partis-bcr 1.0.11.post1.dev1__cp312-cp312-macosx_10_13_universal2.whl → 1.0.11.post1.dev7__cp312-cp312-macosx_10_13_universal2.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (645) hide show
  1. bin/partis +1 -1
  2. bin/partis-test.py +6 -0
  3. bin/partis.py +1 -1
  4. {partis_bcr-1.0.11.post1.dev1.data → partis_bcr-1.0.11.post1.dev7.data}/scripts/partis-test.py +6 -0
  5. {partis_bcr-1.0.11.post1.dev1.dist-info → partis_bcr-1.0.11.post1.dev7.dist-info}/METADATA +1 -1
  6. {partis_bcr-1.0.11.post1.dev1.dist-info → partis_bcr-1.0.11.post1.dev7.dist-info}/RECORD +645 -127
  7. python/recombinator.py +2 -0
  8. python/treegenerator.py +1 -1
  9. test/new-results/annotate-new-simu-annotation-performance/hmm/boundaries/d_3p_del.csv +7 -0
  10. test/new-results/annotate-new-simu-annotation-performance/hmm/boundaries/d_5p_del.csv +8 -0
  11. test/new-results/annotate-new-simu-annotation-performance/hmm/boundaries/dj_insertion.csv +8 -0
  12. test/new-results/annotate-new-simu-annotation-performance/hmm/boundaries/fv_insertion.csv +10 -0
  13. test/new-results/annotate-new-simu-annotation-performance/hmm/boundaries/j_3p_del.csv +4 -0
  14. test/new-results/annotate-new-simu-annotation-performance/hmm/boundaries/j_5p_del.csv +8 -0
  15. test/new-results/annotate-new-simu-annotation-performance/hmm/boundaries/jf_insertion.csv +4 -0
  16. test/new-results/annotate-new-simu-annotation-performance/hmm/boundaries/shm_indel_length.csv +8 -0
  17. test/new-results/annotate-new-simu-annotation-performance/hmm/boundaries/v_3p_del.csv +4 -0
  18. test/new-results/annotate-new-simu-annotation-performance/hmm/boundaries/v_5p_del.csv +4 -0
  19. test/new-results/annotate-new-simu-annotation-performance/hmm/boundaries/vd_insertion.csv +8 -0
  20. test/new-results/annotate-new-simu-annotation-performance/hmm/gene-call/d_allele_fraction_correct_vs_per_gene_support.csv +28 -0
  21. test/new-results/annotate-new-simu-annotation-performance/hmm/gene-call/d_fraction_correct_vs_mute_freq.csv +28 -0
  22. test/new-results/annotate-new-simu-annotation-performance/hmm/gene-call/d_gene.csv +5 -0
  23. test/new-results/annotate-new-simu-annotation-performance/hmm/gene-call/j_allele_fraction_correct_vs_per_gene_support.csv +28 -0
  24. test/new-results/annotate-new-simu-annotation-performance/hmm/gene-call/j_fraction_correct_vs_mute_freq.csv +28 -0
  25. test/new-results/annotate-new-simu-annotation-performance/hmm/gene-call/j_gene.csv +5 -0
  26. test/new-results/annotate-new-simu-annotation-performance/hmm/gene-call/v_allele_fraction_correct_vs_per_gene_support.csv +28 -0
  27. test/new-results/annotate-new-simu-annotation-performance/hmm/gene-call/v_fraction_correct_vs_mute_freq.csv +28 -0
  28. test/new-results/annotate-new-simu-annotation-performance/hmm/gene-call/v_gene.csv +5 -0
  29. test/new-results/annotate-new-simu-annotation-performance/hmm/mutation/cdr3_hamming_to_true_naive.csv +7 -0
  30. test/new-results/annotate-new-simu-annotation-performance/hmm/mutation/cdr3_muted_bases.csv +7 -0
  31. test/new-results/annotate-new-simu-annotation-performance/hmm/mutation/d_hamming_to_true_naive.csv +5 -0
  32. test/new-results/annotate-new-simu-annotation-performance/hmm/mutation/d_muted_bases.csv +6 -0
  33. test/new-results/annotate-new-simu-annotation-performance/hmm/mutation/hamming_to_true_naive.csv +7 -0
  34. test/new-results/annotate-new-simu-annotation-performance/hmm/mutation/j_hamming_to_true_naive.csv +4 -0
  35. test/new-results/annotate-new-simu-annotation-performance/hmm/mutation/j_muted_bases.csv +5 -0
  36. test/new-results/annotate-new-simu-annotation-performance/hmm/mutation/mute_freqs.csv +28 -0
  37. test/new-results/annotate-new-simu-annotation-performance/hmm/mutation/muted_bases.csv +7 -0
  38. test/new-results/annotate-new-simu-annotation-performance/hmm/mutation/v_hamming_to_true_naive.csv +4 -0
  39. test/new-results/annotate-new-simu-annotation-performance/hmm/mutation/v_muted_bases.csv +4 -0
  40. test/new-results/annotate-new-simu-annotation-performance/sw/boundaries/d_3p_del.csv +8 -0
  41. test/new-results/annotate-new-simu-annotation-performance/sw/boundaries/d_5p_del.csv +6 -0
  42. test/new-results/annotate-new-simu-annotation-performance/sw/boundaries/dj_insertion.csv +7 -0
  43. test/new-results/annotate-new-simu-annotation-performance/sw/boundaries/fv_insertion.csv +4 -0
  44. test/new-results/annotate-new-simu-annotation-performance/sw/boundaries/j_3p_del.csv +4 -0
  45. test/new-results/annotate-new-simu-annotation-performance/sw/boundaries/j_5p_del.csv +9 -0
  46. test/new-results/annotate-new-simu-annotation-performance/sw/boundaries/jf_insertion.csv +4 -0
  47. test/new-results/annotate-new-simu-annotation-performance/sw/boundaries/shm_indel_length.csv +8 -0
  48. test/new-results/annotate-new-simu-annotation-performance/sw/boundaries/v_3p_del.csv +4 -0
  49. test/new-results/annotate-new-simu-annotation-performance/sw/boundaries/v_5p_del.csv +4 -0
  50. test/new-results/annotate-new-simu-annotation-performance/sw/boundaries/vd_insertion.csv +6 -0
  51. test/new-results/annotate-new-simu-annotation-performance/sw/gene-call/d_fraction_correct_vs_mute_freq.csv +28 -0
  52. test/new-results/annotate-new-simu-annotation-performance/sw/gene-call/d_gene.csv +5 -0
  53. test/new-results/annotate-new-simu-annotation-performance/sw/gene-call/j_fraction_correct_vs_mute_freq.csv +28 -0
  54. test/new-results/annotate-new-simu-annotation-performance/sw/gene-call/j_gene.csv +5 -0
  55. test/new-results/annotate-new-simu-annotation-performance/sw/gene-call/v_fraction_correct_vs_mute_freq.csv +28 -0
  56. test/new-results/annotate-new-simu-annotation-performance/sw/gene-call/v_gene.csv +5 -0
  57. test/new-results/annotate-new-simu-annotation-performance/sw/mutation/cdr3_hamming_to_true_naive.csv +6 -0
  58. test/new-results/annotate-new-simu-annotation-performance/sw/mutation/cdr3_muted_bases.csv +7 -0
  59. test/new-results/annotate-new-simu-annotation-performance/sw/mutation/d_hamming_to_true_naive.csv +5 -0
  60. test/new-results/annotate-new-simu-annotation-performance/sw/mutation/d_muted_bases.csv +5 -0
  61. test/new-results/annotate-new-simu-annotation-performance/sw/mutation/hamming_to_true_naive.csv +6 -0
  62. test/new-results/annotate-new-simu-annotation-performance/sw/mutation/j_hamming_to_true_naive.csv +4 -0
  63. test/new-results/annotate-new-simu-annotation-performance/sw/mutation/j_muted_bases.csv +6 -0
  64. test/new-results/annotate-new-simu-annotation-performance/sw/mutation/mute_freqs.csv +28 -0
  65. test/new-results/annotate-new-simu-annotation-performance/sw/mutation/muted_bases.csv +7 -0
  66. test/new-results/annotate-new-simu-annotation-performance/sw/mutation/v_hamming_to_true_naive.csv +4 -0
  67. test/new-results/annotate-new-simu-annotation-performance/sw/mutation/v_muted_bases.csv +4 -0
  68. test/new-results/annotate-new-simu.yaml +1 -0
  69. test/new-results/cache-new-partition.csv +59 -0
  70. test/new-results/get-selection-metrics-new-simu.yaml +1 -0
  71. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/boundaries/d_3p_del.csv +7 -0
  72. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/boundaries/d_5p_del.csv +6 -0
  73. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/boundaries/dj_insertion.csv +8 -0
  74. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/boundaries/fv_insertion.csv +10 -0
  75. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/boundaries/j_3p_del.csv +4 -0
  76. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/boundaries/j_5p_del.csv +8 -0
  77. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/boundaries/jf_insertion.csv +4 -0
  78. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/boundaries/shm_indel_length.csv +8 -0
  79. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/boundaries/v_3p_del.csv +4 -0
