partis-bcr 1.0.11.post1.dev1__cp312-cp312-manylinux1_x86_64.whl → 1.0.11.post1.dev7__cp312-cp312-manylinux1_x86_64.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (655) hide show
  1. bin/partis +1 -1
  2. bin/partis-test.py +6 -0
  3. bin/partis.py +1 -1
  4. {partis_bcr-1.0.11.post1.dev1.data → partis_bcr-1.0.11.post1.dev7.data}/scripts/partis-test.py +6 -0
  5. {partis_bcr-1.0.11.post1.dev1.dist-info → partis_bcr-1.0.11.post1.dev7.dist-info}/METADATA +1 -1
  6. {partis_bcr-1.0.11.post1.dev1.dist-info → partis_bcr-1.0.11.post1.dev7.dist-info}/RECORD +655 -127
  7. python/recombinator.py +2 -0
  8. python/treegenerator.py +1 -1
  9. test/new-results/annotate-new-simu-annotation-performance/hmm/boundaries/d_3p_del.csv +7 -0
  10. test/new-results/annotate-new-simu-annotation-performance/hmm/boundaries/d_5p_del.csv +8 -0
  11. test/new-results/annotate-new-simu-annotation-performance/hmm/boundaries/dj_insertion.csv +8 -0
  12. test/new-results/annotate-new-simu-annotation-performance/hmm/boundaries/fv_insertion.csv +10 -0
  13. test/new-results/annotate-new-simu-annotation-performance/hmm/boundaries/j_3p_del.csv +4 -0
  14. test/new-results/annotate-new-simu-annotation-performance/hmm/boundaries/j_5p_del.csv +8 -0
  15. test/new-results/annotate-new-simu-annotation-performance/hmm/boundaries/jf_insertion.csv +4 -0
  16. test/new-results/annotate-new-simu-annotation-performance/hmm/boundaries/shm_indel_length.csv +8 -0
  17. test/new-results/annotate-new-simu-annotation-performance/hmm/boundaries/v_3p_del.csv +4 -0
  18. test/new-results/annotate-new-simu-annotation-performance/hmm/boundaries/v_5p_del.csv +4 -0
  19. test/new-results/annotate-new-simu-annotation-performance/hmm/boundaries/vd_insertion.csv +8 -0
  20. test/new-results/annotate-new-simu-annotation-performance/hmm/gene-call/d_allele_fraction_correct_vs_per_gene_support.csv +28 -0
  21. test/new-results/annotate-new-simu-annotation-performance/hmm/gene-call/d_fraction_correct_vs_mute_freq.csv +28 -0
  22. test/new-results/annotate-new-simu-annotation-performance/hmm/gene-call/d_gene.csv +5 -0
  23. test/new-results/annotate-new-simu-annotation-performance/hmm/gene-call/j_allele_fraction_correct_vs_per_gene_support.csv +28 -0
  24. test/new-results/annotate-new-simu-annotation-performance/hmm/gene-call/j_fraction_correct_vs_mute_freq.csv +28 -0
  25. test/new-results/annotate-new-simu-annotation-performance/hmm/gene-call/j_gene.csv +5 -0
  26. test/new-results/annotate-new-simu-annotation-performance/hmm/gene-call/v_allele_fraction_correct_vs_per_gene_support.csv +28 -0
  27. test/new-results/annotate-new-simu-annotation-performance/hmm/gene-call/v_fraction_correct_vs_mute_freq.csv +28 -0
  28. test/new-results/annotate-new-simu-annotation-performance/hmm/gene-call/v_gene.csv +5 -0
  29. test/new-results/annotate-new-simu-annotation-performance/hmm/mutation/cdr3_hamming_to_true_naive.csv +7 -0
  30. test/new-results/annotate-new-simu-annotation-performance/hmm/mutation/cdr3_muted_bases.csv +7 -0
  31. test/new-results/annotate-new-simu-annotation-performance/hmm/mutation/d_hamming_to_true_naive.csv +5 -0
  32. test/new-results/annotate-new-simu-annotation-performance/hmm/mutation/d_muted_bases.csv +6 -0
  33. test/new-results/annotate-new-simu-annotation-performance/hmm/mutation/hamming_to_true_naive.csv +7 -0
  34. test/new-results/annotate-new-simu-annotation-performance/hmm/mutation/j_hamming_to_true_naive.csv +4 -0
  35. test/new-results/annotate-new-simu-annotation-performance/hmm/mutation/j_muted_bases.csv +5 -0
  36. test/new-results/annotate-new-simu-annotation-performance/hmm/mutation/mute_freqs.csv +28 -0
  37. test/new-results/annotate-new-simu-annotation-performance/hmm/mutation/muted_bases.csv +7 -0
  38. test/new-results/annotate-new-simu-annotation-performance/hmm/mutation/v_hamming_to_true_naive.csv +4 -0
  39. test/new-results/annotate-new-simu-annotation-performance/hmm/mutation/v_muted_bases.csv +4 -0
  40. test/new-results/annotate-new-simu-annotation-performance/sw/boundaries/d_3p_del.csv +8 -0
  41. test/new-results/annotate-new-simu-annotation-performance/sw/boundaries/d_5p_del.csv +6 -0
  42. test/new-results/annotate-new-simu-annotation-performance/sw/boundaries/dj_insertion.csv +7 -0
  43. test/new-results/annotate-new-simu-annotation-performance/sw/boundaries/fv_insertion.csv +4 -0
  44. test/new-results/annotate-new-simu-annotation-performance/sw/boundaries/j_3p_del.csv +4 -0
  45. test/new-results/annotate-new-simu-annotation-performance/sw/boundaries/j_5p_del.csv +9 -0
  46. test/new-results/annotate-new-simu-annotation-performance/sw/boundaries/jf_insertion.csv +4 -0
  47. test/new-results/annotate-new-simu-annotation-performance/sw/boundaries/shm_indel_length.csv +8 -0
  48. test/new-results/annotate-new-simu-annotation-performance/sw/boundaries/v_3p_del.csv +4 -0
  49. test/new-results/annotate-new-simu-annotation-performance/sw/boundaries/v_5p_del.csv +4 -0
  50. test/new-results/annotate-new-simu-annotation-performance/sw/boundaries/vd_insertion.csv +6 -0
  51. test/new-results/annotate-new-simu-annotation-performance/sw/gene-call/d_fraction_correct_vs_mute_freq.csv +28 -0
  52. test/new-results/annotate-new-simu-annotation-performance/sw/gene-call/d_gene.csv +5 -0
  53. test/new-results/annotate-new-simu-annotation-performance/sw/gene-call/j_fraction_correct_vs_mute_freq.csv +28 -0
  54. test/new-results/annotate-new-simu-annotation-performance/sw/gene-call/j_gene.csv +5 -0
  55. test/new-results/annotate-new-simu-annotation-performance/sw/gene-call/v_fraction_correct_vs_mute_freq.csv +28 -0
  56. test/new-results/annotate-new-simu-annotation-performance/sw/gene-call/v_gene.csv +5 -0
  57. test/new-results/annotate-new-simu-annotation-performance/sw/mutation/cdr3_hamming_to_true_naive.csv +6 -0
  58. test/new-results/annotate-new-simu-annotation-performance/sw/mutation/cdr3_muted_bases.csv +7 -0
  59. test/new-results/annotate-new-simu-annotation-performance/sw/mutation/d_hamming_to_true_naive.csv +5 -0
  60. test/new-results/annotate-new-simu-annotation-performance/sw/mutation/d_muted_bases.csv +5 -0
  61. test/new-results/annotate-new-simu-annotation-performance/sw/mutation/hamming_to_true_naive.csv +6 -0
  62. test/new-results/annotate-new-simu-annotation-performance/sw/mutation/j_hamming_to_true_naive.csv +4 -0
  63. test/new-results/annotate-new-simu-annotation-performance/sw/mutation/j_muted_bases.csv +6 -0
  64. test/new-results/annotate-new-simu-annotation-performance/sw/mutation/mute_freqs.csv +28 -0
  65. test/new-results/annotate-new-simu-annotation-performance/sw/mutation/muted_bases.csv +7 -0
  66. test/new-results/annotate-new-simu-annotation-performance/sw/mutation/v_hamming_to_true_naive.csv +4 -0
  67. test/new-results/annotate-new-simu-annotation-performance/sw/mutation/v_muted_bases.csv +4 -0
  68. test/new-results/annotate-new-simu.yaml +1 -0
  69. test/new-results/cache-new-partition.csv +59 -0
  70. test/new-results/get-selection-metrics-new-simu.yaml +1 -0
  71. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/boundaries/d_3p_del.csv +7 -0
  72. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/boundaries/d_5p_del.csv +6 -0
  73. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/boundaries/dj_insertion.csv +8 -0
  74. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/boundaries/fv_insertion.csv +10 -0
  75. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/boundaries/j_3p_del.csv +4 -0
  76. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/boundaries/j_5p_del.csv +8 -0
  77. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/boundaries/jf_insertion.csv +4 -0
  78. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/boundaries/shm_indel_length.csv +8 -0
  79. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/boundaries/v_3p_del.csv +4 -0
  80. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/boundaries/v_5p_del.csv +4 -0
  81. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/boundaries/vd_insertion.csv +6 -0
  82. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/gene-call/d_allele_fraction_correct_vs_per_gene_support.csv +28 -0
  83. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/gene-call/d_fraction_correct_vs_mute_freq.csv +28 -0
  84. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/gene-call/d_gene.csv +5 -0
  85. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/gene-call/j_allele_fraction_correct_vs_per_gene_support.csv +28 -0
  86. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/gene-call/j_fraction_correct_vs_mute_freq.csv +28 -0
  87. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/gene-call/j_gene.csv +5 -0
  88. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/gene-call/v_allele_fraction_correct_vs_per_gene_support.csv +28 -0
  89. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/gene-call/v_fraction_correct_vs_mute_freq.csv +28 -0
  90. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/gene-call/v_gene.csv +5 -0
  91. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/mutation/cdr3_hamming_to_true_naive.csv +5 -0
  92. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/mutation/cdr3_muted_bases.csv +5 -0
  93. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/mutation/d_hamming_to_true_naive.csv +4 -0
  94. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/mutation/d_muted_bases.csv +4 -0
  95. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/mutation/hamming_to_true_naive.csv +5 -0
  96. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/mutation/j_hamming_to_true_naive.csv +4 -0
  97. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/mutation/j_muted_bases.csv +5 -0
  98. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/mutation/mute_freqs.csv +28 -0
  99. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/mutation/muted_bases.csv +5 -0
  100. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/mutation/v_hamming_to_true_naive.csv +4 -0
  101. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/mutation/v_muted_bases.csv +4 -0
  102. test/new-results/multi-annotate-new-simu-annotation-performance/sw/boundaries/d_3p_del.csv +8 -0
  103. test/new-results/multi-annotate-new-simu-annotation-performance/sw/boundaries/d_5p_del.csv +6 -0
  104. test/new-results/multi-annotate-new-simu-annotation-performance/sw/boundaries/dj_insertion.csv +7 -0
  105. test/new-results/multi-annotate-new-simu-annotation-performance/sw/boundaries/fv_insertion.csv +4 -0
  106. test/new-results/multi-annotate-new-simu-annotation-performance/sw/boundaries/j_3p_del.csv +4 -0
  107. test/new-results/multi-annotate-new-simu-annotation-performance/sw/boundaries/j_5p_del.csv +9 -0
  108. test/new-results/multi-annotate-new-simu-annotation-performance/sw/boundaries/jf_insertion.csv +4 -0
  109. test/new-results/multi-annotate-new-simu-annotation-performance/sw/boundaries/shm_indel_length.csv +8 -0
  110. test/new-results/multi-annotate-new-simu-annotation-performance/sw/boundaries/v_3p_del.csv +4 -0
  111. test/new-results/multi-annotate-new-simu-annotation-performance/sw/boundaries/v_5p_del.csv +4 -0
  112. test/new-results/multi-annotate-new-simu-annotation-performance/sw/boundaries/vd_insertion.csv +6 -0
  113. test/new-results/multi-annotate-new-simu-annotation-performance/sw/gene-call/d_fraction_correct_vs_mute_freq.csv +28 -0
  114. test/new-results/multi-annotate-new-simu-annotation-performance/sw/gene-call/d_gene.csv +5 -0
  115. test/new-results/multi-annotate-new-simu-annotation-performance/sw/gene-call/j_fraction_correct_vs_mute_freq.csv +28 -0
  116. test/new-results/multi-annotate-new-simu-annotation-performance/sw/gene-call/j_gene.csv +5 -0
  117. test/new-results/multi-annotate-new-simu-annotation-performance/sw/gene-call/v_fraction_correct_vs_mute_freq.csv +28 -0
  118. test/new-results/multi-annotate-new-simu-annotation-performance/sw/gene-call/v_gene.csv +5 -0
  119. test/new-results/multi-annotate-new-simu-annotation-performance/sw/mutation/cdr3_hamming_to_true_naive.csv +6 -0
  120. test/new-results/multi-annotate-new-simu-annotation-performance/sw/mutation/cdr3_muted_bases.csv +7 -0
  121. test/new-results/multi-annotate-new-simu-annotation-performance/sw/mutation/d_hamming_to_true_naive.csv +5 -0
  122. test/new-results/multi-annotate-new-simu-annotation-performance/sw/mutation/d_muted_bases.csv +5 -0
  123. test/new-results/multi-annotate-new-simu-annotation-performance/sw/mutation/hamming_to_true_naive.csv +6 -0
  124. test/new-results/multi-annotate-new-simu-annotation-performance/sw/mutation/j_hamming_to_true_naive.csv +4 -0
  125. test/new-results/multi-annotate-new-simu-annotation-performance/sw/mutation/j_muted_bases.csv +6 -0
  126. test/new-results/multi-annotate-new-simu-annotation-performance/sw/mutation/mute_freqs.csv +28 -0
  127. test/new-results/multi-annotate-new-simu-annotation-performance/sw/mutation/muted_bases.csv +7 -0
  128. test/new-results/multi-annotate-new-simu-annotation-performance/sw/mutation/v_hamming_to_true_naive.csv +4 -0
  129. test/new-results/multi-annotate-new-simu-annotation-performance/sw/mutation/v_muted_bases.csv +4 -0
  130. test/new-results/multi-annotate-new-simu.yaml +1 -0
  131. test/new-results/partition-new-simu/fasttree/iclust-0/fasttree.out +1 -0
  132. test/new-results/partition-new-simu/fasttree/iclust-0/input-seqs.fa +24 -0
  133. test/new-results/partition-new-simu/fasttree/iclust-0/log +23 -0
  134. test/new-results/partition-new-simu/fasttree/iclust-1/fasttree.out +1 -0
  135. test/new-results/partition-new-simu/fasttree/iclust-1/input-seqs.fa +16 -0
  136. test/new-results/partition-new-simu/fasttree/iclust-1/log +23 -0
  137. test/new-results/partition-new-simu/fasttree/iclust-2/fasttree.out +1 -0
  138. test/new-results/partition-new-simu/fasttree/iclust-2/input-seqs.fa +16 -0
  139. test/new-results/partition-new-simu/fasttree/iclust-2/log +22 -0
  140. test/new-results/partition-new-simu-annotation-performance/hmm/boundaries/d_3p_del.csv +7 -0
  141. test/new-results/partition-new-simu-annotation-performance/hmm/boundaries/d_5p_del.csv +6 -0
  142. test/new-results/partition-new-simu-annotation-performance/hmm/boundaries/dj_insertion.csv +8 -0
  143. test/new-results/partition-new-simu-annotation-performance/hmm/boundaries/fv_insertion.csv +10 -0
  144. test/new-results/partition-new-simu-annotation-performance/hmm/boundaries/j_3p_del.csv +4 -0
  145. test/new-results/partition-new-simu-annotation-performance/hmm/boundaries/j_5p_del.csv +8 -0
  146. test/new-results/partition-new-simu-annotation-performance/hmm/boundaries/jf_insertion.csv +4 -0
  147. test/new-results/partition-new-simu-annotation-performance/hmm/boundaries/shm_indel_length.csv +8 -0
  148. test/new-results/partition-new-simu-annotation-performance/hmm/boundaries/v_3p_del.csv +4 -0
  149. test/new-results/partition-new-simu-annotation-performance/hmm/boundaries/v_5p_del.csv +4 -0
  150. test/new-results/partition-new-simu-annotation-performance/hmm/boundaries/vd_insertion.csv +6 -0
  151. test/new-results/partition-new-simu-annotation-performance/hmm/gene-call/d_allele_fraction_correct_vs_per_gene_support.csv +28 -0
  152. test/new-results/partition-new-simu-annotation-performance/hmm/gene-call/d_fraction_correct_vs_mute_freq.csv +28 -0
  153. test/new-results/partition-new-simu-annotation-performance/hmm/gene-call/d_gene.csv +5 -0
  154. test/new-results/partition-new-simu-annotation-performance/hmm/gene-call/j_allele_fraction_correct_vs_per_gene_support.csv +28 -0
  155. test/new-results/partition-new-simu-annotation-performance/hmm/gene-call/j_fraction_correct_vs_mute_freq.csv +28 -0
  156. test/new-results/partition-new-simu-annotation-performance/hmm/gene-call/j_gene.csv +5 -0
  157. test/new-results/partition-new-simu-annotation-performance/hmm/gene-call/v_allele_fraction_correct_vs_per_gene_support.csv +28 -0
  158. test/new-results/partition-new-simu-annotation-performance/hmm/gene-call/v_fraction_correct_vs_mute_freq.csv +28 -0
  159. test/new-results/partition-new-simu-annotation-performance/hmm/gene-call/v_gene.csv +5 -0
  160. test/new-results/partition-new-simu-annotation-performance/hmm/mutation/cdr3_hamming_to_true_naive.csv +5 -0
  161. test/new-results/partition-new-simu-annotation-performance/hmm/mutation/cdr3_muted_bases.csv +5 -0
  162. test/new-results/partition-new-simu-annotation-performance/hmm/mutation/d_hamming_to_true_naive.csv +4 -0
  163. test/new-results/partition-new-simu-annotation-performance/hmm/mutation/d_muted_bases.csv +4 -0
  164. test/new-results/partition-new-simu-annotation-performance/hmm/mutation/hamming_to_true_naive.csv +5 -0
  165. test/new-results/partition-new-simu-annotation-performance/hmm/mutation/j_hamming_to_true_naive.csv +4 -0
  166. test/new-results/partition-new-simu-annotation-performance/hmm/mutation/j_muted_bases.csv +5 -0
  167. test/new-results/partition-new-simu-annotation-performance/hmm/mutation/mute_freqs.csv +28 -0
  168. test/new-results/partition-new-simu-annotation-performance/hmm/mutation/muted_bases.csv +5 -0
  169. test/new-results/partition-new-simu-annotation-performance/hmm/mutation/v_hamming_to_true_naive.csv +4 -0
  170. test/new-results/partition-new-simu-annotation-performance/hmm/mutation/v_muted_bases.csv +4 -0
  171. test/new-results/partition-new-simu-annotation-performance/sw/boundaries/d_3p_del.csv +8 -0
  172. test/new-results/partition-new-simu-annotation-performance/sw/boundaries/d_5p_del.csv +6 -0
  173. test/new-results/partition-new-simu-annotation-performance/sw/boundaries/dj_insertion.csv +7 -0
  174. test/new-results/partition-new-simu-annotation-performance/sw/boundaries/fv_insertion.csv +4 -0
  175. test/new-results/partition-new-simu-annotation-performance/sw/boundaries/j_3p_del.csv +4 -0
  176. test/new-results/partition-new-simu-annotation-performance/sw/boundaries/j_5p_del.csv +9 -0
  177. test/new-results/partition-new-simu-annotation-performance/sw/boundaries/jf_insertion.csv +4 -0
  178. test/new-results/partition-new-simu-annotation-performance/sw/boundaries/shm_indel_length.csv +8 -0
  179. test/new-results/partition-new-simu-annotation-performance/sw/boundaries/v_3p_del.csv +4 -0
  180. test/new-results/partition-new-simu-annotation-performance/sw/boundaries/v_5p_del.csv +4 -0
  181. test/new-results/partition-new-simu-annotation-performance/sw/boundaries/vd_insertion.csv +6 -0
  182. test/new-results/partition-new-simu-annotation-performance/sw/gene-call/d_fraction_correct_vs_mute_freq.csv +28 -0
  183. test/new-results/partition-new-simu-annotation-performance/sw/gene-call/d_gene.csv +5 -0
  184. test/new-results/partition-new-simu-annotation-performance/sw/gene-call/j_fraction_correct_vs_mute_freq.csv +28 -0
  185. test/new-results/partition-new-simu-annotation-performance/sw/gene-call/j_gene.csv +5 -0
  186. test/new-results/partition-new-simu-annotation-performance/sw/gene-call/v_fraction_correct_vs_mute_freq.csv +28 -0
  187. test/new-results/partition-new-simu-annotation-performance/sw/gene-call/v_gene.csv +5 -0
  188. test/new-results/partition-new-simu-annotation-performance/sw/mutation/cdr3_hamming_to_true_naive.csv +6 -0
  189. test/new-results/partition-new-simu-annotation-performance/sw/mutation/cdr3_muted_bases.csv +7 -0
  190. test/new-results/partition-new-simu-annotation-performance/sw/mutation/d_hamming_to_true_naive.csv +5 -0
  191. test/new-results/partition-new-simu-annotation-performance/sw/mutation/d_muted_bases.csv +5 -0
  192. test/new-results/partition-new-simu-annotation-performance/sw/mutation/hamming_to_true_naive.csv +6 -0
  193. test/new-results/partition-new-simu-annotation-performance/sw/mutation/j_hamming_to_true_naive.csv +4 -0
  194. test/new-results/partition-new-simu-annotation-performance/sw/mutation/j_muted_bases.csv +6 -0
  195. test/new-results/partition-new-simu-annotation-performance/sw/mutation/mute_freqs.csv +28 -0
  196. test/new-results/partition-new-simu-annotation-performance/sw/mutation/muted_bases.csv +7 -0
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  634. test/paired/new-results/test/simu/igh+igk/igk.yaml +1 -0
  635. test/paired/new-results/test/simu/igh+igl/igh.yaml +1 -0
  636. test/paired/new-results/test/simu/igh+igl/igl.yaml +1 -0
  637. test/paired/new-results/test/simu/igh.yaml +1 -0
  638. test/paired/new-results/test/simu/igk.yaml +1 -0
  639. test/paired/new-results/test/simu/igl.yaml +1 -0
  640. test/paired/new-results/test/simu/meta.yaml +1 -0
  641. test/paired/new-results/test.log +215 -33
  642. test/test.py +6 -0
  643. test/trees.nwk +100 -0
  644. {partis_bcr-1.0.11.post1.dev1.data → partis_bcr-1.0.11.post1.dev7.data}/scripts/cf-alleles.py +0 -0
  645. {partis_bcr-1.0.11.post1.dev1.data → partis_bcr-1.0.11.post1.dev7.data}/scripts/cf-germlines.py +0 -0
  646. {partis_bcr-1.0.11.post1.dev1.data → partis_bcr-1.0.11.post1.dev7.data}/scripts/compare-plotdirs.py +0 -0
  647. {partis_bcr-1.0.11.post1.dev1.data → partis_bcr-1.0.11.post1.dev7.data}/scripts/extract-pairing-info.py +0 -0
  648. {partis_bcr-1.0.11.post1.dev1.data → partis_bcr-1.0.11.post1.dev7.data}/scripts/gctree-run.py +0 -0
  649. {partis_bcr-1.0.11.post1.dev1.data → partis_bcr-1.0.11.post1.dev7.data}/scripts/get-naive-probabilities.py +0 -0
  650. {partis_bcr-1.0.11.post1.dev1.data → partis_bcr-1.0.11.post1.dev7.data}/scripts/parse-output.py +0 -0
  651. {partis_bcr-1.0.11.post1.dev1.data → partis_bcr-1.0.11.post1.dev7.data}/scripts/split-loci.py +0 -0
  652. {partis_bcr-1.0.11.post1.dev1.dist-info → partis_bcr-1.0.11.post1.dev7.dist-info}/WHEEL +0 -0
  653. {partis_bcr-1.0.11.post1.dev1.dist-info → partis_bcr-1.0.11.post1.dev7.dist-info}/entry_points.txt +0 -0
  654. {partis_bcr-1.0.11.post1.dev1.dist-info → partis_bcr-1.0.11.post1.dev7.dist-info}/licenses/COPYING +0 -0
  655. {partis_bcr-1.0.11.post1.dev1.dist-info → partis_bcr-1.0.11.post1.dev7.dist-info}/top_level.txt +0 -0
test/new-results/test/parameters/data/sw/hmms/IGHV5-51_star_01.yaml ADDED
@@ -0,0 +1,4484 @@
1
+ !!python/object:python.hmmwriter.HMM
2
+ extras:
3
+ gene_prob: 0.06521739130434782
4
+ overall_mute_freq: 0.08956521739130437
5
+ per_gene_mute_freq: 0.11079193005792654
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+ name: IGHV5-51_star_01
7
+ states:
8
+ - !!python/object:python.hmmwriter.State
9
+ emissions: null
10
+ extras: {}
11
+ name: init
12
+ transitions:
13
+ IGHV5-51_star_01_0: 0.6666666666666666
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+ insert_left_N: 0.33333333333333337
15
+ - !!python/object:python.hmmwriter.State
16
+ emissions:
17
+ probs:
18
+ A: 0.25
19
+ C: 0.25
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+ G: 0.25
21
+ T: 0.25
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+ track: nukes
23
+ extras:
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+ ambiguous_char: N
25
+ ambiguous_emission_prob: 0.25
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+ germline: N
27
+ name: insert_left_N
28
+ transitions:
29
+ IGHV5-51_star_01_0: 0.6666666666666666
30
+ insert_left_N: 0.33333333333333337
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+ - !!python/object:python.hmmwriter.State
32
