1966
+ - !!python/object:python.hmmwriter.State
1967
+ emissions:
1968
+ probs:
1969
+ A: 0.03333333333333333
1970
+ C: 0.03333333333333333
1971
+ G: 0.9
1972
+ T: 0.03333333333333333
1973
+ track: nukes
1974
+ extras:
1975
+ ambiguous_char: N
1976
+ ambiguous_emission_prob: 0.25
1977
+ germline: G
1978
+ name: IGHV2-5_star_02_129
1979
+ transitions:
1980
+ IGHV2-5_star_02_130: 1.0
1981
+ - !!python/object:python.hmmwriter.State
1982
+ emissions:
1983
+ probs:
1984
+ A: 0.03333333333333333
1985
+ C: 0.03333333333333333
1986
+ G: 0.9
1987
+ T: 0.03333333333333333
1988
+ track: nukes
1989
+ extras:
1990
+ ambiguous_char: N
1991
+ ambiguous_emission_prob: 0.25
1992
+ germline: G
1993
+ name: IGHV2-5_star_02_130
1994
+ transitions:
1995
+ IGHV2-5_star_02_131: 1.0
1996
+ - !!python/object:python.hmmwriter.State
1997
+ emissions:
1998
+ probs:
1999
+ A: 0.9
2000
+ C: 0.03333333333333333
2001
+ G: 0.03333333333333333
2002
+ T: 0.03333333333333333
2003
+ track: nukes
2004
+ extras:
2005
+ ambiguous_char: N
2006
+ ambiguous_emission_prob: 0.25
2007
+ germline: A
2008
+ name: IGHV2-5_star_02_131
2009
+ transitions:
2010
+ IGHV2-5_star_02_132: 1.0
2011
+ - !!python/object:python.hmmwriter.State
2012
+ emissions:
2013
+ probs:
2014
+ A: 0.9
2015
+ C: 0.03333333333333333
2016
+ G: 0.03333333333333333
2017
+ T: 0.03333333333333333
2018
+ track: nukes
2019
+ extras:
2020
+ ambiguous_char: N
2021
+ ambiguous_emission_prob: 0.25
2022
+ germline: A
2023
+ name: IGHV2-5_star_02_132
2024
+ transitions:
2025
+ IGHV2-5_star_02_133: 1.0
2026
+ - !!python/object:python.hmmwriter.State
2027
+ emissions:
2028
+ probs:
2029
+ A: 0.9
2030
+ C: 0.03333333333333333
2031
+ G: 0.03333333333333333
2032
+ T: 0.03333333333333333
2033
+ track: nukes
2034
+ extras:
2035
+ ambiguous_char: N
2036
+ ambiguous_emission_prob: 0.25
2037
+ germline: A
2038
+ name: IGHV2-5_star_02_133
2039
+ transitions:
2040
+ IGHV2-5_star_02_134: 1.0
2041
+ - !!python/object:python.hmmwriter.State
2042
+ emissions:
2043
+ probs:
2044
+ A: 0.03333333333333333
2045
+ C: 0.03333333333333333
2046
+ G: 0.9
2047
+ T: 0.03333333333333333
2048
+ track: nukes
2049
+ extras:
2050
+ ambiguous_char: N
2051
+ ambiguous_emission_prob: 0.25
2052
+ germline: G
2053
+ name: IGHV2-5_star_02_134
2054
+ transitions:
2055
+ IGHV2-5_star_02_135: 1.0
2056
+ - !!python/object:python.hmmwriter.State
2057
+ emissions:
2058
+ probs:
2059
+ A: 0.03333333333333333
2060
+ C: 0.03333333333333333
2061
+ G: 0.9
2062
+ T: 0.03333333333333333
2063
+ track: nukes
2064
+ extras:
2065
+ ambiguous_char: N
2066
+ ambiguous_emission_prob: 0.25
2067
+ germline: G
2068
+ name: IGHV2-5_star_02_135
2069
+ transitions:
2070
+ IGHV2-5_star_02_136: 1.0
2071
+ - !!python/object:python.hmmwriter.State
2072
+ emissions:
2073
+ probs:
2074
+ A: 0.03333333333333333
2075
+ C: 0.9
2076
+ G: 0.03333333333333333
2077
+ T: 0.03333333333333333
2078
+ track: nukes
2079
+ extras:
2080
+ ambiguous_char: N
2081
+ ambiguous_emission_prob: 0.25
2082
+ germline: C
2083
+ name: IGHV2-5_star_02_136
2084
+ transitions:
2085
+ IGHV2-5_star_02_137: 1.0
2086
+ - !!python/object:python.hmmwriter.State
2087
+ emissions:
2088
+ probs:
2089
+ A: 0.03333333333333333
2090
+ C: 0.9
2091
+ G: 0.03333333333333333
2092
+ T: 0.03333333333333333
2093
+ track: nukes
2094
+ extras:
2095
+ ambiguous_char: N
2096
+ ambiguous_emission_prob: 0.25
2097
+ germline: C
2098
+ name: IGHV2-5_star_02_137
2099
+ transitions:
2100
+ IGHV2-5_star_02_138: 1.0
2101
+ - !!python/object:python.hmmwriter.State
2102
+ emissions:
2103
+ probs:
2104
+ A: 0.03333333333333333
2105
+ C: 0.9
2106
+ G: 0.03333333333333333
2107
+ T: 0.03333333333333333
2108
+ track: nukes
2109
+ extras:
2110
+ ambiguous_char: N
2111
+ ambiguous_emission_prob: 0.25
2112
+ germline: C
2113
+ name: IGHV2-5_star_02_138
2114
+ transitions:
2115
+ IGHV2-5_star_02_139: 1.0
2116
+ - !!python/object:python.hmmwriter.State
2117
+ emissions:
2118
+ probs:
2119
+ A: 0.03333333333333333
2120
+ C: 0.03333333333333333
2121
+ G: 0.03333333333333333
2122
+ T: 0.9
2123
+ track: nukes
2124
+ extras:
2125
+ ambiguous_char: N
2126
+ ambiguous_emission_prob: 0.25
2127
+ germline: T
2128
+ name: IGHV2-5_star_02_139
2129
+ transitions:
2130
+ IGHV2-5_star_02_140: 1.0
2131
+ - !!python/object:python.hmmwriter.State
2132
+ emissions:
2133
+ probs:
2134
+ A: 0.03333333333333333
2135
+ C: 0.03333333333333333
2136
+ G: 0.9
2137
+ T: 0.03333333333333333
2138
+ track: nukes
2139
+ extras:
2140
+ ambiguous_char: N
2141
+ ambiguous_emission_prob: 0.25
2142
+ germline: G
2143
+ name: IGHV2-5_star_02_140
2144
+ transitions:
2145
+ IGHV2-5_star_02_141: 1.0
2146
+ - !!python/object:python.hmmwriter.State
2147
+ emissions:
2148
+ probs:
2149
+ A: 0.03333333333333333
2150
+ C: 0.03333333333333333
2151
+ G: 0.9
2152
+ T: 0.03333333333333333
2153
+ track: nukes
2154
+ extras:
2155
+ ambiguous_char: N
2156
+ ambiguous_emission_prob: 0.25
2157
+ germline: G
2158
+ name: IGHV2-5_star_02_141
2159
+ transitions:
2160
+ IGHV2-5_star_02_142: 1.0
2161
+ - !!python/object:python.hmmwriter.State
2162
+ emissions:
2163
+ probs:
2164
+ A: 0.9
2165
+ C: 0.03333333333333333
2166
+ G: 0.03333333333333333
2167
+ T: 0.03333333333333333
2168
+ track: nukes
2169
+ extras:
2170
+ ambiguous_char: N
2171
+ ambiguous_emission_prob: 0.25
2172
+ germline: A
2173
+ name: IGHV2-5_star_02_142
2174
+ transitions:
2175
+ IGHV2-5_star_02_143: 1.0
2176
+ - !!python/object:python.hmmwriter.State
2177
+ emissions:
2178
+ probs:
2179
+ A: 0.03333333333333333
2180
+ C: 0.03333333333333333
2181
+ G: 0.9
2182
+ T: 0.03333333333333333
2183
+ track: nukes
2184
+ extras:
2185
+ ambiguous_char: N
2186
+ ambiguous_emission_prob: 0.25
2187
+ germline: G
2188
+ name: IGHV2-5_star_02_143
2189
+ transitions:
2190
+ IGHV2-5_star_02_144: 1.0
2191
+ - !!python/object:python.hmmwriter.State
2192
+ emissions:
2193
+ probs:
2194
+ A: 0.03333333333333333
2195
+ C: 0.03333333333333333
2196
+ G: 0.03333333333333333
2197
+ T: 0.9
2198
+ track: nukes
2199
+ extras:
2200
+ ambiguous_char: N
2201
+ ambiguous_emission_prob: 0.25
2202
+ germline: T
2203
+ name: IGHV2-5_star_02_144
2204
+ transitions:
2205
+ IGHV2-5_star_02_145: 1.0
2206
+ - !!python/object:python.hmmwriter.State
2207
+ emissions:
2208
+ probs:
2209
+ A: 0.03333333333333333
2210
+ C: 0.03333333333333333
2211
+ G: 0.9
2212
+ T: 0.03333333333333333
2213
+ track: nukes
2214
+ extras:
2215
+ ambiguous_char: N
2216
+ ambiguous_emission_prob: 0.25
2217
+ germline: G
2218
+ name: IGHV2-5_star_02_145
2219
+ transitions:
2220
+ IGHV2-5_star_02_146: 1.0
2221
+ - !!python/object:python.hmmwriter.State
2222
+ emissions:
2223
+ probs:
2224
+ A: 0.03333333333333333
2225
+ C: 0.03333333333333333
2226
+ G: 0.9
2227
+ T: 0.03333333333333333
2228
+ track: nukes
2229
+ extras:
2230
+ ambiguous_char: N
2231
+ ambiguous_emission_prob: 0.25
2232
+ germline: G
2233
+ name: IGHV2-5_star_02_146
2234
+ transitions:
2235
+ IGHV2-5_star_02_147: 1.0
2236
+ - !!python/object:python.hmmwriter.State
2237
+ emissions:
2238
+ probs:
2239
+ A: 0.03333333333333333
2240
+ C: 0.9
2241
+ G: 0.03333333333333333
2242
+ T: 0.03333333333333333
2243
+ track: nukes
2244
+ extras:
2245
+ ambiguous_char: N
2246
+ ambiguous_emission_prob: 0.25
2247
+ germline: C
2248
+ name: IGHV2-5_star_02_147
2249
+ transitions:
2250
+ IGHV2-5_star_02_148: 1.0
2251
+ - !!python/object:python.hmmwriter.State
2252
+ emissions:
2253
+ probs:
2254
+ A: 0.03333333333333333
2255
+ C: 0.03333333333333333
2256
+ G: 0.03333333333333333
2257
+ T: 0.9
2258
+ track: nukes
2259
+ extras:
2260
+ ambiguous_char: N
2261
+ ambiguous_emission_prob: 0.25
2262
+ germline: T
2263
+ name: IGHV2-5_star_02_148
2264
+ transitions:
2265
+ IGHV2-5_star_02_149: 1.0
2266
+ - !!python/object:python.hmmwriter.State
2267
+ emissions:
2268
+ probs:
2269
+ A: 0.03333333333333333
2270
+ C: 0.03333333333333333
2271
+ G: 0.03333333333333333
2272
+ T: 0.9
2273
+ track: nukes
2274
+ extras:
2275
+ ambiguous_char: N
2276
+ ambiguous_emission_prob: 0.25
2277
+ germline: T
2278
+ name: IGHV2-5_star_02_149
2279
+ transitions:
2280
+ IGHV2-5_star_02_150: 1.0
2281
+ - !!python/object:python.hmmwriter.State
2282
+ emissions:
2283
+ probs:
2284
+ A: 0.03333333333333333
2285
+ C: 0.03333333333333333
2286
+ G: 0.9
2287
+ T: 0.03333333333333333
2288
+ track: nukes
2289
+ extras:
2290
+ ambiguous_char: N
2291
+ ambiguous_emission_prob: 0.25
2292
+ germline: G
2293
+ name: IGHV2-5_star_02_150
2294
+ transitions:
2295
+ IGHV2-5_star_02_151: 1.0
2296
+ - !!python/object:python.hmmwriter.State
2297
+ emissions:
2298
+ probs:
2299
+ A: 0.03333333333333333
2300
+ C: 0.9
2301
+ G: 0.03333333333333333
2302
+ T: 0.03333333333333333
2303
+ track: nukes
2304
+ extras:
2305
+ ambiguous_char: N
2306
+ ambiguous_emission_prob: 0.25
2307
+ germline: C
2308
+ name: IGHV2-5_star_02_151
2309
+ transitions:
2310
+ IGHV2-5_star_02_152: 1.0
2311
+ - !!python/object:python.hmmwriter.State
2312
+ emissions:
2313
+ probs:
2314
+ A: 0.9
2315
+ C: 0.03333333333333333
2316
+ G: 0.03333333333333333
2317
+ T: 0.03333333333333333
2318
+ track: nukes
2319
+ extras:
2320
+ ambiguous_char: N
2321
+ ambiguous_emission_prob: 0.25
2322
+ germline: A
2323
+ name: IGHV2-5_star_02_152
2324
+ transitions:
2325
+ IGHV2-5_star_02_153: 1.0
2326
+ - !!python/object:python.hmmwriter.State
2327
+ emissions:
2328
+ probs:
2329
+ A: 0.03333333333333333
2330
+ C: 0.9
2331
+ G: 0.03333333333333333
2332
+ T: 0.03333333333333333
2333
+ track: nukes
2334
+ extras:
2335
+ ambiguous_char: N
2336
+ ambiguous_emission_prob: 0.25
2337
+ germline: C
2338
+ name: IGHV2-5_star_02_153
2339
+ transitions:
2340
+ IGHV2-5_star_02_154: 1.0
2341
+ - !!python/object:python.hmmwriter.State
2342
+ emissions:
2343
+ probs:
2344
+ A: 0.03333333333333333
2345
+ C: 0.03333333333333333
2346
+ G: 0.03333333333333333
2347
+ T: 0.9
2348
+ track: nukes
2349
+ extras:
2350
+ ambiguous_char: N
2351
+ ambiguous_emission_prob: 0.25
2352
+ germline: T
2353
+ name: IGHV2-5_star_02_154
2354
+ transitions:
2355
+ IGHV2-5_star_02_155: 1.0
2356
+ - !!python/object:python.hmmwriter.State
2357
+ emissions:
2358
+ probs:
2359
+ A: 0.03333333333333333
2360
+ C: 0.9
2361
+ G: 0.03333333333333333
2362
+ T: 0.03333333333333333
2363
+ track: nukes
2364
+ extras:
2365
+ ambiguous_char: N
2366
+ ambiguous_emission_prob: 0.25
2367
+ germline: C
2368
+ name: IGHV2-5_star_02_155
2369
+ transitions:
2370
+ IGHV2-5_star_02_156: 1.0
2371
+ - !!python/object:python.hmmwriter.State
2372
+ emissions:
2373
+ probs:
2374
+ A: 0.9
2375
+ C: 0.03333333333333333
2376
+ G: 0.03333333333333333
2377
+ T: 0.03333333333333333
2378
+ track: nukes
2379
+ extras:
2380
+ ambiguous_char: N
2381
+ ambiguous_emission_prob: 0.25
2382
+ germline: A
2383
+ name: IGHV2-5_star_02_156
2384
+ transitions:
2385
+ IGHV2-5_star_02_157: 1.0
2386
+ - !!python/object:python.hmmwriter.State
2387
+ emissions:
2388
+ probs:
2389
+ A: 0.03333333333333333
2390
+ C: 0.03333333333333333
2391
+ G: 0.03333333333333333
2392
+ T: 0.9
2393
+ track: nukes
2394
+ extras:
2395
+ ambiguous_char: N
2396
+ ambiguous_emission_prob: 0.25
2397
+ germline: T
2398
+ name: IGHV2-5_star_02_157
2399
+ transitions:
2400
+ IGHV2-5_star_02_158: 1.0
2401
+ - !!python/object:python.hmmwriter.State
2402
+ emissions:
2403
+ probs:
2404
+ A: 0.03333333333333333
2405
+ C: 0.03333333333333333
2406
+ G: 0.03333333333333333
2407
+ T: 0.9
2408
+ track: nukes
2409
+ extras:
2410
+ ambiguous_char: N
2411
+ ambiguous_emission_prob: 0.25
2412
+ germline: T
2413
+ name: IGHV2-5_star_02_158
2414
+ transitions:
2415
+ IGHV2-5_star_02_159: 1.0
2416
+ - !!python/object:python.hmmwriter.State
2417
+ emissions:
2418
+ probs:
2419
+ A: 0.03333333333333333
2420
+ C: 0.03333333333333333
2421
+ G: 0.03333333333333333
2422
+ T: 0.9
2423
+ track: nukes
2424
+ extras:
2425
+ ambiguous_char: N
2426
+ ambiguous_emission_prob: 0.25
2427
+ germline: T
2428
+ name: IGHV2-5_star_02_159
2429
+ transitions:
2430
+ IGHV2-5_star_02_160: 1.0
2431
+ - !!python/object:python.hmmwriter.State
2432
+ emissions:
2433
+ probs:
2434
+ A: 0.9
2435
+ C: 0.03333333333333333
2436
+ G: 0.03333333333333333
2437
+ T: 0.03333333333333333
2438
+ track: nukes
2439
+ extras:
2440
+ ambiguous_char: N
2441
+ ambiguous_emission_prob: 0.25
2442
+ germline: A
2443
+ name: IGHV2-5_star_02_160
2444
+ transitions:
2445
+ IGHV2-5_star_02_161: 1.0
2446
+ - !!python/object:python.hmmwriter.State
2447
+ emissions:
2448
+ probs:
2449
+ A: 0.03333333333333333
2450
+ C: 0.03333333333333333
2451
+ G: 0.03333333333333333
2452
+ T: 0.9
2453
+ track: nukes
2454
+ extras:
2455
+ ambiguous_char: N
2456
+ ambiguous_emission_prob: 0.25
2457
+ germline: T
2458
+ name: IGHV2-5_star_02_161
2459
+ transitions:
2460
+ IGHV2-5_star_02_162: 1.0
2461
+ - !!python/object:python.hmmwriter.State
2462
+ emissions:
2463
+ probs:
2464
+ A: 0.03333333333333333
2465
+ C: 0.03333333333333333
2466
+ G: 0.03333333333333333
2467
+ T: 0.9
2468
+ track: nukes
2469
+ extras:
2470
+ ambiguous_char: N
2471
+ ambiguous_emission_prob: 0.25
2472
+ germline: T
2473
+ name: IGHV2-5_star_02_162
2474
+ transitions:
2475
+ IGHV2-5_star_02_163: 1.0
2476
+ - !!python/object:python.hmmwriter.State
2477
+ emissions:
2478
+ probs:
2479
+ A: 0.03333333333333333
2480
+ C: 0.03333333333333333
2481
+ G: 0.9
2482
+ T: 0.03333333333333333
2483
+ track: nukes
2484
+ extras:
2485
+ ambiguous_char: N
2486
+ ambiguous_emission_prob: 0.25
2487
+ germline: G
2488
+ name: IGHV2-5_star_02_163
2489
+ transitions:
2490
+ IGHV2-5_star_02_164: 1.0
2491
+ - !!python/object:python.hmmwriter.State
2492
+ emissions:
2493
+ probs:
2494
+ A: 0.03333333333333333
2495
+ C: 0.03333333333333333
2496
+ G: 0.9
2497
+ T: 0.03333333333333333
2498
+ track: nukes
2499
+ extras:
2500
+ ambiguous_char: N
2501
+ ambiguous_emission_prob: 0.25
2502
+ germline: G
2503
+ name: IGHV2-5_star_02_164
2504
+ transitions:
2505
+ IGHV2-5_star_02_165: 1.0
2506
+ - !!python/object:python.hmmwriter.State
2507
+ emissions:
2508
+ probs:
2509
+ A: 0.03333333333333333
2510
+ C: 0.03333333333333333
2511
+ G: 0.9
2512
+ T: 0.03333333333333333
2513
+ track: nukes
2514
+ extras:
2515
+ ambiguous_char: N
2516
+ ambiguous_emission_prob: 0.25
2517
+ germline: G
2518
+ name: IGHV2-5_star_02_165
2519
+ transitions:
2520
+ IGHV2-5_star_02_166: 1.0
2521
+ - !!python/object:python.hmmwriter.State
2522
+ emissions:
2523
+ probs:
2524
+ A: 0.9
2525
+ C: 0.03333333333333333
2526
+ G: 0.03333333333333333
2527
+ T: 0.03333333333333333
2528
+ track: nukes
2529
+ extras:
2530
+ ambiguous_char: N
2531
+ ambiguous_emission_prob: 0.25
2532
+ germline: A
2533
+ name: IGHV2-5_star_02_166
2534
+ transitions:
2535
+ IGHV2-5_star_02_167: 1.0
2536
+ - !!python/object:python.hmmwriter.State
2537
+ emissions:
2538
+ probs:
2539
+ A: 0.03333333333333333
2540
+ C: 0.03333333333333333
2541
+ G: 0.03333333333333333
2542
+ T: 0.9
2543
+ track: nukes
2544
+ extras:
2545
+ ambiguous_char: N
2546
+ ambiguous_emission_prob: 0.25
2547
+ germline: T
2548
+ name: IGHV2-5_star_02_167
2549
+ transitions:
2550
+ IGHV2-5_star_02_168: 1.0
2551
+ - !!python/object:python.hmmwriter.State
2552
+ emissions:
2553
+ probs:
2554
+ A: 0.03333333333333333
2555
+ C: 0.03333333333333333
2556
+ G: 0.9
2557
+ T: 0.03333333333333333
2558
+ track: nukes
2559
+ extras:
2560
+ ambiguous_char: N
2561
+ ambiguous_emission_prob: 0.25
2562
+ germline: G
2563
+ name: IGHV2-5_star_02_168
2564
+ transitions:
2565
+ IGHV2-5_star_02_169: 1.0
2566
+ - !!python/object:python.hmmwriter.State
2567
+ emissions:
2568
+ probs:
2569
+ A: 0.9
2570
+ C: 0.03333333333333333
2571
+ G: 0.03333333333333333
2572
+ T: 0.03333333333333333
2573
+ track: nukes
2574
+ extras:
2575
+ ambiguous_char: N
2576
+ ambiguous_emission_prob: 0.25
2577
+ germline: A
2578
+ name: IGHV2-5_star_02_169
2579
+ transitions:
2580
+ IGHV2-5_star_02_170: 1.0
2581
+ - !!python/object:python.hmmwriter.State
2582
+ emissions:
2583
+ probs:
2584
+ A: 0.03333333333333333
2585
+ C: 0.03333333333333333
2586
+ G: 0.03333333333333333
2587
+ T: 0.9
2588
+ track: nukes
2589
+ extras:
2590
+ ambiguous_char: N
2591
+ ambiguous_emission_prob: 0.25
2592
+ germline: T
2593
+ name: IGHV2-5_star_02_170
2594
+ transitions:
2595
+ IGHV2-5_star_02_171: 1.0
2596
+ - !!python/object:python.hmmwriter.State
2597
+ emissions:
2598
+ probs:
2599
+ A: 0.03333333333333333
2600
+ C: 0.03333333333333333
2601
+ G: 0.9
2602
+ T: 0.03333333333333333
2603
+ track: nukes
2604
+ extras:
2605
+ ambiguous_char: N
2606
+ ambiguous_emission_prob: 0.25
2607
+ germline: G
2608
+ name: IGHV2-5_star_02_171
2609
+ transitions:
2610
+ IGHV2-5_star_02_172: 1.0
2611
+ - !!python/object:python.hmmwriter.State
2612
+ emissions:
2613
+ probs:
2614
+ A: 0.9
2615
+ C: 0.03333333333333333
2616
+ G: 0.03333333333333333
2617
+ T: 0.03333333333333333
2618
+ track: nukes
2619
+ extras:
2620
+ ambiguous_char: N
2621
+ ambiguous_emission_prob: 0.25
2622
+ germline: A
2623
+ name: IGHV2-5_star_02_172