  80. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/boundaries/v_5p_del.csv +4 -0
  81. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/boundaries/vd_insertion.csv +6 -0
  82. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/gene-call/d_allele_fraction_correct_vs_per_gene_support.csv +28 -0
  83. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/gene-call/d_fraction_correct_vs_mute_freq.csv +28 -0
  84. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/gene-call/d_gene.csv +5 -0
  85. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/gene-call/j_allele_fraction_correct_vs_per_gene_support.csv +28 -0
  86. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/gene-call/j_fraction_correct_vs_mute_freq.csv +28 -0
  87. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/gene-call/j_gene.csv +5 -0
  88. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/gene-call/v_allele_fraction_correct_vs_per_gene_support.csv +28 -0
  89. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/gene-call/v_fraction_correct_vs_mute_freq.csv +28 -0
  90. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/gene-call/v_gene.csv +5 -0
  91. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/mutation/cdr3_hamming_to_true_naive.csv +5 -0
  92. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/mutation/cdr3_muted_bases.csv +5 -0
  93. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/mutation/d_hamming_to_true_naive.csv +4 -0
  94. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/mutation/d_muted_bases.csv +4 -0
  95. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/mutation/hamming_to_true_naive.csv +5 -0
  96. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/mutation/j_hamming_to_true_naive.csv +4 -0
  97. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/mutation/j_muted_bases.csv +5 -0
  98. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/mutation/mute_freqs.csv +28 -0
  99. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/mutation/muted_bases.csv +5 -0
  100. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/mutation/v_hamming_to_true_naive.csv +4 -0
  101. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/mutation/v_muted_bases.csv +4 -0
  102. test/new-results/multi-annotate-new-simu-annotation-performance/sw/boundaries/d_3p_del.csv +8 -0
  103. test/new-results/multi-annotate-new-simu-annotation-performance/sw/boundaries/d_5p_del.csv +6 -0
  104. test/new-results/multi-annotate-new-simu-annotation-performance/sw/boundaries/dj_insertion.csv +7 -0
  105. test/new-results/multi-annotate-new-simu-annotation-performance/sw/boundaries/fv_insertion.csv +4 -0
  106. test/new-results/multi-annotate-new-simu-annotation-performance/sw/boundaries/j_3p_del.csv +4 -0
  107. test/new-results/multi-annotate-new-simu-annotation-performance/sw/boundaries/j_5p_del.csv +9 -0
  108. test/new-results/multi-annotate-new-simu-annotation-performance/sw/boundaries/jf_insertion.csv +4 -0
  109. test/new-results/multi-annotate-new-simu-annotation-performance/sw/boundaries/shm_indel_length.csv +8 -0
  110. test/new-results/multi-annotate-new-simu-annotation-performance/sw/boundaries/v_3p_del.csv +4 -0
  111. test/new-results/multi-annotate-new-simu-annotation-performance/sw/boundaries/v_5p_del.csv +4 -0
  112. test/new-results/multi-annotate-new-simu-annotation-performance/sw/boundaries/vd_insertion.csv +6 -0
  113. test/new-results/multi-annotate-new-simu-annotation-performance/sw/gene-call/d_fraction_correct_vs_mute_freq.csv +28 -0
  114. test/new-results/multi-annotate-new-simu-annotation-performance/sw/gene-call/d_gene.csv +5 -0
  115. test/new-results/multi-annotate-new-simu-annotation-performance/sw/gene-call/j_fraction_correct_vs_mute_freq.csv +28 -0
  116. test/new-results/multi-annotate-new-simu-annotation-performance/sw/gene-call/j_gene.csv +5 -0
  117. test/new-results/multi-annotate-new-simu-annotation-performance/sw/gene-call/v_fraction_correct_vs_mute_freq.csv +28 -0
  118. test/new-results/multi-annotate-new-simu-annotation-performance/sw/gene-call/v_gene.csv +5 -0
  119. test/new-results/multi-annotate-new-simu-annotation-performance/sw/mutation/cdr3_hamming_to_true_naive.csv +6 -0
  120. test/new-results/multi-annotate-new-simu-annotation-performance/sw/mutation/cdr3_muted_bases.csv +7 -0
  121. test/new-results/multi-annotate-new-simu-annotation-performance/sw/mutation/d_hamming_to_true_naive.csv +5 -0
  122. test/new-results/multi-annotate-new-simu-annotation-performance/sw/mutation/d_muted_bases.csv +5 -0
  123. test/new-results/multi-annotate-new-simu-annotation-performance/sw/mutation/hamming_to_true_naive.csv +6 -0
  124. test/new-results/multi-annotate-new-simu-annotation-performance/sw/mutation/j_hamming_to_true_naive.csv +4 -0
  125. test/new-results/multi-annotate-new-simu-annotation-performance/sw/mutation/j_muted_bases.csv +6 -0
  126. test/new-results/multi-annotate-new-simu-annotation-performance/sw/mutation/mute_freqs.csv +28 -0
  127. test/new-results/multi-annotate-new-simu-annotation-performance/sw/mutation/muted_bases.csv +7 -0
  128. test/new-results/multi-annotate-new-simu-annotation-performance/sw/mutation/v_hamming_to_true_naive.csv +4 -0
  129. test/new-results/multi-annotate-new-simu-annotation-performance/sw/mutation/v_muted_bases.csv +4 -0
  130. test/new-results/multi-annotate-new-simu.yaml +1 -0
  131. test/new-results/partition-new-simu/fasttree/iclust-0/fasttree.out +1 -0
  132. test/new-results/partition-new-simu/fasttree/iclust-0/input-seqs.fa +24 -0
  133. test/new-results/partition-new-simu/fasttree/iclust-0/log +23 -0
  134. test/new-results/partition-new-simu/fasttree/iclust-1/fasttree.out +1 -0
  135. test/new-results/partition-new-simu/fasttree/iclust-1/input-seqs.fa +16 -0
  136. test/new-results/partition-new-simu/fasttree/iclust-1/log +23 -0
  137. test/new-results/partition-new-simu/fasttree/iclust-2/fasttree.out +1 -0
  138. test/new-results/partition-new-simu/fasttree/iclust-2/input-seqs.fa +16 -0
  139. test/new-results/partition-new-simu/fasttree/iclust-2/log +22 -0
  140. test/new-results/partition-new-simu-annotation-performance/hmm/boundaries/d_3p_del.csv +7 -0
  141. test/new-results/partition-new-simu-annotation-performance/hmm/boundaries/d_5p_del.csv +6 -0
  142. test/new-results/partition-new-simu-annotation-performance/hmm/boundaries/dj_insertion.csv +8 -0
  143. test/new-results/partition-new-simu-annotation-performance/hmm/boundaries/fv_insertion.csv +10 -0
  144. test/new-results/partition-new-simu-annotation-performance/hmm/boundaries/j_3p_del.csv +4 -0
  145. test/new-results/partition-new-simu-annotation-performance/hmm/boundaries/j_5p_del.csv +8 -0
  146. test/new-results/partition-new-simu-annotation-performance/hmm/boundaries/jf_insertion.csv +4 -0
  147. test/new-results/partition-new-simu-annotation-performance/hmm/boundaries/shm_indel_length.csv +8 -0
  148. test/new-results/partition-new-simu-annotation-performance/hmm/boundaries/v_3p_del.csv +4 -0
  149. test/new-results/partition-new-simu-annotation-performance/hmm/boundaries/v_5p_del.csv +4 -0
  150. test/new-results/partition-new-simu-annotation-performance/hmm/boundaries/vd_insertion.csv +6 -0
  151. test/new-results/partition-new-simu-annotation-performance/hmm/gene-call/d_allele_fraction_correct_vs_per_gene_support.csv +28 -0
  152. test/new-results/partition-new-simu-annotation-performance/hmm/gene-call/d_fraction_correct_vs_mute_freq.csv +28 -0
  153. test/new-results/partition-new-simu-annotation-performance/hmm/gene-call/d_gene.csv +5 -0
  154. test/new-results/partition-new-simu-annotation-performance/hmm/gene-call/j_allele_fraction_correct_vs_per_gene_support.csv +28 -0
  155. test/new-results/partition-new-simu-annotation-performance/hmm/gene-call/j_fraction_correct_vs_mute_freq.csv +28 -0