+ emissions:
33
+ probs:
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+ A: 0.03587185532259167
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+ C: 0.03587185532259167
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+ G: 0.892384434032225
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+ T: 0.03587185532259167
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+ track: nukes
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+ extras:
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+ ambiguous_char: N
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+ ambiguous_emission_prob: 0.25
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+ germline: G
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+ name: IGHV5-51_star_01_0
44
+ transitions:
45
+ IGHV5-51_star_01_1: 1.0
46
+ - !!python/object:python.hmmwriter.State
47
+ emissions:
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+ probs:
49
+ A: 0.892384434032225
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+ C: 0.03587185532259167
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+ G: 0.03587185532259167
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+ T: 0.03587185532259167
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+ track: nukes
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+ extras:
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+ ambiguous_char: N
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+ ambiguous_emission_prob: 0.25
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+ germline: A
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+ name: IGHV5-51_star_01_1
59
+ transitions:
60
+ IGHV5-51_star_01_2: 1.0
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+ - !!python/object:python.hmmwriter.State
62
+ emissions:
63
+ probs:
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+ A: 0.03587185532259167
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+ C: 0.03587185532259167
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+ G: 0.892384434032225
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+ T: 0.03587185532259167
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+ track: nukes
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+ extras:
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+ ambiguous_char: N
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+ ambiguous_emission_prob: 0.25
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+ germline: G
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+ name: IGHV5-51_star_01_2
74
+ transitions:
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+ IGHV5-51_star_01_3: 1.0
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+ - !!python/object:python.hmmwriter.State
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+ emissions:
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+ probs:
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+ A: 0.03587185532259167
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+ C: 0.03587185532259167
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+ T: 0.03587185532259167
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+ track: nukes
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+ extras:
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+ ambiguous_char: N
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+ ambiguous_emission_prob: 0.25
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+ germline: G
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+ name: IGHV5-51_star_01_3
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+ transitions:
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+ IGHV5-51_star_01_4: 1.0
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+ - !!python/object:python.hmmwriter.State
92
+ emissions:
93
+ probs:
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+ A: 0.03587185532259167
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+ C: 0.03587185532259167
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+ G: 0.03587185532259167
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+ T: 0.892384434032225
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+ track: nukes
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+ extras:
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+ ambiguous_char: N
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+ ambiguous_emission_prob: 0.25
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+ germline: T
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+ name: IGHV5-51_star_01_4
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+ transitions:
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+ IGHV5-51_star_01_5: 1.0
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+ - !!python/object:python.hmmwriter.State
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+ emissions:
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+ probs:
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+ A: 0.03587185532259167
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+ C: 0.03587185532259167
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+ G: 0.892384434032225
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+ T: 0.03587185532259167
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+ track: nukes
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+ extras:
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+ ambiguous_char: N
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+ ambiguous_emission_prob: 0.25
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+ germline: G
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+ name: IGHV5-51_star_01_5
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+ transitions:
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+ IGHV5-51_star_01_6: 1.0
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+ - !!python/object:python.hmmwriter.State
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+ emissions:
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+ T: 0.03587185532259167
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+ track: nukes
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+ extras:
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+ ambiguous_char: N
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+ ambiguous_emission_prob: 0.25
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+ germline: C
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+ name: IGHV5-51_star_01_6
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+ transitions:
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+ IGHV5-51_star_01_7: 1.0
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+ - !!python/object:python.hmmwriter.State
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+ emissions:
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+ C: 0.03587185532259167
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+ G: 0.03587185532259167
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+ T: 0.03587185532259167
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+ track: nukes
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+ extras:
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+ ambiguous_char: N
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+ ambiguous_emission_prob: 0.25
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+ germline: A
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+ name: IGHV5-51_star_01_7
149
+ transitions:
150
+ IGHV5-51_star_01_8: 1.0
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+ - !!python/object:python.hmmwriter.State
152
+ emissions:
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+ probs:
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+ A: 0.03587185532259167
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+ C: 0.03587185532259167
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+ G: 0.892384434032225
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+ T: 0.03587185532259167
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+ track: nukes
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+ extras:
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+ ambiguous_char: N
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+ ambiguous_emission_prob: 0.25
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+ germline: G
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+ name: IGHV5-51_star_01_8
164
+ transitions:
165
+ IGHV5-51_star_01_9: 1.0
166
+ - !!python/object:python.hmmwriter.State
167
+ emissions:
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+ probs:
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+ A: 0.03587185532259167
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+ C: 0.892384434032225
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+ T: 0.03587185532259167
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+ track: nukes
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+ extras:
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+ ambiguous_char: N
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+ ambiguous_emission_prob: 0.25
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+ germline: C
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+ name: IGHV5-51_star_01_9
179
+ transitions:
180
+ IGHV5-51_star_01_10: 1.0
181
+ - !!python/object:python.hmmwriter.State
182
+ emissions:
183
+ probs:
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+ A: 0.03587185532259167
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+ C: 0.03587185532259167
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+ G: 0.03587185532259167
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+ T: 0.892384434032225
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+ track: nukes
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+ extras:
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+ ambiguous_char: N
191
+ ambiguous_emission_prob: 0.25
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+ germline: T
193
+ name: IGHV5-51_star_01_10
194
+ transitions:
195
+ IGHV5-51_star_01_11: 1.0
196
+ - !!python/object:python.hmmwriter.State
197
+ emissions:
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+ probs:
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+ A: 0.03587185532259167
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+ C: 0.03587185532259167
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+ G: 0.892384434032225
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+ T: 0.03587185532259167
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+ track: nukes
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+ extras:
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+ ambiguous_char: N
206
+ ambiguous_emission_prob: 0.25
207
+ germline: G
208
+ name: IGHV5-51_star_01_11
209
+ transitions:
210
+ IGHV5-51_star_01_12: 1.0
211
+ - !!python/object:python.hmmwriter.State
212
+ emissions:
213
+ probs:
214
+ A: 0.03587185532259167
215
+ C: 0.03587185532259167
216
+ G: 0.892384434032225
217
+ T: 0.03587185532259167
218
+ track: nukes
219
+ extras:
220
+ ambiguous_char: N
221
+ ambiguous_emission_prob: 0.25
222
+ germline: G
223
+ name: IGHV5-51_star_01_12
224
+ transitions:
225
+ IGHV5-51_star_01_13: 1.0
226
+ - !!python/object:python.hmmwriter.State
227
+ emissions:
228
+ probs:
229
+ A: 0.03587185532259167
230
+ C: 0.03587185532259167
231
+ G: 0.03587185532259167
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+ T: 0.892384434032225
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+ track: nukes
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+ extras:
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+ ambiguous_char: N
236
+ ambiguous_emission_prob: 0.25
237
+ germline: T
238
+ name: IGHV5-51_star_01_13
239
+ transitions:
240
+ IGHV5-51_star_01_14: 1.0
241
+ - !!python/object:python.hmmwriter.State
242
+ emissions:
243
+ probs:
244
+ A: 0.03587185532259167
245
+ C: 0.03587185532259167
246
+ G: 0.892384434032225
247
+ T: 0.03587185532259167
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+ track: nukes
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+ extras:
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+ ambiguous_char: N
251
+ ambiguous_emission_prob: 0.25
252
+ germline: G
253
+ name: IGHV5-51_star_01_14
254
+ transitions:
255
+ IGHV5-51_star_01_15: 1.0
256
+ - !!python/object:python.hmmwriter.State
257
+ emissions:
258
+ probs:
259
+ A: 0.03587185532259167
260
+ C: 0.892384434032225
261
+ G: 0.03587185532259167
262
+ T: 0.03587185532259167
263
+ track: nukes
264
+ extras:
265
+ ambiguous_char: N
266
+ ambiguous_emission_prob: 0.25
267
+ germline: C
268
+ name: IGHV5-51_star_01_15
269
+ transitions:
270
+ IGHV5-51_star_01_16: 1.0
271
+ - !!python/object:python.hmmwriter.State
272
+ emissions:
273
+ probs:
274
+ A: 0.892384434032225
275
+ C: 0.03587185532259167
276
+ G: 0.03587185532259167
277
+ T: 0.03587185532259167
278
+ track: nukes
279
+ extras:
280
+ ambiguous_char: N
281
+ ambiguous_emission_prob: 0.25
282
+ germline: A
283
+ name: IGHV5-51_star_01_16
284
+ transitions:
285
+ IGHV5-51_star_01_17: 1.0
286
+ - !!python/object:python.hmmwriter.State
287
+ emissions:
288
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290
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293
+ track: nukes
294
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+ ambiguous_char: N
296
+ ambiguous_emission_prob: 0.25
297
+ germline: G
298
+ name: IGHV5-51_star_01_17
299
+ transitions:
300
+ IGHV5-51_star_01_18: 1.0
301
+ - !!python/object:python.hmmwriter.State
302
+ emissions:
303
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304
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305
+ C: 0.03587185532259167
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+ track: nukes
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+ extras:
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+ ambiguous_char: N
311
+ ambiguous_emission_prob: 0.25
312
+ germline: T
313
+ name: IGHV5-51_star_01_18
314
+ transitions:
315
+ IGHV5-51_star_01_19: 1.0
316
+ - !!python/object:python.hmmwriter.State
317
+ emissions:
318
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+ track: nukes
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326
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328
+ name: IGHV5-51_star_01_19
329
+ transitions:
330
+ IGHV5-51_star_01_20: 1.0
331
+ - !!python/object:python.hmmwriter.State
332
+ emissions:
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335
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341
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343
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344
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345
+ IGHV5-51_star_01_21: 1.0
346
+ - !!python/object:python.hmmwriter.State
347
+ emissions:
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356
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358
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359
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360
+ IGHV5-51_star_01_22: 1.0
361
+ - !!python/object:python.hmmwriter.State
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+ emissions:
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+ transitions:
375
+ IGHV5-51_star_01_23: 1.0
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+ - !!python/object:python.hmmwriter.State
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+ emissions:
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389
+ transitions:
390
+ IGHV5-51_star_01_24: 1.0
391
+ - !!python/object:python.hmmwriter.State
392
+ emissions:
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+ - !!python/object:python.hmmwriter.State
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419
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420
+ IGHV5-51_star_01_26: 1.0
421
+ - !!python/object:python.hmmwriter.State
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+ emissions:
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434
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+ IGHV5-51_star_01_27: 1.0
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+ - !!python/object:python.hmmwriter.State
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+ emissions:
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449
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450
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451
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452
+ emissions:
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464
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466
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479
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481
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494
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496
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509
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511
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521
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522
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523
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524
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525
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526
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527
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528
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529
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530
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531
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532
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533
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534
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535
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536
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537
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538
+ name: IGHV5-51_star_01_33
539
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540
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541
+ - !!python/object:python.hmmwriter.State
542
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543
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544
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545
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546
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547
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548
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549
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550
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551
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552
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553
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554
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555
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556
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557
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558
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559
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560
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561
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562
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563
+ track: nukes
564
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565
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566
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567
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568
+ name: IGHV5-51_star_01_35
569
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570
+ IGHV5-51_star_01_36: 1.0
571
+ - !!python/object:python.hmmwriter.State
572
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573
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574
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575
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576
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577
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578
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579
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580
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581
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582
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583
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584
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585
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586
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587
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588
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589
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590
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591
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592
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593
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594
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595
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596
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597
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598
+ name: IGHV5-51_star_01_37
599
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600
+ IGHV5-51_star_01_38: 1.0
601
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602
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603
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604
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605
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606
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607
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608
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609
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610
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611
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612
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613
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614
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615
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616
+ - !!python/object:python.hmmwriter.State
617
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618
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619
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620
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621
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622
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623
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624
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625
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626
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627
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628
+ name: IGHV5-51_star_01_39
629
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630
+ IGHV5-51_star_01_40: 1.0
631
+ - !!python/object:python.hmmwriter.State
632
