PyPI - partis-bcr - Versions diffs - 1.0.11.post1.dev1__cp312-cp312-manylinux1_x86_64.whl → 1.0.11.post1.dev7__cp312-cp312-manylinux1_x86_64.whl - Mend

partis-bcr 1.0.11.post1.dev1__cp312-cp312-manylinux1_x86_64.whl → 1.0.11.post1.dev7__cp312-cp312-manylinux1_x86_64.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

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test/new-results/test/parameters/data/sw-cache.yaml ADDED Viewed

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+ {"version-info": {"partis-yaml": 0.1, "partis-git": ""}, "germline-info": {"locus": "igh", "functionalities": {}, "seqs": {"v": {"IGHV1-18*01": "CAGGTTCAGCTGGTGCAGTCTGGAGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGTTACACCTTTACCAGCTATGGTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGATGGATCAGCGCTTACAATGGTAACACAAACTATGCACAGAAGCTCCAGGGCAGAGTCACCATGACCACAGACACATCCACGAGCACAGCCTACATGGAGCTGAGGAGCCTGAGATCTGACGACACGGCCGTGTATTACTGTGCGAGAGA", "IGHV1-2*02": "CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACCGGCTACTATATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGATGGATCAACCCTAACAGTGGTGGCACAAACTATGCACAGAAGTTTCAGGGCAGGGTCACCATGACCAGGGACACGTCCATCAGCACAGCCTACATGGAGCTGAGCAGGCTGAGATCTGACGACACGGCCGTGTATTACTGTGCGAGAGA", "IGHV1-8*03": "CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACCAGCTATGATATCAACTGGGTGCGACAGGCCACTGGACAAGGGCTTGAGTGGATGGGATGGATGAACCCTAACAGTGGTAACACAGGCTATGCACAGAAGTTCCAGGGCAGAGTCACCATTACCAGGAACACCTCCATAAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGAGG", "IGHV2-5*02": "CAGATCACCTTGAAGGAGTCTGGTCCTACGCTGGTGAAACCCACACAGACCCTCACGCTGACCTGCACCTTCTCTGGGTTCTCACTCAGCACTAGTGGAGTGGGTGTGGGCTGGATCCGTCAGCCCCCAGGAAAGGCCCTGGAGTGGCTTGCACTCATTTATTGGGATGATGATAAGCGCTACAGCCCATCTCTGAAGAGCAGGCTCACCATCACCAAGGACACCTCCAAAAACCAGGTGGTCCTTACAATGACCAACATGGACCCTGTGGACACAGCCACATATTACTGTGCACACAGAC", "IGHV2-70D*04": "CAGGTCACCTTGAAGGAGTCTGGTCCTGCGCTGGTGAAACCCACACAGACCCTCACACTGACCTGCACCTTCTCTGGGTTCTCACTCAGCACTAGTGGAATGCGTGTGAGCTGGATCCGTCAGCCCCCAGGGAAGGCCCTGGAGTGGCTTGCACGCATTGATTGGGATGATGATAAATTCTACAGCACATCTCTGAAGACCAGGCTCACCATCTCCAAGGACACCTCCAAAAACCAGGTGGTCCTTACAATGACCAACATGGACCCTGTGGACACAGCCACGTATTACTGTGCACGGATAC", "IGHV3-11*04": "CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTCAAGCCTGGAGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTGACTACTACATGAGCTGGATCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTTTCATACATTAGTAGTAGTGGTAGTACCATATACTACGCAGACTCTGTGAAGGGCCGATTCACCATCTCCAGGGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGA", "IGHV3-11*06": "CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTCAAGCCTGGAGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTGACTACTACATGAGCTGGATCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTTTCATACATTAGTAGTAGTAGTAGTTACACAAACTACGCAGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGA", "IGHV3-21*01": "GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCCTGGTCAAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATAGCATGAACTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCATCCATTAGTAGTAGTAGTAGTTACATATACTACGCAGACTCAGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGA", "IGHV3-23*01": "GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGTTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGTGCGAAAGA", "IGHV3-23*03": "GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGTTATTTATAGCGGTGGTAGTAGCACATACTATGCAGACTCCGTGAAGGGCCGGTTCACCATCTCCAGAGATAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGTGCGAAAGA", "IGHV3-30*04": "CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATGCTATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATCATATGATGGAAGTAATAAATACTACGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCTGAGGACACGGCTGTGTATTACTGTGCGAGAGA", "IGHV3-38-3*01": "GAGGTGCAGCTGGTGGAGTCTCGGGGAGTCTTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCGTCAGTAGCAATGAGATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGTCTGGAGTGGGTCTCATCCATTAGTGGTGGTAGCACATACTACGCAGACTCCAGGAAGGGCAGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGCATCTTCAAATGAACAGCCTGAGAGCTGAGGACACGGCTGTGTATTACTGTAAGAAAGA", "IGHV3-48*01": "GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATAGCATGAACTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTTTCATACATTAGTAGTAGTAGTAGTACCATATACTACGCAGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAATGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGA", "IGHV3-48*03": "GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGAGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGTTATGAAATGAACTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTTTCATACATTAGTAGTAGTGGTAGTACCATATACTACGCAGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTTTATTACTGTGCGAGAGA", "IGHV3-66*02": "GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTCCAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCGTCAGTAGCAACTACATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGTTATTTATAGCGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTTCAAATGAACAGCCTGAGAGCTGAGGACACGGCTGTGTATTACTGTGCGAGAGA", "IGHV3-69-1*02": "GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTAAAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTGACTACTACATGAACTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCATCCATTAGTAGTAGTAGTACCATATACTACGCAGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTTTATTACTGTGCGAGAGA", "IGHV3-7*05": "GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTCCAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGTAGCTATTGGATGAGCTGGGTCCGCCAGGCTCCAGGGAAAGGGCTGGAGTGGGTGGCCAACATAAAGCAAGATGGAAGTGAGAAATACTATGTGGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTGTATTACTGTGCGAGAGA", "IGHV3-9*02": "GAAGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGCAGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTCTGATGATTATGCCATGCACTGGGTCCGGCAAGCTCCAGGGAAGGGCCTGGAGTGGGTCTCAGGTATTAGTTGGAATAGTGGTAGCATAGGCTATGCGGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCCCTGTATCTGCAAATGAACAGTCTGAGAGCTGAGGACACGGCCTTGTATTACTGTGCAAAAGATA", "IGHV4-34*01": "CAGGTGCAGCTACAGCAGTGGGGCGCAGGACTGTTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCGCTGTCTATGGTGGGTCCTTCAGTGGTTACTACTGGAGCTGGATCCGCCAGCCCCCAGGGAAGGGGCTGGAGTGGATTGGGGAAATCAATCATAGTGGAAGCACCAACTACAACCCGTCCCTCAAGAGTCGAGTCACCATATCAGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCCGCGGACACGGCTGTGTATTACTGTGCGAGAGG", "IGHV4-38-2*02": "CAGGTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCACTGTCTCTGGTTACTCCATCAGCAGTGGTTACTACTGGGGCTGGATCCGGCAGCCCCCAGGGAAGGGGCTGGAGTGGATTGGGAGTATCTATCATAGTGGGAGCACCTACTACAACCCGTCCCTCAAGAGTCGAGTCACCATATCAGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCCGCAGACACGGCCGTGTATTACTGTGCGAGAGA", "IGHV4-39*09": "CAGCTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTAGTAGTTACTACTGGGGCTGGATCCGCCAGCCCCCAGGGAAGGGGCTGGAGTGGATTGGGAGTATCTATTATAGTGGGAGCACCTACTACAACCCGTCCCTCAAGAGTCGAGTCACCATATCAGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCAGCGGACACGGCCGTGTATTACTGTGCGAGAGA", "IGHV4-4*09": "CAGGTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGTAGTTACTACTGGAGCTGGATCCGGCAGCCCCCAGGGAAGGGACTGGAGTGGATTGGGTACATCTATACCAGTGGGAGCACCAACTACAACCCCTCCCTCAAGAGTCGAGTCACCATATCAGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCCGCAGACACGGCCGTGTATTACTGTGCGAGAGA", "IGHV4-61*01": "CAGGTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCGTCAGCAGTGGTAGTTACTACTGGAGCTGGATCCGGCAGCCCCCAGGGAAGGGACTGGAGTGGATTGGGTATATCTATTACAGTGGGAGCACCAACTACAACCCCTCCCTCAAGAGTCGAGTCACCATATCAGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCTGCGGACACGGCCGTGTATTACTGTGCGAGAGA", "IGHV5-51*01": "GAGGTGCAGCTGGTGCAGTCTGGAGCAGAGGTGAAAAAGCCCGGGGAGTCTCTGAAGATCTCCTGTAAGGGTTCTGGATACAGCTTTACCAGCTACTGGATCGGCTGGGTGCGCCAGATGCCCGGGAAAGGCCTGGAGTGGATGGGGATCATCTATCCTGGTGACTCTGATACCAGATACAGCCCGTCCTTCCAAGGCCAGGTCACCATCTCAGCCGACAAGTCCATCAGCACCGCCTACCTGCAGTGGAGCAGCCTGAAGGCCTCGGACACCGCCATGTATTACTGTGCGAGACA"}, "d": {"IGHD1-1*01": "GGTACAACTGGAACGAC", "IGHD1-14*01": "GGTATAACCGGAACCAC", "IGHD1-20*01": "GGTATAACTGGAACGAC", "IGHD1-26*01": "GGTATAGTGGGAGCTACTAC", "IGHD1-7*01": "GGTATAACTGGAACTAC", "IGHD2-15*01": "AGGATATTGTAGTGGTGGTAGCTGCTACTCC", "IGHD2-2*01": "AGGATATTGTAGTAGTACCAGCTGCTATGCC", "IGHD2-2*02": "AGGATATTGTAGTAGTACCAGCTGCTATACC", "IGHD2-21*01": "AGCATATTGTGGTGGTGATTGCTATTCC", "IGHD2-21*02": "AGCATATTGTGGTGGTGACTGCTATTCC", "IGHD2-8*01": "AGGATATTGTACTAATGGTGTATGCTATACC", "IGHD2-8*02": "AGGATATTGTACTGGTGGTGTATGCTATACC", "IGHD3-10*01": "GTATTACTATGGTTCGGGGAGTTATTATAAC", "IGHD3-10*03": "GTATTACTATGGTTCAGGGAGTTATTATAAC", "IGHD3-16*02": "GTATTATGATTACGTTTGGGGGAGTTATCGTTATACC", "IGHD3-16*03": "GTATTATGATTACATTTGGGGGAGTTATCGTTATACC", "IGHD3-22*01": "GTATTACTATGATAGTAGTGGTTATTACTAC", "IGHD3-3*01": "GTATTACGATTTTTGGAGTGGTTATTATACC", "IGHD3-9*01": "GTATTACGATATTTTGACTGGTTATTATAAC", "IGHD4-17*01": "TGACTACGGTGACTAC", "IGHD4-23*01": "TGACTACGGTGGTAACTCC", "IGHD4-4*01": "TGACTACAGTAACTAC", "IGHD5-12*01": "GTGGATATAGTGGCTACGATTAC", "IGHD5-18*02": "GTGAATATAGTGGCTACGATTAC", "IGHD5-24*01": "GTAGAGATGGCTACAATTAC", "IGHD5-5*01": "GTGGATACAGCTATGGTTAC", "IGHD6-13*01": "GGGTATAGCAGCAGCTGGTAC", "IGHD6-19*01": "GGGTATAGCAGTGGCTGGTAC", "IGHD6-25*01": "GGGTATAGCAGCGGCTAC", "IGHD6-6*01": "GAGTATAGCAGCTCGTCC", "IGHD7-27*01": "CTAACTGGGGA"}, "j": {"IGHJ1*01": "GCTGAATACTTCCAGCACTGGGGCCAGGGCACCCTGGTCACCGTCTCCTCAG", "IGHJ2*01": "CTACTGGTACTTCGATCTCTGGGGCCGTGGCACCCTGGTCACTGTCTCCTCAG", "IGHJ3*02": "TGATGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCAG", "IGHJ4*02": "ACTACTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "IGHJ5*02": "ACAACTGGTTCGACCCCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "IGHJ6*02": "ATTACTACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCAG", "IGHJ6*03": "ATTACTACTACTACTACTACATGGACGTCTGGGGCAAAGGGACCACGGTCACCGTCTCCTCAG"}}, "cyst-positions": {"IGHV2-5*02": 288, "IGHV4-34*01": 282, "IGHV1-2*02": 285, "IGHV3-21*01": 285, "IGHV3-23*03": 285, "IGHV1-18*01": 285, "IGHV4-38-2*02": 285, "IGHV3-7*05": 285, "IGHV3-69-1*02": 282, "IGHV3-11*04": 285, "IGHV3-11*06": 285, "IGHV3-30*04": 285, "IGHV2-70D*04": 288, "IGHV5-51*01": 285, "IGHV3-38-3*01": 279, "IGHV3-66*02": 282, "IGHV1-8*03": 285, "IGHV4-39*09": 288, "IGHV3-9*02": 285, "IGHV3-23*01": 285, "IGHV3-48*03": 285, "IGHV3-48*01": 285, "IGHV4-61*01": 288, "IGHV4-4*09": 282}, "tryp-positions": {"IGHJ4*02": 14, "IGHJ2*01": 19, "IGHJ3*02": 16, "IGHJ6*02": 29, "IGHJ5*02": 17, "IGHJ1*01": 18, "IGHJ6*03": 29}}, "partitions": [{"logprob": 0.0, "n_clusters": 46, "n_procs": 1, "partition": [["944860330169026868"], ["-8009227471980910973"], ["-897112141984688730"], ["-7103133300489454258"], ["8251691699452868973"], ["-2126437327330379358"], ["6731449281791440313"], ["1951.d0"], ["901.d0"], ["02-C-M_0360936"], ["1591.d28"], ["591.d0"], ["02-C-M_2188593"], ["04-A-M_3275309"], ["3213257196707376594"], ["04-A-M_4022824"], ["211.d0"], ["61.d0"], ["1491.d0"], ["2895171606369249876"], ["8520939472988791669"], ["06-B-M_2962542"], ["indel-1"], ["indel-2"], ["crap-2"], ["8851231630392144693"], ["06-B-M_0345150"], ["11.d0"], ["02-C-M_3856399"], ["02-C-M_2027377"], ["1201.d7"], ["06-B-M_3768642"], ["1.d0"], ["04-A-M_2148159"], ["6785281000938532760"], ["-4847562276697408608"], ["-9140119851721454527"], ["02-C-M_1115713"], ["1441.d0"], ["-2746509048448212099"], ["02-C-M_3281471"], ["1081.d0"], ["-991144955841202245"], ["631.d0"], ["-7829267785575297546"], ["1221.d7"]]}], "events": [{"has_shm_indels": [false], "qr_gap_seqs": [""], "gl_gap_seqs": [""], "indel_reversed_seqs": [""], "unique_ids": ["944860330169026868"], "invalid": false, "v_gene": "IGHV3-66*02", "d_gene": "IGHD6-13*01", "j_gene": "IGHJ4*02", "cdr3_length": 