  156. test/new-results/partition-new-simu-annotation-performance/hmm/gene-call/j_gene.csv +5 -0
  157. test/new-results/partition-new-simu-annotation-performance/hmm/gene-call/v_allele_fraction_correct_vs_per_gene_support.csv +28 -0
  158. test/new-results/partition-new-simu-annotation-performance/hmm/gene-call/v_fraction_correct_vs_mute_freq.csv +28 -0
  159. test/new-results/partition-new-simu-annotation-performance/hmm/gene-call/v_gene.csv +5 -0
  160. test/new-results/partition-new-simu-annotation-performance/hmm/mutation/cdr3_hamming_to_true_naive.csv +5 -0
  161. test/new-results/partition-new-simu-annotation-performance/hmm/mutation/cdr3_muted_bases.csv +5 -0
  162. test/new-results/partition-new-simu-annotation-performance/hmm/mutation/d_hamming_to_true_naive.csv +4 -0
  163. test/new-results/partition-new-simu-annotation-performance/hmm/mutation/d_muted_bases.csv +4 -0
  164. test/new-results/partition-new-simu-annotation-performance/hmm/mutation/hamming_to_true_naive.csv +5 -0
  165. test/new-results/partition-new-simu-annotation-performance/hmm/mutation/j_hamming_to_true_naive.csv +4 -0
  166. test/new-results/partition-new-simu-annotation-performance/hmm/mutation/j_muted_bases.csv +5 -0
  167. test/new-results/partition-new-simu-annotation-performance/hmm/mutation/mute_freqs.csv +28 -0
  168. test/new-results/partition-new-simu-annotation-performance/hmm/mutation/muted_bases.csv +5 -0
  169. test/new-results/partition-new-simu-annotation-performance/hmm/mutation/v_hamming_to_true_naive.csv +4 -0
  170. test/new-results/partition-new-simu-annotation-performance/hmm/mutation/v_muted_bases.csv +4 -0
  171. test/new-results/partition-new-simu-annotation-performance/sw/boundaries/d_3p_del.csv +8 -0
  172. test/new-results/partition-new-simu-annotation-performance/sw/boundaries/d_5p_del.csv +6 -0
  173. test/new-results/partition-new-simu-annotation-performance/sw/boundaries/dj_insertion.csv +7 -0
  174. test/new-results/partition-new-simu-annotation-performance/sw/boundaries/fv_insertion.csv +4 -0
  175. test/new-results/partition-new-simu-annotation-performance/sw/boundaries/j_3p_del.csv +4 -0
  176. test/new-results/partition-new-simu-annotation-performance/sw/boundaries/j_5p_del.csv +9 -0
  177. test/new-results/partition-new-simu-annotation-performance/sw/boundaries/jf_insertion.csv +4 -0
  178. test/new-results/partition-new-simu-annotation-performance/sw/boundaries/shm_indel_length.csv +8 -0
  179. test/new-results/partition-new-simu-annotation-performance/sw/boundaries/v_3p_del.csv +4 -0
  180. test/new-results/partition-new-simu-annotation-performance/sw/boundaries/v_5p_del.csv +4 -0
  181. test/new-results/partition-new-simu-annotation-performance/sw/boundaries/vd_insertion.csv +6 -0
  182. test/new-results/partition-new-simu-annotation-performance/sw/gene-call/d_fraction_correct_vs_mute_freq.csv +28 -0
  183. test/new-results/partition-new-simu-annotation-performance/sw/gene-call/d_gene.csv +5 -0
  184. test/new-results/partition-new-simu-annotation-performance/sw/gene-call/j_fraction_correct_vs_mute_freq.csv +28 -0
  185. test/new-results/partition-new-simu-annotation-performance/sw/gene-call/j_gene.csv +5 -0
  186. test/new-results/partition-new-simu-annotation-performance/sw/gene-call/v_fraction_correct_vs_mute_freq.csv +28 -0
  187. test/new-results/partition-new-simu-annotation-performance/sw/gene-call/v_gene.csv +5 -0
  188. test/new-results/partition-new-simu-annotation-performance/sw/mutation/cdr3_hamming_to_true_naive.csv +6 -0
  189. test/new-results/partition-new-simu-annotation-performance/sw/mutation/cdr3_muted_bases.csv +7 -0
  190. test/new-results/partition-new-simu-annotation-performance/sw/mutation/d_hamming_to_true_naive.csv +5 -0
  191. test/new-results/partition-new-simu-annotation-performance/sw/mutation/d_muted_bases.csv +5 -0
  192. test/new-results/partition-new-simu-annotation-performance/sw/mutation/hamming_to_true_naive.csv +6 -0
  193. test/new-results/partition-new-simu-annotation-performance/sw/mutation/j_hamming_to_true_naive.csv +4 -0
  194. test/new-results/partition-new-simu-annotation-performance/sw/mutation/j_muted_bases.csv +6 -0
  195. test/new-results/partition-new-simu-annotation-performance/sw/mutation/mute_freqs.csv +28 -0
  196. test/new-results/partition-new-simu-annotation-performance/sw/mutation/muted_bases.csv +7 -0
  197. test/new-results/partition-new-simu-annotation-performance/sw/mutation/v_hamming_to_true_naive.csv +4 -0
  198. test/new-results/partition-new-simu-annotation-performance/sw/mutation/v_muted_bases.csv +4 -0
  199. test/new-results/partition-new-simu.yaml +1 -0
  200. test/new-results/run-times.csv +9 -0
  201. test/new-results/seed-partition-new-simu.yaml +1 -0
  202. test/new-results/test/parameters/data/hmm/all-mean-mute-freqs.csv +43 -0
  203. test/new-results/test/parameters/data/hmm/all-mean-n-muted.csv +155 -0
  204. test/new-results/test/parameters/data/hmm/all-probs.csv +44 -0
  205. test/new-results/test/parameters/data/hmm/cluster_size.csv +2 -0
  206. test/new-results/test/parameters/data/hmm/d-mean-mute-freqs.csv +43 -0
  207. test/new-results/test/parameters/data/hmm/d-mean-n-muted.csv +14 -0
  208. test/new-results/test/parameters/data/hmm/d_gene-d_3p_del-probs.csv +34 -0
  209. test/new-results/test/parameters/data/hmm/d_gene-d_5p_del-probs.csv +42 -0
  210. test/new-results/test/parameters/data/hmm/d_gene-probs.csv +20 -0
  211. test/new-results/test/parameters/data/hmm/d_gene-vd_insertion-probs.csv +39 -0
  212. test/new-results/test/parameters/data/hmm/dj_insertion_content.csv +5 -0
  213. test/new-results/test/parameters/data/hmm/fv_insertion-probs.csv +4 -0
  214. test/new-results/test/parameters/data/hmm/germline-sets/igh/extras.csv +23 -0
  215. test/new-results/test/parameters/data/hmm/germline-sets/igh/ighd.fasta +38 -0
  216. test/new-results/test/parameters/data/hmm/germline-sets/igh/ighj.fasta +14 -0
  217. test/new-results/test/parameters/data/hmm/germline-sets/igh/ighv.fasta +30 -0
  218. test/new-results/test/parameters/data/hmm/hmms/IGHD1-20_star_01.yaml +449 -0
  219. test/new-results/test/parameters/data/hmm/hmms/IGHD1-26_star_01.yaml +512 -0
  220. test/new-results/test/parameters/data/hmm/hmms/IGHD2-15_star_01.yaml +743 -0
  221. test/new-results/test/parameters/data/hmm/hmms/IGHD2-21_star_01.yaml +681 -0
  222. test/new-results/test/parameters/data/hmm/hmms/IGHD2-21_star_02.yaml +681 -0
  223. test/new-results/test/parameters/data/hmm/hmms/IGHD2-2_star_01.yaml +743 -0
  224. test/new-results/test/parameters/data/hmm/hmms/IGHD2-8_star_01.yaml +744 -0
  225. test/new-results/test/parameters/data/hmm/hmms/IGHD2-8_star_02.yaml +743 -0
  226. test/new-results/test/parameters/data/hmm/hmms/IGHD3-10_star_01.yaml +743 -0
  227. test/new-results/test/parameters/data/hmm/hmms/IGHD3-10_star_03.yaml +744 -0
  228. test/new-results/test/parameters/data/hmm/hmms/IGHD3-16_star_02.yaml +870 -0
  229. test/new-results/test/parameters/data/hmm/hmms/IGHD3-22_star_01.yaml +743 -0
  230. test/new-results/test/parameters/data/hmm/hmms/IGHD3-3_star_01.yaml +744 -0
  231. test/new-results/test/parameters/data/hmm/hmms/IGHD4-17_star_01.yaml +429 -0
  232. test/new-results/test/parameters/data/hmm/hmms/IGHD4-4_star_01.yaml +428 -0
  233. test/new-results/test/parameters/data/hmm/hmms/IGHD5-5_star_01.yaml +513 -0
  234. test/new-results/test/parameters/data/hmm/hmms/IGHD6-13_star_01.yaml +533 -0
  235. test/new-results/test/parameters/data/hmm/hmms/IGHD6-19_star_01.yaml +534 -0
  236. test/new-results/test/parameters/data/hmm/hmms/IGHD6-6_star_01.yaml +470 -0
  237. test/new-results/test/parameters/data/hmm/hmms/IGHJ1_star_01.yaml +986 -0
  238. test/new-results/test/parameters/data/hmm/hmms/IGHJ2_star_01.yaml +1006 -0
  239. test/new-results/test/parameters/data/hmm/hmms/IGHJ3_star_02.yaml +946 -0