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633
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634
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635
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636
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637
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638
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639
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640
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641
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642
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643
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644
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645
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646
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647
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648
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649
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650
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651
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652
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653
+ track: nukes
654
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655
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656
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657
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658
+ name: IGHV5-51_star_01_41
659
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660
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661
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662
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663
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664
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665
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666
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667
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668
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669
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670
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671
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672
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673
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674
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675
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676
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677
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678
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679
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680
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681
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682
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683
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684
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685
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686
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687
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688
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689
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690
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691
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692
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693
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694
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695
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696
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697
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698
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699
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700
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701
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702
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703
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704
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705
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706
+ - !!python/object:python.hmmwriter.State
707
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708
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709
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710
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711
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712
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713
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714
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715
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716
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717
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718
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719
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720
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721
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722
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723
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724
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725
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726
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727
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728
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729
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730
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731
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732
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733
+ name: IGHV5-51_star_01_46
734
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735
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736
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737
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738
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739
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740
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741
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742
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743
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744
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745
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746
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747
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748
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749
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750
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751
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752
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753
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754
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755
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756
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757
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758
+ track: nukes
759
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760
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761
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762
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763
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764
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765
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766
+ - !!python/object:python.hmmwriter.State
767
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768
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769
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770
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771
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772
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773
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774
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775
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776
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777
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778
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779
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780
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781
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782
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783
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784
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785
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786
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787
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788
+ track: nukes
789
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790
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791
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792
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793
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794
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795
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796
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797
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798
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799
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800
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801
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802
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803
+ track: nukes
804
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805
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806
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807
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808
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809
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810
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811
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812
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813
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814
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815
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816
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817
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818
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819
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820
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821
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822
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823
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824
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825
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826
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827
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828
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829
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830
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831
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832
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833
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834
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835
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836
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837
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838
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839
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840
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841
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842
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843
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844
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845
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846
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847
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848
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849
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850
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851
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852
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853
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854
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855
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856
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857
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858
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859
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860
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861
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862
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863
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864
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865
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866
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867
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868
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869
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870
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871
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872
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873
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874
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875
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876
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877
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878
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879
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880
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881
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882
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883
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884
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885
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886
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887
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888
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889
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890
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891
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892
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893
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894
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895
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896
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897
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898
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899
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900
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901
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902
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903
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904
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905
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906
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907
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908
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909
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910
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911
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912
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913
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914
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915
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916
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917
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918
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919
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920
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921
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922
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923
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924
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925
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926
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927
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928
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929
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930
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931
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932
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933
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934
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935
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936
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937
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938
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939
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940
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941
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942
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943
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944
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945
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946
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947
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948
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949
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950
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951
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952
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953
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954
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955
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956
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957
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958
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959
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960
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961
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962
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963
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964
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965
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966
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967
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968
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969
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970
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971
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972
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973
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974
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975
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976
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977
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978
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979
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980
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981
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982
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983
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984
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985
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986
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987
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988
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989
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990
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991
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992
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993
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994
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995
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996
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997
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998
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999
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1000
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1001
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1002
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1003
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1004
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1005
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1006
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1007
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1008
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1009
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1010
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1011
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1012
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1013
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1014
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1015
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1016
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1017
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1018
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1019
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1020
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1021
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1022
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1023
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1024
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1025
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1026
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1027
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1028
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1029
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1030
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1031
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1032
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1033
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1034
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1035
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1036
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1037
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1038
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1039
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1040
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1041
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1042