33, "mut_freqs": [0.14450867052023122], "n_mutations": [50], "input_seqs": ["GAGGTGTAACTGATGAAGTCTGGAGGAGGCTTGGTCCTGCGTGGGGGGTCCCTGGGACTCTCCTGTACAGCCCCTAGATTCACCGCCAATAACAACTACATGACCTTGGTCCCCCAGGCTCCATGGAAGAGGCTCGTGTGGGTTTCAGTGATTTGTAGCGGTGGTAGCACTTACTGCTCAGATTCCGTCCAGGGCTGATTCCCCATCTCCAAAGATAATTCCAAGAACATGCTGTATCTTCCAATGTACAGCCTGAGAGCTGAGGATATAGCTGTGTACTACTGTACGAGACCGTTATCAGCGACCGGTTATTGGGGCCGGGGAACCGAGGTCACCGTCTCCTCAG"], "naive_seq": "GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTCCAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCGTCAGTAGCAACTACATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGTTATTTATAGCGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTTCAAATGAACAGCCTGAGAGCTGAGGACACGGCTGTGTATTACTGTGCGAGACCGTTAGCAGCAGCTGGTTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "duplicates": [[]], "leader_seqs": [""], "c_gene_seqs": [""], "v_3p_del": 2, "d_5p_del": 5, "d_3p_del": 2, "j_5p_del": 11, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "CCGT", "dj_insertion": "", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false], "in_frames": [true], "stops": [true], "multiplicities": [3], "codon_positions": {"v": 282, "j": 312}, "k_v": {"best": 291, "min": 291, "max": 292}, "k_d": {"best": 18, "min": 8, "max": 22}, "all_matches": [{"v": {"IGHV3-66*02": {"score": 1119, "glbounds": [0, 291], "qrbounds": [0, 291]}}, "d": {"IGHD6-13*01": {"score": 38, "glbounds": [5, 19], "qrbounds": [295, 309]}, "IGHD6-19*01": {"score": 38, "glbounds": [5, 19], "qrbounds": [295, 309]}, "IGHD6-25*01": {"score": 34, "glbounds": [5, 15], "qrbounds": [295, 305]}, "IGHD3-16*03": {"score": 30, "glbounds": [23, 29], "qrbounds": [293, 299]}, "IGHD3-16*02": {"score": 30, "glbounds": [23, 29], "qrbounds": [293, 299]}}, "j": {"IGHJ4*02": {"score": 153, "glbounds": [11, 48], "qrbounds": [309, 346]}, "IGHJ5*02": {"score": 146, "glbounds": [17, 51], "qrbounds": [312, 346]}}}], "padlefts": [""], "padrights": [""]}, {"has_shm_indels": [false], "qr_gap_seqs": [""], "gl_gap_seqs": [""], "indel_reversed_seqs": [""], "unique_ids": ["-8009227471980910973"], "invalid": false, "v_gene": "IGHV3-66*02", "d_gene": "IGHD6-13*01", "j_gene": "IGHJ4*02", "cdr3_length": 33, "mut_freqs": [0.09248554913294797], "n_mutations": [32], "input_seqs": ["GAGGTGCAACTGGTGGAGTTTGGTGGAGCCTTGGTCCTGCGTAGGGGGTCCCTGCGACTCTCCTGTGCAGCCTCTCGATTCACCGTTGGTAGCAACTACATCAGCTGGGTCCGCCAGGCTCCACGGAAGGGGCTGGATTGGCTCTCAGTCATTTATAGAGGTGGTAACACATACTACGCAGATTCCTTGGAGAGCCGATTCAGCATCTCTAGAGACAATTCGAAGAACACGCTGTATCTTCAAATGATCAGCCTGAGAGCTAAGGACACAGCTGTGTATTACTGTGCGAGACCTATAACAGCAGCCGTCTAATGGGGCCAGGGATCCCTGGTCACCGTCTCCTCAG"], "naive_seq": "GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTCCAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCGTCAGTAGCAACTACATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGTTATTTATAGCGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTTCAAATGAACAGCCTGAGAGCTGAGGACACGGCTGTGTATTACTGTGCGAGACCTATAGCAGCAGCCGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "duplicates": [[]], "leader_seqs": [""], "c_gene_seqs": [""], "v_3p_del": 2, "d_5p_del": 3, "d_3p_del": 6, "j_5p_del": 8, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "CC", "dj_insertion": "C", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false], "in_frames": [true], "stops": [true], "multiplicities": [2], "codon_positions": {"v": 282, "j": 312}, "k_v": {"best": 291, "min": 291, "max": 292}, "k_d": {"best": 14, "min": 11, "max": 22}, "all_matches": [{"v": {"IGHV3-66*02": {"score": 1231, "glbounds": [0, 291], "qrbounds": [0, 291]}}, "d": {"IGHD6-13*01": {"score": 52, "glbounds": [3, 15], "qrbounds": [293, 305]}, "IGHD6-25*01": {"score": 44, "glbounds": [3, 15], "qrbounds": [293, 305]}, "IGHD1-14*01": {"score": 41, "glbounds": [2, 15], "qrbounds": [293, 306]}, "IGHD6-6*01": {"score": 37, "glbounds": [3, 12], "qrbounds": [293, 302]}, "IGHD1-20*01": {"score": 36, "glbounds": [2, 14], "qrbounds": [293, 305]}}, "j": {"IGHJ4*02": {"score": 176, "glbounds": [8, 48], "qrbounds": [306, 346]}, "IGHJ5*02": {"score": 165, "glbounds": [10, 51], "qrbounds": [305, 346]}}}], "padlefts": [""], "padrights": [""]}, {"has_shm_indels": [false], "qr_gap_seqs": [""], "gl_gap_seqs": [""], "indel_reversed_seqs": [""], "unique_ids": ["-897112141984688730"], "invalid": false, "v_gene": "IGHV3-66*02", "d_gene": "IGHD6-13*01", "j_gene": "IGHJ4*02", "cdr3_length": 33, "mut_freqs": [0.10115606936416185], "n_mutations": [35], "input_seqs": ["GAGGCGCAACTGGTGGAGTTTGGTGGAGCCTTGGTGCTGCGTAGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTCGATTCACCGTTGGTAGCAACTACATGAGCTGGGTCCGCCAGACTCCACGGAAGGGGCTGGATTGGCTCTCAGTTATTTATGGCGGTGGTAACACATACTACGCAGATTCCTTGAAGGGCCGATTCACCATCTCTACAGACAATTCCAAGAACACGTTGTATCTTCAAATGATCAGCCTGAGACTTAACGACACGGCTGTGTATTACTGTGCGAGACCTAAAACAGCAGCCGTCAAATGGGGCCTGGGATCCCTGGTCACCGTCTCCTCAG"], "naive_seq": "GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTCCAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCGTCAGTAGCAACTACATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGTTATTTATAGCGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTTCAAATGAACAGCCTGAGAGCTGAGGACACGGCTGTGTATTACTGTGCGAGACCTATAGCAGCAGCCGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "duplicates": [[]], "leader_seqs": [""], "c_gene_seqs": [""], "v_3p_del": 2, "d_5p_del": 3, "d_3p_del": 6, "j_5p_del": 8, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "CC", "dj_insertion": "C", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false], "in_frames": [true], "stops": [false], "codon_positions": {"v": 282, "j": 312}, "k_v": {"best": 291, "min": 291, "max": 292}, "k_d": {"best": 14, "min": 14, "max": 22}, "all_matches": [{"v": {"IGHV3-66*02": {"score": 1231, "glbounds": [0, 291], "qrbounds": [0, 291]}}, "d": {"IGHD6-13*01": {"score": 44, "glbounds": [3, 15], "qrbounds": [293, 305]}, "IGHD6-25*01": {"score": 36, 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[false], "qr_gap_seqs": [""], "gl_gap_seqs": [""], "indel_reversed_seqs": [""], "unique_ids": ["-2126437327330379358"], "invalid": false, "v_gene": "IGHV1-18*01", "d_gene": "IGHD3-16*03", "j_gene": "IGHJ2*01", "cdr3_length": 