2624
+ transitions:
2625
+ IGHV2-5_star_02_173: 1.0
2626
+ - !!python/object:python.hmmwriter.State
2627
+ emissions:
2628
+ probs:
2629
+ A: 0.03333333333333333
2630
+ C: 0.03333333333333333
2631
+ G: 0.03333333333333333
2632
+ T: 0.9
2633
+ track: nukes
2634
+ extras:
2635
+ ambiguous_char: N
2636
+ ambiguous_emission_prob: 0.25
2637
+ germline: T
2638
+ name: IGHV2-5_star_02_173
2639
+ transitions:
2640
+ IGHV2-5_star_02_174: 1.0
2641
+ - !!python/object:python.hmmwriter.State
2642
+ emissions:
2643
+ probs:
2644
+ A: 0.9
2645
+ C: 0.03333333333333333
2646
+ G: 0.03333333333333333
2647
+ T: 0.03333333333333333
2648
+ track: nukes
2649
+ extras:
2650
+ ambiguous_char: N
2651
+ ambiguous_emission_prob: 0.25
2652
+ germline: A
2653
+ name: IGHV2-5_star_02_174
2654
+ transitions:
2655
+ IGHV2-5_star_02_175: 1.0
2656
+ - !!python/object:python.hmmwriter.State
2657
+ emissions:
2658
+ probs:
2659
+ A: 0.9
2660
+ C: 0.03333333333333333
2661
+ G: 0.03333333333333333
2662
+ T: 0.03333333333333333
2663
+ track: nukes
2664
+ extras:
2665
+ ambiguous_char: N
2666
+ ambiguous_emission_prob: 0.25
2667
+ germline: A
2668
+ name: IGHV2-5_star_02_175
2669
+ transitions:
2670
+ IGHV2-5_star_02_176: 1.0
2671
+ - !!python/object:python.hmmwriter.State
2672
+ emissions:
2673
+ probs:
2674
+ A: 0.03333333333333333
2675
+ C: 0.03333333333333333
2676
+ G: 0.9
2677
+ T: 0.03333333333333333
2678
+ track: nukes
2679
+ extras:
2680
+ ambiguous_char: N
2681
+ ambiguous_emission_prob: 0.25
2682
+ germline: G
2683
+ name: IGHV2-5_star_02_176
2684
+ transitions:
2685
+ IGHV2-5_star_02_177: 1.0
2686
+ - !!python/object:python.hmmwriter.State
2687
+ emissions:
2688
+ probs:
2689
+ A: 0.03333333333333333
2690
+ C: 0.9
2691
+ G: 0.03333333333333333
2692
+ T: 0.03333333333333333
2693
+ track: nukes
2694
+ extras:
2695
+ ambiguous_char: N
2696
+ ambiguous_emission_prob: 0.25
2697
+ germline: C
2698
+ name: IGHV2-5_star_02_177
2699
+ transitions:
2700
+ IGHV2-5_star_02_178: 1.0
2701
+ - !!python/object:python.hmmwriter.State
2702
+ emissions:
2703
+ probs:
2704
+ A: 0.03333333333333333
2705
+ C: 0.03333333333333333
2706
+ G: 0.9
2707
+ T: 0.03333333333333333
2708
+ track: nukes
2709
+ extras:
2710
+ ambiguous_char: N
2711
+ ambiguous_emission_prob: 0.25
2712
+ germline: G
2713
+ name: IGHV2-5_star_02_178
2714
+ transitions:
2715
+ IGHV2-5_star_02_179: 1.0
2716
+ - !!python/object:python.hmmwriter.State
2717
+ emissions:
2718
+ probs:
2719
+ A: 0.03333333333333333
2720
+ C: 0.9
2721
+ G: 0.03333333333333333
2722
+ T: 0.03333333333333333
2723
+ track: nukes
2724
+ extras:
2725
+ ambiguous_char: N
2726
+ ambiguous_emission_prob: 0.25
2727
+ germline: C
2728
+ name: IGHV2-5_star_02_179
2729
+ transitions:
2730
+ IGHV2-5_star_02_180: 1.0
2731
+ - !!python/object:python.hmmwriter.State
2732
+ emissions:
2733
+ probs:
2734
+ A: 0.03333333333333333
2735
+ C: 0.03333333333333333
2736
+ G: 0.03333333333333333
2737
+ T: 0.9
2738
+ track: nukes
2739
+ extras:
2740
+ ambiguous_char: N
2741
+ ambiguous_emission_prob: 0.25
2742
+ germline: T
2743
+ name: IGHV2-5_star_02_180
2744
+ transitions:
2745
+ IGHV2-5_star_02_181: 1.0
2746
+ - !!python/object:python.hmmwriter.State
2747
+ emissions:
2748
+ probs:
2749
+ A: 0.9
2750
+ C: 0.03333333333333333
2751
+ G: 0.03333333333333333
2752
+ T: 0.03333333333333333
2753
+ track: nukes
2754
+ extras:
2755
+ ambiguous_char: N
2756
+ ambiguous_emission_prob: 0.25
2757
+ germline: A
2758
+ name: IGHV2-5_star_02_181
2759
+ transitions:
2760
+ IGHV2-5_star_02_182: 1.0
2761
+ - !!python/object:python.hmmwriter.State
2762
+ emissions:
2763
+ probs:
2764
+ A: 0.03333333333333333
2765
+ C: 0.9
2766
+ G: 0.03333333333333333
2767
+ T: 0.03333333333333333
2768
+ track: nukes
2769
+ extras:
2770
+ ambiguous_char: N
2771
+ ambiguous_emission_prob: 0.25
2772
+ germline: C
2773
+ name: IGHV2-5_star_02_182
2774
+ transitions:
2775
+ IGHV2-5_star_02_183: 1.0
2776
+ - !!python/object:python.hmmwriter.State
2777
+ emissions:
2778
+ probs:
2779
+ A: 0.9
2780
+ C: 0.03333333333333333
2781
+ G: 0.03333333333333333
2782
+ T: 0.03333333333333333
2783
+ track: nukes
2784
+ extras:
2785
+ ambiguous_char: N
2786
+ ambiguous_emission_prob: 0.25
2787
+ germline: A
2788
+ name: IGHV2-5_star_02_183
2789
+ transitions:
2790
+ IGHV2-5_star_02_184: 1.0
2791
+ - !!python/object:python.hmmwriter.State
2792
+ emissions:
2793
+ probs:
2794
+ A: 0.03333333333333333
2795
+ C: 0.03333333333333333
2796
+ G: 0.9
2797
+ T: 0.03333333333333333
2798
+ track: nukes
2799
+ extras:
2800
+ ambiguous_char: N
2801
+ ambiguous_emission_prob: 0.25
2802
+ germline: G
2803
+ name: IGHV2-5_star_02_184
2804
+ transitions:
2805
+ IGHV2-5_star_02_185: 1.0
2806
+ - !!python/object:python.hmmwriter.State
2807
+ emissions:
2808
+ probs:
2809
+ A: 0.03333333333333333
2810
+ C: 0.9
2811
+ G: 0.03333333333333333
2812
+ T: 0.03333333333333333
2813
+ track: nukes
2814
+ extras:
2815
+ ambiguous_char: N
2816
+ ambiguous_emission_prob: 0.25
2817
+ germline: C
2818
+ name: IGHV2-5_star_02_185
2819
+ transitions:
2820
+ IGHV2-5_star_02_186: 1.0
2821
+ - !!python/object:python.hmmwriter.State
2822
+ emissions:
2823
+ probs:
2824
+ A: 0.03333333333333333
2825
+ C: 0.9
2826
+ G: 0.03333333333333333
2827
+ T: 0.03333333333333333
2828
+ track: nukes
2829
+ extras:
2830
+ ambiguous_char: N
2831
+ ambiguous_emission_prob: 0.25
2832
+ germline: C
2833
+ name: IGHV2-5_star_02_186
2834
+ transitions:
2835
+ IGHV2-5_star_02_187: 1.0
2836
+ - !!python/object:python.hmmwriter.State
2837
+ emissions:
2838
+ probs:
2839
+ A: 0.03333333333333333
2840
+ C: 0.9
2841
+ G: 0.03333333333333333
2842
+ T: 0.03333333333333333
2843
+ track: nukes
2844
+ extras:
2845
+ ambiguous_char: N
2846
+ ambiguous_emission_prob: 0.25
2847
+ germline: C
2848
+ name: IGHV2-5_star_02_187
2849
+ transitions:
2850
+ IGHV2-5_star_02_188: 1.0
2851
+ - !!python/object:python.hmmwriter.State
2852
+ emissions:
2853
+ probs:
2854
+ A: 0.9
2855
+ C: 0.03333333333333333
2856
+ G: 0.03333333333333333
2857
+ T: 0.03333333333333333
2858
+ track: nukes
2859
+ extras:
2860
+ ambiguous_char: N
2861
+ ambiguous_emission_prob: 0.25
2862
+ germline: A
2863
+ name: IGHV2-5_star_02_188
2864
+ transitions:
2865
+ IGHV2-5_star_02_189: 1.0
2866
+ - !!python/object:python.hmmwriter.State
2867
+ emissions:
2868
+ probs:
2869
+ A: 0.03333333333333333
2870
+ C: 0.03333333333333333
2871
+ G: 0.03333333333333333
2872
+ T: 0.9
2873
+ track: nukes
2874
+ extras:
2875
+ ambiguous_char: N
2876
+ ambiguous_emission_prob: 0.25
2877
+ germline: T
2878
+ name: IGHV2-5_star_02_189
2879
+ transitions:
2880
+ IGHV2-5_star_02_190: 1.0
2881
+ - !!python/object:python.hmmwriter.State
2882
+ emissions:
2883
+ probs:
2884
+ A: 0.03333333333333333
2885
+ C: 0.9
2886
+ G: 0.03333333333333333
2887
+ T: 0.03333333333333333
2888
+ track: nukes
2889
+ extras:
2890
+ ambiguous_char: N
2891
+ ambiguous_emission_prob: 0.25
2892
+ germline: C
2893
+ name: IGHV2-5_star_02_190
2894
+ transitions:
2895
+ IGHV2-5_star_02_191: 1.0
2896
+ - !!python/object:python.hmmwriter.State
2897
+ emissions:
2898
+ probs:
2899
+ A: 0.03333333333333333
2900
+ C: 0.03333333333333333
2901
+ G: 0.03333333333333333
2902
+ T: 0.9
2903
+ track: nukes
2904
+ extras:
2905
+ ambiguous_char: N
2906
+ ambiguous_emission_prob: 0.25
2907
+ germline: T
2908
+ name: IGHV2-5_star_02_191
2909
+ transitions:
2910
+ IGHV2-5_star_02_192: 1.0
2911
+ - !!python/object:python.hmmwriter.State
2912
+ emissions:
2913
+ probs:
2914
+ A: 0.03333333333333333
2915
+ C: 0.9
2916
+ G: 0.03333333333333333
2917
+ T: 0.03333333333333333
2918
+ track: nukes
2919
+ extras:
2920
+ ambiguous_char: N
2921
+ ambiguous_emission_prob: 0.25
2922
+ germline: C
2923
+ name: IGHV2-5_star_02_192
2924
+ transitions:
2925
+ IGHV2-5_star_02_193: 1.0
2926
+ - !!python/object:python.hmmwriter.State
2927
+ emissions:
2928
+ probs:
2929
+ A: 0.03333333333333333
2930
+ C: 0.03333333333333333
2931
+ G: 0.03333333333333333
2932
+ T: 0.9
2933
+ track: nukes
2934
+ extras:
2935
+ ambiguous_char: N
2936
+ ambiguous_emission_prob: 0.25
2937
+ germline: T
2938
+ name: IGHV2-5_star_02_193
2939
+ transitions:
2940
+ IGHV2-5_star_02_194: 1.0
2941
+ - !!python/object:python.hmmwriter.State
2942
+ emissions:
2943
+ probs:
2944
+ A: 0.03333333333333333
2945
+ C: 0.03333333333333333
2946
+ G: 0.9
2947
+ T: 0.03333333333333333
2948
+ track: nukes
2949
+ extras:
2950
+ ambiguous_char: N
2951
+ ambiguous_emission_prob: 0.25
2952