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1043
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1044
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1045
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1046
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1047
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1048
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1049
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1050
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1051
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1052
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1053
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1054
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1055
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1056
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1057
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1058
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1059
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1060
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1061
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1062
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1063
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1064
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1065
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1066
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1067
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1068
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1069
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1070
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1071
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1072
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1073
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1074
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1075
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1076
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1077
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1078
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1079
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1080
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1081
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1082
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1083
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1084
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1085
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1086
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1087
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1088
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1089
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1090
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1091
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1092
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1093
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1094
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1095
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1096
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1097
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1098
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1099
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1100
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1101
+ G: 0.03587185532259167
1102
+ T: 0.892384434032225
1103
+ track: nukes
1104
+ extras:
1105
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1106
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1107
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1108
+ name: IGHV5-51_star_01_71
1109
+ transitions:
1110
+ IGHV5-51_star_01_72: 1.0
1111
+ - !!python/object:python.hmmwriter.State
1112
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1113
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1114
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1115
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1116
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1117
+ T: 0.892384434032225
1118
+ track: nukes
1119
+ extras:
1120
+ ambiguous_char: N
1121
+ ambiguous_emission_prob: 0.25
1122
+ germline: T
1123
+ name: IGHV5-51_star_01_72
1124
+ transitions:
1125
+ IGHV5-51_star_01_73: 1.0
1126
+ - !!python/object:python.hmmwriter.State
1127
+ emissions:
1128
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1129
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1130
+ C: 0.892384434032225
1131
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1132
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1133
+ track: nukes
1134
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1135
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1136
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1137
+ germline: C
1138
+ name: IGHV5-51_star_01_73
1139
+ transitions:
1140
+ IGHV5-51_star_01_74: 1.0
1141
+ - !!python/object:python.hmmwriter.State
1142
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1143
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1144
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1145
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1146
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1147
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1148
+ track: nukes
1149
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1150
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1151
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1152
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1153
+ name: IGHV5-51_star_01_74
1154
+ transitions:
1155
+ IGHV5-51_star_01_75: 1.0
1156
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1157
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1158
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1159
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1160
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1161
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1162
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1163
+ track: nukes
1164
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1165
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1166
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1167
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1168
+ name: IGHV5-51_star_01_75
1169
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1170
+ IGHV5-51_star_01_76: 1.0
1171
+ - !!python/object:python.hmmwriter.State
1172
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1173
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1174
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1175
+ C: 0.03587185532259167
1176
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1177
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1178
+ track: nukes
1179
+ extras:
1180
+ ambiguous_char: N
1181
+ ambiguous_emission_prob: 0.25
1182
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1183
+ name: IGHV5-51_star_01_76
1184
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1185
+ IGHV5-51_star_01_77: 1.0
1186
+ - !!python/object:python.hmmwriter.State
1187
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1188
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1189
+ A: 0.892384434032225
1190
+ C: 0.03587185532259167
1191
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1192
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1193
+ track: nukes
1194
+ extras:
1195
+ ambiguous_char: N
1196
+ ambiguous_emission_prob: 0.25
1197
+ germline: A
1198
+ name: IGHV5-51_star_01_77
1199
+ transitions:
1200
+ IGHV5-51_star_01_78: 1.0
1201
+ - !!python/object:python.hmmwriter.State
1202
+ emissions:
1203
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1204
+ A: 0.03587185532259167
1205
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1206
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1207
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1208
+ track: nukes
1209
+ extras:
1210
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1211
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1212
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1213
+ name: IGHV5-51_star_01_78
1214
+ transitions:
1215
+ IGHV5-51_star_01_79: 1.0
1216
+ - !!python/object:python.hmmwriter.State
1217
+ emissions:
1218
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1219
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1220
+ C: 0.03587185532259167
1221
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1222
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1223
+ track: nukes
1224
+ extras:
1225
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1226
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1227
+ germline: A
1228
+ name: IGHV5-51_star_01_79
1229
+ transitions:
1230
+ IGHV5-51_star_01_80: 1.0
1231
+ - !!python/object:python.hmmwriter.State
1232
+ emissions:
1233
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1234
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1235
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1236
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1237
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1238
+ track: nukes
1239
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1240
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1241
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1242
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1243
+ name: IGHV5-51_star_01_80
1244
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1245
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1246
+ - !!python/object:python.hmmwriter.State
1247
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1248
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1249
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1250
+ C: 0.03587185532259167
1251
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1252
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1253
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1254
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1255
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1256
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1257
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1258
+ name: IGHV5-51_star_01_81
1259
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1260
+ IGHV5-51_star_01_82: 1.0
1261
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1262
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1263
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1264
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1265
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1266
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1267
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1268
+ track: nukes
1269
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1270
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1271
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1272
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1273
+ name: IGHV5-51_star_01_82
1274
+ transitions:
1275
+ IGHV5-51_star_01_83: 1.0
1276
+ - !!python/object:python.hmmwriter.State
1277
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1278
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1279
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1280
+ C: 0.892384434032225
1281
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1282
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1283
+ track: nukes
1284
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1285
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1286
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1287
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1288
+ name: IGHV5-51_star_01_83
1289
+ transitions:
1290
+ IGHV5-51_star_01_84: 1.0
1291
+ - !!python/object:python.hmmwriter.State
1292
+ emissions:
1293
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1294
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1295
+ C: 0.03587185532259167
1296
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1297
+ T: 0.892384434032225
1298
+ track: nukes
1299
+ extras:
1300
+ ambiguous_char: N
1301
+ ambiguous_emission_prob: 0.25
1302
+ germline: T
1303
+ name: IGHV5-51_star_01_84
1304
+ transitions:
1305
+ IGHV5-51_star_01_85: 1.0
1306
+ - !!python/object:python.hmmwriter.State
1307
+ emissions:
1308
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1309
+ A: 0.03587185532259167
1310
+ C: 0.03587185532259167
1311
+ G: 0.03587185532259167
1312
+ T: 0.892384434032225
1313
+ track: nukes
1314
+ extras:
1315
+ ambiguous_char: N
1316
+ ambiguous_emission_prob: 0.25
1317
+ germline: T
1318
+ name: IGHV5-51_star_01_85
1319
+ transitions:
1320
+ IGHV5-51_star_01_86: 1.0
1321
+ - !!python/object:python.hmmwriter.State
1322
+ emissions:
1323
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1324
+ A: 0.03587185532259167
1325
+ C: 0.03587185532259167
1326
+ G: 0.03587185532259167
1327
+ T: 0.892384434032225
1328
+ track: nukes
1329
+ extras:
1330
+ ambiguous_char: N
1331
+ ambiguous_emission_prob: 0.25
1332
+ germline: T
1333
+ name: IGHV5-51_star_01_86
1334
+ transitions:
1335
+ IGHV5-51_star_01_87: 1.0
1336
+ - !!python/object:python.hmmwriter.State
1337
+ emissions:
1338
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1339
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1340
+ C: 0.03587185532259167
1341
+ G: 0.03587185532259167
1342
+ T: 0.03587185532259167
1343
+ track: nukes
1344
+ extras:
1345
+ ambiguous_char: N
1346
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1347
+ germline: A
1348
+ name: IGHV5-51_star_01_87
1349
+ transitions:
1350
+ IGHV5-51_star_01_88: 1.0
1351
+ - !!python/object:python.hmmwriter.State
1352
+ emissions:
1353
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1354
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1355
+ C: 0.892384434032225
1356
+ G: 0.03587185532259167
1357
+ T: 0.03587185532259167
1358
+ track: nukes
1359
+ extras:
1360
+ ambiguous_char: N
1361
+ ambiguous_emission_prob: 0.25
1362
+ germline: C
1363
+ name: IGHV5-51_star_01_88
1364
+ transitions:
1365
+ IGHV5-51_star_01_89: 1.0
1366
+ - !!python/object:python.hmmwriter.State
1367
+ emissions:
1368
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1369
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1370
+ C: 0.892384434032225
1371
+ G: 0.03587185532259167
1372
+ T: 0.03587185532259167
1373
+ track: nukes
1374
+ extras:
1375
+ ambiguous_char: N
1376
+ ambiguous_emission_prob: 0.25
1377
+ germline: C
1378
+ name: IGHV5-51_star_01_89
1379
+ transitions:
1380
+ IGHV5-51_star_01_90: 1.0
1381
+ - !!python/object:python.hmmwriter.State
1382
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1383
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1384
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1385
+ C: 0.03587185532259167
1386
+ G: 0.03587185532259167
1387
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1388
+ track: nukes
1389
+ extras:
1390
+ ambiguous_char: N
1391
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1392
+ germline: A
1393
+ name: IGHV5-51_star_01_90
1394
+ transitions:
1395
+ IGHV5-51_star_01_91: 1.0
1396
+ - !!python/object:python.hmmwriter.State
1397
+ emissions:
1398
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1399
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1400
+ C: 0.03587185532259167
1401
+ G: 0.892384434032225
1402
+ T: 0.03587185532259167
1403
+ track: nukes
1404
+ extras:
1405
+ ambiguous_char: N
1406
+ ambiguous_emission_prob: 0.25
1407
+ germline: G
1408
+ name: IGHV5-51_star_01_91
1409
+ transitions:
1410
+ IGHV5-51_star_01_92: 1.0
1411
+ - !!python/object:python.hmmwriter.State
1412
+ emissions:
1413
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1414
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1415
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1416
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1417
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1418
+ track: nukes
1419
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1420
+ ambiguous_char: N
1421
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1422
+ germline: C
1423
+ name: IGHV5-51_star_01_92
1424
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1425
+ IGHV5-51_star_01_93: 1.0
1426
+ - !!python/object:python.hmmwriter.State
1427
+ emissions:
1428
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1429
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1430
+ C: 0.03587185532259167
1431
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1432
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1433
+ track: nukes
1434
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1435
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1436
+ ambiguous_emission_prob: 0.25
1437
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1438
+ name: IGHV5-51_star_01_93
1439
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1440
+ IGHV5-51_star_01_94: 1.0
1441
+ - !!python/object:python.hmmwriter.State
1442
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1443
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1444
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1445
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1446
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1447
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1448
+ track: nukes
1449
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1450
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1451
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1452
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1453
+ name: IGHV5-51_star_01_94
1454
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1455
+ IGHV5-51_star_01_95: 1.0
1456
+ - !!python/object:python.hmmwriter.State
1457
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1458
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1459
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1460
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1461
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1462
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1463
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1464
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1465
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1466
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1467
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1468
+ name: IGHV5-51_star_01_95
1469
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1470
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1471
+ - !!python/object:python.hmmwriter.State
1472
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1473
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1474
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1475
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1476
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1477
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1478
+ track: nukes
1479
+ extras:
1480
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1481
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1482
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1483
+ name: IGHV5-51_star_01_96
1484
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1485
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1486
+ - !!python/object:python.hmmwriter.State
1487
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1488
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1489
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1490
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1491
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1492
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1493
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1494
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1495
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1496
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1497
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1498
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1499
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1500
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1501
+ - !!python/object:python.hmmwriter.State
1502
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1503
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1504
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1505
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1506
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1507
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1508
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1509
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1510
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1511
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1512
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1513
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1514
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1515
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1516
+ - !!python/object:python.hmmwriter.State
1517
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1518
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1519
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1520
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1521
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1522
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1523
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1524
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1525
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1526
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1527
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1528
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1529
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1530
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1531
+ - !!python/object:python.hmmwriter.State
1532
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1533
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1534
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1535
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1536
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1537
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1538
+ track: nukes
1539
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1540
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1541
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1542
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1543
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1544
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1545
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1546
+ - !!python/object:python.hmmwriter.State
1547
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1548
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1549
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1550
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1551
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1552