45, "mut_freqs": [0.5623268698060941], "n_mutations": [203], "input_seqs": ["CCTCATCTACTAACTCCCTGCCTTAGGTTGGTGTTGTATGTGTGGAAAAATCATCTGGTTTTCTGCCTGTCTCGCGGTCGTTAGACCATTCGTTCTTGTTGCTGCAACTGCTTGCTTTTGCCCCTAGGCACGCGGGCAGGTAGGCTTCAAGACCTTTATTCCAATCCTAGCTCGGACTTTATCTCTTTCTACTCCCTAGTGCATGTCACGTCAGGTGTGTCGTTTCCGGGATAACCCCGACTGATTCTCCTCTCTGTTTGATCTTTTGACTAGGGGCTCTGTACCTGTGCGATAGATAGTTACCGGCCCGCATGGTGCTTCCGCATGTGGGGACGGGGGGCCCTGGTCGCTGTCTCCCCAG"], "naive_seq": "CAGGTTCAGCTGGTGCAGTCTGGAGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGTTACACCTTTACCAGCTATGGTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGATGGATCAGCGCTTACAATGGTAACACAAACTATGCACAGAAGCTCCAGGGCAGAGTCACCATGACCACAGACACATCCACGAGCACAGCCTACATGGAGCTGAGGAGCCTGAGATCTGACGACACGGCCGTGTATTACTGTGCGAGAGATAGTTATCGGCCCGCATGGTACTTCGATCTCTGGGGCCGTGGCACCCTGGTCACTGTCTCCTCAG", "duplicates": [[]], "leader_seqs": ["TCA"], "c_gene_seqs": [""], "v_3p_del": 0, "d_5p_del": 22, "d_3p_del": 7, "j_5p_del": 4, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "T", "dj_insertion": "GCCCGCA", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false], "in_frames": [true], "stops": [true], "codon_positions": {"v": 285, "j": 327}, "k_v": {"best": 296, "min": 292, "max": 297}, "k_d": {"best": 9, "min": 6, "max": 21}, "all_matches": [{"v": {"IGHV1-18*01": {"score": 55, "glbounds": [0, 296], "qrbounds": [0, 296]}, "IGHV1-2*02": {"score": 55, "glbounds": [0, 296], "qrbounds": [0, 296]}, "IGHV4-38-2*02": 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["CAGGTACGTTTATCACAATTTGGGCCCTAGATCAAGAGGCCTGGGACGTCAGTGGTTGTCTCCTGCGAGACTTCTGAATAAACCTTTATTGACCGCTTTATACAATGGTTTCGACAGGCCCCAGGGCGATCCCTTGAGTGGATGGGATGGATCAATCCTGATAGCGGTGGAATTAACTTTCCATTGACCTTGCGGGGCACCATTGCCATGATCGCCGACACGGCTGTGAACACAGCTTATATGGTACTGAGTAGCTTGAGCTCTGACGACACGGCCCCCTACTACTGTGTGGGAGCCTCACGTTTGATCCCGAGTGGAGGGTTTGGTTTTATAACCACTTGCTACTATTGGTTTTTTGCTCCCTGGGGCCGCGGGCCCCTGGTCACCGTCTCCTCAG"], "naive_seq": "CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACCGGCTACTATATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGATGGATCAACCCTAACAGTGGTGGCACAAACTATGCACAGAAGTTTCAGGGCAGGGTCACCATGACCAGGGACACGTCCATCAGCACAGCCTACATGGAGCTGAGCAGGCTGAGATCTGACGACACGGCCGTGTATTACTGTGCGAGAGCCTCACGTATGATTACGTTTGGGGGAGTTATCGTTATACCCACTTGCTACTACTGGTACTTCGATCTCTGGGGCCGTGGCACCCTGGTCACTGTCTCCTCAG", "duplicates": [[]], "leader_seqs": [""], "c_gene_seqs": [""], "v_3p_del": 1, "d_5p_del": 4, "d_3p_del": 0, "j_5p_del": 0, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "CCTCACG", 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{"has_shm_indels": [false], "qr_gap_seqs": [""], "gl_gap_seqs": [""], "indel_reversed_seqs": [""], "unique_ids": ["2895171606369249876"], "invalid": false, "v_gene": "IGHV3-66*02", "d_gene": "IGHD1-20*01", "j_gene": "IGHJ4*02", "cdr3_length": 39, "mut_freqs": [0.03409090909090909], "n_mutations": [12], "input_seqs": ["GAGGTGCAGCTGGTGGAGTCTGGAGGAGGCTTGATCCAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGGTTCACCTTCAGTAGCCACTACATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGTTATTTATAGCTGCGGTAGCACATACTACGCAGACTCCATGAAGGGCCGATTCACCATCTCCAAAGACAATTCCAAGAACACGCTGTATCTTCAAATGAACAGGTTGAGACCTGAGGACACGGCTGTGTATTACTGTGCGAGAAATACGATAACTGCCTGATACGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG"], "naive_seq": "GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTCCAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCGTCAGTAGCAACTACATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGTTATTTATAGCGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTTCAAATGAACAGCCTGAGAGCTGAGGACACGGCTGTGTATTACTGTGCGAGAAATACGATAACTGCCTGATACGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "duplicates": [[]], "leader_seqs": [""], "c_gene_seqs": [""], "v_3p_del": 2, "d_5p_del": 3, "d_3p_del": 7, "j_5p_del": 8, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "AATACG", "dj_insertion": "CCTGATAC", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false], "in_frames": [true], "stops": [true], "codon_positions": {"v": 282, "j": 318}, "k_v": {"best": 291, "min": 291, "max": 292}, "k_d": {"best": 13, "min": 9, "max": 22}, "all_matches": [{"v": {"IGHV3-66*02": {"score": 1335, "glbounds": [0, 291], "qrbounds": [0, 291]}}, "d": {"IGHD1-20*01": {"score": 35, "glbounds": [3, 10], "qrbounds": [297, 304]}, "IGHD1-7*01": {"score": 35, "glbounds": [3, 10], "qrbounds": [297, 304]}, "IGHD5-18*02": {"score": 35, "glbounds": [14, 23], "qrbounds": [293, 302]}, "IGHD5-12*01": {"score": 35, "glbounds": [14, 23], "qrbounds": [293, 302]}, "IGHD3-9*01": {"score": 35, "glbounds": [4, 11], "qrbounds": [293, 300]}}, "j": {"IGHJ4*02": {"score": 200, "glbounds": [8, 48], "qrbounds": [312, 352]}, "IGHJ5*02": {"score": 195, "glbounds": [4, 51], "qrbounds": [305, 352]}}}], "padlefts": [""], "padrights": [""]}, {"has_shm_indels": [false], "qr_gap_seqs": [""], "gl_gap_seqs": [""], "indel_reversed_seqs": [""], "unique_ids": ["8520939472988791669"], "invalid": false, "v_gene": "IGHV1-2*02", "d_gene": "IGHD2-8*01", "j_gene": "IGHJ1*01", "cdr3_length": 54, "mut_freqs": [0.2945945945945946], "n_mutations": [109], "input_seqs": ["CAAGTGCGACTGATACAGTCTGGGTCTCAACTGCAGAAGCCTGGGGCCTCACTGACTCTATCCTGTTTAGCTTCCGGATATGCCTTCGTCCGATATTGTGTTGATTGGGTTCGACAGTGACCTGGGTCGTTATCTGACTGGATGGGCTGGCTCAATCCTAGCGGTGGTGGCGTAATCTAGACAAGGAATTTCCCGGGCAGATTCACTGTGTTACGTGACAAGATCCTCAGTACACTATATGTCGATGTGGGTAGTCTGATATCTGACGACACGGCCGTTTATTATTGTGTGAGGCAAGAATTTTGTAGTTACTGTGTTCTCTACACCCACCTGTACTGGGGACAGGGGATTCTGGTCTTCGTCTCTTCAG"], "naive_seq": "CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACCGGCTACTATATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGATGGATCAACCCTAACAGTGGTGGCACAAACTATGCACAGAAGTTTCAGGGCAGGGTCACCATGACCAGGGACACGTCCATCAGCACAGCCTACATGGAGCTGAGCAGGCTGAGATCTGACGACACGGCCGTGTATTACTGTGCGAGGCAAGGATATTGTACTAATGGTGTATGCTATACCCACCAGCACTGGGGCCAGGGCACCCTGGTCACCGTCTCCTCAG", "duplicates": [[]], "leader_seqs": [""], "c_gene_seqs": [""], "v_3p_del": 