+ germline: G
2953
+ name: IGHV2-5_star_02_194
2954
+ transitions:
2955
+ IGHV2-5_star_02_195: 1.0
2956
+ - !!python/object:python.hmmwriter.State
2957
+ emissions:
2958
+ probs:
2959
+ A: 0.9
2960
+ C: 0.03333333333333333
2961
+ G: 0.03333333333333333
2962
+ T: 0.03333333333333333
2963
+ track: nukes
2964
+ extras:
2965
+ ambiguous_char: N
2966
+ ambiguous_emission_prob: 0.25
2967
+ germline: A
2968
+ name: IGHV2-5_star_02_195
2969
+ transitions:
2970
+ IGHV2-5_star_02_196: 1.0
2971
+ - !!python/object:python.hmmwriter.State
2972
+ emissions:
2973
+ probs:
2974
+ A: 0.9
2975
+ C: 0.03333333333333333
2976
+ G: 0.03333333333333333
2977
+ T: 0.03333333333333333
2978
+ track: nukes
2979
+ extras:
2980
+ ambiguous_char: N
2981
+ ambiguous_emission_prob: 0.25
2982
+ germline: A
2983
+ name: IGHV2-5_star_02_196
2984
+ transitions:
2985
+ IGHV2-5_star_02_197: 1.0
2986
+ - !!python/object:python.hmmwriter.State
2987
+ emissions:
2988
+ probs:
2989
+ A: 0.03333333333333333
2990
+ C: 0.03333333333333333
2991
+ G: 0.9
2992
+ T: 0.03333333333333333
2993
+ track: nukes
2994
+ extras:
2995
+ ambiguous_char: N
2996
+ ambiguous_emission_prob: 0.25
2997
+ germline: G
2998
+ name: IGHV2-5_star_02_197
2999
+ transitions:
3000
+ IGHV2-5_star_02_198: 1.0
3001
+ - !!python/object:python.hmmwriter.State
3002
+ emissions:
3003
+ probs:
3004
+ A: 0.9
3005
+ C: 0.03333333333333333
3006
+ G: 0.03333333333333333
3007
+ T: 0.03333333333333333
3008
+ track: nukes
3009
+ extras:
3010
+ ambiguous_char: N
3011
+ ambiguous_emission_prob: 0.25
3012
+ germline: A
3013
+ name: IGHV2-5_star_02_198
3014
+ transitions:
3015
+ IGHV2-5_star_02_199: 1.0
3016
+ - !!python/object:python.hmmwriter.State
3017
+ emissions:
3018
+ probs:
3019
+ A: 0.03333333333333333
3020
+ C: 0.03333333333333333
3021
+ G: 0.9
3022
+ T: 0.03333333333333333
3023
+ track: nukes
3024
+ extras:
3025
+ ambiguous_char: N
3026
+ ambiguous_emission_prob: 0.25
3027
+ germline: G
3028
+ name: IGHV2-5_star_02_199
3029
+ transitions:
3030
+ IGHV2-5_star_02_200: 1.0
3031
+ - !!python/object:python.hmmwriter.State
3032
+ emissions:
3033
+ probs:
3034
+ A: 0.03333333333333333
3035
+ C: 0.9
3036
+ G: 0.03333333333333333
3037
+ T: 0.03333333333333333
3038
+ track: nukes
3039
+ extras:
3040
+ ambiguous_char: N
3041
+ ambiguous_emission_prob: 0.25
3042
+ germline: C
3043
+ name: IGHV2-5_star_02_200
3044
+ transitions:
3045
+ IGHV2-5_star_02_201: 1.0
3046
+ - !!python/object:python.hmmwriter.State
3047
+ emissions:
3048
+ probs:
3049
+ A: 0.9
3050
+ C: 0.03333333333333333
3051
+ G: 0.03333333333333333
3052
+ T: 0.03333333333333333
3053
+ track: nukes
3054
+ extras:
3055
+ ambiguous_char: N
3056
+ ambiguous_emission_prob: 0.25
3057
+ germline: A
3058
+ name: IGHV2-5_star_02_201
3059
+ transitions:
3060
+ IGHV2-5_star_02_202: 1.0
3061
+ - !!python/object:python.hmmwriter.State
3062
+ emissions:
3063
+ probs:
3064
+ A: 0.03333333333333333
3065
+ C: 0.03333333333333333
3066
+ G: 0.9
3067
+ T: 0.03333333333333333
3068
+ track: nukes
3069
+ extras:
3070
+ ambiguous_char: N
3071
+ ambiguous_emission_prob: 0.25
3072
+ germline: G
3073
+ name: IGHV2-5_star_02_202
3074
+ transitions:
3075
+ IGHV2-5_star_02_203: 1.0
3076
+ - !!python/object:python.hmmwriter.State
3077
+ emissions:
3078
+ probs:
3079
+ A: 0.03333333333333333
3080
+ C: 0.03333333333333333
3081
+ G: 0.9
3082
+ T: 0.03333333333333333
3083
+ track: nukes
3084
+ extras:
3085
+ ambiguous_char: N
3086
+ ambiguous_emission_prob: 0.25
3087
+ germline: G
3088
+ name: IGHV2-5_star_02_203
3089
+ transitions:
3090
+ IGHV2-5_star_02_204: 1.0
3091
+ - !!python/object:python.hmmwriter.State
3092
+ emissions:
3093
+ probs:
3094
+ A: 0.03333333333333333
3095
+ C: 0.9
3096
+ G: 0.03333333333333333
3097
+ T: 0.03333333333333333
3098
+ track: nukes
3099
+ extras:
3100
+ ambiguous_char: N
3101
+ ambiguous_emission_prob: 0.25
3102
+ germline: C
3103
+ name: IGHV2-5_star_02_204
3104
+ transitions:
3105
+ IGHV2-5_star_02_205: 1.0
3106
+ - !!python/object:python.hmmwriter.State
3107
+ emissions:
3108
+ probs:
3109
+ A: 0.03333333333333333
3110
+ C: 0.03333333333333333
3111
+ G: 0.03333333333333333
3112
+ T: 0.9
3113
+ track: nukes
3114
+ extras:
3115
+ ambiguous_char: N
3116
+ ambiguous_emission_prob: 0.25
3117
+ germline: T
3118
+ name: IGHV2-5_star_02_205
3119
+ transitions:
3120
+ IGHV2-5_star_02_206: 1.0
3121
+ - !!python/object:python.hmmwriter.State
3122
+ emissions:
3123
+ probs:
3124
+ A: 0.03333333333333333
3125
+ C: 0.9
3126
+ G: 0.03333333333333333
3127
+ T: 0.03333333333333333
3128
+ track: nukes
3129
+ extras:
3130
+ ambiguous_char: N
3131
+ ambiguous_emission_prob: 0.25
3132
+ germline: C
3133
+ name: IGHV2-5_star_02_206
3134
+ transitions:
3135
+ IGHV2-5_star_02_207: 1.0
3136
+ - !!python/object:python.hmmwriter.State
3137
+ emissions:
3138
+ probs:
3139
+ A: 0.9
3140
+ C: 0.03333333333333333
3141
+ G: 0.03333333333333333
3142
+ T: 0.03333333333333333
3143
+ track: nukes
3144
+ extras:
3145
+ ambiguous_char: N
3146
+ ambiguous_emission_prob: 0.25
3147
+ germline: A
3148
+ name: IGHV2-5_star_02_207
3149
+ transitions:
3150
+ IGHV2-5_star_02_208: 1.0
3151
+ - !!python/object:python.hmmwriter.State
3152
+ emissions:
3153
+ probs:
3154
+ A: 0.03333333333333333
3155
+ C: 0.9
3156
+ G: 0.03333333333333333
3157
+ T: 0.03333333333333333
3158
+ track: nukes
3159
+ extras:
3160
+ ambiguous_char: N
3161
+ ambiguous_emission_prob: 0.25
3162
+ germline: C
3163
+ name: IGHV2-5_star_02_208
3164
+ transitions:
3165
+ IGHV2-5_star_02_209: 1.0
3166
+ - !!python/object:python.hmmwriter.State
3167
+ emissions:
3168
+ probs:
3169
+ A: 0.03333333333333333
3170
+ C: 0.9
3171
+ G: 0.03333333333333333
3172
+ T: 0.03333333333333333
3173
+ track: nukes
3174
+ extras:
3175
+ ambiguous_char: N
3176
+ ambiguous_emission_prob: 0.25
3177
+ germline: C
3178
+ name: IGHV2-5_star_02_209
3179
+ transitions:
3180
+ IGHV2-5_star_02_210: 1.0
3181
+ - !!python/object:python.hmmwriter.State
3182
+ emissions:
3183
+ probs:
3184
+ A: 0.9
3185
+ C: 0.03333333333333333
3186
+ G: 0.03333333333333333
3187
+ T: 0.03333333333333333
3188
+ track: nukes
3189
+ extras:
3190
+ ambiguous_char: N
3191
+ ambiguous_emission_prob: 0.25
3192
+ germline: A
3193
+ name: IGHV2-5_star_02_210
3194
+ transitions:
3195
+ IGHV2-5_star_02_211: 1.0
3196
+ - !!python/object:python.hmmwriter.State
3197
+ emissions:
3198
+ probs:
3199
+ A: 0.03333333333333333
3200
+ C: 0.03333333333333333
3201
+ G: 0.03333333333333333
3202
+ T: 0.9
3203
+ track: nukes
3204
+ extras:
3205
+ ambiguous_char: N
3206
+ ambiguous_emission_prob: 0.25
3207
+ germline: T
3208
+ name: IGHV2-5_star_02_211
3209
+ transitions:
3210
+ IGHV2-5_star_02_212: 1.0
3211
+ - !!python/object:python.hmmwriter.State
3212
+ emissions:
3213
+ probs:
3214
+ A: 0.03333333333333333
3215
+ C: 0.9
3216
+ G: 0.03333333333333333
3217
+ T: 0.03333333333333333
3218
+ track: nukes
3219
+ extras:
3220
+ ambiguous_char: N
3221
+ ambiguous_emission_prob: 0.25
3222
+ germline: C
3223
+ name: IGHV2-5_star_02_212
3224
+ transitions:
3225
+ IGHV2-5_star_02_213: 1.0
3226
+ - !!python/object:python.hmmwriter.State
3227
+ emissions:
3228
+ probs:
3229
+ A: 0.9
3230
+ C: 0.03333333333333333
3231
+ G: 0.03333333333333333
3232
+ T: 0.03333333333333333
3233
+ track: nukes
3234
+ extras:
3235
+ ambiguous_char: N
3236
+ ambiguous_emission_prob: 0.25
3237
+ germline: A
3238
+ name: IGHV2-5_star_02_213
3239
+ transitions:
3240
+ IGHV2-5_star_02_214: 1.0
3241
+ - !!python/object:python.hmmwriter.State
3242
+ emissions:
3243
+ probs:
3244
+ A: 0.03333333333333333
3245
+ C: 0.9
3246
+ G: 0.03333333333333333
3247
+ T: 0.03333333333333333
3248
+ track: nukes
3249
+ extras:
3250
+ ambiguous_char: N
3251
+ ambiguous_emission_prob: 0.25
3252
+ germline: C
3253
+ name: IGHV2-5_star_02_214
3254
+ transitions:
3255
+ IGHV2-5_star_02_215: 1.0
3256
+ - !!python/object:python.hmmwriter.State
3257
+ emissions:
3258
+ probs:
3259
+ A: 0.03333333333333333
3260
+ C: 0.9
3261
+ G: 0.03333333333333333
3262
+ T: 0.03333333333333333
3263
+ track: nukes
3264
+ extras:
3265
+ ambiguous_char: N
3266
+ ambiguous_emission_prob: 0.25
3267
+ germline: C
3268
+ name: IGHV2-5_star_02_215
3269
+ transitions:
3270
+ IGHV2-5_star_02_216: 1.0
3271
+ - !!python/object:python.hmmwriter.State
3272
+ emissions:
3273
+ probs:
3274
+ A: 0.9
3275
+ C: 0.03333333333333333
3276
+ G: 0.03333333333333333
3277
+ T: 0.03333333333333333
3278
+ track: nukes
3279
+ extras:
3280
+ ambiguous_char: N
3281