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1553
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1554
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1555
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1556
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1557
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1558
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1559
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1560
+ IGHV5-51_star_01_102: 1.0
1561
+ - !!python/object:python.hmmwriter.State
1562
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1563
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1564
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1565
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1566
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1567
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1568
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1569
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1570
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1571
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1572
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1573
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1574
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1575
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1576
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1577
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1578
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1579
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1580
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1581
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1582
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1583
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1584
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1585
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1586
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1587
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1588
+ name: IGHV5-51_star_01_103
1589
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1590
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1591
+ - !!python/object:python.hmmwriter.State
1592
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1593
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1594
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1595
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1596
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1597
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1598
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1599
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1600
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1601
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1602
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1603
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1604
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1605
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1606
+ - !!python/object:python.hmmwriter.State
1607
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1608
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1609
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1610
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1611
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1612
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1613
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1614
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1615
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1616
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1617
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1618
+ name: IGHV5-51_star_01_105
1619
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1620
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1621
+ - !!python/object:python.hmmwriter.State
1622
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1623
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1624
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1625
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1626
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1627
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1628
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1629
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1630
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1631
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1632
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1633
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1634
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1635
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1636
+ - !!python/object:python.hmmwriter.State
1637
+ emissions:
1638
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1639
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1640
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1641
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1642
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1643
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1644
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1645
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1646
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1647
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1648
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1649
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1650
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1651
+ - !!python/object:python.hmmwriter.State
1652
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1653
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1654
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1655
+ C: 0.03587185532259167
1656
+ G: 0.892384434032225
1657
+ T: 0.03587185532259167
1658
+ track: nukes
1659
+ extras:
1660
+ ambiguous_char: N
1661
+ ambiguous_emission_prob: 0.25
1662
+ germline: G
1663
+ name: IGHV5-51_star_01_108
1664
+ transitions:
1665
+ IGHV5-51_star_01_109: 1.0
1666
+ - !!python/object:python.hmmwriter.State
1667
+ emissions:
1668
+ probs:
1669
+ A: 0.03587185532259167
1670
+ C: 0.03587185532259167
1671
+ G: 0.03587185532259167
1672
+ T: 0.892384434032225
1673
+ track: nukes
1674
+ extras:
1675
+ ambiguous_char: N
1676
+ ambiguous_emission_prob: 0.25
1677
+ germline: T
1678
+ name: IGHV5-51_star_01_109
1679
+ transitions:
1680
+ IGHV5-51_star_01_110: 1.0
1681
+ - !!python/object:python.hmmwriter.State
1682
+ emissions:
1683
+ probs:
1684
+ A: 0.03587185532259167
1685
+ C: 0.03587185532259167
1686
+ G: 0.892384434032225
1687
+ T: 0.03587185532259167
1688
+ track: nukes
1689
+ extras:
1690
+ ambiguous_char: N
1691
+ ambiguous_emission_prob: 0.25
1692
+ germline: G
1693
+ name: IGHV5-51_star_01_110
1694
+ transitions:
1695
+ IGHV5-51_star_01_111: 1.0
1696
+ - !!python/object:python.hmmwriter.State
1697
+ emissions:
1698
+ probs:
1699
+ A: 0.03587185532259167
1700
+ C: 0.892384434032225
1701
+ G: 0.03587185532259167
1702
+ T: 0.03587185532259167
1703
+ track: nukes
1704
+ extras:
1705
+ ambiguous_char: N
1706
+ ambiguous_emission_prob: 0.25
1707
+ germline: C
1708
+ name: IGHV5-51_star_01_111
1709
+ transitions:
1710
+ IGHV5-51_star_01_112: 1.0
1711
+ - !!python/object:python.hmmwriter.State
1712
+ emissions:
1713
+ probs:
1714
+ A: 0.03587185532259167
1715
+ C: 0.03587185532259167
1716
+ G: 0.892384434032225
1717
+ T: 0.03587185532259167
1718
+ track: nukes
1719
+ extras:
1720
+ ambiguous_char: N
1721
+ ambiguous_emission_prob: 0.25
1722
+ germline: G
1723
+ name: IGHV5-51_star_01_112
1724
+ transitions:
1725
+ IGHV5-51_star_01_113: 1.0
1726
+ - !!python/object:python.hmmwriter.State
1727
+ emissions:
1728
+ probs:
1729
+ A: 0.03587185532259167
1730
+ C: 0.892384434032225
1731
+ G: 0.03587185532259167
1732
+ T: 0.03587185532259167
1733
+ track: nukes
1734
+ extras:
1735
+ ambiguous_char: N
1736
+ ambiguous_emission_prob: 0.25
1737
+ germline: C
1738
+ name: IGHV5-51_star_01_113
1739
+ transitions:
1740
+ IGHV5-51_star_01_114: 1.0
1741
+ - !!python/object:python.hmmwriter.State
1742
+ emissions:
1743
+ probs:
1744
+ A: 0.03587185532259167
1745
+ C: 0.892384434032225
1746
+ G: 0.03587185532259167
1747
+ T: 0.03587185532259167
1748
+ track: nukes
1749
+ extras:
1750
+ ambiguous_char: N
1751
+ ambiguous_emission_prob: 0.25
1752
+ germline: C
1753
+ name: IGHV5-51_star_01_114
1754
+ transitions:
1755
+ IGHV5-51_star_01_115: 1.0
1756
+ - !!python/object:python.hmmwriter.State
1757
+ emissions:
1758
+ probs:
1759
+ A: 0.892384434032225
1760
+ C: 0.03587185532259167
1761
+ G: 0.03587185532259167
1762
+ T: 0.03587185532259167
1763
+ track: nukes
1764
+ extras:
1765
+ ambiguous_char: N
1766
+ ambiguous_emission_prob: 0.25
1767
+ germline: A
1768
+ name: IGHV5-51_star_01_115
1769
+ transitions:
1770
+ IGHV5-51_star_01_116: 1.0
1771
+ - !!python/object:python.hmmwriter.State
1772
+ emissions:
1773
+ probs:
1774
+ A: 0.03587185532259167
1775
+ C: 0.03587185532259167
1776
+ G: 0.892384434032225
1777
+ T: 0.03587185532259167
1778
+ track: nukes
1779
+ extras:
1780
+ ambiguous_char: N
1781
+ ambiguous_emission_prob: 0.25
1782
+ germline: G
1783
+ name: IGHV5-51_star_01_116
1784
+ transitions:
1785
+ IGHV5-51_star_01_117: 1.0
1786
+ - !!python/object:python.hmmwriter.State
1787
+ emissions:
1788
+ probs:
1789
+ A: 0.892384434032225
1790
+ C: 0.03587185532259167
1791
+ G: 0.03587185532259167
1792
+ T: 0.03587185532259167
1793
+ track: nukes
1794
+ extras:
1795
+ ambiguous_char: N
1796
+ ambiguous_emission_prob: 0.25
1797
+ germline: A
1798
+ name: IGHV5-51_star_01_117
1799
+ transitions:
1800
+ IGHV5-51_star_01_118: 1.0
1801
+ - !!python/object:python.hmmwriter.State
1802
+ emissions:
1803
+ probs:
1804
+ A: 0.03587185532259167
1805
+ C: 0.03587185532259167
1806
+ G: 0.03587185532259167
1807
+ T: 0.892384434032225
1808
+ track: nukes
1809
+ extras:
1810
+ ambiguous_char: N
1811
+ ambiguous_emission_prob: 0.25
1812
+ germline: T
1813
+ name: IGHV5-51_star_01_118
1814
+ transitions:
1815
+ IGHV5-51_star_01_119: 1.0
1816
+ - !!python/object:python.hmmwriter.State
1817
+ emissions:
1818
+ probs:
1819
+ A: 0.03587185532259167
1820
+ C: 0.03587185532259167
1821
+ G: 0.892384434032225
1822
+ T: 0.03587185532259167
1823
+ track: nukes
1824
+ extras:
1825
+ ambiguous_char: N
1826
+ ambiguous_emission_prob: 0.25
1827
+ germline: G
1828
+ name: IGHV5-51_star_01_119
1829
+ transitions:
1830
+ IGHV5-51_star_01_120: 1.0
1831
+ - !!python/object:python.hmmwriter.State
1832
+ emissions:
1833
+ probs:
1834
+ A: 0.03587185532259167
1835
+ C: 0.892384434032225
1836
+ G: 0.03587185532259167
1837
+ T: 0.03587185532259167
1838
+ track: nukes
1839
+ extras:
1840
+ ambiguous_char: N
1841
+ ambiguous_emission_prob: 0.25
1842
+ germline: C
1843
+ name: IGHV5-51_star_01_120
1844
+ transitions:
1845
+ IGHV5-51_star_01_121: 1.0
1846
+ - !!python/object:python.hmmwriter.State
1847
+ emissions:
1848
+ probs:
1849
+ A: 0.03587185532259167
1850
+ C: 0.892384434032225
1851
+ G: 0.03587185532259167
1852
+ T: 0.03587185532259167
1853
+ track: nukes
1854
+ extras:
1855
+ ambiguous_char: N
1856
+ ambiguous_emission_prob: 0.25
1857
+ germline: C
1858
+ name: IGHV5-51_star_01_121
1859
+ transitions:
1860
+ IGHV5-51_star_01_122: 1.0
1861
+ - !!python/object:python.hmmwriter.State
1862
+ emissions:
1863
+ probs:
1864
+ A: 0.03587185532259167
1865
+ C: 0.892384434032225
1866
+ G: 0.03587185532259167
1867
+ T: 0.03587185532259167
1868
+ track: nukes
1869
+ extras:
1870
+ ambiguous_char: N
1871
+ ambiguous_emission_prob: 0.25
1872
+ germline: C
1873
+ name: IGHV5-51_star_01_122
1874
+ transitions:
1875
+ IGHV5-51_star_01_123: 1.0
1876
+ - !!python/object:python.hmmwriter.State
1877
+ emissions:
1878
+ probs:
1879
+ A: 0.03587185532259167
1880
+ C: 0.03587185532259167
1881
+ G: 0.892384434032225
1882
+ T: 0.03587185532259167
1883
+ track: nukes
1884
+ extras:
1885
+ ambiguous_char: N
1886
+ ambiguous_emission_prob: 0.25
1887
+ germline: G
1888
+ name: IGHV5-51_star_01_123
1889
+ transitions:
1890
+ IGHV5-51_star_01_124: 1.0
1891
+ - !!python/object:python.hmmwriter.State
1892
+ emissions:
1893
+ probs:
1894
+ A: 0.03587185532259167
1895
+ C: 0.03587185532259167
1896
+ G: 0.892384434032225
1897
+ T: 0.03587185532259167
1898
+ track: nukes
1899
+ extras:
1900
+ ambiguous_char: N
1901
+ ambiguous_emission_prob: 0.25
1902
+ germline: G
1903
+ name: IGHV5-51_star_01_124
1904
+ transitions:
1905
+ IGHV5-51_star_01_125: 1.0
1906
+ - !!python/object:python.hmmwriter.State
1907
+ emissions:
1908
+ probs:
1909
+ A: 0.03587185532259167
1910
+ C: 0.03587185532259167
1911
+ G: 0.892384434032225
1912
+ T: 0.03587185532259167
1913
+ track: nukes
1914
+ extras:
1915
+ ambiguous_char: N
1916
+ ambiguous_emission_prob: 0.25
1917
+ germline: G
1918
+ name: IGHV5-51_star_01_125
1919
+ transitions:
1920
+ IGHV5-51_star_01_126: 1.0
1921
+ - !!python/object:python.hmmwriter.State
1922
+ emissions:
1923
+ probs:
1924
+ A: 0.892384434032225
1925
+ C: 0.03587185532259167
1926
+ G: 0.03587185532259167
1927
+ T: 0.03587185532259167
1928
+ track: nukes
1929
+ extras:
1930
+ ambiguous_char: N
1931
+ ambiguous_emission_prob: 0.25
1932
+ germline: A
1933
+ name: IGHV5-51_star_01_126
1934
+ transitions:
1935
+ IGHV5-51_star_01_127: 1.0
1936
+ - !!python/object:python.hmmwriter.State
1937
+ emissions:
1938
+ probs:
1939
+ A: 0.892384434032225
1940
+ C: 0.03587185532259167
1941
+ G: 0.03587185532259167
1942
+ T: 0.03587185532259167
1943
+ track: nukes
1944
+ extras:
1945
+ ambiguous_char: N
1946
+ ambiguous_emission_prob: 0.25
1947
+ germline: A
1948
+ name: IGHV5-51_star_01_127
1949
+ transitions:
1950
+ IGHV5-51_star_01_128: 1.0
1951
+ - !!python/object:python.hmmwriter.State
1952
+ emissions:
1953
+ probs:
1954
+ A: 0.892384434032225
1955
+ C: 0.03587185532259167
1956
+ G: 0.03587185532259167
1957
+ T: 0.03587185532259167
1958
+ track: nukes
1959
+ extras:
1960
+ ambiguous_char: N
1961
+ ambiguous_emission_prob: 0.25
1962
+ germline: A
1963
+ name: IGHV5-51_star_01_128
1964
+ transitions:
1965
+ IGHV5-51_star_01_129: 1.0
1966
+ - !!python/object:python.hmmwriter.State
1967
+ emissions:
1968
+ probs:
1969
+ A: 0.03587185532259167
1970
+ C: 0.03587185532259167
1971
+ G: 0.892384434032225
1972
+ T: 0.03587185532259167
1973
+ track: nukes
1974
+ extras:
1975
+ ambiguous_char: N
1976
+ ambiguous_emission_prob: 0.25
1977
+ germline: G
1978
+ name: IGHV5-51_star_01_129
1979
+ transitions:
1980
+ IGHV5-51_star_01_130: 1.0
1981
+ - !!python/object:python.hmmwriter.State
1982
+ emissions:
1983
+ probs:
1984
+ A: 0.03587185532259167
1985
+ C: 0.03587185532259167
1986
+ G: 0.892384434032225
1987
+ T: 0.03587185532259167
1988
+ track: nukes
1989
+ extras:
1990
+ ambiguous_char: N
1991
+ ambiguous_emission_prob: 0.25
1992
+ germline: G
1993
+ name: IGHV5-51_star_01_130
1994
+ transitions:
1995
+ IGHV5-51_star_01_131: 1.0
1996
+ - !!python/object:python.hmmwriter.State
1997
+ emissions:
1998
+ probs:
1999
+ A: 0.03587185532259167
2000
+ C: 0.892384434032225
2001
+ G: 0.03587185532259167
2002
+ T: 0.03587185532259167
2003
+ track: nukes
2004
+ extras:
2005
+ ambiguous_char: N
2006
+ ambiguous_emission_prob: 0.25
2007
+ germline: C
2008
+ name: IGHV5-51_star_01_131
2009
+ transitions:
2010
+ IGHV5-51_star_01_132: 1.0
2011
+ - !!python/object:python.hmmwriter.State
2012
+ emissions:
2013
+ probs:
2014
+ A: 0.0375
2015
+ C: 0.8875
2016
+ G: 0.0375
2017
+ T: 0.0375
2018
+ track: nukes
2019
+ extras:
2020
+ ambiguous_char: N
2021
+ ambiguous_emission_prob: 0.25
2022
+ germline: C
2023
+ name: IGHV5-51_star_01_132
2024
+ transitions:
2025
+ IGHV5-51_star_01_133: 1.0
2026
+ - !!python/object:python.hmmwriter.State
2027
+ emissions:
2028
+ probs:
2029
+ A: 0.03587185532259167
2030
+ C: 0.03587185532259167
2031
+ G: 0.03587185532259167
2032
+ T: 0.892384434032225
2033
+ track: nukes
2034
+ extras:
2035
+ ambiguous_char: N
2036
+ ambiguous_emission_prob: 0.25
2037
+ germline: T
2038
+ name: IGHV5-51_star_01_133
2039
+ transitions:
2040
+ IGHV5-51_star_01_134: 1.0
2041
+ - !!python/object:python.hmmwriter.State
2042
+ emissions:
2043
+ probs:
2044
+ A: 0.03587185532259167
2045
+ C: 0.03587185532259167
2046
+ G: 0.892384434032225
2047
+ T: 0.03587185532259167
2048
+ track: nukes
2049
+ extras:
2050
+ ambiguous_char: N
2051
+ ambiguous_emission_prob: 0.25
2052
+ germline: G
2053
+ name: IGHV5-51_star_01_134
2054
+ transitions:
2055
+ IGHV5-51_star_01_135: 1.0
2056
+ - !!python/object:python.hmmwriter.State
2057
+ emissions:
2058
+ probs:
2059
+ A: 0.03587185532259167
2060
+ C: 0.03587185532259167
2061
+ G: 0.892384434032225
2062
+ T: 0.03587185532259167
2063
+ track: nukes
2064
+ extras:
2065
+ ambiguous_char: N
2066
+ ambiguous_emission_prob: 0.25
2067
+ germline: G
2068
+ name: IGHV5-51_star_01_135
2069
+ transitions:
2070
+ IGHV5-51_star_01_136: 1.0
2071
+ - !!python/object:python.hmmwriter.State
2072
+ emissions:
2073
+ probs:
2074
+ A: 0.892384434032225
2075
+ C: 0.03587185532259167
2076
+ G: 0.03587185532259167
2077
+ T: 0.03587185532259167
2078
+ track: nukes
2079
+ extras:
2080
+ ambiguous_char: N
2081
+ ambiguous_emission_prob: 0.25
2082
+ germline: A
2083
+ name: IGHV5-51_star_01_136
2084
+ transitions:
2085
+ IGHV5-51_star_01_137: 1.0
2086
+ - !!python/object:python.hmmwriter.State
2087
+ emissions:
2088
+ probs:
2089
+ A: 0.03587185532259167
2090
+ C: 0.03587185532259167
2091
+ G: 0.892384434032225
2092
+ T: 0.03587185532259167
2093
+ track: nukes
2094
+ extras:
2095
+ ambiguous_char: N
2096
+ ambiguous_emission_prob: 0.25
2097
+ germline: G
2098
+ name: IGHV5-51_star_01_137
2099
+ transitions:
2100
+ IGHV5-51_star_01_138: 1.0
2101
+ - !!python/object:python.hmmwriter.State
2102
+ emissions:
2103
+ probs:
2104
+ A: 0.03587185532259167
2105
+ C: 0.03587185532259167
2106
+ G: 0.03587185532259167
2107
+ T: 0.892384434032225
2108
+ track: nukes
2109
+ extras:
2110
+ ambiguous_char: N
2111
+ ambiguous_emission_prob: 0.25
2112
+ germline: T
2113
+ name: IGHV5-51_star_01_138
2114
+ transitions:
2115
+ IGHV5-51_star_01_139: 1.0
2116
+ - !!python/object:python.hmmwriter.State
2117
+ emissions:
2118
+ probs:
2119
+ A: 0.03587185532259167
2120
+ C: 0.03587185532259167
2121
+ G: 0.892384434032225
2122
+ T: 0.03587185532259167
2123
+ track: nukes
2124
+ extras:
2125
+ ambiguous_char: N
2126
+ ambiguous_emission_prob: 0.25
2127
+ germline: G
2128
+ name: IGHV5-51_star_01_139
2129
+ transitions:
2130
+ IGHV5-51_star_01_140: 1.0
2131
+ - !!python/object:python.hmmwriter.State
2132
+ emissions:
2133
+ probs:
2134
+ A: 0.03587185532259167
2135
+ C: 0.03587185532259167
2136
+ G: 0.892384434032225
2137
+ T: 0.03587185532259167
2138
+ track: nukes
2139
+ extras:
2140
+ ambiguous_char: N
2141
+ ambiguous_emission_prob: 0.25
2142
+ germline: G
2143
+ name: IGHV5-51_star_01_140
2144
+ transitions:
2145
+ IGHV5-51_star_01_141: 1.0
2146
+ - !!python/object:python.hmmwriter.State
2147
+ emissions:
2148
+ probs:
2149
+ A: 0.892384434032225
2150
+ C: 0.03587185532259167
2151
+ G: 0.03587185532259167
2152
+ T: 0.03587185532259167
2153
+ track: nukes
2154
+ extras:
2155
+ ambiguous_char: N
2156
+ ambiguous_emission_prob: 0.25
2157
+ germline: A
2158
+ name: IGHV5-51_star_01_141
2159
+ transitions:
2160
+ IGHV5-51_star_01_142: 1.0
2161
+ - !!python/object:python.hmmwriter.State
2162
+ emissions:
2163
+ probs:
2164
+ A: 0.03587185532259167
2165
+ C: 0.03587185532259167
2166
+ G: 0.03587185532259167
2167
+ T: 0.892384434032225
2168
+ track: nukes
2169
+ extras:
2170
+ ambiguous_char: N
2171
+ ambiguous_emission_prob: 0.25
2172
+ germline: T
2173
+ name: IGHV5-51_star_01_142
2174
+ transitions:
2175
+ IGHV5-51_star_01_143: 1.0
2176
+ - !!python/object:python.hmmwriter.State
2177
+ emissions:
2178
+ probs:
2179
+ A: 0.03587185532259167
2180
+ C: 0.03587185532259167
2181
+ G: 0.892384434032225
2182
+ T: 0.03587185532259167
2183
+ track: nukes
2184
+ extras:
2185
+ ambiguous_char: N
2186
+ ambiguous_emission_prob: 0.25
2187
+ germline: G
2188
+ name: IGHV5-51_star_01_143
2189
+ transitions:
2190
+ IGHV5-51_star_01_144: 1.0
2191
+ - !!python/object:python.hmmwriter.State
2192
+ emissions:
2193
+ probs:
2194
+ A: 0.03587185532259167
2195
+ C: 0.03587185532259167
2196
+ G: 0.892384434032225
2197
+ T: 0.03587185532259167
2198
+ track: nukes
2199
+ extras:
2200
+ ambiguous_char: N
2201
+ ambiguous_emission_prob: 0.25
2202
+ germline: G
2203
+ name: IGHV5-51_star_01_144
2204
+ transitions:
2205
+ IGHV5-51_star_01_145: 1.0
2206
+ - !!python/object:python.hmmwriter.State
2207
+ emissions:
2208
+ probs:
2209
+ A: 0.03587185532259167
2210
+ C: 0.03587185532259167
2211
+ G: 0.892384434032225
2212
+ T: 0.03587185532259167
2213
+ track: nukes
2214
+ extras:
2215
+ ambiguous_char: N
2216
+ ambiguous_emission_prob: 0.25
2217
+ germline: G
2218
+ name: IGHV5-51_star_01_145
2219
+ transitions:
2220
+ IGHV5-51_star_01_146: 1.0
2221
+ - !!python/object:python.hmmwriter.State
2222
+ emissions:
2223
+ probs:
2224
+ A: 0.03587185532259167
2225
+ C: 0.03587185532259167
2226
+ G: 0.892384434032225
2227
+ T: 0.03587185532259167
2228
+ track: nukes
2229
+ extras:
2230
+ ambiguous_char: N
2231
+ ambiguous_emission_prob: 0.25
2232
+ germline: G
2233
+ name: IGHV5-51_star_01_146
2234
+ transitions:
2235
+ IGHV5-51_star_01_147: 1.0
2236
+ - !!python/object:python.hmmwriter.State
2237
+ emissions:
2238
+ probs:
2239
+ A: 0.892384434032225
2240
+ C: 0.03587185532259167
2241
+ G: 0.03587185532259167
2242
+ T: 0.03587185532259167
2243
+ track: nukes
2244
+ extras:
2245
+ ambiguous_char: N
2246
+ ambiguous_emission_prob: 0.25
2247
+ germline: A
2248
+ name: IGHV5-51_star_01_147
2249
+ transitions:
2250
+ IGHV5-51_star_01_148: 1.0
2251
+ - !!python/object:python.hmmwriter.State
2252
+ emissions:
2253
+ probs:
2254
+ A: 0.03587185532259167
2255
+ C: 0.03587185532259167
2256
+ G: 0.03587185532259167
2257
+ T: 0.892384434032225
2258
+ track: nukes
2259
+ extras:
2260
+ ambiguous_char: N
2261
+ ambiguous_emission_prob: 0.25
2262
+ germline: T
2263
+ name: IGHV5-51_star_01_148
2264
+ transitions:
2265
+ IGHV5-51_star_01_149: 1.0
2266
+ - !!python/object:python.hmmwriter.State
2267
+ emissions:
2268
+ probs:
2269
+ A: 0.03587185532259167
2270
+ C: 0.892384434032225
2271
+ G: 0.03587185532259167
2272
+ T: 0.03587185532259167
2273
+ track: nukes
2274
+ extras:
2275
+ ambiguous_char: N
2276
+ ambiguous_emission_prob: 0.25
2277
+ germline: C
2278
+ name: IGHV5-51_star_01_149
2279
+ transitions:
2280
+ IGHV5-51_star_01_150: 1.0
2281
+ - !!python/object:python.hmmwriter.State
2282
+ emissions:
2283
+ probs:
2284
+ A: 0.892384434032225
2285
+ C: 0.03587185532259167
2286
+ G: 0.03587185532259167
2287
+ T: 0.03587185532259167
2288
+ track: nukes
2289
+ extras:
2290
+ ambiguous_char: N
2291
+ ambiguous_emission_prob: 0.25
2292
+ germline: A
2293
+ name: IGHV5-51_star_01_150
2294
+ transitions:
2295
+ IGHV5-51_star_01_151: 1.0
2296
+ - !!python/object:python.hmmwriter.State
2297
+ emissions:
2298
+ probs:
2299
+ A: 0.03587185532259167
2300
+ C: 0.03587185532259167
2301
+ G: 0.03587185532259167
2302
+ T: 0.892384434032225
2303
+ track: nukes
2304
+ extras:
2305
+ ambiguous_char: N
2306
+ ambiguous_emission_prob: 0.25