3, "d_5p_del": 0, "d_3p_del": 0, "j_5p_del": 11, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "GCA", "dj_insertion": "CA", "fv_insertion": "", "jf_insertion": "", 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"gl_gap_seqs": ["GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTCCAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCGTCAGTAGCAACTACATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGTTATTTATAGCGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTTCAAATGAACAGCCTGAGAGCTGAGGACACGGCTGTGTATTACTGTGCGAGAAATACGATAACTGCCTGATACGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG"], "indel_reversed_seqs": ["GAGGTGCAGCTGGTGGAGTCTGGAGGAGGCTTGATCCAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGGTTCACCTTCAGTAGCCACTACATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGTTATTTATAGCTGCGGTAGCACATACTACGCAGACTCCATGAAGGGCCGATTCACCATCTCCAAAGACAATTCCAAGAACACGCTGTATCTTCAAATGAACAGGTTGAGACCTGAGGACACGGCTGTGTATTACTGTGCGAGAAATACGATAACTGCCTGATACGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG"], "unique_ids": ["indel-1"], "invalid": false, "v_gene": "IGHV3-66*02", "d_gene": "IGHD1-20*01", "j_gene": "IGHJ4*02", "cdr3_length": 39, "mut_freqs": [0.03409090909090909], "n_mutations": [12], "input_seqs": ["GAGGTGCAGCTGGTGGAGTCTGGAGGAGGCTTGATCCAGCCTGGGGGGTCCCTGAGACTGTGCAGCCTCTGGGTTCACCTTCAGTAGCCACTACATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGTTATTTATAGCTGCGGTAGCACATACTACGCAGACTCCATGAAGGGCCGATTCACCATCTCCAAAGACAATTCCAAGAACACGCTGTATCTTCAAATGAACAGGTTGAGACCTGAGGACACGGCTGTGTATTACTGTGCGAGAAATACGATAACTGCCTGATACGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG"], "naive_seq": "GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTCCAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCGTCAGTAGCAACTACATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGTTATTTATAGCGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTTCAAATGAACAGCCTGAGAGCTGAGGACACGGCTGTGTATTACTGTGCGAGAAATACGATAACTGCCTGATACGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "duplicates": [[]], "leader_seqs": [""], "c_gene_seqs": [""], "v_3p_del": 2, "d_5p_del": 3, "d_3p_del": 7, "j_5p_del": 8, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "AATACG", "dj_insertion": "CCTGATAC", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false], "in_frames": [false], "stops": [true], "codon_positions": {"v": 282, "j": 318}, "k_v": {"best": 291, "min": 291, "max": 292}, "k_d": {"best": 13, "min": 9, "max": 22}, "all_matches": [{"v": {"IGHV3-66*02": {"score": 1335, "glbounds": [0, 291], "qrbounds": [0, 291]}}, "d": {"IGHD1-20*01": {"score": 35, "glbounds": [3, 10], "qrbounds": [297, 304]}, "IGHD1-7*01": {"score": 35, "glbounds": [3, 10], "qrbounds": [297, 304]}, "IGHD5-18*02": {"score": 35, "glbounds": [14, 23], "qrbounds": [293, 302]}, "IGHD5-12*01": {"score": 35, "glbounds": [14, 23], "qrbounds": [293, 302]}, "IGHD3-9*01": {"score": 35, "glbounds": [4, 11], "qrbounds": [293, 300]}}, "j": {"IGHJ4*02": {"score": 200, "glbounds": [8, 48], "qrbounds": [312, 352]}, "IGHJ5*02": {"score": 195, "glbounds": [4, 51], "qrbounds": [305, 352]}}}], "padlefts": [""], "padrights": [""]}, {"has_shm_indels": [true], "qr_gap_seqs": ["CAAGTGCGACTGATACAGTCTGGGTCTCAACTGCAGAAGCCTGGGGCCTCACTGACTCTATCCTGTTTAGCTTCCGGATATGCCTTCGTCCGATATTGTGGGGGGTTGATTGGGTTCGACAGTGACCTGGGTCGTTATCTGACTGGATGGGCTGGCTCAATCCTAGCGGTGGTGGCGTAATCTAGACAAGGAATTTCCCGGGCAGATTCACTGTGTTACGTGACAAGATCCTCAGTACACTATATGTCGATGTGGGTAGTCTGATATCTGACGACACGGCCGTTTATTATTGTGTGAGGCAAGAATTTTGTAGTTACTGTGTTCTCTACACCCACCTGTACTGGGGACAGGGGATTCTGGTCTTCGTCTCTTCAG"], "gl_gap_seqs": ["CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACCGGCTACTAT.....ATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGATGGATCAACCCTAACAGTGGTGGCACAAACTATGCACAGAAGTTTCAGGGCAGGGTCACCATGACCAGGGACACGTCCATCAGCACAGCCTACATGGAGCTGAGCAGGCTGAGATCTGACGACACGGCCGTGTATTACTGTGCGAGGCAAGGATATTGTACTAATGGTGTATGCTATACCCACCAGCACTGGGGCCAGGGCACCCTGGTCACCGTCTCCTCAG"], "indel_reversed_seqs": ["CAAGTGCGACTGATACAGTCTGGGTCTCAACTGCAGAAGCCTGGGGCCTCACTGACTCTATCCTGTTTAGCTTCCGGATATGCCTTCGTCCGATATTGTGTTGATTGGGTTCGACAGTGACCTGGGTCGTTATCTGACTGGATGGGCTGGCTCAATCCTAGCGGTGGTGGCGTAATCTAGACAAGGAATTTCCCGGGCAGATTCACTGTGTTACGTGACAAGATCCTCAGTACACTATATGTCGATGTGGGTAGTCTGATATCTGACGACACGGCCGTTTATTATTGTGTGAGGCAAGAATTTTGTAGTTACTGTGTTCTCTACACCCACCTGTACTGGGGACAGGGGATTCTGGTCTTCGTCTCTTCAG"], "unique_ids": ["indel-2"], "invalid": false, "v_gene": "IGHV1-2*02", "d_gene": "IGHD2-8*01", "j_gene": "IGHJ1*01", "cdr3_length": 54, "mut_freqs": [0.2945945945945946], "n_mutations": [109], "input_seqs": ["CAAGTGCGACTGATACAGTCTGGGTCTCAACTGCAGAAGCCTGGGGCCTCACTGACTCTATCCTGTTTAGCTTCCGGATATGCCTTCGTCCGATATTGTGGGGGGTTGATTGGGTTCGACAGTGACCTGGGTCGTTATCTGACTGGATGGGCTGGCTCAATCCTAGCGGTGGTGGCGTAATCTAGACAAGGAATTTCCCGGGCAGATTCACTGTGTTACGTGACAAGATCCTCAGTACACTATATGTCGATGTGGGTAGTCTGATATCTGACGACACGGCCGTTTATTATTGTGTGAGGCAAGAATTTTGTAGTTACTGTGTTCTCTACACCCACCTGTACTGGGGACAGGGGATTCTGGTCTTCGTCTCTTCAG"], "naive_seq": "CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACCGGCTACTATATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGATGGATCAACCCTAACAGTGGTGGCACAAACTATGCACAGAAGTTTCAGGGCAGGGTCACCATGACCAGGGACACGTCCATCAGCACAGCCTACATGGAGCTGAGCAGGCTGAGATCTGACGACACGGCCGTGTATTACTGTGCGAGGCAAGGATATTGTACTAATGGTGTATGCTATACCCACCAGCACTGGGGCCAGGGCACCCTGGTCACCGTCTCCTCAG", "duplicates": [[]], "leader_seqs": [""], "c_gene_seqs": [""], "v_3p_del": 3, "d_5p_del": 0, "d_3p_del": 0, "j_5p_del": 11, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "GCA", "dj_insertion": "CA", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false], "in_frames": [false], "stops": [true], "codon_positions": {"v": 285, "j": 336}, "k_v": {"best": 293, "min": 289, "max": 294}, "k_d": {"best": 34, "min": 16, "max": 46}, "all_matches": [{"v": {"IGHV1-2*02": {"score": 565, "glbounds": [0, 