+ ambiguous_emission_prob: 0.25
3282
+ germline: A
3283
+ name: IGHV2-5_star_02_216
3284
+ transitions:
3285
+ IGHV2-5_star_02_217: 1.0
3286
+ - !!python/object:python.hmmwriter.State
3287
+ emissions:
3288
+ probs:
3289
+ A: 0.9
3290
+ C: 0.03333333333333333
3291
+ G: 0.03333333333333333
3292
+ T: 0.03333333333333333
3293
+ track: nukes
3294
+ extras:
3295
+ ambiguous_char: N
3296
+ ambiguous_emission_prob: 0.25
3297
+ germline: A
3298
+ name: IGHV2-5_star_02_217
3299
+ transitions:
3300
+ IGHV2-5_star_02_218: 1.0
3301
+ - !!python/object:python.hmmwriter.State
3302
+ emissions:
3303
+ probs:
3304
+ A: 0.03333333333333333
3305
+ C: 0.03333333333333333
3306
+ G: 0.9
3307
+ T: 0.03333333333333333
3308
+ track: nukes
3309
+ extras:
3310
+ ambiguous_char: N
3311
+ ambiguous_emission_prob: 0.25
3312
+ germline: G
3313
+ name: IGHV2-5_star_02_218
3314
+ transitions:
3315
+ IGHV2-5_star_02_219: 1.0
3316
+ - !!python/object:python.hmmwriter.State
3317
+ emissions:
3318
+ probs:
3319
+ A: 0.03333333333333333
3320
+ C: 0.03333333333333333
3321
+ G: 0.9
3322
+ T: 0.03333333333333333
3323
+ track: nukes
3324
+ extras:
3325
+ ambiguous_char: N
3326
+ ambiguous_emission_prob: 0.25
3327
+ germline: G
3328
+ name: IGHV2-5_star_02_219
3329
+ transitions:
3330
+ IGHV2-5_star_02_220: 1.0
3331
+ - !!python/object:python.hmmwriter.State
3332
+ emissions:
3333
+ probs:
3334
+ A: 0.9
3335
+ C: 0.03333333333333333
3336
+ G: 0.03333333333333333
3337
+ T: 0.03333333333333333
3338
+ track: nukes
3339
+ extras:
3340
+ ambiguous_char: N
3341
+ ambiguous_emission_prob: 0.25
3342
+ germline: A
3343
+ name: IGHV2-5_star_02_220
3344
+ transitions:
3345
+ IGHV2-5_star_02_221: 1.0
3346
+ - !!python/object:python.hmmwriter.State
3347
+ emissions:
3348
+ probs:
3349
+ A: 0.03333333333333333
3350
+ C: 0.9
3351
+ G: 0.03333333333333333
3352
+ T: 0.03333333333333333
3353
+ track: nukes
3354
+ extras:
3355
+ ambiguous_char: N
3356
+ ambiguous_emission_prob: 0.25
3357
+ germline: C
3358
+ name: IGHV2-5_star_02_221
3359
+ transitions:
3360
+ IGHV2-5_star_02_222: 1.0
3361
+ - !!python/object:python.hmmwriter.State
3362
+ emissions:
3363
+ probs:
3364
+ A: 0.9
3365
+ C: 0.03333333333333333
3366
+ G: 0.03333333333333333
3367
+ T: 0.03333333333333333
3368
+ track: nukes
3369
+ extras:
3370
+ ambiguous_char: N
3371
+ ambiguous_emission_prob: 0.25
3372
+ germline: A
3373
+ name: IGHV2-5_star_02_222
3374
+ transitions:
3375
+ IGHV2-5_star_02_223: 1.0
3376
+ - !!python/object:python.hmmwriter.State
3377
+ emissions:
3378
+ probs:
3379
+ A: 0.03333333333333333
3380
+ C: 0.9
3381
+ G: 0.03333333333333333
3382
+ T: 0.03333333333333333
3383
+ track: nukes
3384
+ extras:
3385
+ ambiguous_char: N
3386
+ ambiguous_emission_prob: 0.25
3387
+ germline: C
3388
+ name: IGHV2-5_star_02_223
3389
+ transitions:
3390
+ IGHV2-5_star_02_224: 1.0
3391
+ - !!python/object:python.hmmwriter.State
3392
+ emissions:
3393
+ probs:
3394
+ A: 0.03333333333333333
3395
+ C: 0.9
3396
+ G: 0.03333333333333333
3397
+ T: 0.03333333333333333
3398
+ track: nukes
3399
+ extras:
3400
+ ambiguous_char: N
3401
+ ambiguous_emission_prob: 0.25
3402
+ germline: C
3403
+ name: IGHV2-5_star_02_224
3404
+ transitions:
3405
+ IGHV2-5_star_02_225: 1.0
3406
+ - !!python/object:python.hmmwriter.State
3407
+ emissions:
3408
+ probs:
3409
+ A: 0.03333333333333333
3410
+ C: 0.03333333333333333
3411
+ G: 0.03333333333333333
3412
+ T: 0.9
3413
+ track: nukes
3414
+ extras:
3415
+ ambiguous_char: N
3416
+ ambiguous_emission_prob: 0.25
3417
+ germline: T
3418
+ name: IGHV2-5_star_02_225
3419
+ transitions:
3420
+ IGHV2-5_star_02_226: 1.0
3421
+ - !!python/object:python.hmmwriter.State
3422
+ emissions:
3423
+ probs:
3424
+ A: 0.03333333333333333
3425
+ C: 0.9
3426
+ G: 0.03333333333333333
3427
+ T: 0.03333333333333333
3428
+ track: nukes
3429
+ extras:
3430
+ ambiguous_char: N
3431
+ ambiguous_emission_prob: 0.25
3432
+ germline: C
3433
+ name: IGHV2-5_star_02_226
3434
+ transitions:
3435
+ IGHV2-5_star_02_227: 1.0
3436
+ - !!python/object:python.hmmwriter.State
3437
+ emissions:
3438
+ probs:
3439
+ A: 0.03333333333333333
3440
+ C: 0.9
3441
+ G: 0.03333333333333333
3442
+ T: 0.03333333333333333
3443
+ track: nukes
3444
+ extras:
3445
+ ambiguous_char: N
3446
+ ambiguous_emission_prob: 0.25
3447
+ germline: C
3448
+ name: IGHV2-5_star_02_227
3449
+ transitions:
3450
+ IGHV2-5_star_02_228: 1.0
3451
+ - !!python/object:python.hmmwriter.State
3452
+ emissions:
3453
+ probs:
3454
+ A: 0.9
3455
+ C: 0.03333333333333333
3456
+ G: 0.03333333333333333
3457
+ T: 0.03333333333333333
3458
+ track: nukes
3459
+ extras:
3460
+ ambiguous_char: N
3461
+ ambiguous_emission_prob: 0.25
3462
+ germline: A
3463
+ name: IGHV2-5_star_02_228
3464
+ transitions:
3465
+ IGHV2-5_star_02_229: 1.0
3466
+ - !!python/object:python.hmmwriter.State
3467
+ emissions:
3468
+ probs:
3469
+ A: 0.9
3470
+ C: 0.03333333333333333
3471
+ G: 0.03333333333333333
3472
+ T: 0.03333333333333333
3473
+ track: nukes
3474
+ extras:
3475
+ ambiguous_char: N
3476
+ ambiguous_emission_prob: 0.25
3477
+ germline: A
3478
+ name: IGHV2-5_star_02_229
3479
+ transitions:
3480
+ IGHV2-5_star_02_230: 1.0
3481
+ - !!python/object:python.hmmwriter.State
3482
+ emissions:
3483
+ probs:
3484
+ A: 0.9
3485
+ C: 0.03333333333333333
3486
+ G: 0.03333333333333333
3487
+ T: 0.03333333333333333
3488
+ track: nukes
3489
+ extras:
3490
+ ambiguous_char: N
3491
+ ambiguous_emission_prob: 0.25
3492
+ germline: A
3493
+ name: IGHV2-5_star_02_230
3494
+ transitions:
3495
+ IGHV2-5_star_02_231: 1.0
3496
+ - !!python/object:python.hmmwriter.State
3497
+ emissions:
3498
+ probs:
3499
+ A: 0.9
3500
+ C: 0.03333333333333333
3501
+ G: 0.03333333333333333
3502
+ T: 0.03333333333333333
3503
+ track: nukes
3504
+ extras:
3505
+ ambiguous_char: N
3506
+ ambiguous_emission_prob: 0.25
3507
+ germline: A
3508
+ name: IGHV2-5_star_02_231
3509
+ transitions:
3510
+ IGHV2-5_star_02_232: 1.0
3511
+ - !!python/object:python.hmmwriter.State
3512
+ emissions:
3513
+ probs:
3514
+ A: 0.9
3515
+ C: 0.03333333333333333
3516
+ G: 0.03333333333333333
3517
+ T: 0.03333333333333333
3518
+ track: nukes
3519
+ extras:
3520
+ ambiguous_char: N
3521
+ ambiguous_emission_prob: 0.25
3522
+ germline: A
3523
+ name: IGHV2-5_star_02_232
3524
+ transitions:
3525
+ IGHV2-5_star_02_233: 1.0
3526
+ - !!python/object:python.hmmwriter.State
3527
+ emissions:
3528
+ probs:
3529
+ A: 0.03587185532259167
3530
+ C: 0.892384434032225
3531
+ G: 0.03587185532259167
3532
+ T: 0.03587185532259167
3533
+ track: nukes
3534
+ extras:
3535
+ ambiguous_char: N
3536
+ ambiguous_emission_prob: 0.25
3537
+ germline: C
3538
+ name: IGHV2-5_star_02_233
3539
+ transitions:
3540
+ IGHV2-5_star_02_234: 1.0
3541
+ - !!python/object:python.hmmwriter.State
3542
+ emissions:
3543
+ probs:
3544
+ A: 0.03587185532259167
3545
+ C: 0.892384434032225
3546
+ G: 0.03587185532259167
3547
+ T: 0.03587185532259167
3548
+ track: nukes
3549
+ extras:
3550
+ ambiguous_char: N
3551
+ ambiguous_emission_prob: 0.25
3552
+ germline: C
3553
+ name: IGHV2-5_star_02_234
3554
+ transitions:
3555
+ IGHV2-5_star_02_235: 1.0
3556
+ - !!python/object:python.hmmwriter.State
3557
+ emissions:
3558
+ probs:
3559
+ A: 0.892384434032225
3560
+ C: 0.03587185532259167
3561
+ G: 0.03587185532259167
3562
+ T: 0.03587185532259167
3563
+ track: nukes
3564
+ extras:
3565
+ ambiguous_char: N
3566
+ ambiguous_emission_prob: 0.25
3567
+ germline: A
3568
+ name: IGHV2-5_star_02_235
3569
+ transitions:
3570
+ IGHV2-5_star_02_236: 1.0
3571
+ - !!python/object:python.hmmwriter.State
3572
+ emissions:
3573
+ probs:
3574
+ A: 0.03587185532259167
3575
+ C: 0.03587185532259167
3576
+ G: 0.892384434032225
3577
+ T: 0.03587185532259167
3578
+ track: nukes
3579
+ extras:
3580
+ ambiguous_char: N
3581
+ ambiguous_emission_prob: 0.25
3582
+ germline: G
3583
+ name: IGHV2-5_star_02_236
3584
+ transitions:
3585
+ IGHV2-5_star_02_237: 1.0
3586
+ - !!python/object:python.hmmwriter.State
3587
+ emissions:
3588
+ probs:
3589
+ A: 0.03587185532259167
3590
+ C: 0.03587185532259167
3591
+ G: 0.892384434032225
3592
+ T: 0.03587185532259167
3593
+ track: nukes
3594
+ extras:
3595
+ ambiguous_char: N
3596
+ ambiguous_emission_prob: 0.25
3597
+ germline: G
3598
+ name: IGHV2-5_star_02_237
3599
+ transitions:
3600
+ IGHV2-5_star_02_238: 1.0
3601
+ - !!python/object:python.hmmwriter.State
3602
+ emissions:
3603
+ probs:
3604
+ A: 0.03587185532259167
3605
+ C: 0.03587185532259167
3606