2307
+ germline: T
2308
+ name: IGHV5-51_star_01_151
2309
+ transitions:
2310
+ IGHV5-51_star_01_152: 1.0
2311
+ - !!python/object:python.hmmwriter.State
2312
+ emissions:
2313
+ probs:
2314
+ A: 0.03587185532259167
2315
+ C: 0.892384434032225
2316
+ G: 0.03587185532259167
2317
+ T: 0.03587185532259167
2318
+ track: nukes
2319
+ extras:
2320
+ ambiguous_char: N
2321
+ ambiguous_emission_prob: 0.25
2322
+ germline: C
2323
+ name: IGHV5-51_star_01_152
2324
+ transitions:
2325
+ IGHV5-51_star_01_153: 1.0
2326
+ - !!python/object:python.hmmwriter.State
2327
+ emissions:
2328
+ probs:
2329
+ A: 0.03587185532259167
2330
+ C: 0.03587185532259167
2331
+ G: 0.03587185532259167
2332
+ T: 0.892384434032225
2333
+ track: nukes
2334
+ extras:
2335
+ ambiguous_char: N
2336
+ ambiguous_emission_prob: 0.25
2337
+ germline: T
2338
+ name: IGHV5-51_star_01_153
2339
+ transitions:
2340
+ IGHV5-51_star_01_154: 1.0
2341
+ - !!python/object:python.hmmwriter.State
2342
+ emissions:
2343
+ probs:
2344
+ A: 0.892384434032225
2345
+ C: 0.03587185532259167
2346
+ G: 0.03587185532259167
2347
+ T: 0.03587185532259167
2348
+ track: nukes
2349
+ extras:
2350
+ ambiguous_char: N
2351
+ ambiguous_emission_prob: 0.25
2352
+ germline: A
2353
+ name: IGHV5-51_star_01_154
2354
+ transitions:
2355
+ IGHV5-51_star_01_155: 1.0
2356
+ - !!python/object:python.hmmwriter.State
2357
+ emissions:
2358
+ probs:
2359
+ A: 0.03587185532259167
2360
+ C: 0.03587185532259167
2361
+ G: 0.03587185532259167
2362
+ T: 0.892384434032225
2363
+ track: nukes
2364
+ extras:
2365
+ ambiguous_char: N
2366
+ ambiguous_emission_prob: 0.25
2367
+ germline: T
2368
+ name: IGHV5-51_star_01_155
2369
+ transitions:
2370
+ IGHV5-51_star_01_156: 1.0
2371
+ - !!python/object:python.hmmwriter.State
2372
+ emissions:
2373
+ probs:
2374
+ A: 0.03587185532259167
2375
+ C: 0.892384434032225
2376
+ G: 0.03587185532259167
2377
+ T: 0.03587185532259167
2378
+ track: nukes
2379
+ extras:
2380
+ ambiguous_char: N
2381
+ ambiguous_emission_prob: 0.25
2382
+ germline: C
2383
+ name: IGHV5-51_star_01_156
2384
+ transitions:
2385
+ IGHV5-51_star_01_157: 1.0
2386
+ - !!python/object:python.hmmwriter.State
2387
+ emissions:
2388
+ probs:
2389
+ A: 0.03587185532259167
2390
+ C: 0.892384434032225
2391
+ G: 0.03587185532259167
2392
+ T: 0.03587185532259167
2393
+ track: nukes
2394
+ extras:
2395
+ ambiguous_char: N
2396
+ ambiguous_emission_prob: 0.25
2397
+ germline: C
2398
+ name: IGHV5-51_star_01_157
2399
+ transitions:
2400
+ IGHV5-51_star_01_158: 1.0
2401
+ - !!python/object:python.hmmwriter.State
2402
+ emissions:
2403
+ probs:
2404
+ A: 0.03587185532259167
2405
+ C: 0.03587185532259167
2406
+ G: 0.03587185532259167
2407
+ T: 0.892384434032225
2408
+ track: nukes
2409
+ extras:
2410
+ ambiguous_char: N
2411
+ ambiguous_emission_prob: 0.25
2412
+ germline: T
2413
+ name: IGHV5-51_star_01_158
2414
+ transitions:
2415
+ IGHV5-51_star_01_159: 1.0
2416
+ - !!python/object:python.hmmwriter.State
2417
+ emissions:
2418
+ probs:
2419
+ A: 0.03587185532259167
2420
+ C: 0.03587185532259167
2421
+ G: 0.892384434032225
2422
+ T: 0.03587185532259167
2423
+ track: nukes
2424
+ extras:
2425
+ ambiguous_char: N
2426
+ ambiguous_emission_prob: 0.25
2427
+ germline: G
2428
+ name: IGHV5-51_star_01_159
2429
+ transitions:
2430
+ IGHV5-51_star_01_160: 1.0
2431
+ - !!python/object:python.hmmwriter.State
2432
+ emissions:
2433
+ probs:
2434
+ A: 0.03587185532259167
2435
+ C: 0.03587185532259167
2436
+ G: 0.892384434032225
2437
+ T: 0.03587185532259167
2438
+ track: nukes
2439
+ extras:
2440
+ ambiguous_char: N
2441
+ ambiguous_emission_prob: 0.25
2442
+ germline: G
2443
+ name: IGHV5-51_star_01_160
2444
+ transitions:
2445
+ IGHV5-51_star_01_161: 1.0
2446
+ - !!python/object:python.hmmwriter.State
2447
+ emissions:
2448
+ probs:
2449
+ A: 0.03587185532259167
2450
+ C: 0.03587185532259167
2451
+ G: 0.03587185532259167
2452
+ T: 0.892384434032225
2453
+ track: nukes
2454
+ extras:
2455
+ ambiguous_char: N
2456
+ ambiguous_emission_prob: 0.25
2457
+ germline: T
2458
+ name: IGHV5-51_star_01_161
2459
+ transitions:
2460
+ IGHV5-51_star_01_162: 1.0
2461
+ - !!python/object:python.hmmwriter.State
2462
+ emissions:
2463
+ probs:
2464
+ A: 0.03587185532259167
2465
+ C: 0.03587185532259167
2466
+ G: 0.892384434032225
2467
+ T: 0.03587185532259167
2468
+ track: nukes
2469
+ extras:
2470
+ ambiguous_char: N
2471
+ ambiguous_emission_prob: 0.25
2472
+ germline: G
2473
+ name: IGHV5-51_star_01_162
2474
+ transitions:
2475
+ IGHV5-51_star_01_163: 1.0
2476
+ - !!python/object:python.hmmwriter.State
2477
+ emissions:
2478
+ probs:
2479
+ A: 0.892384434032225
2480
+ C: 0.03587185532259167
2481
+ G: 0.03587185532259167
2482
+ T: 0.03587185532259167
2483
+ track: nukes
2484
+ extras:
2485
+ ambiguous_char: N
2486
+ ambiguous_emission_prob: 0.25
2487
+ germline: A
2488
+ name: IGHV5-51_star_01_163
2489
+ transitions:
2490
+ IGHV5-51_star_01_164: 1.0
2491
+ - !!python/object:python.hmmwriter.State
2492
+ emissions:
2493
+ probs:
2494
+ A: 0.03587185532259167
2495
+ C: 0.892384434032225
2496
+ G: 0.03587185532259167
2497
+ T: 0.03587185532259167
2498
+ track: nukes
2499
+ extras:
2500
+ ambiguous_char: N
2501
+ ambiguous_emission_prob: 0.25
2502
+ germline: C
2503
+ name: IGHV5-51_star_01_164
2504
+ transitions:
2505
+ IGHV5-51_star_01_165: 1.0
2506
+ - !!python/object:python.hmmwriter.State
2507
+ emissions:
2508
+ probs:
2509
+ A: 0.03587185532259167
2510
+ C: 0.03587185532259167
2511
+ G: 0.03587185532259167
2512
+ T: 0.892384434032225
2513
+ track: nukes
2514
+ extras:
2515
+ ambiguous_char: N
2516
+ ambiguous_emission_prob: 0.25
2517
+ germline: T
2518
+ name: IGHV5-51_star_01_165
2519
+ transitions:
2520
+ IGHV5-51_star_01_166: 1.0
2521
+ - !!python/object:python.hmmwriter.State
2522
+ emissions:
2523
+ probs:
2524
+ A: 0.03587185532259167
2525
+ C: 0.892384434032225
2526
+ G: 0.03587185532259167
2527
+ T: 0.03587185532259167
2528
+ track: nukes
2529
+ extras:
2530
+ ambiguous_char: N
2531
+ ambiguous_emission_prob: 0.25
2532
+ germline: C
2533
+ name: IGHV5-51_star_01_166
2534
+ transitions:
2535
+ IGHV5-51_star_01_167: 1.0
2536
+ - !!python/object:python.hmmwriter.State
2537
+ emissions:
2538
+ probs:
2539
+ A: 0.03587185532259167
2540
+ C: 0.03587185532259167
2541
+ G: 0.03587185532259167
2542
+ T: 0.892384434032225
2543
+ track: nukes
2544
+ extras:
2545
+ ambiguous_char: N
2546
+ ambiguous_emission_prob: 0.25
2547
+ germline: T
2548
+ name: IGHV5-51_star_01_167
2549
+ transitions:
2550
+ IGHV5-51_star_01_168: 1.0
2551
+ - !!python/object:python.hmmwriter.State
2552
+ emissions:
2553
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2554
+ A: 0.03587185532259167
2555
+ C: 0.03587185532259167
2556
+ G: 0.892384434032225
2557
+ T: 0.03587185532259167
2558
+ track: nukes
2559
+ extras:
2560
+ ambiguous_char: N
2561
+ ambiguous_emission_prob: 0.25
2562
+ germline: G
2563
+ name: IGHV5-51_star_01_168
2564
+ transitions:
2565
+ IGHV5-51_star_01_169: 1.0
2566
+ - !!python/object:python.hmmwriter.State
2567
+ emissions:
2568
+ probs:
2569
+ A: 0.892384434032225
2570
+ C: 0.03587185532259167
2571
+ G: 0.03587185532259167
2572
+ T: 0.03587185532259167
2573
+ track: nukes
2574
+ extras:
2575
+ ambiguous_char: N
2576
+ ambiguous_emission_prob: 0.25
2577
+ germline: A
2578
+ name: IGHV5-51_star_01_169
2579
+ transitions:
2580
+ IGHV5-51_star_01_170: 1.0
2581
+ - !!python/object:python.hmmwriter.State
2582
+ emissions:
2583
+ probs:
2584
+ A: 0.03587185532259167
2585
+ C: 0.03587185532259167
2586
+ G: 0.03587185532259167
2587
+ T: 0.892384434032225
2588
+ track: nukes
2589
+ extras:
2590
+ ambiguous_char: N
2591
+ ambiguous_emission_prob: 0.25
2592
+ germline: T
2593
+ name: IGHV5-51_star_01_170
2594
+ transitions:
2595
+ IGHV5-51_star_01_171: 1.0
2596
+ - !!python/object:python.hmmwriter.State
2597
+ emissions:
2598
+ probs:
2599
+ A: 0.892384434032225
2600
+ C: 0.03587185532259167
2601
+ G: 0.03587185532259167
2602
+ T: 0.03587185532259167
2603
+ track: nukes
2604
+ extras:
2605
+ ambiguous_char: N
2606
+ ambiguous_emission_prob: 0.25
2607
+ germline: A
2608
+ name: IGHV5-51_star_01_171
2609
+ transitions:
2610
+ IGHV5-51_star_01_172: 1.0
2611
+ - !!python/object:python.hmmwriter.State
2612
+ emissions:
2613
+ probs:
2614
+ A: 0.03587185532259167
2615
+ C: 0.892384434032225
2616
+ G: 0.03587185532259167
2617
+ T: 0.03587185532259167
2618
+ track: nukes
2619
+ extras:
2620
+ ambiguous_char: N
2621
+ ambiguous_emission_prob: 0.25
2622
+ germline: C
2623
+ name: IGHV5-51_star_01_172
2624
+ transitions:
2625
+ IGHV5-51_star_01_173: 1.0
2626
+ - !!python/object:python.hmmwriter.State
2627
+ emissions:
2628
+ probs:
2629
+ A: 0.03587185532259167
2630
+ C: 0.892384434032225
2631
+ G: 0.03587185532259167
2632
+ T: 0.03587185532259167
2633
+ track: nukes
2634
+ extras:
2635
+ ambiguous_char: N
2636
+ ambiguous_emission_prob: 0.25
2637
+ germline: C
2638
+ name: IGHV5-51_star_01_173
2639
+ transitions:
2640
+ IGHV5-51_star_01_174: 1.0
2641
+ - !!python/object:python.hmmwriter.State
2642
+ emissions:
2643
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2644
+ A: 0.892384434032225
2645
+ C: 0.03587185532259167
2646
+ G: 0.03587185532259167
2647
+ T: 0.03587185532259167
2648
+ track: nukes
2649
+ extras:
2650
+ ambiguous_char: N
2651
+ ambiguous_emission_prob: 0.25
2652
+ germline: A
2653
+ name: IGHV5-51_star_01_174
2654
+ transitions:
2655
+ IGHV5-51_star_01_175: 1.0
2656
+ - !!python/object:python.hmmwriter.State
2657
+ emissions:
2658
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2659
+ A: 0.03587185532259167
2660
+ C: 0.03587185532259167
2661
+ G: 0.892384434032225
2662
+ T: 0.03587185532259167
2663
+ track: nukes
2664
+ extras:
2665
+ ambiguous_char: N
2666
+ ambiguous_emission_prob: 0.25
2667
+ germline: G
2668
+ name: IGHV5-51_star_01_175
2669
+ transitions:
2670
+ IGHV5-51_star_01_176: 1.0
2671
+ - !!python/object:python.hmmwriter.State
2672
+ emissions:
2673
+ probs:
2674
+ A: 0.892384434032225
2675
+ C: 0.03587185532259167
2676
+ G: 0.03587185532259167
2677
+ T: 0.03587185532259167
2678
+ track: nukes
2679
+ extras:
2680
+ ambiguous_char: N
2681
+ ambiguous_emission_prob: 0.25
2682
+ germline: A
2683
+ name: IGHV5-51_star_01_176
2684
+ transitions:
2685
+ IGHV5-51_star_01_177: 1.0
2686
+ - !!python/object:python.hmmwriter.State
2687
+ emissions:
2688
+ probs:
2689
+ A: 0.03587185532259167
2690
+ C: 0.03587185532259167
2691
+ G: 0.03587185532259167
2692
+ T: 0.892384434032225
2693
+ track: nukes
2694
+ extras:
2695
+ ambiguous_char: N
2696
+ ambiguous_emission_prob: 0.25
2697
+ germline: T
2698
+ name: IGHV5-51_star_01_177
2699
+ transitions:
2700
+ IGHV5-51_star_01_178: 1.0
2701
+ - !!python/object:python.hmmwriter.State
2702
+ emissions:
2703
+ probs:
2704
+ A: 0.892384434032225
2705
+ C: 0.03587185532259167
2706
+ G: 0.03587185532259167
2707
+ T: 0.03587185532259167
2708
+ track: nukes
2709
+ extras:
2710
+ ambiguous_char: N
2711
+ ambiguous_emission_prob: 0.25
2712
+ germline: A
2713
+ name: IGHV5-51_star_01_178
2714
+ transitions:
2715
+ IGHV5-51_star_01_179: 1.0
2716
+ - !!python/object:python.hmmwriter.State
2717
+ emissions:
2718
+ probs:
2719
+ A: 0.03587185532259167
2720
+ C: 0.892384434032225
2721
+ G: 0.03587185532259167
2722
+ T: 0.03587185532259167
2723
+ track: nukes
2724
+ extras:
2725
+ ambiguous_char: N
2726
+ ambiguous_emission_prob: 0.25
2727
+ germline: C
2728
+ name: IGHV5-51_star_01_179
2729
+ transitions:
2730
+ IGHV5-51_star_01_180: 1.0
2731
+ - !!python/object:python.hmmwriter.State
2732
+ emissions:
2733
+ probs:
2734
+ A: 0.892384434032225
2735
+ C: 0.03587185532259167
2736
+ G: 0.03587185532259167
2737
+ T: 0.03587185532259167
2738
+ track: nukes
2739
+ extras:
2740
+ ambiguous_char: N
2741
+ ambiguous_emission_prob: 0.25
2742
+ germline: A
2743
+ name: IGHV5-51_star_01_180
2744
+ transitions:
2745
+ IGHV5-51_star_01_181: 1.0
2746
+ - !!python/object:python.hmmwriter.State
2747
+ emissions:
2748
+ probs:
2749
+ A: 0.03587185532259167
2750
+ C: 0.03587185532259167
2751
+ G: 0.892384434032225
2752
+ T: 0.03587185532259167
2753
+ track: nukes
2754
+ extras:
2755
+ ambiguous_char: N
2756
+ ambiguous_emission_prob: 0.25
2757
+ germline: G
2758
+ name: IGHV5-51_star_01_181
2759
+ transitions:
2760
+ IGHV5-51_star_01_182: 1.0
2761
+ - !!python/object:python.hmmwriter.State
2762
+ emissions:
2763
+ probs:
2764
+ A: 0.03587185532259167
2765
+ C: 0.892384434032225
2766
+ G: 0.03587185532259167
2767
+ T: 0.03587185532259167
2768
+ track: nukes
2769
+ extras:
2770
+ ambiguous_char: N
2771
+ ambiguous_emission_prob: 0.25
2772
+ germline: C
2773
+ name: IGHV5-51_star_01_182
2774
+ transitions:
2775
+ IGHV5-51_star_01_183: 1.0
2776
+ - !!python/object:python.hmmwriter.State
2777
+ emissions:
2778
+ probs:
2779
+ A: 0.03587185532259167
2780
+ C: 0.892384434032225
2781
+ G: 0.03587185532259167
2782
+ T: 0.03587185532259167
2783
+ track: nukes
2784
+ extras:
2785
+ ambiguous_char: N
2786
+ ambiguous_emission_prob: 0.25
2787
+ germline: C
2788
+ name: IGHV5-51_star_01_183
2789
+ transitions:
2790
+ IGHV5-51_star_01_184: 1.0
2791
+ - !!python/object:python.hmmwriter.State
2792
+ emissions:
2793
+ probs:
2794
+ A: 0.03587185532259167
2795
+ C: 0.892384434032225
2796
+ G: 0.03587185532259167
2797
+ T: 0.03587185532259167
2798
+ track: nukes
2799
+ extras:
2800
+ ambiguous_char: N
2801
+ ambiguous_emission_prob: 0.25
2802
+ germline: C
2803
+ name: IGHV5-51_star_01_184
2804
+ transitions:
2805
+ IGHV5-51_star_01_185: 1.0
2806
+ - !!python/object:python.hmmwriter.State
2807
+ emissions:
2808
+ probs:
2809
+ A: 0.03587185532259167
2810
+ C: 0.03587185532259167
2811
+ G: 0.892384434032225
2812
+ T: 0.03587185532259167
2813
+ track: nukes
2814
+ extras:
2815
+ ambiguous_char: N
2816
+ ambiguous_emission_prob: 0.25
2817
+ germline: G
2818
+ name: IGHV5-51_star_01_185
2819
+ transitions:
2820
+ IGHV5-51_star_01_186: 1.0
2821
+ - !!python/object:python.hmmwriter.State
2822
+ emissions:
2823
+ probs:
2824
+ A: 0.03587185532259167
2825
+ C: 0.03587185532259167
2826
+ G: 0.03587185532259167
2827
+ T: 0.892384434032225
2828
+ track: nukes
2829
+ extras:
2830
+ ambiguous_char: N
2831
+ ambiguous_emission_prob: 0.25
2832
+ germline: T
2833
+ name: IGHV5-51_star_01_186
2834
+ transitions:
2835
+ IGHV5-51_star_01_187: 1.0
2836
+ - !!python/object:python.hmmwriter.State
2837
+ emissions:
2838
+ probs:
2839
+ A: 0.03587185532259167
2840
+ C: 0.892384434032225
2841
+ G: 0.03587185532259167
2842
+ T: 0.03587185532259167
2843
+ track: nukes
2844
+ extras:
2845
+ ambiguous_char: N
2846
+ ambiguous_emission_prob: 0.25
2847
+ germline: C
2848
+ name: IGHV5-51_star_01_187
2849
+ transitions:
2850
+ IGHV5-51_star_01_188: 1.0
2851
+ - !!python/object:python.hmmwriter.State
2852
+ emissions:
2853
+ probs:
2854
+ A: 0.03587185532259167
2855
+ C: 0.892384434032225
2856
+ G: 0.03587185532259167
2857
+ T: 0.03587185532259167
2858
+ track: nukes
2859
+ extras:
2860
+ ambiguous_char: N
2861
+ ambiguous_emission_prob: 0.25
2862
+ germline: C
2863
+ name: IGHV5-51_star_01_188
2864
+ transitions:
2865
+ IGHV5-51_star_01_189: 1.0
2866
+ - !!python/object:python.hmmwriter.State
2867
+ emissions:
2868
+ probs:
2869
+ A: 0.03587185532259167
2870
+ C: 0.03587185532259167
2871
+ G: 0.03587185532259167
2872
+ T: 0.892384434032225
2873
+ track: nukes
2874
+ extras:
2875
+ ambiguous_char: N
2876
+ ambiguous_emission_prob: 0.25
2877
+ germline: T
2878
+ name: IGHV5-51_star_01_189
2879
+ transitions:
2880
+ IGHV5-51_star_01_190: 1.0
2881
+ - !!python/object:python.hmmwriter.State
2882
+ emissions:
2883
+ probs:
2884
+ A: 0.03587185532259167
2885
+ C: 0.03587185532259167
2886
+ G: 0.03587185532259167
2887
+ T: 0.892384434032225
2888
+ track: nukes
2889
+ extras:
2890
+ ambiguous_char: N
2891
+ ambiguous_emission_prob: 0.25
2892
+ germline: T
2893
+ name: IGHV5-51_star_01_190
2894
+ transitions:
2895
+ IGHV5-51_star_01_191: 1.0
2896
+ - !!python/object:python.hmmwriter.State
2897
+ emissions:
2898
+ probs:
2899
+ A: 0.03587185532259167
2900
+ C: 0.892384434032225
2901
+ G: 0.03587185532259167
2902
+ T: 0.03587185532259167
2903
+ track: nukes
2904
+ extras:
2905
+ ambiguous_char: N
2906
+ ambiguous_emission_prob: 0.25
2907
+ germline: C
2908
+ name: IGHV5-51_star_01_191
2909
+ transitions:
2910
+ IGHV5-51_star_01_192: 1.0
2911
+ - !!python/object:python.hmmwriter.State
2912
+ emissions:
2913
+ probs:
2914
+ A: 0.03587185532259167
2915
+ C: 0.892384434032225
2916
+ G: 0.03587185532259167
2917
+ T: 0.03587185532259167
2918
+ track: nukes
2919
+ extras:
2920
+ ambiguous_char: N
2921
+ ambiguous_emission_prob: 0.25
2922
+ germline: C
2923
+ name: IGHV5-51_star_01_192
2924
+ transitions:
2925
+ IGHV5-51_star_01_193: 1.0
2926
+ - !!python/object:python.hmmwriter.State
2927
+ emissions:
2928
+ probs:
2929
+ A: 0.892384434032225
2930
+ C: 0.03587185532259167
2931
+ G: 0.03587185532259167
2932
+ T: 0.03587185532259167
2933
+ track: nukes
2934
+ extras:
2935
+ ambiguous_char: N
2936
+ ambiguous_emission_prob: 0.25
2937
+ germline: A
2938
+ name: IGHV5-51_star_01_193
2939
+ transitions:
2940
+ IGHV5-51_star_01_194: 1.0
2941
+ - !!python/object:python.hmmwriter.State
2942
+ emissions:
2943
+ probs:
2944
+ A: 0.892384434032225
2945
+ C: 0.03587185532259167
2946
+ G: 0.03587185532259167
2947
+ T: 0.03587185532259167
2948
+ track: nukes
2949
+ extras:
2950
+ ambiguous_char: N
2951
+ ambiguous_emission_prob: 0.25
2952
+ germline: A
2953
+ name: IGHV5-51_star_01_194
2954
+ transitions:
2955
+ IGHV5-51_star_01_195: 1.0
2956
+ - !!python/object:python.hmmwriter.State
2957
+ emissions:
2958
+ probs:
2959
+ A: 0.03587185532259167
2960
+ C: 0.03587185532259167
2961
+ G: 0.892384434032225
2962
+ T: 0.03587185532259167
2963
+ track: nukes
2964
+ extras:
2965
+ ambiguous_char: N
2966
+ ambiguous_emission_prob: 0.25
2967
+ germline: G
2968
+ name: IGHV5-51_star_01_195
2969
+ transitions:
2970
+ IGHV5-51_star_01_196: 1.0
2971
+ - !!python/object:python.hmmwriter.State
2972
+ emissions:
2973
+ probs:
2974
+ A: 0.03587185532259167
2975
+ C: 0.03587185532259167
2976
+ G: 0.892384434032225
2977
+ T: 0.03587185532259167
2978
+ track: nukes
2979
+ extras:
2980
+ ambiguous_char: N
2981
+ ambiguous_emission_prob: 0.25
2982
+ germline: G
2983
+ name: IGHV5-51_star_01_196
2984
+ transitions:
2985
+ IGHV5-51_star_01_197: 1.0
2986
+ - !!python/object:python.hmmwriter.State
2987
+ emissions:
2988
+ probs:
2989
+ A: 0.03587185532259167
2990
+ C: 0.892384434032225
2991
+ G: 0.03587185532259167
2992
+ T: 0.03587185532259167
2993
+ track: nukes
2994
+ extras:
2995
+ ambiguous_char: N
2996
+ ambiguous_emission_prob: 0.25
2997
+ germline: C
2998
+ name: IGHV5-51_star_01_197
2999
+ transitions:
3000
+ IGHV5-51_star_01_198: 1.0
3001
+ - !!python/object:python.hmmwriter.State
3002
+ emissions:
3003
+ probs:
3004
+ A: 0.03587185532259167
3005
+ C: 0.892384434032225
3006
+ G: 0.03587185532259167
3007
+ T: 0.03587185532259167
3008
+ track: nukes
3009
+ extras:
3010
+ ambiguous_char: N
3011
+ ambiguous_emission_prob: 0.25
3012
+ germline: C
3013
+ name: IGHV5-51_star_01_198
3014
+ transitions:
3015
+ IGHV5-51_star_01_199: 1.0
3016
+ - !!python/object:python.hmmwriter.State
3017
+ emissions:
3018
+ probs:
3019
+ A: 0.892384434032225
3020
+ C: 0.03587185532259167
3021
+ G: 0.03587185532259167
3022
+ T: 0.03587185532259167
3023
+ track: nukes
3024
+ extras:
3025
+ ambiguous_char: N
3026
+ ambiguous_emission_prob: 0.25
3027
+ germline: A
3028
+ name: IGHV5-51_star_01_199
3029
+ transitions:
3030
+ IGHV5-51_star_01_200: 1.0
3031
+ - !!python/object:python.hmmwriter.State
3032
+ emissions:
3033
+ probs:
3034
+ A: 0.03587185532259167
3035
+ C: 0.03587185532259167
3036
+ G: 0.892384434032225
3037
+ T: 0.03587185532259167
3038
+ track: nukes
3039
+ extras:
3040
+ ambiguous_char: N
3041
+ ambiguous_emission_prob: 0.25
3042
+ germline: G
3043
+ name: IGHV5-51_star_01_200
3044
+ transitions:
3045
+ IGHV5-51_star_01_201: 1.0
3046
+ - !!python/object:python.hmmwriter.State
3047
+ emissions:
3048
+ probs:
3049
+ A: 0.03587185532259167
3050
+ C: 0.03587185532259167
3051
+ G: 0.892384434032225
3052
+ T: 0.03587185532259167
3053
+ track: nukes
3054
+ extras:
3055
+ ambiguous_char: N
3056
+ ambiguous_emission_prob: 0.25
3057
+ germline: G
3058
+ name: IGHV5-51_star_01_201
3059
+ transitions:
3060
+ IGHV5-51_star_01_202: 1.0
3061
+ - !!python/object:python.hmmwriter.State
3062
+ emissions:
3063
+ probs:
3064
+ A: 0.03587185532259167
3065
+ C: 0.03587185532259167
3066
+ G: 0.03587185532259167
3067
+ T: 0.892384434032225
3068
+ track: nukes
3069
+ extras:
3070
+ ambiguous_char: N
3071
+ ambiguous_emission_prob: 0.25
3072
+ germline: T
3073
+ name: IGHV5-51_star_01_202
3074
+ transitions:
3075
+ IGHV5-51_star_01_203: 1.0
3076
+ - !!python/object:python.hmmwriter.State
3077
+ emissions:
3078
+ probs:
3079
+ A: 0.03587185532259167
3080
+ C: 0.892384434032225
3081
+ G: 0.03587185532259167
3082
+ T: 0.03587185532259167
3083
+ track: nukes
3084
+ extras:
3085
+ ambiguous_char: N
3086
+ ambiguous_emission_prob: 0.25
3087
+ germline: C
3088
+ name: IGHV5-51_star_01_203
3089
+ transitions:
3090
+ IGHV5-51_star_01_204: 1.0
3091
+ - !!python/object:python.hmmwriter.State
3092
+ emissions:
3093
+ probs:
3094
+ A: 0.892384434032225
3095
+ C: 0.03587185532259167
3096
+ G: 0.03587185532259167
3097
+ T: 0.03587185532259167
3098
+ track: nukes
3099
+ extras:
3100
+ ambiguous_char: N
3101
+ ambiguous_emission_prob: 0.25
3102
+ germline: A
3103
+ name: IGHV5-51_star_01_204
3104
+ transitions:
3105
+ IGHV5-51_star_01_205: 1.0
3106
+ - !!python/object:python.hmmwriter.State
3107
+ emissions:
3108
+ probs:
3109
+ A: 0.03587185532259167
3110
+ C: 0.892384434032225
3111
+ G: 0.03587185532259167
3112
+ T: 0.03587185532259167
3113
+ track: nukes
3114
+ extras:
3115
+ ambiguous_char: N
3116
+ ambiguous_emission_prob: 0.25
3117
+ germline: C
3118
+ name: IGHV5-51_star_01_205
3119
+ transitions:
3120
+ IGHV5-51_star_01_206: 1.0
3121
+ - !!python/object:python.hmmwriter.State
3122
+ emissions:
3123
+ probs:
3124
+ A: 0.03587185532259167
3125
+ C: 0.892384434032225
3126
+ G: 0.03587185532259167
3127
+ T: 0.03587185532259167
3128
+ track: nukes
3129
+ extras:
3130
+ ambiguous_char: N
3131
+ ambiguous_emission_prob: 0.25
3132
+ germline: C
3133
+ name: IGHV5-51_star_01_206
3134
+ transitions:
3135
+ IGHV5-51_star_01_207: 1.0
3136
+ - !!python/object:python.hmmwriter.State
3137
+ emissions:
3138
+ probs:
3139
+ A: 0.892384434032225
3140
+ C: 0.03587185532259167
3141
+ G: 0.03587185532259167
3142
+ T: 0.03587185532259167
3143
+ track: nukes
3144
+ extras:
3145
+ ambiguous_char: N
3146
+ ambiguous_emission_prob: 0.25
3147
+ germline: A
3148
+ name: IGHV5-51_star_01_207
3149
+ transitions:
3150
+ IGHV5-51_star_01_208: 1.0
3151
+ - !!python/object:python.hmmwriter.State
3152
+ emissions:
3153
+ probs:
3154
+ A: 0.03587185532259167
3155
+ C: 0.03587185532259167
3156
+ G: 0.03587185532259167
3157
+ T: 0.892384434032225
3158
+ track: nukes
3159
+ extras:
3160
+ ambiguous_char: N
3161
+ ambiguous_emission_prob: 0.25
3162
+ germline: T
3163
+ name: IGHV5-51_star_01_208
3164
+ transitions:
3165
+ IGHV5-51_star_01_209: 1.0
3166
+ - !!python/object:python.hmmwriter.State
3167