293], "qrbounds": [0, 293]}}, "d": {"IGHD2-8*01": {"score": 55, "glbounds": [0, 31], "qrbounds": [296, 327]}, "IGHD2-8*02": {"score": 45, "glbounds": [0, 31], "qrbounds": [296, 327]}, "IGHD2-15*01": {"score": 45, "glbounds": [0, 13], "qrbounds": [296, 309]}, "IGHD2-2*01": {"score": 45, "glbounds": [0, 13], "qrbounds": [296, 309]}, "IGHD2-2*02": {"score": 45, "glbounds": [0, 13], "qrbounds": [296, 309]}}, "j": {"IGHJ1*01": {"score": 115, "glbounds": [11, 52], "qrbounds": [329, 370]}, "IGHJ4*02": {"score": 115, "glbounds": [11, 48], "qrbounds": [333, 370]}}}], "padlefts": [""], "padrights": [""]}, {"has_shm_indels": [false], "qr_gap_seqs": [""], "gl_gap_seqs": [""], "indel_reversed_seqs": [""], "unique_ids": ["crap-2"], "invalid": false, "v_gene": "IGHV3-11*04", "d_gene": "IGHD5-5*01", "j_gene": "IGHJ3*02", "cdr3_length": 32, "mut_freqs": [0.4406779661016949], "n_mutations": [52], "input_seqs": ["GAGCCGAGGACACGGCTGTGTATTACTGTGAGCCGAGGACACGGCTGTGTATTACTGTGAGCCGAGGACACGGCTGTGTATTACTGTGAGCCGAGGACACGGCTGTGTATTACTGTGA"], "naive_seq": "CTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGCCGTGGATACGGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCAG", "duplicates": [[]], "leader_seqs": [""], "c_gene_seqs": ["GCCGAGGACACGGCTGTGTATTACTGTGAGCCGAGGACACGGCTGTGTATTACTGTGAGCCGAGGACACGGCTGTGTATTACTGTGAGCCGAGGACACGGCTGTGTATTACTGT"], "v_3p_del": 5, "d_5p_del": 0, "d_3p_del": 12, "j_5p_del": 4, "v_5p_del": 230, "j_3p_del": 0, "vd_insertion": "CC", "dj_insertion": "G", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [true], "in_frames": [false], "stops": [true], "codon_positions": {"v": 55, "j": 84}, "k_v": {"best": 61, "min": 59, "max": 62}, "k_d": {"best": 10, "min": 3, "max": 25}, "all_matches": [{"v": {"IGHV3-11*04": {"score": 164, "glbounds": [230, 291], "qrbounds": [0, 61]}, "IGHV3-11*06": {"score": 164, "glbounds": [230, 291], "qrbounds": [0, 61]}, "IGHV3-21*01": {"score": 164, "glbounds": [230, 291], "qrbounds": [0, 61]}}, "d": {"IGHD5-5*01": {"score": 24, "glbounds": [0, 8], "qrbounds": [63, 71]}, 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["CAGGTGCAGCTGGTGCAGTCTGGGTCTGAGGTGAAGACGCCTGGGGCCTCAGTGAAGCTCTCCTGCAAGGCTTCTGGATACTTCTTCACCGACTACTATATGCAGTGGGTGCGACAGGCCCTTGGACAAGAGCTTGGGTGGATGGGACGGATCAACCCTAACAGTGGTGGCATAAACTATGCACAGAAGTTTCAAGGCAGAGTCACCATGACGAGGGACATGTCCATCAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCACGTATTACTGTGCGTACGGTGTCTGGCCTTTGTTCTACTTTGACTACTGGGGCCAGGGTACCCTGGTCACCGTCTCCTCAG"], "naive_seq": "CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACCGGCTACTATATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGATGGATCAACCCTAACAGTGGTGGCACAAACTATGCACAGAAGTTTCAGGGCAGGGTCACCATGACCAGGGACACGTCCATCAGCACAGCCTACATGGAGCTGAGCAGGCTGAGATCTGACGACACGGCCGTGTATTACTGTGCGTACGGTGACTGGCCTTTGTTCTACTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "duplicates": [[]], "leader_seqs": [""], "c_gene_seqs": [""], "v_3p_del": 5, "d_5p_del": 4, "d_3p_del": 2, "j_5p_del": 1, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "", "dj_insertion": "GGCCTTTGTT", "fv_insertion": "", "jf_insertion": "", 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["06-B-M_0345150"], "invalid": false, "v_gene": "IGHV4-4*09", "d_gene": "IGHD2-15*01", "j_gene": "IGHJ6*03", "cdr3_length": 71, "mut_freqs": [0.007692307692307693], "n_mutations": [1], "input_seqs": ["TCTCCCTGAAGCTGAGCTCTGTGACCGCCGCAGACACGGCTGTGTATTACTGTGCGAGTAACCCGTATTGTAGTGGTGGTAGCTGCTACCCTACTACTACTACTACTACATGGACGTCTGGGGCAAAGGG"], "naive_seq": "TCTCCCTGAAGCTGAGCTCTGTGACCGCCGCAGACACGGCCGTGTATTACTGTGCGAGTAACCCGTATTGTAGTGGTGGTAGCTGCTACCCTACTACTACTACTACTACATGGACGTCTGGGGCAAAGGG", "duplicates": [[]], "leader_seqs": [""], "c_gene_seqs": [""], "v_3p_del": 3, "d_5p_del": 4, "d_3p_del": 3, "j_5p_del": 2, "v_5p_del": 232, "j_3p_del": 22, "vd_insertion": "TAACCCG", "dj_insertion": "CC", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false], "in_frames": [false], "stops": [false], "codon_positions": {"v": 50, "j": 118}, "k_v": {"best": 58, "min": 58, "max": 59}, "k_d": {"best": 31, "min": 30, "max": 34}, "all_matches": [{"v": {"IGHV4-4*09": {"score": 280, "glbounds": [232, 290], 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["GAGCCGAGGACACGGCCGTATATTACTGTGCCCGATCGGCCCTAGGTAGTAGAGGACTCTTCCACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG"], "naive_seq": "GAGCCGAGGACACGGCCGTATATTACTGTGCCCGATCGGCCCTAGATAGTAGTGGACTCGACCCCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "duplicates": [[]], "leader_seqs": [""], "c_gene_seqs": [""], "v_3p_del": 6, "d_5p_del": 10, "d_3p_del": 10, "j_5p_del": 9, "v_5p_del": 259, "j_3p_del": 0, "vd_insertion": "CCGATCGGCCCTA", "dj_insertion": "AC", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false], "in_frames": [true], "stops": [false], "codon_positions": {"v": 26, "j": 65}, "k_v": {"best": 31, "min": 31, "max": 36}, "k_d": {"best": 24, "min": 21, "max": 34}, "all_matches": [{"v": {"IGHV3-23*03": {"score": 155, "glbounds": [259, 290], "qrbounds": [0, 31]}, "IGHV3-23*01": {"score": 155, "glbounds": [259, 290], "qrbounds": [0, 31]}, "IGHV3-7*05": {"score": 151, "glbounds": [259, 294], "qrbounds": [0, 35]}}, "d": {"IGHD3-22*01": {"score": 39, "glbounds": [10, 21], "qrbounds": [44, 55]}, 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"glbounds": [259, 292], "qrbounds": [0, 33]}}, "d": {"IGHD6-13*01": {"score": 75, "glbounds": [1, 20], "qrbounds": [38, 57]}, "IGHD6-19*01": {"score": 55, "glbounds": [1, 20], "qrbounds": [38, 57]}, "IGHD6-25*01": {"score": 45, "glbounds": [1, 16], "qrbounds": [38, 53]}, "IGHD4-23*01": {"score": 40, "glbounds": [9, 17], "qrbounds": [52, 60]}, "IGHD7-27*01": {"score": 35, "glbounds": [1, 8], "qrbounds": [55, 62]}}, "j": {"IGHJ4*02": {"score": 205, "glbounds": [7, 48], "qrbounds": [73, 114]}, "IGHJ5*02": {"score": 180, "glbounds": [11, 51], "qrbounds": [74, 114]}}}], "padlefts": [""], "padrights": [""]}]}