+ G: 0.03587185532259167
3607
+ T: 0.892384434032225
3608
+ track: nukes
3609
+ extras:
3610
+ ambiguous_char: N
3611
+ ambiguous_emission_prob: 0.25
3612
+ germline: T
3613
+ name: IGHV2-5_star_02_238
3614
+ transitions:
3615
+ IGHV2-5_star_02_239: 1.0
3616
+ - !!python/object:python.hmmwriter.State
3617
+ emissions:
3618
+ probs:
3619
+ A: 0.03587185532259167
3620
+ C: 0.03587185532259167
3621
+ G: 0.892384434032225
3622
+ T: 0.03587185532259167
3623
+ track: nukes
3624
+ extras:
3625
+ ambiguous_char: N
3626
+ ambiguous_emission_prob: 0.25
3627
+ germline: G
3628
+ name: IGHV2-5_star_02_239
3629
+ transitions:
3630
+ IGHV2-5_star_02_240: 1.0
3631
+ - !!python/object:python.hmmwriter.State
3632
+ emissions:
3633
+ probs:
3634
+ A: 0.03587185532259167
3635
+ C: 0.03587185532259167
3636
+ G: 0.892384434032225
3637
+ T: 0.03587185532259167
3638
+ track: nukes
3639
+ extras:
3640
+ ambiguous_char: N
3641
+ ambiguous_emission_prob: 0.25
3642
+ germline: G
3643
+ name: IGHV2-5_star_02_240
3644
+ transitions:
3645
+ IGHV2-5_star_02_241: 1.0
3646
+ - !!python/object:python.hmmwriter.State
3647
+ emissions:
3648
+ probs:
3649
+ A: 0.03587185532259167
3650
+ C: 0.03587185532259167
3651
+ G: 0.03587185532259167
3652
+ T: 0.892384434032225
3653
+ track: nukes
3654
+ extras:
3655
+ ambiguous_char: N
3656
+ ambiguous_emission_prob: 0.25
3657
+ germline: T
3658
+ name: IGHV2-5_star_02_241
3659
+ transitions:
3660
+ IGHV2-5_star_02_242: 1.0
3661
+ - !!python/object:python.hmmwriter.State
3662
+ emissions:
3663
+ probs:
3664
+ A: 0.03587185532259167
3665
+ C: 0.892384434032225
3666
+ G: 0.03587185532259167
3667
+ T: 0.03587185532259167
3668
+ track: nukes
3669
+ extras:
3670
+ ambiguous_char: N
3671
+ ambiguous_emission_prob: 0.25
3672
+ germline: C
3673
+ name: IGHV2-5_star_02_242
3674
+ transitions:
3675
+ IGHV2-5_star_02_243: 1.0
3676
+ - !!python/object:python.hmmwriter.State
3677
+ emissions:
3678
+ probs:
3679
+ A: 0.03587185532259167
3680
+ C: 0.892384434032225
3681
+ G: 0.03587185532259167
3682
+ T: 0.03587185532259167
3683
+ track: nukes
3684
+ extras:
3685
+ ambiguous_char: N
3686
+ ambiguous_emission_prob: 0.25
3687
+ germline: C
3688
+ name: IGHV2-5_star_02_243
3689
+ transitions:
3690
+ IGHV2-5_star_02_244: 1.0
3691
+ - !!python/object:python.hmmwriter.State
3692
+ emissions:
3693
+ probs:
3694
+ A: 0.03587185532259167
3695
+ C: 0.03587185532259167
3696
+ G: 0.03587185532259167
3697
+ T: 0.892384434032225
3698
+ track: nukes
3699
+ extras:
3700
+ ambiguous_char: N
3701
+ ambiguous_emission_prob: 0.25
3702
+ germline: T
3703
+ name: IGHV2-5_star_02_244
3704
+ transitions:
3705
+ IGHV2-5_star_02_245: 1.0
3706
+ - !!python/object:python.hmmwriter.State
3707
+ emissions:
3708
+ probs:
3709
+ A: 0.03587185532259167
3710
+ C: 0.03587185532259167
3711
+ G: 0.03587185532259167
3712
+ T: 0.892384434032225
3713
+ track: nukes
3714
+ extras:
3715
+ ambiguous_char: N
3716
+ ambiguous_emission_prob: 0.25
3717
+ germline: T
3718
+ name: IGHV2-5_star_02_245
3719
+ transitions:
3720
+ IGHV2-5_star_02_246: 1.0
3721
+ - !!python/object:python.hmmwriter.State
3722
+ emissions:
3723
+ probs:
3724
+ A: 0.892384434032225
3725
+ C: 0.03587185532259167
3726
+ G: 0.03587185532259167
3727
+ T: 0.03587185532259167
3728
+ track: nukes
3729
+ extras:
3730
+ ambiguous_char: N
3731
+ ambiguous_emission_prob: 0.25
3732
+ germline: A
3733
+ name: IGHV2-5_star_02_246
3734
+ transitions:
3735
+ IGHV2-5_star_02_247: 1.0
3736
+ - !!python/object:python.hmmwriter.State
3737
+ emissions:
3738
+ probs:
3739
+ A: 0.03587185532259167
3740
+ C: 0.892384434032225
3741
+ G: 0.03587185532259167
3742
+ T: 0.03587185532259167
3743
+ track: nukes
3744
+ extras:
3745
+ ambiguous_char: N
3746
+ ambiguous_emission_prob: 0.25
3747
+ germline: C
3748
+ name: IGHV2-5_star_02_247
3749
+ transitions:
3750
+ IGHV2-5_star_02_248: 1.0
3751
+ - !!python/object:python.hmmwriter.State
3752
+ emissions:
3753
+ probs:
3754
+ A: 0.892384434032225
3755
+ C: 0.03587185532259167
3756
+ G: 0.03587185532259167
3757
+ T: 0.03587185532259167
3758
+ track: nukes
3759
+ extras:
3760
+ ambiguous_char: N
3761
+ ambiguous_emission_prob: 0.25
3762
+ germline: A
3763
+ name: IGHV2-5_star_02_248
3764
+ transitions:
3765
+ IGHV2-5_star_02_249: 1.0
3766
+ - !!python/object:python.hmmwriter.State
3767
+ emissions:
3768
+ probs:
3769
+ A: 0.8875
3770
+ C: 0.0375
3771
+ G: 0.0375
3772
+ T: 0.0375
3773
+ track: nukes
3774
+ extras:
3775
+ ambiguous_char: N
3776
+ ambiguous_emission_prob: 0.25
3777
+ germline: A
3778
+ name: IGHV2-5_star_02_249
3779
+ transitions:
3780
+ IGHV2-5_star_02_250: 1.0
3781
+ - !!python/object:python.hmmwriter.State
3782
+ emissions:
3783
+ probs:
3784
+ A: 0.03587185532259167
3785
+ C: 0.03587185532259167
3786
+ G: 0.03587185532259167
3787
+ T: 0.892384434032225
3788
+ track: nukes
3789
+ extras:
3790
+ ambiguous_char: N
3791
+ ambiguous_emission_prob: 0.25
3792
+ germline: T
3793
+ name: IGHV2-5_star_02_250
3794
+ transitions:
3795
+ IGHV2-5_star_02_251: 1.0
3796
+ - !!python/object:python.hmmwriter.State
3797
+ emissions:
3798
+ probs:
3799
+ A: 0.03587185532259167
3800
+ C: 0.03587185532259167
3801
+ G: 0.892384434032225
3802
+ T: 0.03587185532259167
3803
+ track: nukes
3804
+ extras:
3805
+ ambiguous_char: N
3806
+ ambiguous_emission_prob: 0.25
3807
+ germline: G
3808
+ name: IGHV2-5_star_02_251
3809
+ transitions:
3810
+ IGHV2-5_star_02_252: 1.0
3811
+ - !!python/object:python.hmmwriter.State
3812
+ emissions:
3813
+ probs:
3814
+ A: 0.892384434032225
3815
+ C: 0.03587185532259167
3816
+ G: 0.03587185532259167
3817
+ T: 0.03587185532259167
3818
+ track: nukes
3819
+ extras:
3820
+ ambiguous_char: N
3821
+ ambiguous_emission_prob: 0.25
3822
+ germline: A
3823
+ name: IGHV2-5_star_02_252
3824
+ transitions:
3825
+ IGHV2-5_star_02_253: 1.0
3826
+ - !!python/object:python.hmmwriter.State
3827
+ emissions:
3828
+ probs:
3829
+ A: 0.03587185532259167
3830
+ C: 0.892384434032225
3831
+ G: 0.03587185532259167
3832
+ T: 0.03587185532259167
3833
+ track: nukes
3834
+ extras:
3835
+ ambiguous_char: N
3836
+ ambiguous_emission_prob: 0.25
3837
+ germline: C
3838
+ name: IGHV2-5_star_02_253
3839
+ transitions:
3840
+ IGHV2-5_star_02_254: 1.0
3841
+ - !!python/object:python.hmmwriter.State
3842
+ emissions:
3843
+ probs:
3844
+ A: 0.03587185532259167
3845
+ C: 0.892384434032225
3846
+ G: 0.03587185532259167
3847
+ T: 0.03587185532259167
3848
+ track: nukes
3849
+ extras:
3850
+ ambiguous_char: N
3851
+ ambiguous_emission_prob: 0.25
3852
+ germline: C
3853
+ name: IGHV2-5_star_02_254
3854
+ transitions:
3855
+ IGHV2-5_star_02_255: 1.0
3856
+ - !!python/object:python.hmmwriter.State
3857
+ emissions:
3858
+ probs:
3859
+ A: 0.892384434032225
3860
+ C: 0.03587185532259167
3861
+ G: 0.03587185532259167
3862
+ T: 0.03587185532259167
3863
+ track: nukes
3864
+ extras:
3865
+ ambiguous_char: N
3866
+ ambiguous_emission_prob: 0.25
3867
+ germline: A
3868
+ name: IGHV2-5_star_02_255
3869
+ transitions:
3870
+ IGHV2-5_star_02_256: 1.0
3871
+ - !!python/object:python.hmmwriter.State
3872
+ emissions:
3873
+ probs:
3874
+ A: 0.892384434032225
3875
+ C: 0.03587185532259167
3876
+ G: 0.03587185532259167
3877
+ T: 0.03587185532259167
3878
+ track: nukes
3879
+ extras:
3880
+ ambiguous_char: N
3881
+ ambiguous_emission_prob: 0.25
3882
+ germline: A
3883
+ name: IGHV2-5_star_02_256
3884
+ transitions:
3885
+ IGHV2-5_star_02_257: 1.0
3886
+ - !!python/object:python.hmmwriter.State
3887
+ emissions:
3888
+ probs:
3889
+ A: 0.03587185532259167
3890
+ C: 0.892384434032225
3891
+ G: 0.03587185532259167
3892
+ T: 0.03587185532259167
3893
+ track: nukes
3894
+ extras:
3895
+ ambiguous_char: N
3896
+ ambiguous_emission_prob: 0.25
3897
+ germline: C
3898
+ name: IGHV2-5_star_02_257
3899
+ transitions:
3900
+ IGHV2-5_star_02_258: 1.0
3901
+ - !!python/object:python.hmmwriter.State
3902
+ emissions:
3903
+ probs:
3904
+ A: 0.892384434032225
3905
+ C: 0.03587185532259167
3906
+ G: 0.03587185532259167
3907
+ T: 0.03587185532259167
3908
+ track: nukes
3909
+ extras:
3910
+ ambiguous_char: N
3911
+ ambiguous_emission_prob: 0.25
3912
+ germline: A
3913
+ name: IGHV2-5_star_02_258
3914
+ transitions:
3915
+ IGHV2-5_star_02_259: 1.0
3916
+ - !!python/object:python.hmmwriter.State
3917
+ emissions:
3918
+ probs:
3919
+ A: 0.03587185532259167
3920
+ C: 0.03587185532259167
3921
+ G: 0.03587185532259167
3922
+ T: 0.892384434032225
3923
+ track: nukes
3924
+ extras:
3925
+ ambiguous_char: N
3926