+ emissions:
3168
+ probs:
3169
+ A: 0.03587185532259167
3170
+ C: 0.892384434032225
3171
+ G: 0.03587185532259167
3172
+ T: 0.03587185532259167
3173
+ track: nukes
3174
+ extras:
3175
+ ambiguous_char: N
3176
+ ambiguous_emission_prob: 0.25
3177
+ germline: C
3178
+ name: IGHV5-51_star_01_209
3179
+ transitions:
3180
+ IGHV5-51_star_01_210: 1.0
3181
+ - !!python/object:python.hmmwriter.State
3182
+ emissions:
3183
+ probs:
3184
+ A: 0.03587185532259167
3185
+ C: 0.03587185532259167
3186
+ G: 0.03587185532259167
3187
+ T: 0.892384434032225
3188
+ track: nukes
3189
+ extras:
3190
+ ambiguous_char: N
3191
+ ambiguous_emission_prob: 0.25
3192
+ germline: T
3193
+ name: IGHV5-51_star_01_210
3194
+ transitions:
3195
+ IGHV5-51_star_01_211: 1.0
3196
+ - !!python/object:python.hmmwriter.State
3197
+ emissions:
3198
+ probs:
3199
+ A: 0.03587185532259167
3200
+ C: 0.892384434032225
3201
+ G: 0.03587185532259167
3202
+ T: 0.03587185532259167
3203
+ track: nukes
3204
+ extras:
3205
+ ambiguous_char: N
3206
+ ambiguous_emission_prob: 0.25
3207
+ germline: C
3208
+ name: IGHV5-51_star_01_211
3209
+ transitions:
3210
+ IGHV5-51_star_01_212: 1.0
3211
+ - !!python/object:python.hmmwriter.State
3212
+ emissions:
3213
+ probs:
3214
+ A: 0.88591490147445
3215
+ C: 0.038028366175183334
3216
+ G: 0.038028366175183334
3217
+ T: 0.038028366175183334
3218
+ track: nukes
3219
+ extras:
3220
+ ambiguous_char: N
3221
+ ambiguous_emission_prob: 0.25
3222
+ germline: A
3223
+ name: IGHV5-51_star_01_212
3224
+ transitions:
3225
+ IGHV5-51_star_01_213: 1.0
3226
+ - !!python/object:python.hmmwriter.State
3227
+ emissions:
3228
+ probs:
3229
+ A: 0.038028366175183334
3230
+ C: 0.038028366175183334
3231
+ G: 0.88591490147445
3232
+ T: 0.038028366175183334
3233
+ track: nukes
3234
+ extras:
3235
+ ambiguous_char: N
3236
+ ambiguous_emission_prob: 0.25
3237
+ germline: G
3238
+ name: IGHV5-51_star_01_213
3239
+ transitions:
3240
+ IGHV5-51_star_01_214: 1.0
3241
+ - !!python/object:python.hmmwriter.State
3242
+ emissions:
3243
+ probs:
3244
+ A: 0.041666666666666664
3245
+ C: 0.875
3246
+ G: 0.041666666666666664
3247
+ T: 0.041666666666666664
3248
+ track: nukes
3249
+ extras:
3250
+ ambiguous_char: N
3251
+ ambiguous_emission_prob: 0.25
3252
+ germline: C
3253
+ name: IGHV5-51_star_01_214
3254
+ transitions:
3255
+ IGHV5-51_star_01_215: 1.0
3256
+ - !!python/object:python.hmmwriter.State
3257
+ emissions:
3258
+ probs:
3259
+ A: 0.038028366175183334
3260
+ C: 0.88591490147445
3261
+ G: 0.038028366175183334
3262
+ T: 0.038028366175183334
3263
+ track: nukes
3264
+ extras:
3265
+ ambiguous_char: N
3266
+ ambiguous_emission_prob: 0.25
3267
+ germline: C
3268
+ name: IGHV5-51_star_01_215
3269
+ transitions:
3270
+ IGHV5-51_star_01_216: 1.0
3271
+ - !!python/object:python.hmmwriter.State
3272
+ emissions:
3273
+ probs:
3274
+ A: 0.038028366175183334
3275
+ C: 0.038028366175183334
3276
+ G: 0.88591490147445
3277
+ T: 0.038028366175183334
3278
+ track: nukes
3279
+ extras:
3280
+ ambiguous_char: N
3281
+ ambiguous_emission_prob: 0.25
3282
+ germline: G
3283
+ name: IGHV5-51_star_01_216
3284
+ transitions:
3285
+ IGHV5-51_star_01_217: 1.0
3286
+ - !!python/object:python.hmmwriter.State
3287
+ emissions:
3288
+ probs:
3289
+ A: 0.88591490147445
3290
+ C: 0.038028366175183334
3291
+ G: 0.038028366175183334
3292
+ T: 0.038028366175183334
3293
+ track: nukes
3294
+ extras:
3295
+ ambiguous_char: N
3296
+ ambiguous_emission_prob: 0.25
3297
+ germline: A
3298
+ name: IGHV5-51_star_01_217
3299
+ transitions:
3300
+ IGHV5-51_star_01_218: 1.0
3301
+ - !!python/object:python.hmmwriter.State
3302
+ emissions:
3303
+ probs:
3304
+ A: 0.038028366175183334
3305
+ C: 0.88591490147445
3306
+ G: 0.038028366175183334
3307
+ T: 0.038028366175183334
3308
+ track: nukes
3309
+ extras:
3310
+ ambiguous_char: N
3311
+ ambiguous_emission_prob: 0.25
3312
+ germline: C
3313
+ name: IGHV5-51_star_01_218
3314
+ transitions:
3315
+ IGHV5-51_star_01_219: 1.0
3316
+ - !!python/object:python.hmmwriter.State
3317
+ emissions:
3318
+ probs:
3319
+ A: 0.88591490147445
3320
+ C: 0.038028366175183334
3321
+ G: 0.038028366175183334
3322
+ T: 0.038028366175183334
3323
+ track: nukes
3324
+ extras:
3325
+ ambiguous_char: N
3326
+ ambiguous_emission_prob: 0.25
3327
+ germline: A
3328
+ name: IGHV5-51_star_01_219
3329
+ transitions:
3330
+ IGHV5-51_star_01_220: 1.0
3331
+ - !!python/object:python.hmmwriter.State
3332
+ emissions:
3333
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3334
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3335
+ C: 0.038028366175183334
3336
+ G: 0.038028366175183334
3337
+ T: 0.038028366175183334
3338
+ track: nukes
3339
+ extras:
3340
+ ambiguous_char: N
3341
+ ambiguous_emission_prob: 0.25
3342
+ germline: A
3343
+ name: IGHV5-51_star_01_220
3344
+ transitions:
3345
+ IGHV5-51_star_01_221: 1.0
3346
+ - !!python/object:python.hmmwriter.State
3347
+ emissions:
3348
+ probs:
3349
+ A: 0.041666666666666664
3350
+ C: 0.041666666666666664
3351
+ G: 0.875
3352
+ T: 0.041666666666666664
3353
+ track: nukes
3354
+ extras:
3355
+ ambiguous_char: N
3356
+ ambiguous_emission_prob: 0.25
3357
+ germline: G
3358
+ name: IGHV5-51_star_01_221
3359
+ transitions:
3360
+ IGHV5-51_star_01_222: 1.0
3361
+ - !!python/object:python.hmmwriter.State
3362
+ emissions:
3363
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3364
+ A: 0.038028366175183334
3365
+ C: 0.038028366175183334
3366
+ G: 0.038028366175183334
3367
+ T: 0.88591490147445
3368
+ track: nukes
3369
+ extras:
3370
+ ambiguous_char: N
3371
+ ambiguous_emission_prob: 0.25
3372
+ germline: T
3373
+ name: IGHV5-51_star_01_222
3374
+ transitions:
3375
+ IGHV5-51_star_01_223: 1.0
3376
+ - !!python/object:python.hmmwriter.State
3377
+ emissions:
3378
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3379
+ A: 0.038028366175183334
3380
+ C: 0.88591490147445
3381
+ G: 0.038028366175183334
3382
+ T: 0.038028366175183334
3383
+ track: nukes
3384
+ extras:
3385
+ ambiguous_char: N
3386
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3387
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3388
+ name: IGHV5-51_star_01_223
3389
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3390
+ IGHV5-51_star_01_224: 1.0
3391
+ - !!python/object:python.hmmwriter.State
3392
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3393
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3394
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3395
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3396
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3397
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3398
+ track: nukes
3399
+ extras:
3400
+ ambiguous_char: N
3401
+ ambiguous_emission_prob: 0.25
3402
+ germline: C
3403
+ name: IGHV5-51_star_01_224
3404
+ transitions:
3405
+ IGHV5-51_star_01_225: 1.0
3406
+ - !!python/object:python.hmmwriter.State
3407
+ emissions:
3408
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3409
+ A: 0.8834701423557
3410
+ C: 0.03884328588143333
3411
+ G: 0.03884328588143333
3412
+ T: 0.03884328588143333
3413
+ track: nukes
3414
+ extras:
3415
+ ambiguous_char: N
3416
+ ambiguous_emission_prob: 0.25
3417
+ germline: A
3418
+ name: IGHV5-51_star_01_225
3419
+ transitions:
3420
+ IGHV5-51_star_01_226: 1.0
3421
+ - !!python/object:python.hmmwriter.State
3422
+ emissions:
3423
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3424
+ A: 0.03884328588143333
3425
+ C: 0.03884328588143333
3426
+ G: 0.03884328588143333
3427
+ T: 0.8834701423557
3428
+ track: nukes
3429
+ extras:
3430
+ ambiguous_char: N
3431
+ ambiguous_emission_prob: 0.25
3432
+ germline: T
3433
+ name: IGHV5-51_star_01_226
3434
+ transitions:
3435
+ IGHV5-51_star_01_227: 1.0
3436
+ - !!python/object:python.hmmwriter.State
3437
+ emissions:
3438
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3439
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3440
+ C: 0.8834701423557
3441
+ G: 0.03884328588143333
3442
+ T: 0.03884328588143333
3443
+ track: nukes
3444
+ extras:
3445
+ ambiguous_char: N
3446
+ ambiguous_emission_prob: 0.25
3447
+ germline: C
3448
+ name: IGHV5-51_star_01_227
3449
+ transitions:
3450
+ IGHV5-51_star_01_228: 1.0
3451
+ - !!python/object:python.hmmwriter.State
3452
+ emissions:
3453
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3454
+ A: 0.8834701423557
3455
+ C: 0.03884328588143333
3456
+ G: 0.03884328588143333
3457
+ T: 0.03884328588143333
3458
+ track: nukes
3459
+ extras:
3460
+ ambiguous_char: N
3461
+ ambiguous_emission_prob: 0.25
3462
+ germline: A
3463
+ name: IGHV5-51_star_01_228
3464
+ transitions:
3465
+ IGHV5-51_star_01_229: 1.0
3466
+ - !!python/object:python.hmmwriter.State
3467
+ emissions:
3468
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3469
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3470
+ C: 0.045
3471
+ G: 0.865
3472
+ T: 0.045
3473
+ track: nukes
3474
+ extras:
3475
+ ambiguous_char: N
3476
+ ambiguous_emission_prob: 0.25
3477
+ germline: G
3478
+ name: IGHV5-51_star_01_229
3479
+ transitions:
3480
+ IGHV5-51_star_01_230: 1.0
3481
+ - !!python/object:python.hmmwriter.State
3482
+ emissions:
3483
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3484
+ A: 0.03884328588143333
3485
+ C: 0.8834701423557
3486
+ G: 0.03884328588143333
3487
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3488
+ track: nukes
3489
+ extras:
3490
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3491
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3492
+ germline: C
3493
+ name: IGHV5-51_star_01_230
3494
+ transitions:
3495
+ IGHV5-51_star_01_231: 1.0
3496
+ - !!python/object:python.hmmwriter.State
3497
+ emissions:
3498
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3499
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3500
+ C: 0.03884328588143333
3501
+ G: 0.03884328588143333
3502
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3503
+ track: nukes
3504
+ extras:
3505
+ ambiguous_char: N
3506
+ ambiguous_emission_prob: 0.25
3507
+ germline: A
3508
+ name: IGHV5-51_star_01_231
3509
+ transitions:
3510
+ IGHV5-51_star_01_232: 1.0
3511
+ - !!python/object:python.hmmwriter.State
3512
+ emissions:
3513
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3514
+ A: 0.03884328588143333
3515
+ C: 0.8834701423557
3516
+ G: 0.03884328588143333
3517
+ T: 0.03884328588143333
3518
+ track: nukes
3519
+ extras:
3520
+ ambiguous_char: N
3521
+ ambiguous_emission_prob: 0.25
3522
+ germline: C
3523
+ name: IGHV5-51_star_01_232
3524
+ transitions:
3525
+ IGHV5-51_star_01_233: 1.0
3526
+ - !!python/object:python.hmmwriter.State
3527
+ emissions:
3528
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3529
+ A: 0.03884328588143333
3530
+ C: 0.8834701423557
3531
+ G: 0.03884328588143333
3532
+ T: 0.03884328588143333
3533
+ track: nukes
3534
+ extras:
3535
+ ambiguous_char: N
3536
+ ambiguous_emission_prob: 0.25
3537
+ germline: C
3538
+ name: IGHV5-51_star_01_233
3539
+ transitions:
3540
+ IGHV5-51_star_01_234: 1.0
3541
+ - !!python/object:python.hmmwriter.State
3542
+ emissions:
3543
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3544
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3545
+ C: 0.03884328588143333
3546
+ G: 0.8834701423557
3547
+ T: 0.03884328588143333
3548
+ track: nukes
3549
+ extras:
3550
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3551
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3552
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3553
+ name: IGHV5-51_star_01_234
3554
+ transitions:
3555
+ IGHV5-51_star_01_235: 1.0
3556
+ - !!python/object:python.hmmwriter.State
3557
+ emissions:
3558
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3559
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3560
+ C: 0.8834701423557
3561
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3562
+ T: 0.03884328588143333
3563
+ track: nukes
3564
+ extras:
3565
+ ambiguous_char: N
3566
+ ambiguous_emission_prob: 0.25
3567
+ germline: C
3568
+ name: IGHV5-51_star_01_235
3569
+ transitions:
3570
+ IGHV5-51_star_01_236: 1.0
3571
+ - !!python/object:python.hmmwriter.State
3572
+ emissions:
3573
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3574
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3575
+ C: 0.8834701423557
3576
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3577
+ T: 0.03884328588143333
3578
+ track: nukes
3579
+ extras:
3580
+ ambiguous_char: N
3581
+ ambiguous_emission_prob: 0.25
3582
+ germline: C
3583
+ name: IGHV5-51_star_01_236
3584
+ transitions:
3585
+ IGHV5-51_star_01_237: 1.0
3586
+ - !!python/object:python.hmmwriter.State
3587
+ emissions:
3588
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3589
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3590
+ C: 0.03884328588143333
3591
+ G: 0.03884328588143333
3592
+ T: 0.8834701423557
3593
+ track: nukes
3594
+ extras:
3595
+ ambiguous_char: N
3596
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3597
+ germline: T
3598
+ name: IGHV5-51_star_01_237
3599
+ transitions:
3600
+ IGHV5-51_star_01_238: 1.0
3601
+ - !!python/object:python.hmmwriter.State
3602
+ emissions:
3603
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3604
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3605
+ C: 0.03884328588143333
3606
+ G: 0.03884328588143333
3607
+ T: 0.03884328588143333
3608
+ track: nukes
3609
+ extras:
3610
+ ambiguous_char: N
3611
+ ambiguous_emission_prob: 0.25
3612
+ germline: A
3613
+ name: IGHV5-51_star_01_238
3614
+ transitions:
3615
+ IGHV5-51_star_01_239: 1.0
3616
+ - !!python/object:python.hmmwriter.State
3617
+ emissions:
3618
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3619
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3620
+ C: 0.8834701423557
3621
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3622
+ T: 0.03884328588143333
3623
+ track: nukes
3624
+ extras:
3625
+ ambiguous_char: N
3626
+ ambiguous_emission_prob: 0.25
3627
+ germline: C
3628
+ name: IGHV5-51_star_01_239
3629
+ transitions:
3630
+ IGHV5-51_star_01_240: 1.0
3631
+ - !!python/object:python.hmmwriter.State
3632
+ emissions:
3633
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3634
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3635
+ C: 0.8834701423557
3636
+ G: 0.03884328588143333
3637
+ T: 0.03884328588143333
3638
+ track: nukes
3639
+ extras:
3640
+ ambiguous_char: N
3641
+ ambiguous_emission_prob: 0.25
3642
+ germline: C
3643
+ name: IGHV5-51_star_01_240
3644
+ transitions:
3645
+ IGHV5-51_star_01_241: 1.0
3646
+ - !!python/object:python.hmmwriter.State
3647
+ emissions:
3648
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3649
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3650
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3651
+ G: 0.03884328588143333
3652
+ T: 0.8834701423557
3653
+ track: nukes
3654
+ extras:
3655
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3656
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3657
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3658
+ name: IGHV5-51_star_01_241
3659
+ transitions:
3660
+ IGHV5-51_star_01_242: 1.0
3661
+ - !!python/object:python.hmmwriter.State
3662
+ emissions:
3663
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3664
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3665
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3666
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3667
+ T: 0.03884328588143333
3668
+ track: nukes
3669
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3670
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3671
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3672
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3673
+ name: IGHV5-51_star_01_242
3674
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3675
+ IGHV5-51_star_01_243: 1.0
3676
+ - !!python/object:python.hmmwriter.State
3677
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3678
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3679
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3680
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3681
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3682
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3683
+ track: nukes
3684
+ extras:
3685
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3686
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3687
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3688
+ name: IGHV5-51_star_01_243
3689
+ transitions:
3690
+ IGHV5-51_star_01_244: 1.0
3691
+ - !!python/object:python.hmmwriter.State
3692
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3693
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3694
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3695
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3696
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3697
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3698
+ track: nukes
3699
+ extras:
3700
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3701
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3702
+ germline: A
3703
+ name: IGHV5-51_star_01_244
3704
+ transitions:
3705
+ IGHV5-51_star_01_245: 1.0
3706
+ - !!python/object:python.hmmwriter.State
3707
+ emissions:
3708
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3709
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3710
+ C: 0.03884328588143333
3711
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3712
+ T: 0.03884328588143333
3713
+ track: nukes
3714
+ extras:
3715
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3716
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3717
+ germline: G
3718
+ name: IGHV5-51_star_01_245
3719
+ transitions:
3720
+ IGHV5-51_star_01_246: 1.0
3721
+ - !!python/object:python.hmmwriter.State
3722
+ emissions:
3723
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3724
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3725
+ C: 0.03884328588143333
3726
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3727
+ T: 0.8834701423557
3728
+ track: nukes
3729
+ extras:
3730
+ ambiguous_char: N
3731
+ ambiguous_emission_prob: 0.25
3732
+ germline: T
3733
+ name: IGHV5-51_star_01_246
3734
+ transitions:
3735
+ IGHV5-51_star_01_247: 1.0
3736
+ - !!python/object:python.hmmwriter.State
3737
+ emissions:
3738
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3739
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3740
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3741
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3742
+ T: 0.03884328588143333
3743
+ track: nukes
3744
+ extras:
3745
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3746
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3747
+ germline: G
3748
+ name: IGHV5-51_star_01_247
3749
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3750
+ IGHV5-51_star_01_248: 1.0
3751
+ - !!python/object:python.hmmwriter.State
3752
+ emissions:
3753
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3754
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3755
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3756
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3757
+ T: 0.03884328588143333
3758
+ track: nukes
3759
+ extras:
3760
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3761
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3762
+ germline: G
3763
+ name: IGHV5-51_star_01_248
3764
+ transitions:
3765
+ IGHV5-51_star_01_249: 1.0
3766
+ - !!python/object:python.hmmwriter.State
3767
+ emissions:
3768
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3769
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3770
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3771
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3772
+ T: 0.03884328588143333
3773
+ track: nukes
3774
+ extras:
3775
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3776
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3777
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3778
+ name: IGHV5-51_star_01_249
3779
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3780
+ IGHV5-51_star_01_250: 1.0
3781
+ - !!python/object:python.hmmwriter.State
3782
+ emissions:
3783
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3784
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3785
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3786
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3787
+ T: 0.03884328588143333
3788
+ track: nukes
3789
+ extras:
3790
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3791
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3792
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3793
+ name: IGHV5-51_star_01_250
3794
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3795
+ IGHV5-51_star_01_251: 1.0
3796
+ - !!python/object:python.hmmwriter.State
3797
+ emissions:
3798
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3799
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3800
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3801
+ G: 0.03884328588143333
3802
+ T: 0.03884328588143333
3803
+ track: nukes
3804
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3805
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3806
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3807
+ germline: C
3808
+ name: IGHV5-51_star_01_251
3809
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3810
+ IGHV5-51_star_01_252: 1.0
3811
+ - !!python/object:python.hmmwriter.State
3812
+ emissions:
3813
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3814
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3815
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3816
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3817
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3818
+ track: nukes
3819
+ extras:
3820
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3821
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3822
+ germline: A
3823
+ name: IGHV5-51_star_01_252
3824
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3825
+ IGHV5-51_star_01_253: 1.0
3826
+ - !!python/object:python.hmmwriter.State
3827
+ emissions:
3828
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3829
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3830
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3831
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3832
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3833
+ track: nukes
3834
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3835
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3836
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3837
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3838
+ name: IGHV5-51_star_01_253
3839
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3840
+ IGHV5-51_star_01_254: 1.0
3841
+ - !!python/object:python.hmmwriter.State
3842
+ emissions:
3843
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3844
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3845
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3846
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3847
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3848
+ track: nukes
3849
+ extras:
3850
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3851