  240. test/new-results/test/parameters/data/hmm/hmms/IGHJ4_star_02.yaml +906 -0
  241. test/new-results/test/parameters/data/hmm/hmms/IGHJ5_star_02.yaml +966 -0
  242. test/new-results/test/parameters/data/hmm/hmms/IGHJ6_star_02.yaml +1206 -0
  243. test/new-results/test/parameters/data/hmm/hmms/IGHJ6_star_03.yaml +1206 -0
  244. test/new-results/test/parameters/data/hmm/hmms/IGHV1-18_star_01.yaml +4484 -0
  245. test/new-results/test/parameters/data/hmm/hmms/IGHV1-2_star_02.yaml +4484 -0
  246. test/new-results/test/parameters/data/hmm/hmms/IGHV2-5_star_02.yaml +4560 -0
  247. test/new-results/test/parameters/data/hmm/hmms/IGHV2-70D_star_04.yaml +4561 -0
  248. test/new-results/test/parameters/data/hmm/hmms/IGHV3-11_star_04.yaml +4484 -0
  249. test/new-results/test/parameters/data/hmm/hmms/IGHV3-23_star_01.yaml +4484 -0
  250. test/new-results/test/parameters/data/hmm/hmms/IGHV3-66_star_02.yaml +4439 -0
  251. test/new-results/test/parameters/data/hmm/hmms/IGHV3-69-1_star_02.yaml +4439 -0
  252. test/new-results/test/parameters/data/hmm/hmms/IGHV3-7_star_05.yaml +4484 -0
  253. test/new-results/test/parameters/data/hmm/hmms/IGHV3-9_star_02.yaml +4516 -0
  254. test/new-results/test/parameters/data/hmm/hmms/IGHV4-34_star_01.yaml +4439 -0
  255. test/new-results/test/parameters/data/hmm/hmms/IGHV4-39_star_09.yaml +4529 -0
  256. test/new-results/test/parameters/data/hmm/hmms/IGHV4-4_star_09.yaml +4438 -0
  257. test/new-results/test/parameters/data/hmm/hmms/IGHV4-61_star_01.yaml +4529 -0
  258. test/new-results/test/parameters/data/hmm/hmms/IGHV5-51_star_01.yaml +4484 -0
  259. test/new-results/test/parameters/data/hmm/j-mean-mute-freqs.csv +43 -0
  260. test/new-results/test/parameters/data/hmm/j-mean-n-muted.csv +25 -0
  261. test/new-results/test/parameters/data/hmm/j_gene-dj_insertion-probs.csv +31 -0
  262. test/new-results/test/parameters/data/hmm/j_gene-j_3p_del-probs.csv +8 -0
  263. test/new-results/test/parameters/data/hmm/j_gene-j_5p_del-probs.csv +31 -0
  264. test/new-results/test/parameters/data/hmm/j_gene-probs.csv +8 -0
  265. test/new-results/test/parameters/data/hmm/jf_insertion-probs.csv +3 -0
  266. test/new-results/test/parameters/data/hmm/mute-freqs/IGHD1-20_star_01.csv +8 -0
  267. test/new-results/test/parameters/data/hmm/mute-freqs/IGHD1-26_star_01.csv +8 -0
  268. test/new-results/test/parameters/data/hmm/mute-freqs/IGHD2-15_star_01.csv +32 -0
  269. test/new-results/test/parameters/data/hmm/mute-freqs/IGHD2-21_star_01.csv +17 -0
  270. test/new-results/test/parameters/data/hmm/mute-freqs/IGHD2-21_star_02.csv +29 -0
  271. test/new-results/test/parameters/data/hmm/mute-freqs/IGHD2-2_star_01.csv +10 -0
  272. test/new-results/test/parameters/data/hmm/mute-freqs/IGHD2-8_star_01.csv +32 -0
  273. test/new-results/test/parameters/data/hmm/mute-freqs/IGHD2-8_star_02.csv +9 -0
  274. test/new-results/test/parameters/data/hmm/mute-freqs/IGHD3-10_star_01.csv +27 -0
  275. test/new-results/test/parameters/data/hmm/mute-freqs/IGHD3-10_star_03.csv +14 -0
  276. test/new-results/test/parameters/data/hmm/mute-freqs/IGHD3-16_star_02.csv +35 -0
  277. test/new-results/test/parameters/data/hmm/mute-freqs/IGHD3-22_star_01.csv +32 -0
  278. test/new-results/test/parameters/data/hmm/mute-freqs/IGHD3-3_star_01.csv +21 -0
  279. test/new-results/test/parameters/data/hmm/mute-freqs/IGHD4-17_star_01.csv +12 -0
  280. test/new-results/test/parameters/data/hmm/mute-freqs/IGHD4-4_star_01.csv +12 -0
  281. test/new-results/test/parameters/data/hmm/mute-freqs/IGHD5-5_star_01.csv +13 -0
  282. test/new-results/test/parameters/data/hmm/mute-freqs/IGHD6-13_star_01.csv +22 -0
  283. test/new-results/test/parameters/data/hmm/mute-freqs/IGHD6-19_star_01.csv +22 -0
  284. test/new-results/test/parameters/data/hmm/mute-freqs/IGHD6-6_star_01.csv +19 -0
  285. test/new-results/test/parameters/data/hmm/mute-freqs/IGHJ1_star_01.csv +52 -0
  286. test/new-results/test/parameters/data/hmm/mute-freqs/IGHJ2_star_01.csv +54 -0
  287. test/new-results/test/parameters/data/hmm/mute-freqs/IGHJ3_star_02.csv +51 -0
  288. test/new-results/test/parameters/data/hmm/mute-freqs/IGHJ4_star_02.csv +49 -0
  289. test/new-results/test/parameters/data/hmm/mute-freqs/IGHJ5_star_02.csv +50 -0
  290. test/new-results/test/parameters/data/hmm/mute-freqs/IGHJ6_star_02.csv +33 -0
  291. test/new-results/test/parameters/data/hmm/mute-freqs/IGHJ6_star_03.csv +40 -0
  292. test/new-results/test/parameters/data/hmm/mute-freqs/IGHV1-18_star_01.csv +297 -0
  293. test/new-results/test/parameters/data/hmm/mute-freqs/IGHV1-2_star_02.csv +296 -0
  294. test/new-results/test/parameters/data/hmm/mute-freqs/IGHV2-5_star_02.csv +66 -0
  295. test/new-results/test/parameters/data/hmm/mute-freqs/IGHV2-70D_star_04.csv +89 -0
  296. test/new-results/test/parameters/data/hmm/mute-freqs/IGHV3-11_star_04.csv +73 -0
  297. test/new-results/test/parameters/data/hmm/mute-freqs/IGHV3-23_star_01.csv +297 -0
  298. test/new-results/test/parameters/data/hmm/mute-freqs/IGHV3-66_star_02.csv +294 -0
  299. test/new-results/test/parameters/data/hmm/mute-freqs/IGHV3-69-1_star_02.csv +38 -0
  300. test/new-results/test/parameters/data/hmm/mute-freqs/IGHV3-7_star_05.csv +70 -0
  301. test/new-results/test/parameters/data/hmm/mute-freqs/IGHV3-9_star_02.csv +40 -0
  302. test/new-results/test/parameters/data/hmm/mute-freqs/IGHV4-34_star_01.csv +40 -0
  303. test/new-results/test/parameters/data/hmm/mute-freqs/IGHV4-39_star_09.csv +40 -0
  304. test/new-results/test/parameters/data/hmm/mute-freqs/IGHV4-4_star_09.csv +59 -0
  305. test/new-results/test/parameters/data/hmm/mute-freqs/IGHV4-61_star_01.csv +300 -0
  306. test/new-results/test/parameters/data/hmm/mute-freqs/IGHV5-51_star_01.csv +296 -0
  307. test/new-results/test/parameters/data/hmm/seq_content.csv +5 -0
  308. test/new-results/test/parameters/data/hmm/v-mean-mute-freqs.csv +43 -0
  309. test/new-results/test/parameters/data/hmm/v-mean-n-muted.csv +122 -0
  310. test/new-results/test/parameters/data/hmm/v_gene-probs.csv +16 -0
  311. test/new-results/test/parameters/data/hmm/v_gene-v_3p_del-probs.csv +24 -0
  312. test/new-results/test/parameters/data/hmm/v_gene-v_5p_del-probs.csv +16 -0
  313. test/new-results/test/parameters/data/hmm/vd_insertion_content.csv +5 -0
  314. test/new-results/test/parameters/data/sw/all-mean-mute-freqs.csv +43 -0
  315. test/new-results/test/parameters/data/sw/all-mean-n-muted.csv +155 -0
  316. test/new-results/test/parameters/data/sw/all-probs.csv +44 -0
  317. test/new-results/test/parameters/data/sw/cluster_size.csv +2 -0
  318. test/new-results/test/parameters/data/sw/d-mean-mute-freqs.csv +43 -0
  319. test/new-results/test/parameters/data/sw/d-mean-n-muted.csv +14 -0
  320. test/new-results/test/parameters/data/sw/d_gene-d_3p_del-probs.csv +40 -0
  321. test/new-results/test/parameters/data/sw/d_gene-d_5p_del-probs.csv +42 -0
  322. test/new-results/test/parameters/data/sw/d_gene-probs.csv +23 -0
  323. test/new-results/test/parameters/data/sw/d_gene-vd_insertion-probs.csv +40 -0
  324. test/new-results/test/parameters/data/sw/dj_insertion_content.csv +5 -0
  325. test/new-results/test/parameters/data/sw/fv_insertion-probs.csv +3 -0
  326. test/new-results/test/parameters/data/sw/germline-sets/igh/extras.csv +26 -0
  327. test/new-results/test/parameters/data/sw/germline-sets/igh/ighd.fasta +44 -0
  328. test/new-results/test/parameters/data/sw/germline-sets/igh/ighj.fasta +14 -0
  329. test/new-results/test/parameters/data/sw/germline-sets/igh/ighv.fasta +36 -0
  330. test/new-results/test/parameters/data/sw/hmms/IGHD1-1_star_01.yaml +450 -0
  331. test/new-results/test/parameters/data/sw/hmms/IGHD1-20_star_01.yaml +449 -0
  332. test/new-results/test/parameters/data/sw/hmms/IGHD1-26_star_01.yaml +512 -0
  333. test/new-results/test/parameters/data/sw/hmms/IGHD2-15_star_01.yaml +744 -0