+ ambiguous_emission_prob: 0.25
3927
+ germline: T
3928
+ name: IGHV2-5_star_02_259
3929
+ transitions:
3930
+ IGHV2-5_star_02_260: 1.0
3931
+ - !!python/object:python.hmmwriter.State
3932
+ emissions:
3933
+ probs:
3934
+ A: 0.03587185532259167
3935
+ C: 0.03587185532259167
3936
+ G: 0.892384434032225
3937
+ T: 0.03587185532259167
3938
+ track: nukes
3939
+ extras:
3940
+ ambiguous_char: N
3941
+ ambiguous_emission_prob: 0.25
3942
+ germline: G
3943
+ name: IGHV2-5_star_02_260
3944
+ transitions:
3945
+ IGHV2-5_star_02_261: 1.0
3946
+ - !!python/object:python.hmmwriter.State
3947
+ emissions:
3948
+ probs:
3949
+ A: 0.03587185532259167
3950
+ C: 0.03587185532259167
3951
+ G: 0.892384434032225
3952
+ T: 0.03587185532259167
3953
+ track: nukes
3954
+ extras:
3955
+ ambiguous_char: N
3956
+ ambiguous_emission_prob: 0.25
3957
+ germline: G
3958
+ name: IGHV2-5_star_02_261
3959
+ transitions:
3960
+ IGHV2-5_star_02_262: 1.0
3961
+ - !!python/object:python.hmmwriter.State
3962
+ emissions:
3963
+ probs:
3964
+ A: 0.892384434032225
3965
+ C: 0.03587185532259167
3966
+ G: 0.03587185532259167
3967
+ T: 0.03587185532259167
3968
+ track: nukes
3969
+ extras:
3970
+ ambiguous_char: N
3971
+ ambiguous_emission_prob: 0.25
3972
+ germline: A
3973
+ name: IGHV2-5_star_02_262
3974
+ transitions:
3975
+ IGHV2-5_star_02_263: 1.0
3976
+ - !!python/object:python.hmmwriter.State
3977
+ emissions:
3978
+ probs:
3979
+ A: 0.0375
3980
+ C: 0.8875
3981
+ G: 0.0375
3982
+ T: 0.0375
3983
+ track: nukes
3984
+ extras:
3985
+ ambiguous_char: N
3986
+ ambiguous_emission_prob: 0.25
3987
+ germline: C
3988
+ name: IGHV2-5_star_02_263
3989
+ transitions:
3990
+ IGHV2-5_star_02_264: 1.0
3991
+ - !!python/object:python.hmmwriter.State
3992
+ emissions:
3993
+ probs:
3994
+ A: 0.03587185532259167
3995
+ C: 0.892384434032225
3996
+ G: 0.03587185532259167
3997
+ T: 0.03587185532259167
3998
+ track: nukes
3999
+ extras:
4000
+ ambiguous_char: N
4001
+ ambiguous_emission_prob: 0.25
4002
+ germline: C
4003
+ name: IGHV2-5_star_02_264
4004
+ transitions:
4005
+ IGHV2-5_star_02_265: 1.0
4006
+ - !!python/object:python.hmmwriter.State
4007
+ emissions:
4008
+ probs:
4009
+ A: 0.03587185532259167
4010
+ C: 0.892384434032225
4011
+ G: 0.03587185532259167
4012
+ T: 0.03587185532259167
4013
+ track: nukes
4014
+ extras:
4015
+ ambiguous_char: N
4016
+ ambiguous_emission_prob: 0.25
4017
+ germline: C
4018
+ name: IGHV2-5_star_02_265
4019
+ transitions:
4020
+ IGHV2-5_star_02_266: 1.0
4021
+ - !!python/object:python.hmmwriter.State
4022
+ emissions:
4023
+ probs:
4024
+ A: 0.03587185532259167
4025
+ C: 0.03587185532259167
4026
+ G: 0.03587185532259167
4027
+ T: 0.892384434032225
4028
+ track: nukes
4029
+ extras:
4030
+ ambiguous_char: N
4031
+ ambiguous_emission_prob: 0.25
4032
+ germline: T
4033
+ name: IGHV2-5_star_02_266
4034
+ transitions:
4035
+ IGHV2-5_star_02_267: 1.0
4036
+ - !!python/object:python.hmmwriter.State
4037
+ emissions:
4038
+ probs:
4039
+ A: 0.03587185532259167
4040
+ C: 0.03587185532259167
4041
+ G: 0.892384434032225
4042
+ T: 0.03587185532259167
4043
+ track: nukes
4044
+ extras:
4045
+ ambiguous_char: N
4046
+ ambiguous_emission_prob: 0.25
4047
+ germline: G
4048
+ name: IGHV2-5_star_02_267
4049
+ transitions:
4050
+ IGHV2-5_star_02_268: 1.0
4051
+ - !!python/object:python.hmmwriter.State
4052
+ emissions:
4053
+ probs:
4054
+ A: 0.03587185532259167
4055
+ C: 0.03587185532259167
4056
+ G: 0.03587185532259167
4057
+ T: 0.892384434032225
4058
+ track: nukes
4059
+ extras:
4060
+ ambiguous_char: N
4061
+ ambiguous_emission_prob: 0.25
4062
+ germline: T
4063
+ name: IGHV2-5_star_02_268
4064
+ transitions:
4065
+ IGHV2-5_star_02_269: 1.0
4066
+ - !!python/object:python.hmmwriter.State
4067
+ emissions:
4068
+ probs:
4069
+ A: 0.03587185532259167
4070
+ C: 0.03587185532259167
4071
+ G: 0.892384434032225
4072
+ T: 0.03587185532259167
4073
+ track: nukes
4074
+ extras:
4075
+ ambiguous_char: N
4076
+ ambiguous_emission_prob: 0.25
4077
+ germline: G
4078
+ name: IGHV2-5_star_02_269
4079
+ transitions:
4080
+ IGHV2-5_star_02_270: 1.0
4081
+ - !!python/object:python.hmmwriter.State
4082
+ emissions:
4083
+ probs:
4084
+ A: 0.03587185532259167
4085
+ C: 0.03587185532259167
4086
+ G: 0.892384434032225
4087
+ T: 0.03587185532259167
4088
+ track: nukes
4089
+ extras:
4090
+ ambiguous_char: N
4091
+ ambiguous_emission_prob: 0.25
4092
+ germline: G
4093
+ name: IGHV2-5_star_02_270
4094
+ transitions:
4095
+ IGHV2-5_star_02_271: 1.0
4096
+ - !!python/object:python.hmmwriter.State
4097
+ emissions:
4098
+ probs:
4099
+ A: 0.892384434032225
4100
+ C: 0.03587185532259167
4101
+ G: 0.03587185532259167
4102
+ T: 0.03587185532259167
4103
+ track: nukes
4104
+ extras:
4105
+ ambiguous_char: N
4106
+ ambiguous_emission_prob: 0.25
4107
+ germline: A
4108
+ name: IGHV2-5_star_02_271
4109
+ transitions:
4110
+ IGHV2-5_star_02_272: 1.0
4111
+ - !!python/object:python.hmmwriter.State
4112
+ emissions:
4113
+ probs:
4114
+ A: 0.03587185532259167
4115
+ C: 0.892384434032225
4116
+ G: 0.03587185532259167
4117
+ T: 0.03587185532259167
4118
+ track: nukes
4119
+ extras:
4120
+ ambiguous_char: N
4121
+ ambiguous_emission_prob: 0.25
4122
+ germline: C
4123
+ name: IGHV2-5_star_02_272
4124
+ transitions:
4125
+ IGHV2-5_star_02_273: 1.0
4126
+ - !!python/object:python.hmmwriter.State
4127
+ emissions:
4128
+ probs:
4129
+ A: 0.892384434032225
4130
+ C: 0.03587185532259167
4131
+ G: 0.03587185532259167
4132
+ T: 0.03587185532259167
4133
+ track: nukes
4134
+ extras:
4135
+ ambiguous_char: N
4136
+ ambiguous_emission_prob: 0.25
4137
+ germline: A
4138
+ name: IGHV2-5_star_02_273
4139
+ transitions:
4140
+ IGHV2-5_star_02_274: 1.0
4141
+ - !!python/object:python.hmmwriter.State
4142
+ emissions:
4143
+ probs:
4144
+ A: 0.03587185532259167
4145
+ C: 0.892384434032225
4146
+ G: 0.03587185532259167
4147
+ T: 0.03587185532259167
4148
+ track: nukes
4149
+ extras:
4150
+ ambiguous_char: N
4151
+ ambiguous_emission_prob: 0.25
4152
+ germline: C
4153
+ name: IGHV2-5_star_02_274
4154
+ transitions:
4155
+ IGHV2-5_star_02_275: 1.0
4156
+ - !!python/object:python.hmmwriter.State
4157
+ emissions:
4158
+ probs:
4159
+ A: 0.892384434032225
4160
+ C: 0.03587185532259167
4161
+ G: 0.03587185532259167
4162
+ T: 0.03587185532259167
4163
+ track: nukes
4164
+ extras:
4165
+ ambiguous_char: N
4166
+ ambiguous_emission_prob: 0.25
4167
+ germline: A
4168
+ name: IGHV2-5_star_02_275
4169
+ transitions:
4170
+ IGHV2-5_star_02_276: 1.0
4171
+ - !!python/object:python.hmmwriter.State
4172
+ emissions:
4173
+ probs:
4174
+ A: 0.03587185532259167
4175
+ C: 0.03587185532259167
4176
+ G: 0.892384434032225
4177
+ T: 0.03587185532259167
4178
+ track: nukes
4179
+ extras:
4180
+ ambiguous_char: N
4181
+ ambiguous_emission_prob: 0.25
4182
+ germline: G
4183
+ name: IGHV2-5_star_02_276
4184
+ transitions:
4185
+ IGHV2-5_star_02_277: 1.0
4186
+ - !!python/object:python.hmmwriter.State
4187
+ emissions:
4188
+ probs:
4189
+ A: 0.0375
4190
+ C: 0.8875
4191
+ G: 0.0375
4192
+ T: 0.0375
4193
+ track: nukes
4194
+ extras:
4195
+ ambiguous_char: N
4196
+ ambiguous_emission_prob: 0.25
4197
+ germline: C
4198
+ name: IGHV2-5_star_02_277
4199
+ transitions:
4200
+ IGHV2-5_star_02_278: 1.0
4201
+ - !!python/object:python.hmmwriter.State
4202
+ emissions:
4203
+ probs:
4204
+ A: 0.03587185532259167
4205
+ C: 0.892384434032225
4206
+ G: 0.03587185532259167
4207
+ T: 0.03587185532259167
4208
+ track: nukes
4209
+ extras:
4210
+ ambiguous_char: N
4211
+ ambiguous_emission_prob: 0.25
4212
+ germline: C
4213
+ name: IGHV2-5_star_02_278
4214
+ transitions:
4215
+ IGHV2-5_star_02_279: 1.0
4216
+ - !!python/object:python.hmmwriter.State
4217
+ emissions:
4218
+ probs:
4219
+ A: 0.892384434032225
4220
+ C: 0.03587185532259167
4221
+ G: 0.03587185532259167
4222
+ T: 0.03587185532259167
4223
+ track: nukes
4224
+ extras:
4225
+ ambiguous_char: N
4226
+ ambiguous_emission_prob: 0.25
4227
+ germline: A
4228
+ name: IGHV2-5_star_02_279
4229
+ transitions:
4230
+ IGHV2-5_star_02_280: 1.0
4231
+ - !!python/object:python.hmmwriter.State
4232
+ emissions:
4233
+ probs:
4234
+ A: 0.03587185532259167
4235
+ C: 0.892384434032225
4236
+ G: 0.03587185532259167
4237
+ T: 0.03587185532259167
4238
+ track: nukes
4239
+ extras:
4240
+ ambiguous_char: N
4241
+ ambiguous_emission_prob: 0.25
4242
+ germline: C
4243
+ name: IGHV2-5_star_02_280
4244
+ transitions:
4245
+ IGHV2-5_star_02_281: 1.0
4246