test/new-results/test/parameters/simu/hmm/all-mean-mute-freqs.csv CHANGED Viewed

@@ -1,8 +1,8 @@
 bin_low_edge,contents,binlabel,error
 -0.01,0.0,,0.0
-0.0,0.0,,0.0
-0.01,0.6,,0.2449489742783178
-0.02,0.4,,0.2
+0.0,0.3888888888888889,,0.10393492741038726
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+0.02,0.1388888888888889,,0.06211299937499416
 0.03,0.0,,0.0
 0.04,0.0,,0.0
 0.05,0.0,,0.0

test/new-results/test/parameters/simu/hmm/all-mean-n-muted.csv CHANGED Viewed

@@ -1,16 +1,16 @@
 bin_low_edge,contents,binlabel,error
 -1.5,0.0,,0.0
--0.5,0.0,,0.0
-0.5,0.0,,0.0
-1.5,0.0,,0.0
-2.5,0.0,,0.0
-3.5,2.0,,1.4142135623730951
-4.5,2.0,,1.4142135623730951
-5.5,1.0,,1.0
-6.5,3.0,,1.7320508075688772
-7.5,1.0,,1.0
-8.5,1.0,,1.0
-9.5,0.0,,0.0
+-0.5,9.0,,3.0
+0.5,3.0,,1.7320508075688772
+1.5,1.0,,1.0
+2.5,1.0,,1.0
+3.5,7.0,,2.6457513110645907
+4.5,3.0,,1.7320508075688772
+5.5,5.0,,2.23606797749979
+6.5,4.0,,2.0
+7.5,2.0,,1.4142135623730951
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+9.5,1.0,,1.0
 10.5,0.0,,0.0
 11.5,0.0,,0.0
 12.5,0.0,,0.0

test/new-results/test/parameters/simu/hmm/all-probs.csv CHANGED Viewed

@@ -1,4 +1,14 @@
 v_gene,d_gene,j_gene,v_5p_del,v_3p_del,d_5p_del,d_3p_del,j_5p_del,j_3p_del,fv_insertion,vd_insertion,dj_insertion,jf_insertion,cdr3_length,count
-IGHV3-7*05,IGHD6-13*01,IGHJ6*02,0,0,7,0,17,0,0,4,19,0,63,3
-IGHV3-66*02,IGHD6-13*01,IGHJ4*02,0,2,3,6,8,0,3,2,1,0,33,6
-IGHV3-66*02,IGHD6-13*01,IGHJ4*02,0,2,4,6,8,0,3,3,1,0,33,1
+IGHV3-7*05,IGHD6-13*01,IGHJ6*02,0,0,7,0,17,0,3,4,19,0,63,1
+IGHV3-66*02,IGHD6-13*01,IGHJ4*02,0,2,3,6,8,0,6,2,1,0,33,10
+IGHV3-23*01,IGHD3-16*02,IGHJ4*02,0,0,8,0,4,0,3,0,1,0,54,2
+IGHV3-66*02,IGHD1-20*01,IGHJ4*02,0,2,3,6,8,0,6,6,7,0,39,2
+IGHV3-7*05,IGHD6-13*01,IGHJ6*02,0,0,7,0,15,0,3,4,17,0,63,1
+IGHV3-7*05,IGHD6-13*01,IGHJ6*02,0,0,9,0,17,0,3,6,19,0,63,1
+IGHV4-4*09,IGHD6-13*01,IGHJ4*02,0,3,0,6,8,0,6,10,6,0,48,1
+IGHV4-61*01,IGHD3-22*01,IGHJ1*01,0,0,0,0,3,0,0,0,0,0,60,7
+IGHV1-18*01,IGHD6-13*01,IGHJ4*02,0,0,2,5,5,0,3,9,5,0,51,7
+IGHV5-51*01,IGHD6-19*01,IGHJ4*02,0,1,0,0,5,0,3,2,3,0,48,1
+IGHV4-61*01,IGHD3-22*01,IGHJ1*01,0,0,0,0,6,0,0,0,7,0,64,1
+IGHV3-66*02,IGHD6-13*01,IGHJ4*02,0,0,2,6,8,0,6,17,7,0,57,1
+IGHV3-66*02,IGHD6-13*01,IGHJ4*02,0,2,4,6,8,0,6,3,1,0,33,1

test/new-results/test/parameters/simu/hmm/cluster_size.csv CHANGED Viewed

@@ -1,2 +1,2 @@
 cluster_size,count
-1,10
+1,36

test/new-results/test/parameters/simu/hmm/d-mean-mute-freqs.csv CHANGED Viewed

@@ -1,19 +1,19 @@
 bin_low_edge,contents,binlabel,error
 -0.01,0.0,,0.0
-0.0,0.6,,0.2449489742783178
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 0.01,0.0,,0.0
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 0.04,0.0,,0.0
 0.05,0.0,,0.0
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-0.07,0.3,,0.17320508075688773
-0.08,0.1,,0.1
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 0.09,0.0,,0.0
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 0.11,0.0,,0.0
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 0.14,0.0,,0.0
 0.15,0.0,,0.0
 0.16,0.0,,0.0

test/new-results/test/parameters/simu/hmm/d-mean-n-muted.csv CHANGED Viewed

@@ -1,8 +1,8 @@
 bin_low_edge,contents,binlabel,error
 -1.5,0.0,,0.0
--0.5,6.0,,2.449489742783178
-0.5,4.0,,2.0
-1.5,0.0,,0.0
+-0.5,23.0,,4.795831523312719
+0.5,10.0,,3.1622776601683795
+1.5,3.0,,1.7320508075688772
 2.5,0.0,,0.0
 3.5,0.0,,0.0
 4.5,0.0,,0.0

test/new-results/test/parameters/simu/hmm/d_gene-d_3p_del-probs.csv CHANGED Viewed