  334. test/new-results/test/parameters/data/sw/hmms/IGHD2-21_star_01.yaml +681 -0
  335. test/new-results/test/parameters/data/sw/hmms/IGHD2-21_star_02.yaml +681 -0
  336. test/new-results/test/parameters/data/sw/hmms/IGHD2-2_star_01.yaml +743 -0
  337. test/new-results/test/parameters/data/sw/hmms/IGHD2-8_star_01.yaml +744 -0
  338. test/new-results/test/parameters/data/sw/hmms/IGHD2-8_star_02.yaml +743 -0
  339. test/new-results/test/parameters/data/sw/hmms/IGHD3-10_star_01.yaml +743 -0
  340. test/new-results/test/parameters/data/sw/hmms/IGHD3-10_star_03.yaml +744 -0
  341. test/new-results/test/parameters/data/sw/hmms/IGHD3-16_star_02.yaml +869 -0
  342. test/new-results/test/parameters/data/sw/hmms/IGHD3-16_star_03.yaml +869 -0
  343. test/new-results/test/parameters/data/sw/hmms/IGHD3-22_star_01.yaml +743 -0
  344. test/new-results/test/parameters/data/sw/hmms/IGHD3-3_star_01.yaml +744 -0
  345. test/new-results/test/parameters/data/sw/hmms/IGHD4-17_star_01.yaml +429 -0
  346. test/new-results/test/parameters/data/sw/hmms/IGHD4-4_star_01.yaml +428 -0
  347. test/new-results/test/parameters/data/sw/hmms/IGHD5-5_star_01.yaml +513 -0
  348. test/new-results/test/parameters/data/sw/hmms/IGHD6-13_star_01.yaml +533 -0
  349. test/new-results/test/parameters/data/sw/hmms/IGHD6-19_star_01.yaml +533 -0
  350. test/new-results/test/parameters/data/sw/hmms/IGHD6-25_star_01.yaml +470 -0
  351. test/new-results/test/parameters/data/sw/hmms/IGHD6-6_star_01.yaml +470 -0
  352. test/new-results/test/parameters/data/sw/hmms/IGHJ1_star_01.yaml +986 -0
  353. test/new-results/test/parameters/data/sw/hmms/IGHJ2_star_01.yaml +1006 -0
  354. test/new-results/test/parameters/data/sw/hmms/IGHJ3_star_02.yaml +946 -0
  355. test/new-results/test/parameters/data/sw/hmms/IGHJ4_star_02.yaml +906 -0
  356. test/new-results/test/parameters/data/sw/hmms/IGHJ5_star_02.yaml +966 -0
  357. test/new-results/test/parameters/data/sw/hmms/IGHJ6_star_02.yaml +1206 -0
  358. test/new-results/test/parameters/data/sw/hmms/IGHJ6_star_03.yaml +1206 -0
  359. test/new-results/test/parameters/data/sw/hmms/IGHV1-18_star_01.yaml +4484 -0
  360. test/new-results/test/parameters/data/sw/hmms/IGHV1-2_star_02.yaml +4484 -0
  361. test/new-results/test/parameters/data/sw/hmms/IGHV2-5_star_02.yaml +4560 -0
  362. test/new-results/test/parameters/data/sw/hmms/IGHV2-70D_star_04.yaml +4561 -0
  363. test/new-results/test/parameters/data/sw/hmms/IGHV3-11_star_04.yaml +4484 -0
  364. test/new-results/test/parameters/data/sw/hmms/IGHV3-23_star_01.yaml +4484 -0
  365. test/new-results/test/parameters/data/sw/hmms/IGHV3-23_star_03.yaml +4484 -0
  366. test/new-results/test/parameters/data/sw/hmms/IGHV3-30_star_04.yaml +4484 -0
  367. test/new-results/test/parameters/data/sw/hmms/IGHV3-48_star_03.yaml +4484 -0
  368. test/new-results/test/parameters/data/sw/hmms/IGHV3-66_star_02.yaml +4439 -0
  369. test/new-results/test/parameters/data/sw/hmms/IGHV3-69-1_star_02.yaml +4439 -0
  370. test/new-results/test/parameters/data/sw/hmms/IGHV3-7_star_05.yaml +4484 -0
  371. test/new-results/test/parameters/data/sw/hmms/IGHV3-9_star_02.yaml +4516 -0
  372. test/new-results/test/parameters/data/sw/hmms/IGHV4-34_star_01.yaml +4439 -0
  373. test/new-results/test/parameters/data/sw/hmms/IGHV4-39_star_09.yaml +4529 -0
  374. test/new-results/test/parameters/data/sw/hmms/IGHV4-4_star_09.yaml +4438 -0
  375. test/new-results/test/parameters/data/sw/hmms/IGHV4-61_star_01.yaml +4529 -0
  376. test/new-results/test/parameters/data/sw/hmms/IGHV5-51_star_01.yaml +4484 -0
  377. test/new-results/test/parameters/data/sw/j-mean-mute-freqs.csv +43 -0
  378. test/new-results/test/parameters/data/sw/j-mean-n-muted.csv +25 -0
  379. test/new-results/test/parameters/data/sw/j_gene-dj_insertion-probs.csv +32 -0
  380. test/new-results/test/parameters/data/sw/j_gene-j_3p_del-probs.csv +11 -0
  381. test/new-results/test/parameters/data/sw/j_gene-j_5p_del-probs.csv +31 -0
  382. test/new-results/test/parameters/data/sw/j_gene-probs.csv +8 -0
  383. test/new-results/test/parameters/data/sw/jf_insertion-probs.csv +3 -0
  384. test/new-results/test/parameters/data/sw/mute-freqs/IGHD1-1_star_01.csv +4 -0
  385. test/new-results/test/parameters/data/sw/mute-freqs/IGHD1-20_star_01.csv +8 -0
  386. test/new-results/test/parameters/data/sw/mute-freqs/IGHD1-26_star_01.csv +8 -0
  387. test/new-results/test/parameters/data/sw/mute-freqs/IGHD2-15_star_01.csv +32 -0
  388. test/new-results/test/parameters/data/sw/mute-freqs/IGHD2-21_star_01.csv +28 -0
  389. test/new-results/test/parameters/data/sw/mute-freqs/IGHD2-21_star_02.csv +27 -0
  390. test/new-results/test/parameters/data/sw/mute-freqs/IGHD2-2_star_01.csv +27 -0
  391. test/new-results/test/parameters/data/sw/mute-freqs/IGHD2-8_star_01.csv +32 -0
  392. test/new-results/test/parameters/data/sw/mute-freqs/IGHD2-8_star_02.csv +12 -0
  393. test/new-results/test/parameters/data/sw/mute-freqs/IGHD3-10_star_01.csv +29 -0
  394. test/new-results/test/parameters/data/sw/mute-freqs/IGHD3-10_star_03.csv +14 -0
  395. test/new-results/test/parameters/data/sw/mute-freqs/IGHD3-16_star_02.csv +34 -0
  396. test/new-results/test/parameters/data/sw/mute-freqs/IGHD3-16_star_03.csv +20 -0
  397. test/new-results/test/parameters/data/sw/mute-freqs/IGHD3-22_star_01.csv +30 -0
  398. test/new-results/test/parameters/data/sw/mute-freqs/IGHD3-3_star_01.csv +21 -0
  399. test/new-results/test/parameters/data/sw/mute-freqs/IGHD4-17_star_01.csv +12 -0
  400. test/new-results/test/parameters/data/sw/mute-freqs/IGHD4-4_star_01.csv +9 -0
  401. test/new-results/test/parameters/data/sw/mute-freqs/IGHD5-5_star_01.csv +9 -0
  402. test/new-results/test/parameters/data/sw/mute-freqs/IGHD6-13_star_01.csv +20 -0
  403. test/new-results/test/parameters/data/sw/mute-freqs/IGHD6-19_star_01.csv +21 -0
  404. test/new-results/test/parameters/data/sw/mute-freqs/IGHD6-25_star_01.csv +12 -0
  405. test/new-results/test/parameters/data/sw/mute-freqs/IGHD6-6_star_01.csv +19 -0
  406. test/new-results/test/parameters/data/sw/mute-freqs/IGHJ1_star_01.csv +52 -0
  407. test/new-results/test/parameters/data/sw/mute-freqs/IGHJ2_star_01.csv +54 -0
  408. test/new-results/test/parameters/data/sw/mute-freqs/IGHJ3_star_02.csv +51 -0
  409. test/new-results/test/parameters/data/sw/mute-freqs/IGHJ4_star_02.csv +49 -0
  410. test/new-results/test/parameters/data/sw/mute-freqs/IGHJ5_star_02.csv +51 -0
  411. test/new-results/test/parameters/data/sw/mute-freqs/IGHJ6_star_02.csv +33 -0
  412. test/new-results/test/parameters/data/sw/mute-freqs/IGHJ6_star_03.csv +40 -0
  413. test/new-results/test/parameters/data/sw/mute-freqs/IGHV1-18_star_01.csv +297 -0
  414. test/new-results/test/parameters/data/sw/mute-freqs/IGHV1-2_star_02.csv +296 -0
  415. test/new-results/test/parameters/data/sw/mute-freqs/IGHV2-5_star_02.csv +66 -0
  416. test/new-results/test/parameters/data/sw/mute-freqs/IGHV2-70D_star_04.csv +89 -0
  417. test/new-results/test/parameters/data/sw/mute-freqs/IGHV3-11_star_04.csv +73 -0
  418. test/new-results/test/parameters/data/sw/mute-freqs/IGHV3-23_star_01.csv +297 -0
  419. test/new-results/test/parameters/data/sw/mute-freqs/IGHV3-23_star_03.csv +32 -0
  420. test/new-results/test/parameters/data/sw/mute-freqs/IGHV3-30_star_04.csv +38 -0
  421. test/new-results/test/parameters/data/sw/mute-freqs/IGHV3-48_star_03.csv +38 -0
  422. test/new-results/test/parameters/data/sw/mute-freqs/IGHV3-66_star_02.csv +292 -0
  423. test/new-results/test/parameters/data/sw/mute-freqs/IGHV3-69-1_star_02.csv +38 -0
  424. test/new-results/test/parameters/data/sw/mute-freqs/IGHV3-7_star_05.csv +70 -0
  425. test/new-results/test/parameters/data/sw/mute-freqs/IGHV3-9_star_02.csv +40 -0
  426. test/new-results/test/parameters/data/sw/mute-freqs/IGHV4-34_star_01.csv +40 -0