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3852
+ germline: C
3853
+ name: IGHV5-51_star_01_254
3854
+ transitions:
3855
+ IGHV5-51_star_01_255: 1.0
3856
+ - !!python/object:python.hmmwriter.State
3857
+ emissions:
3858
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3859
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3860
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3861
+ G: 0.045
3862
+ T: 0.045
3863
+ track: nukes
3864
+ extras:
3865
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3866
+ ambiguous_emission_prob: 0.25
3867
+ germline: C
3868
+ name: IGHV5-51_star_01_255
3869
+ transitions:
3870
+ IGHV5-51_star_01_256: 1.0
3871
+ - !!python/object:python.hmmwriter.State
3872
+ emissions:
3873
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3874
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3875
+ C: 0.03884328588143333
3876
+ G: 0.03884328588143333
3877
+ T: 0.8834701423557
3878
+ track: nukes
3879
+ extras:
3880
+ ambiguous_char: N
3881
+ ambiguous_emission_prob: 0.25
3882
+ germline: T
3883
+ name: IGHV5-51_star_01_256
3884
+ transitions:
3885
+ IGHV5-51_star_01_257: 1.0
3886
+ - !!python/object:python.hmmwriter.State
3887
+ emissions:
3888
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3889
+ A: 0.03884328588143333
3890
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3891
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3892
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3893
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3894
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3895
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3896
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3897
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3898
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3899
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3900
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3901
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3902
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3903
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3904
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3905
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3906
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3907
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3908
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3909
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3910
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3911
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3912
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3913
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3914
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3915
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3916
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3917
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3918
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3919
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3920
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3921
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3922
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3923
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3924
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3925
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3926
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3927
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3928
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3929
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3930
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3931
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3932
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3933
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3934
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3935
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3936
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3937
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3938
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3939
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3940
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3941
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3942
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3943
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3944
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3945
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3946
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3947
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3948
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3949
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3950
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3951
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3952
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3953
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3954
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3955
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3956
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3957
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3958
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3959
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3960
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3961
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3962
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3963
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3964
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3965
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3966
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3967
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3968
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3969
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3970
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3971
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3972
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3973
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3974
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3975
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3976
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3977
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3979
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3980
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3981
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3982
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3983
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3984
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3985
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3986
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3987
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3988
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3989
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3991
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3992
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3993
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3994
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3995
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3997
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3998
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4000
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4001
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4002
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4003
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4004
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4005
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4006
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4007
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4010
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4011
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4012
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4013
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4014
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4016
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4017
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4018
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4019
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4020
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4021
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4022
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4023
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4024
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4025
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4026
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4027
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4028
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4029
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4030
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4031
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4032
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4033
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4034
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4035
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4036
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4037
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4040
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4041
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4042
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4043
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4044
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4045
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4046
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4047
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4048
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4049
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4050
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4051
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4052
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4053
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4054
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4055
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4056
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4057
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4058
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4059
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4060
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4061
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4062
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4063
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4064
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4065
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4066
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4067
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4070
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4071
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4072
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4073
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4075
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4076
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4077
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4078
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4079
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4080
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4081
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4082
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4083
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4084
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4085
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4086
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4087
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4088
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4089
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4090
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4091
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4092
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4093
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4094
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4095
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4096
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4097
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4098
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4099
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4100
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4101
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4102
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4103
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4104
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4105
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4106
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4107
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4108
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4109
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4110
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4111
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4112
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4114
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4115
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4116
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4117
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4118
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4119
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4120
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4121
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4122
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4123
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4124
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4125
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4126
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4127
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4129
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4130
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4131
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4132
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4133
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4134
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4135
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4136
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4137
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4138
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4139
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4140
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4141
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4142
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4143
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4145
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4146
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4147
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4148
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4149
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4150
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4151
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4152
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4153
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4154
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4155
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4156
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4157
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4158
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4159
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4160
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4161
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4162
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4163
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4164
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4166
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4167
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4168
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4169
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4170
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4171
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4172
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4173
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4175
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4177
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4178
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4179
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4181
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4182
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4183
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4184
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4185
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4186
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4187
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4190
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4191
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4192
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4193
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4194
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4195
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4196
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4197
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4198
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4199
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4200
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4201
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4202
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4207
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4208
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4209
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4210
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4211
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4213
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4214
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4215
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4216
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4217
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4223
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4225
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4227
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4228
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4229
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4230
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4231
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4232
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4238
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4243
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4244
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4245
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4246
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4247
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4253
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4256
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4258
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4259
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4260
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4261
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4262
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4273
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4275
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4276
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4277
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4284
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4286
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4287
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4288
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4289
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4290
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4291
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4292
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4303
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4307
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4319
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4322
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4334
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4335
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4337
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4352
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4353
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4356
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4358
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4360
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4365
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4368
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4369
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4381
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4384
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4385
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4400
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4401
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4416
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4417
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4429
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4432
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4433
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+ IGHV5-51_star_01_294: 0.9090909090909091
4447
+ end: 0.09090909090909091
4448
+ - !!python/object:python.hmmwriter.State
4449
+ emissions:
4450
+ probs:
4451
+ A: 0.037143159189174525
4452
+ C: 0.8885705224324765
4453
+ G: 0.037143159189174525
4454
+ T: 0.037143159189174525
4455
+ track: nukes
4456
+ extras:
4457
+ ambiguous_char: N
4458
+ ambiguous_emission_prob: 0.25
4459
+ germline: C
4460
+ name: IGHV5-51_star_01_294
4461
+ transitions:
4462
+ IGHV5-51_star_01_295: 0.7272727272727273
4463
+ end: 0.2727272727272727
4464
+ - !!python/object:python.hmmwriter.State
4465
+ emissions:
4466
+ probs:
4467
+ A: 0.8892080699420735
4468
+ C: 0.03693064335264218
4469
+ G: 0.03693064335264218
4470
+ T: 0.03693064335264218
4471
+ track: nukes
4472
+ extras:
4473
+ ambiguous_char: N
4474
+ ambiguous_emission_prob: 0.25
4475
+ germline: A
4476
+ name: IGHV5-51_star_01_295
4477
+ transitions:
4478
+ end: 1.0
4479
+ tracks:
4480
+ nukes:
4481
+ - A
4482
+ - C
4483
+ - G
4484
+ - T