@@ -1,3 +1,8 @@
 d_3p_del,d_gene,count
 0,IGHD6-13*01,3
-6,IGHD6-13*01,7
+6,IGHD6-13*01,13
+0,IGHD3-16*02,2
+6,IGHD1-20*01,2
+0,IGHD3-22*01,8
+5,IGHD6-13*01,7
+0,IGHD6-19*01,1

test/new-results/test/parameters/simu/hmm/d_gene-d_5p_del-probs.csv CHANGED Viewed

@@ -1,4 +1,11 @@
 d_5p_del,d_gene,count
-7,IGHD6-13*01,3
-3,IGHD6-13*01,6
+7,IGHD6-13*01,2
+3,IGHD6-13*01,10
+8,IGHD3-16*02,2
+3,IGHD1-20*01,2
+9,IGHD6-13*01,1
+0,IGHD6-13*01,1
+0,IGHD3-22*01,8
+2,IGHD6-13*01,8
+0,IGHD6-19*01,1
 4,IGHD6-13*01,1

test/new-results/test/parameters/simu/hmm/d_gene-probs.csv CHANGED Viewed

@@ -1,2 +1,6 @@
 d_gene,count
-IGHD6-13*01,10
+IGHD6-13*01,23
+IGHD3-16*02,2
+IGHD1-20*01,2
+IGHD3-22*01,8
+IGHD6-19*01,1

test/new-results/test/parameters/simu/hmm/d_gene-vd_insertion-probs.csv CHANGED Viewed

@@ -1,4 +1,12 @@
 vd_insertion,d_gene,count
-4,IGHD6-13*01,3
-2,IGHD6-13*01,6
+4,IGHD6-13*01,2
+2,IGHD6-13*01,10
+0,IGHD3-16*02,2
+6,IGHD1-20*01,2
+6,IGHD6-13*01,1
+10,IGHD6-13*01,1
+0,IGHD3-22*01,8
+9,IGHD6-13*01,7
+2,IGHD6-19*01,1
+17,IGHD6-13*01,1
 3,IGHD6-13*01,1

test/new-results/test/parameters/simu/hmm/dj_insertion_content.csv CHANGED Viewed

@@ -1,5 +1,5 @@
 dj_insertion_content,count
-A,11
-C,16
-G,16
-T,21
+A,17
+C,57
+G,22
+T,44

test/new-results/test/parameters/simu/hmm/fv_insertion-probs.csv CHANGED Viewed

@@ -1,3 +1,4 @@
 fv_insertion,count
-0,3
-3,7
+3,13
+6,15
+0,8

test/new-results/test/parameters/simu/hmm/germline-sets/igh/extras.csv CHANGED Viewed

@@ -1,5 +1,11 @@
 gene,cyst_position,tryp_position,phen_position,aligned_seq
+IGHV1-18*01,285,,,
 IGHV3-7*05,285,,,
+IGHV5-51*01,285,,,
 IGHV3-66*02,282,,,
+IGHV3-23*01,285,,,
+IGHV4-61*01,288,,,
+IGHV4-4*09,282,,,
 IGHJ4*02,,14,,
 IGHJ6*02,,29,,
+IGHJ1*01,,18,,

test/new-results/test/parameters/simu/hmm/germline-sets/igh/ighd.fasta CHANGED Viewed

@@ -1,2 +1,10 @@
+>IGHD1-20*01
+GGTATAACTGGAACGAC
+>IGHD3-16*02
+GTATTATGATTACGTTTGGGGGAGTTATCGTTATACC
+>IGHD3-22*01
+GTATTACTATGATAGTAGTGGTTATTACTAC
 >IGHD6-13*01
 GGGTATAGCAGCAGCTGGTAC
+>IGHD6-19*01
+GGGTATAGCAGTGGCTGGTAC

test/new-results/test/parameters/simu/hmm/germline-sets/igh/ighj.fasta CHANGED Viewed

@@ -1,3 +1,5 @@
+>IGHJ1*01
+GCTGAATACTTCCAGCACTGGGGCCAGGGCACCCTGGTCACCGTCTCCTCAG
 >IGHJ4*02
 ACTACTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG
 >IGHJ6*02

test/new-results/test/parameters/simu/hmm/germline-sets/igh/ighv.fasta CHANGED Viewed

@@ -1,4 +1,14 @@
+>IGHV1-18*01
+CAGGTTCAGCTGGTGCAGTCTGGAGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGTTACACCTTTACCAGCTATGGTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGATGGATCAGCGCTTACAATGGTAACACAAACTATGCACAGAAGCTCCAGGGCAGAGTCACCATGACCACAGACACATCCACGAGCACAGCCTACATGGAGCTGAGGAGCCTGAGATCTGACGACACGGCCGTGTATTACTGTGCGAGAGA
+>IGHV3-23*01
+GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGTTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGTGCGAAAGA
 >IGHV3-66*02
 GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTCCAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCGTCAGTAGCAACTACATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGTTATTTATAGCGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTTCAAATGAACAGCCTGAGAGCTGAGGACACGGCTGTGTATTACTGTGCGAGAGA
 >IGHV3-7*05
 GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTCCAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGTAGCTATTGGATGAGCTGGGTCCGCCAGGCTCCAGGGAAAGGGCTGGAGTGGGTGGCCAACATAAAGCAAGATGGAAGTGAGAAATACTATGTGGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTGTATTACTGTGCGAGAGA
+>IGHV4-4*09
+CAGGTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGTAGTTACTACTGGAGCTGGATCCGGCAGCCCCCAGGGAAGGGACTGGAGTGGATTGGGTACATCTATACCAGTGGGAGCACCAACTACAACCCCTCCCTCAAGAGTCGAGTCACCATATCAGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCCGCAGACACGGCCGTGTATTACTGTGCGAGAGA
+>IGHV4-61*01
+CAGGTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCGTCAGCAGTGGTAGTTACTACTGGAGCTGGATCCGGCAGCCCCCAGGGAAGGGACTGGAGTGGATTGGGTATATCTATTACAGTGGGAGCACCAACTACAACCCCTCCCTCAAGAGTCGAGTCACCATATCAGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCTGCGGACACGGCCGTGTATTACTGTGCGAGAGA
+>IGHV5-51*01
+GAGGTGCAGCTGGTGCAGTCTGGAGCAGAGGTGAAAAAGCCCGGGGAGTCTCTGAAGATCTCCTGTAAGGGTTCTGGATACAGCTTTACCAGCTACTGGATCGGCTGGGTGCGCCAGATGCCCGGGAAAGGCCTGGAGTGGATGGGGATCATCTATCCTGGTGACTCTGATACCAGATACAGCCCGTCCTTCCAAGGCCAGGTCACCATCTCAGCCGACAAGTCCATCAGCACCGCCTACCTGCAGTGGAGCAGCCTGAAGGCCTCGGACACCGCCATGTATTACTGTGCGAGACA