  427. test/new-results/test/parameters/data/sw/mute-freqs/IGHV4-39_star_09.csv +40 -0
  428. test/new-results/test/parameters/data/sw/mute-freqs/IGHV4-4_star_09.csv +59 -0
  429. test/new-results/test/parameters/data/sw/mute-freqs/IGHV4-61_star_01.csv +300 -0
  430. test/new-results/test/parameters/data/sw/mute-freqs/IGHV5-51_star_01.csv +296 -0
  431. test/new-results/test/parameters/data/sw/seq_content.csv +5 -0
  432. test/new-results/test/parameters/data/sw/v-mean-mute-freqs.csv +43 -0
  433. test/new-results/test/parameters/data/sw/v-mean-n-muted.csv +122 -0
  434. test/new-results/test/parameters/data/sw/v_gene-probs.csv +19 -0
  435. test/new-results/test/parameters/data/sw/v_gene-v_3p_del-probs.csv +25 -0
  436. test/new-results/test/parameters/data/sw/v_gene-v_5p_del-probs.csv +29 -0
  437. test/new-results/test/parameters/data/sw/vd_insertion_content.csv +5 -0
  438. test/new-results/test/parameters/data/sw-cache.yaml +1 -0
  439. test/new-results/test/parameters/simu/hmm/all-mean-mute-freqs.csv +3 -3
  440. test/new-results/test/parameters/simu/hmm/all-mean-n-muted.csv +11 -11
  441. test/new-results/test/parameters/simu/hmm/all-probs.csv +13 -3
  442. test/new-results/test/parameters/simu/hmm/cluster_size.csv +1 -1
  443. test/new-results/test/parameters/simu/hmm/d-mean-mute-freqs.csv +6 -6
  444. test/new-results/test/parameters/simu/hmm/d-mean-n-muted.csv +3 -3
  445. test/new-results/test/parameters/simu/hmm/d_gene-d_3p_del-probs.csv +6 -1
  446. test/new-results/test/parameters/simu/hmm/d_gene-d_5p_del-probs.csv +9 -2
  447. test/new-results/test/parameters/simu/hmm/d_gene-probs.csv +5 -1
  448. test/new-results/test/parameters/simu/hmm/d_gene-vd_insertion-probs.csv +10 -2
  449. test/new-results/test/parameters/simu/hmm/dj_insertion_content.csv +4 -4
  450. test/new-results/test/parameters/simu/hmm/fv_insertion-probs.csv +3 -2
  451. test/new-results/test/parameters/simu/hmm/germline-sets/igh/extras.csv +6 -0
  452. test/new-results/test/parameters/simu/hmm/germline-sets/igh/ighd.fasta +8 -0
  453. test/new-results/test/parameters/simu/hmm/germline-sets/igh/ighj.fasta +2 -0
  454. test/new-results/test/parameters/simu/hmm/germline-sets/igh/ighv.fasta +10 -0
  455. test/new-results/test/parameters/simu/hmm/hmms/IGHD1-20_star_01.yaml +449 -0
  456. test/new-results/test/parameters/simu/hmm/hmms/IGHD3-16_star_02.yaml +870 -0
  457. test/new-results/test/parameters/simu/hmm/hmms/IGHD3-22_star_01.yaml +744 -0
  458. test/new-results/test/parameters/simu/hmm/hmms/IGHD6-13_star_01.yaml +267 -268
  459. test/new-results/test/parameters/simu/hmm/hmms/IGHD6-19_star_01.yaml +534 -0
  460. test/new-results/test/parameters/simu/hmm/hmms/IGHJ1_star_01.yaml +986 -0
  461. test/new-results/test/parameters/simu/hmm/hmms/IGHJ4_star_02.yaml +306 -306
  462. test/new-results/test/parameters/simu/hmm/hmms/IGHJ6_star_02.yaml +284 -284
  463. test/new-results/test/parameters/simu/hmm/hmms/IGHV1-18_star_01.yaml +4484 -0
  464. test/new-results/test/parameters/simu/hmm/hmms/IGHV3-23_star_01.yaml +4484 -0
  465. test/new-results/test/parameters/simu/hmm/hmms/IGHV3-66_star_02.yaml +1191 -1191
  466. test/new-results/test/parameters/simu/hmm/hmms/IGHV3-7_star_05.yaml +2 -2
  467. test/new-results/test/parameters/simu/hmm/hmms/IGHV4-4_star_09.yaml +4438 -0
  468. test/new-results/test/parameters/simu/hmm/hmms/IGHV4-61_star_01.yaml +4529 -0
  469. test/new-results/test/parameters/simu/hmm/hmms/IGHV5-51_star_01.yaml +4484 -0
  470. test/new-results/test/parameters/simu/hmm/j-mean-mute-freqs.csv +5 -5
  471. test/new-results/test/parameters/simu/hmm/j-mean-n-muted.csv +4 -4
  472. test/new-results/test/parameters/simu/hmm/j_gene-dj_insertion-probs.csv +9 -2
  473. test/new-results/test/parameters/simu/hmm/j_gene-j_3p_del-probs.csv +2 -1
  474. test/new-results/test/parameters/simu/hmm/j_gene-j_5p_del-probs.csv +7 -2
  475. test/new-results/test/parameters/simu/hmm/j_gene-probs.csv +2 -1
  476. test/new-results/test/parameters/simu/hmm/jf_insertion-probs.csv +1 -1
  477. test/new-results/test/parameters/simu/hmm/mute-freqs/IGHD1-20_star_01.csv +9 -0
  478. test/new-results/test/parameters/simu/hmm/mute-freqs/IGHD3-16_star_02.csv +30 -0
  479. test/new-results/test/parameters/simu/hmm/mute-freqs/IGHD3-22_star_01.csv +32 -0
  480. test/new-results/test/parameters/simu/hmm/mute-freqs/IGHD6-13_star_01.csv +16 -13
  481. test/new-results/test/parameters/simu/hmm/mute-freqs/IGHD6-19_star_01.csv +22 -0
  482. test/new-results/test/parameters/simu/hmm/mute-freqs/IGHJ1_star_01.csv +50 -0
  483. test/new-results/test/parameters/simu/hmm/mute-freqs/IGHJ4_star_02.csv +44 -40
  484. test/new-results/test/parameters/simu/hmm/mute-freqs/IGHJ6_star_02.csv +2 -0
  485. test/new-results/test/parameters/simu/hmm/mute-freqs/IGHV1-18_star_01.csv +297 -0
  486. test/new-results/test/parameters/simu/hmm/mute-freqs/IGHV3-23_star_01.csv +297 -0
  487. test/new-results/test/parameters/simu/hmm/mute-freqs/IGHV3-66_star_02.csv +293 -291
  488. test/new-results/test/parameters/simu/hmm/mute-freqs/IGHV4-4_star_09.csv +291 -0
  489. test/new-results/test/parameters/simu/hmm/mute-freqs/IGHV4-61_star_01.csv +300 -0
  490. test/new-results/test/parameters/simu/hmm/mute-freqs/IGHV5-51_star_01.csv +296 -0
  491. test/new-results/test/parameters/simu/hmm/seq_content.csv +4 -4
  492. test/new-results/test/parameters/simu/hmm/v-mean-mute-freqs.csv +3 -3
  493. test/new-results/test/parameters/simu/hmm/v-mean-n-muted.csv +7 -7
  494. test/new-results/test/parameters/simu/hmm/v_gene-probs.csv +6 -1
  495. test/new-results/test/parameters/simu/hmm/v_gene-v_3p_del-probs.csv +7 -1
  496. test/new-results/test/parameters/simu/hmm/v_gene-v_5p_del-probs.csv +6 -1
  497. test/new-results/test/parameters/simu/hmm/vd_insertion_content.csv +4 -4
  498. test/new-results/test/parameters/simu/sw/all-mean-mute-freqs.csv +3 -3
  499. test/new-results/test/parameters/simu/sw/all-mean-n-muted.csv +8 -8
  500. test/new-results/test/parameters/simu/sw/all-probs.csv +9 -1
  501. test/new-results/test/parameters/simu/sw/cluster_size.csv +1 -1
  502. test/new-results/test/parameters/simu/sw/d-mean-mute-freqs.csv +5 -5
  503. test/new-results/test/parameters/simu/sw/d-mean-n-muted.csv +3 -3
  504. test/new-results/test/parameters/simu/sw/d_gene-d_3p_del-probs.csv +7 -1
  505. test/new-results/test/parameters/simu/sw/d_gene-d_5p_del-probs.csv +7 -1
  506. test/new-results/test/parameters/simu/sw/d_gene-probs.csv +5 -1
  507. test/new-results/test/parameters/simu/sw/d_gene-vd_insertion-probs.csv +8 -1
  508. test/new-results/test/parameters/simu/sw/dj_insertion_content.csv +4 -4
  509. test/new-results/test/parameters/simu/sw/fv_insertion-probs.csv +1 -1
  510. test/new-results/test/parameters/simu/sw/germline-sets/igh/extras.csv +6 -0
  511. test/new-results/test/parameters/simu/sw/germline-sets/igh/ighd.fasta +8 -0
  512. test/new-results/test/parameters/simu/sw/germline-sets/igh/ighj.fasta +2 -0
  513. test/new-results/test/parameters/simu/sw/germline-sets/igh/ighv.fasta +10 -0
  514. test/new-results/test/parameters/simu/sw/hmms/IGHD1-20_star_01.yaml +449 -0
  515. test/new-results/test/parameters/simu/sw/hmms/IGHD3-16_star_02.yaml +870 -0
  516. test/new-results/test/parameters/simu/sw/hmms/IGHD3-22_star_01.yaml +744 -0
  517. test/new-results/test/parameters/simu/sw/hmms/IGHD6-13_star_01.yaml +267 -268
  518. test/new-results/test/parameters/simu/sw/hmms/IGHD6-19_star_01.yaml +534 -0
  519. test/new-results/test/parameters/simu/sw/hmms/IGHJ1_star_01.yaml +986 -0
  520. test/new-results/test/parameters/simu/sw/hmms/IGHJ4_star_02.yaml +306 -306
  521. test/new-results/test/parameters/simu/sw/hmms/IGHJ6_star_02.yaml +22 -22
  522. test/new-results/test/parameters/simu/sw/hmms/IGHV1-18_star_01.yaml +4484 -0