+ - !!python/object:python.hmmwriter.State
4247
+ emissions:
4248
+ probs:
4249
+ A: 0.892384434032225
4250
+ C: 0.03587185532259167
4251
+ G: 0.03587185532259167
4252
+ T: 0.03587185532259167
4253
+ track: nukes
4254
+ extras:
4255
+ ambiguous_char: N
4256
+ ambiguous_emission_prob: 0.25
4257
+ germline: A
4258
+ name: IGHV2-5_star_02_281
4259
+ transitions:
4260
+ IGHV2-5_star_02_282: 1.0
4261
+ - !!python/object:python.hmmwriter.State
4262
+ emissions:
4263
+ probs:
4264
+ A: 0.03587185532259167
4265
+ C: 0.03587185532259167
4266
+ G: 0.03587185532259167
4267
+ T: 0.892384434032225
4268
+ track: nukes
4269
+ extras:
4270
+ ambiguous_char: N
4271
+ ambiguous_emission_prob: 0.25
4272
+ germline: T
4273
+ name: IGHV2-5_star_02_282
4274
+ transitions:
4275
+ IGHV2-5_star_02_283: 1.0
4276
+ - !!python/object:python.hmmwriter.State
4277
+ emissions:
4278
+ probs:
4279
+ A: 0.892384434032225
4280
+ C: 0.03587185532259167
4281
+ G: 0.03587185532259167
4282
+ T: 0.03587185532259167
4283
+ track: nukes
4284
+ extras:
4285
+ ambiguous_char: N
4286
+ ambiguous_emission_prob: 0.25
4287
+ germline: A
4288
+ name: IGHV2-5_star_02_283
4289
+ transitions:
4290
+ IGHV2-5_star_02_284: 1.0
4291
+ - !!python/object:python.hmmwriter.State
4292
+ emissions:
4293
+ probs:
4294
+ A: 0.03587185532259167
4295
+ C: 0.03587185532259167
4296
+ G: 0.03587185532259167
4297
+ T: 0.892384434032225
4298
+ track: nukes
4299
+ extras:
4300
+ ambiguous_char: N
4301
+ ambiguous_emission_prob: 0.25
4302
+ germline: T
4303
+ name: IGHV2-5_star_02_284
4304
+ transitions:
4305
+ IGHV2-5_star_02_285: 1.0
4306
+ - !!python/object:python.hmmwriter.State
4307
+ emissions:
4308
+ probs:
4309
+ A: 0.03587185532259167
4310
+ C: 0.03587185532259167
4311
+ G: 0.03587185532259167
4312
+ T: 0.892384434032225
4313
+ track: nukes
4314
+ extras:
4315
+ ambiguous_char: N
4316
+ ambiguous_emission_prob: 0.25
4317
+ germline: T
4318
+ name: IGHV2-5_star_02_285
4319
+ transitions:
4320
+ IGHV2-5_star_02_286: 1.0
4321
+ - !!python/object:python.hmmwriter.State
4322
+ emissions:
4323
+ probs:
4324
+ A: 0.892384434032225
4325
+ C: 0.03587185532259167
4326
+ G: 0.03587185532259167
4327
+ T: 0.03587185532259167
4328
+ track: nukes
4329
+ extras:
4330
+ ambiguous_char: N
4331
+ ambiguous_emission_prob: 0.25
4332
+ germline: A
4333
+ name: IGHV2-5_star_02_286
4334
+ transitions:
4335
+ IGHV2-5_star_02_287: 1.0
4336
+ - !!python/object:python.hmmwriter.State
4337
+ emissions:
4338
+ probs:
4339
+ A: 0.03587185532259167
4340
+ C: 0.892384434032225
4341
+ G: 0.03587185532259167
4342
+ T: 0.03587185532259167
4343
+ track: nukes
4344
+ extras:
4345
+ ambiguous_char: N
4346
+ ambiguous_emission_prob: 0.25
4347
+ germline: C
4348
+ name: IGHV2-5_star_02_287
4349
+ transitions:
4350
+ IGHV2-5_star_02_288: 1.0
4351
+ - !!python/object:python.hmmwriter.State
4352
+ emissions:
4353
+ probs:
4354
+ A: 0.03587185532259167
4355
+ C: 0.03587185532259167
4356
+ G: 0.03587185532259167
4357
+ T: 0.892384434032225
4358
+ track: nukes
4359
+ extras:
4360
+ ambiguous_char: N
4361
+ ambiguous_emission_prob: 0.25
4362
+ germline: T
4363
+ name: IGHV2-5_star_02_288
4364
+ transitions:
4365
+ IGHV2-5_star_02_289: 1.0
4366
+ - !!python/object:python.hmmwriter.State
4367
+ emissions:
4368
+ probs:
4369
+ A: 0.03587185532259167
4370
+ C: 0.03587185532259167
4371
+ G: 0.892384434032225
4372
+ T: 0.03587185532259167
4373
+ track: nukes
4374
+ extras:
4375
+ ambiguous_char: N
4376
+ ambiguous_emission_prob: 0.25
4377
+ germline: G
4378
+ name: IGHV2-5_star_02_289
4379
+ transitions:
4380
+ IGHV2-5_star_02_290: 1.0
4381
+ - !!python/object:python.hmmwriter.State
4382
+ emissions:
4383
+ probs:
4384
+ A: 0.03587185532259167
4385
+ C: 0.03587185532259167
4386
+ G: 0.03587185532259167
4387
+ T: 0.892384434032225
4388
+ track: nukes
4389
+ extras:
4390
+ ambiguous_char: N
4391
+ ambiguous_emission_prob: 0.25
4392
+ germline: T
4393
+ name: IGHV2-5_star_02_290
4394
+ transitions:
4395
+ IGHV2-5_star_02_291: 0.8888888888888888
4396
+ end: 0.1111111111111111
4397
+ - !!python/object:python.hmmwriter.State
4398
+ emissions:
4399
+ probs:
4400
+ A: 0.03587185532259167
4401
+ C: 0.03587185532259167
4402
+ G: 0.892384434032225
4403
+ T: 0.03587185532259167
4404
+ track: nukes
4405
+ extras:
4406
+ ambiguous_char: N
4407
+ ambiguous_emission_prob: 0.25
4408
+ germline: G
4409
+ name: IGHV2-5_star_02_291
4410
+ transitions:
4411
+ IGHV2-5_star_02_292: 0.8888888888888888
4412
+ end: 0.1111111111111111
4413
+ - !!python/object:python.hmmwriter.State
4414
+ emissions:
4415
+ probs:
4416
+ A: 0.03565250989792104
4417
+ C: 0.8930424703062368
4418
+ G: 0.03565250989792104
4419
+ T: 0.03565250989792104
4420
+ track: nukes
4421
+ extras:
4422
+ ambiguous_char: N
4423
+ ambiguous_emission_prob: 0.25
4424
+ germline: C
4425
+ name: IGHV2-5_star_02_292
4426
+ transitions:
4427
+ IGHV2-5_star_02_293: 0.8888888888888888
4428
+ end: 0.1111111111111111
4429
+ - !!python/object:python.hmmwriter.State
4430
+ emissions:
4431
+ probs:
4432
+ A: 0.8937005065802488
4433
+ C: 0.03543316447325041
4434
+ G: 0.03543316447325041
4435
+ T: 0.03543316447325041
4436
+ track: nukes
4437
+ extras:
4438
+ ambiguous_char: N
4439
+ ambiguous_emission_prob: 0.25
4440
+ germline: A
4441
+ name: IGHV2-5_star_02_293
4442
+ transitions:
4443
+ IGHV2-5_star_02_294: 0.8888888888888888
4444
+ end: 0.1111111111111111
4445
+ - !!python/object:python.hmmwriter.State
4446
+ emissions:
4447
+ probs:
4448
+ A: 0.03521381904857977
4449
+ C: 0.8943585428542606
4450
+ G: 0.03521381904857977
4451
+ T: 0.03521381904857977
4452
+ track: nukes
4453
+ extras:
4454
+ ambiguous_char: N
4455
+ ambiguous_emission_prob: 0.25
4456
+ germline: C
4457
+ name: IGHV2-5_star_02_294
4458
+ transitions:
4459
+ IGHV2-5_star_02_295: 1.0
4460
+ - !!python/object:python.hmmwriter.State
4461
+ emissions:
4462
+ probs:
4463
+ A: 0.8950165791282726
4464
+ C: 0.03499447362390914
4465
+ G: 0.03499447362390914
4466
+ T: 0.03499447362390914
4467
+ track: nukes
4468
+ extras:
4469
+ ambiguous_char: N
4470
+ ambiguous_emission_prob: 0.25
4471
+ germline: A
4472
+ name: IGHV2-5_star_02_295
4473
+ transitions:
4474
+ IGHV2-5_star_02_296: 0.9629629629629629
4475
+ end: 0.03703703703703705
4476
+ - !!python/object:python.hmmwriter.State
4477
+ emissions:
4478
+ probs:
4479
+ A: 0.0347751281992385
4480
+ C: 0.8956746154022844
4481
+ G: 0.0347751281992385
4482
+ T: 0.0347751281992385
4483
+ track: nukes
4484
+ extras:
4485
+ ambiguous_char: N
4486
+ ambiguous_emission_prob: 0.25
4487
+ germline: C
4488
+ name: IGHV2-5_star_02_296
4489
+ transitions:
4490
+ IGHV2-5_star_02_297: 0.9259259259259259
4491
+ end: 0.07407407407407408
4492
+ - !!python/object:python.hmmwriter.State
4493
+ emissions:
4494
+ probs:
4495
+ A: 0.8963326516762964
4496
+ C: 0.034555782774567875
4497
+ G: 0.034555782774567875
4498
+ T: 0.034555782774567875
4499
+ track: nukes
4500
+ extras:
4501
+ ambiguous_char: N
4502
+ ambiguous_emission_prob: 0.25
4503
+ germline: A
4504
+ name: IGHV2-5_star_02_297
4505
+ transitions:
4506
+ IGHV2-5_star_02_298: 0.8888888888888888
4507
+ end: 0.1111111111111111
4508
+ - !!python/object:python.hmmwriter.State
4509
+ emissions:
4510
+ probs:
4511
+ A: 0.03377232135228427
4512
+ C: 0.03377232135228427
4513
+ G: 0.8986830359431471
4514
+ T: 0.03377232135228427
4515
+ track: nukes
4516
+ extras:
4517
+ ambiguous_char: N
4518
+ ambiguous_emission_prob: 0.25
4519
+ germline: G
4520
+ name: IGHV2-5_star_02_298
4521
+ transitions:
4522
+ IGHV2-5_star_02_299: 0.8888888888888888
4523
+ end: 0.1111111111111111
4524
+ - !!python/object:python.hmmwriter.State
4525
+ emissions:
4526
+ probs:
4527
+ A: 0.8984948982207396
4528
+ C: 0.03383503392642012
4529
+ G: 0.03383503392642012
4530
+ T: 0.03383503392642012
4531
+ track: nukes
4532
+ extras:
4533
+ ambiguous_char: N
4534
+ ambiguous_emission_prob: 0.25
4535
+ germline: A
4536
+ name: IGHV2-5_star_02_299
4537
+ transitions:
4538
+ IGHV2-5_star_02_300: 0.8888888888888888
4539
+ end: 0.1111111111111111
4540
+ - !!python/object:python.hmmwriter.State
4541
+ emissions:
4542
+ probs:
4543
+ A: 0.03389774650055598
4544
+ C: 0.898306760498332
4545
+ G: 0.03389774650055598
4546
+ T: 0.03389774650055598
4547
+ track: nukes
4548
+ extras:
4549
+ ambiguous_char: N
4550
+ ambiguous_emission_prob: 0.25
4551
+ germline: C
4552
+ name: IGHV2-5_star_02_300
4553
+ transitions:
4554
+ end: 1.0
4555
+ tracks:
4556
+ nukes:
4557
+ - A
4558
+ - C
4559
+ - G
4560
+ - T