  523. test/new-results/test/parameters/simu/sw/hmms/IGHV3-23_star_01.yaml +4484 -0
  524. test/new-results/test/parameters/simu/sw/hmms/IGHV3-66_star_02.yaml +1191 -1191
  525. test/new-results/test/parameters/simu/sw/hmms/IGHV3-7_star_05.yaml +2 -2
  526. test/new-results/test/parameters/simu/sw/hmms/IGHV4-4_star_09.yaml +4438 -0
  527. test/new-results/test/parameters/simu/sw/hmms/IGHV4-61_star_01.yaml +4529 -0
  528. test/new-results/test/parameters/simu/sw/hmms/IGHV5-51_star_01.yaml +4484 -0
  529. test/new-results/test/parameters/simu/sw/j-mean-mute-freqs.csv +4 -4
  530. test/new-results/test/parameters/simu/sw/j-mean-n-muted.csv +3 -3
  531. test/new-results/test/parameters/simu/sw/j_gene-dj_insertion-probs.csv +7 -1
  532. test/new-results/test/parameters/simu/sw/j_gene-j_3p_del-probs.csv +2 -1
  533. test/new-results/test/parameters/simu/sw/j_gene-j_5p_del-probs.csv +7 -1
  534. test/new-results/test/parameters/simu/sw/j_gene-probs.csv +2 -1
  535. test/new-results/test/parameters/simu/sw/jf_insertion-probs.csv +1 -1
  536. test/new-results/test/parameters/simu/sw/mute-freqs/IGHD1-20_star_01.csv +9 -0
  537. test/new-results/test/parameters/simu/sw/mute-freqs/IGHD3-16_star_02.csv +30 -0
  538. test/new-results/test/parameters/simu/sw/mute-freqs/IGHD3-22_star_01.csv +32 -0
  539. test/new-results/test/parameters/simu/sw/mute-freqs/IGHD6-13_star_01.csv +16 -13
  540. test/new-results/test/parameters/simu/sw/mute-freqs/IGHD6-19_star_01.csv +20 -0
  541. test/new-results/test/parameters/simu/sw/mute-freqs/IGHJ1_star_01.csv +50 -0
  542. test/new-results/test/parameters/simu/sw/mute-freqs/IGHJ4_star_02.csv +48 -40
  543. test/new-results/test/parameters/simu/sw/mute-freqs/IGHV1-18_star_01.csv +297 -0
  544. test/new-results/test/parameters/simu/sw/mute-freqs/IGHV3-23_star_01.csv +297 -0
  545. test/new-results/test/parameters/simu/sw/mute-freqs/IGHV3-66_star_02.csv +293 -291
  546. test/new-results/test/parameters/simu/sw/mute-freqs/IGHV4-4_star_09.csv +291 -0
  547. test/new-results/test/parameters/simu/sw/mute-freqs/IGHV4-61_star_01.csv +300 -0
  548. test/new-results/test/parameters/simu/sw/mute-freqs/IGHV5-51_star_01.csv +296 -0
  549. test/new-results/test/parameters/simu/sw/seq_content.csv +4 -4
  550. test/new-results/test/parameters/simu/sw/v-mean-mute-freqs.csv +3 -3
  551. test/new-results/test/parameters/simu/sw/v-mean-n-muted.csv +7 -7
  552. test/new-results/test/parameters/simu/sw/v_gene-probs.csv +6 -1
  553. test/new-results/test/parameters/simu/sw/v_gene-v_3p_del-probs.csv +7 -1
  554. test/new-results/test/parameters/simu/sw/v_gene-v_5p_del-probs.csv +6 -1
  555. test/new-results/test/parameters/simu/sw/vd_insertion_content.csv +4 -4
  556. test/new-results/test/parameters/simu/sw-cache.yaml +1 -1
  557. test/new-results/test/parameters/simu/true/all-mean-mute-freqs.csv +43 -0
  558. test/new-results/test/parameters/simu/true/all-mean-n-muted.csv +155 -0
  559. test/new-results/test/parameters/simu/true/all-probs.csv +10 -0
  560. test/new-results/test/parameters/simu/true/cluster_size.csv +7 -0
  561. test/new-results/test/parameters/simu/true/d-mean-mute-freqs.csv +43 -0
  562. test/new-results/test/parameters/simu/true/d-mean-n-muted.csv +14 -0
  563. test/new-results/test/parameters/simu/true/d_gene-d_3p_del-probs.csv +9 -0
  564. test/new-results/test/parameters/simu/true/d_gene-d_5p_del-probs.csv +10 -0
  565. test/new-results/test/parameters/simu/true/d_gene-probs.csv +7 -0
  566. test/new-results/test/parameters/simu/true/d_gene-vd_insertion-probs.csv +10 -0
  567. test/new-results/test/parameters/simu/true/dj_insertion_content.csv +5 -0
  568. test/new-results/test/parameters/simu/true/fv_insertion-probs.csv +2 -0
  569. test/new-results/test/parameters/simu/true/germline-sets/igh/extras.csv +11 -0
  570. test/new-results/test/parameters/simu/true/germline-sets/igh/ighd.fasta +12 -0
  571. test/new-results/test/parameters/simu/true/germline-sets/igh/ighj.fasta +6 -0
  572. test/new-results/test/parameters/simu/true/germline-sets/igh/ighv.fasta +14 -0
  573. test/new-results/test/parameters/simu/true/j-mean-mute-freqs.csv +43 -0
  574. test/new-results/test/parameters/simu/true/j-mean-n-muted.csv +25 -0
  575. test/new-results/test/parameters/simu/true/j_gene-dj_insertion-probs.csv +7 -0
  576. test/new-results/test/parameters/simu/true/j_gene-j_3p_del-probs.csv +4 -0
  577. test/new-results/test/parameters/simu/true/j_gene-j_5p_del-probs.csv +9 -0
  578. test/new-results/test/parameters/simu/true/j_gene-probs.csv +4 -0
  579. test/new-results/test/parameters/simu/true/jf_insertion-probs.csv +2 -0
  580. test/new-results/test/parameters/simu/true/mute-freqs/IGHD1-20_star_01.csv +8 -0
  581. test/new-results/test/parameters/simu/true/mute-freqs/IGHD3-16_star_02.csv +30 -0
  582. test/new-results/test/parameters/simu/true/mute-freqs/IGHD3-22_star_01.csv +32 -0
  583. test/new-results/test/parameters/simu/true/mute-freqs/IGHD6-13_star_01.csv +22 -0
  584. test/new-results/test/parameters/simu/true/mute-freqs/IGHD6-19_star_01.csv +22 -0
  585. test/new-results/test/parameters/simu/true/mute-freqs/IGHD6-6_star_01.csv +13 -0
  586. test/new-results/test/parameters/simu/true/mute-freqs/IGHJ1_star_01.csv +50 -0
  587. test/new-results/test/parameters/simu/true/mute-freqs/IGHJ4_star_02.csv +45 -0
  588. test/new-results/test/parameters/simu/true/mute-freqs/IGHJ6_star_02.csv +47 -0
  589. test/new-results/test/parameters/simu/true/mute-freqs/IGHV1-18_star_01.csv +297 -0
  590. test/new-results/test/parameters/simu/true/mute-freqs/IGHV3-23_star_01.csv +297 -0
  591. test/new-results/test/parameters/simu/true/mute-freqs/IGHV3-66_star_02.csv +294 -0
  592. test/new-results/test/parameters/simu/true/mute-freqs/IGHV3-7_star_05.csv +297 -0
  593. test/new-results/test/parameters/simu/true/mute-freqs/IGHV4-4_star_09.csv +291 -0
  594. test/new-results/test/parameters/simu/true/mute-freqs/IGHV4-61_star_01.csv +300 -0
  595. test/new-results/test/parameters/simu/true/mute-freqs/IGHV5-51_star_01.csv +296 -0
  596. test/new-results/test/parameters/simu/true/seq_content.csv +5 -0
  597. test/new-results/test/parameters/simu/true/v-mean-mute-freqs.csv +43 -0
  598. test/new-results/test/parameters/simu/true/v-mean-n-muted.csv +122 -0
  599. test/new-results/test/parameters/simu/true/v_gene-probs.csv +8 -0
  600. test/new-results/test/parameters/simu/true/v_gene-v_3p_del-probs.csv +9 -0
  601. test/new-results/test/parameters/simu/true/v_gene-v_5p_del-probs.csv +8 -0
  602. test/new-results/test/parameters/simu/true/vd_insertion_content.csv +5 -0
  603. test/new-results/test.log +203 -24
  604. test/new-results/vsearch-partition-new-simu.yaml +1 -0
  605. test/paired/new-results/partition-new-simu/fasttree/iclust-0/log +3 -3
  606. test/paired/new-results/partition-new-simu/fasttree/iclust-1/log +5 -5
  607. test/paired/new-results/partition-new-simu/fasttree/iclust-2/log +2 -2
  608. test/paired/new-results/partition-new-simu/igh+igl/partition-igl/fasttree/iclust-0/log +1 -1
  609. test/paired/new-results/partition-new-simu-annotation-performance/plots/flcount-matrix.svg +107 -107
  610. test/paired/new-results/partition-new-simu-annotation-performance/plots/func-non-func-per-drop-log.svg +83 -83
  611. test/paired/new-results/partition-new-simu-annotation-performance/plots/func-non-func-per-drop.svg +61 -61
  612. test/paired/new-results/partition-new-simu-annotation-performance/plots/paired-seqs-per-seq-after.svg +18 -18
  613. test/paired/new-results/partition-new-simu-annotation-performance/plots/paired-seqs-per-seq-before.svg +24 -24
  614. test/paired/new-results/partition-new-simu-annotation-performance/plots/pseq-matrix.svg +35 -35
  615. test/paired/new-results/partition-new-simu-annotation-performance/plots/seqs-per-droplet.svg +22 -22
  616. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-correct-family.svg +45 -45
  617. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-correct.svg +45 -45
  618. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-mispaired.svg +45 -45
  619. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-multiple.svg +15 -15
  620. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-near-family.svg +15 -15
  621. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-total.svg +47 -47
  622. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-unpaired.svg +48 -48
  623. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance.svg +27 -27
  624. test/paired/new-results/run-times.csv +6 -6
  625. test/paired/new-results/subset-partition-new-simu/isub-0/partition.log +43 -43
  626. test/paired/new-results/subset-partition-new-simu/isub-1/partition.log +40 -40
  627. test/paired/new-results/subset-partition-new-simu/merged-partition.log +25 -25
  628. test/paired/new-results/subset-partition-new-simu/merged-subsets/parameters/igh/sw-cache.yaml +1 -1
  629. test/paired/new-results/subset-partition-new-simu/merged-subsets/parameters/igk/sw-cache.yaml +1 -1
  630. test/paired/new-results/subset-partition-new-simu/merged-subsets/parameters/igl/sw-cache.yaml +1 -1
  631. test/paired/new-results/test.log +135 -135
  632. test/test.py +6 -0
  633. test/trees.nwk +100 -0
  634. {partis_bcr-1.0.11.post1.dev1.data → partis_bcr-1.0.11.post1.dev7.data}/scripts/cf-alleles.py +0 -0
  635. {partis_bcr-1.0.11.post1.dev1.data → partis_bcr-1.0.11.post1.dev7.data}/scripts/cf-germlines.py +0 -0
  636. {partis_bcr-1.0.11.post1.dev1.data → partis_bcr-1.0.11.post1.dev7.data}/scripts/compare-plotdirs.py +0 -0
  637. {partis_bcr-1.0.11.post1.dev1.data → partis_bcr-1.0.11.post1.dev7.data}/scripts/extract-pairing-info.py +0 -0
  638. {partis_bcr-1.0.11.post1.dev1.data → partis_bcr-1.0.11.post1.dev7.data}/scripts/gctree-run.py +0 -0
  639. {partis_bcr-1.0.11.post1.dev1.data → partis_bcr-1.0.11.post1.dev7.data}/scripts/get-naive-probabilities.py +0 -0
  640. {partis_bcr-1.0.11.post1.dev1.data → partis_bcr-1.0.11.post1.dev7.data}/scripts/parse-output.py +0 -0
  641. {partis_bcr-1.0.11.post1.dev1.data → partis_bcr-1.0.11.post1.dev7.data}/scripts/split-loci.py +0 -0
  642. {partis_bcr-1.0.11.post1.dev1.dist-info → partis_bcr-1.0.11.post1.dev7.dist-info}/WHEEL +0 -0
  643. {partis_bcr-1.0.11.post1.dev1.dist-info → partis_bcr-1.0.11.post1.dev7.dist-info}/entry_points.txt +0 -0
  644. {partis_bcr-1.0.11.post1.dev1.dist-info → partis_bcr-1.0.11.post1.dev7.dist-info}/licenses/COPYING +0 -0
  645. {partis_bcr-1.0.11.post1.dev1.dist-info → partis_bcr-1.0.11.post1.dev7.dist-info}/top_level.txt +0 -0
test/new-results/test/parameters/data/hmm/hmms/IGHV1-2_star_02.yaml ADDED
@@ -0,0 +1,4484 @@
1
+ !!python/object:python.hmmwriter.HMM
2
+ extras:
3
+ gene_prob: 0.17391304347826086
4
+ overall_mute_freq: 0.08760869565217394
5
+ per_gene_mute_freq: 0.14022524214108337
6
+ name: IGHV1-2_star_02
7
+ states:
8
+ - !!python/object:python.hmmwriter.State
9
+ emissions: null
10
+ extras: {}
11
+ name: init
12
+ transitions:
13
+ IGHV1-2_star_02_0: 0.6666666666666666
14
+ insert_left_N: 0.33333333333333337
15
+ - !!python/object:python.hmmwriter.State
16
+ emissions:
17
+ probs:
18
+ A: 0.25
19
+ C: 0.25
20
+ G: 0.25
21
+ T: 0.25
22
+ track: nukes
23
+ extras:
24
+ ambiguous_char: N
25
+ ambiguous_emission_prob: 0.25
26
+ germline: N
27
+ name: insert_left_N
28
+ transitions:
29
+ IGHV1-2_star_02_0: 0.6666666666666666
30
+ insert_left_N: 0.33333333333333337
31
+ - !!python/object:python.hmmwriter.State
32
+ emissions:
33
+ probs:
34
+ A: 0.0356608468248
35
+ C: 0.8930174595256
36
+ G: 0.0356608468248
37
+ T: 0.0356608468248
38
+ track: nukes
39
+ extras:
40
+ ambiguous_char: N
41
+ ambiguous_emission_prob: 0.25
42
+ germline: C
43
+ name: IGHV1-2_star_02_0
44
+ transitions:
45
+ IGHV1-2_star_02_1: 1.0
46
+ - !!python/object:python.hmmwriter.State
47
+ emissions:
48
+ probs:
49
+ A: 0.8930174595256
50
+ C: 0.0356608468248
51
+ G: 0.0356608468248
52
+ T: 0.0356608468248
53
+ track: nukes
54
+ extras:
55
+ ambiguous_char: N
56
+ ambiguous_emission_prob: 0.25
57
+ germline: A
58
+ name: IGHV1-2_star_02_1
59
+ transitions:
60
+ IGHV1-2_star_02_2: 1.0
61
+ - !!python/object:python.hmmwriter.State
62
+ emissions:
63
+ probs:
64
+ A: 0.08
65
+ C: 0.04
66
+ G: 0.84
67
+ T: 0.04
68
+ track: nukes
69
+ extras:
70
+ ambiguous_char: N
71
+ ambiguous_emission_prob: 0.25
72
+ germline: G
73
+ name: IGHV1-2_star_02_2
74
+ transitions:
75
+ IGHV1-2_star_02_3: 1.0
76
+ - !!python/object:python.hmmwriter.State
77
+ emissions:
78
+ probs:
79
+ A: 0.0356608468248
80
+ C: 0.0356608468248
81
+ G: 0.8930174595256
82
+ T: 0.0356608468248
83
+ track: nukes
84
+ extras:
85
+ ambiguous_char: N
86
+ ambiguous_emission_prob: 0.25
87
+ germline: G
88
+ name: IGHV1-2_star_02_3
89
+ transitions:
90
+ IGHV1-2_star_02_4: 1.0
91
+ - !!python/object:python.hmmwriter.State
92
+ emissions:
93
+ probs:
94
+ A: 0.0356608468248
95
+ C: 0.0356608468248
96
+ G: 0.0356608468248
97
+ T: 0.8930174595256
98
+ track: nukes
99
+ extras:
100
+ ambiguous_char: N
101
+ ambiguous_emission_prob: 0.25
102
+ germline: T
103
+ name: IGHV1-2_star_02_4
104
+ transitions:
105
+ IGHV1-2_star_02_5: 1.0
106
+ - !!python/object:python.hmmwriter.State
107
+ emissions:
108
+ probs:
109
+ A: 0.05
110
+ C: 0.1
111
+ G: 0.8
112
+ T: 0.05
113
+ track: nukes
114
+ extras:
115
+ ambiguous_char: N
116
+ ambiguous_emission_prob: 0.25
117
+ germline: G
118
+ name: IGHV1-2_star_02_5
119
+ transitions:
120
+ IGHV1-2_star_02_6: 1.0
121
+ - !!python/object:python.hmmwriter.State
122
+ emissions:
123
+ probs:
124
+ A: 0.0356608468248
125
+ C: 0.8930174595256
126
+ G: 0.0356608468248
127
+ T: 0.0356608468248
128
+ track: nukes
129
+ extras:
130
+ ambiguous_char: N
131
+ ambiguous_emission_prob: 0.25
132
+ germline: C
133
+ name: IGHV1-2_star_02_6
134
+ transitions:
135
+ IGHV1-2_star_02_7: 1.0
136
+ - !!python/object:python.hmmwriter.State
137
+ emissions:
138
+ probs:
139
+ A: 0.8
140
+ C: 0.03333333333333333
141
+ G: 0.13333333333333333
142
+ T: 0.03333333333333333
143
+ track: nukes
144
+ extras:
145
+ ambiguous_char: N
146
+ ambiguous_emission_prob: 0.25
147
+ germline: A
148
+ name: IGHV1-2_star_02_7
149
+ transitions:
150
+ IGHV1-2_star_02_8: 1.0
151
+ - !!python/object:python.hmmwriter.State
152
+ emissions:
153
+ probs:
154
+ A: 0.1
155
+ C: 0.05
156
+ G: 0.8
157
+ T: 0.05
158
+ track: nukes
159
+ extras:
160
+ ambiguous_char: N
161
+ ambiguous_emission_prob: 0.25
162
+ germline: G
163
+ name: IGHV1-2_star_02_8
164
+ transitions:
165
+ IGHV1-2_star_02_9: 1.0
166
+ - !!python/object:python.hmmwriter.State
167
+ emissions:
168
+ probs:
169
+ A: 0.05
170
+ C: 0.8
171
+ G: 0.1
172
+ T: 0.05
173
+ track: nukes
174
+ extras:
175
+ ambiguous_char: N
176
+ ambiguous_emission_prob: 0.25
177
+ germline: C
178
+ name: IGHV1-2_star_02_9
179
+ transitions:
180
+ IGHV1-2_star_02_10: 1.0
181
+ - !!python/object:python.hmmwriter.State
182
+ emissions:
183
+ probs:
184
+ A: 0.0356608468248
185
+ C: 0.0356608468248
186
+ G: 0.0356608468248
187
+ T: 0.8930174595256
188
+ track: nukes
189
+ extras:
190
+ ambiguous_char: N
191
+ ambiguous_emission_prob: 0.25
192
+ germline: T
193
+ name: IGHV1-2_star_02_10
194
+ transitions:
195
+ IGHV1-2_star_02_11: 1.0
196
+ - !!python/object:python.hmmwriter.State
197
+ emissions:
198
+ probs:
199
+ A: 0.03666666666666667
200
+ C: 0.03666666666666667
201
+ G: 0.89
202
+ T: 0.03666666666666667
203
+ track: nukes
204
+ extras:
205
+ ambiguous_char: N
206
+ ambiguous_emission_prob: 0.25
207
+ germline: G
208
+ name: IGHV1-2_star_02_11
209
+ transitions:
210
+ IGHV1-2_star_02_12: 1.0
211
+ - !!python/object:python.hmmwriter.State
212
+ emissions:
213
+ probs:
214
+ A: 0.1
215
+ C: 0.05
216
+ G: 0.8
217
+ T: 0.05
218
+ track: nukes
219
+ extras:
220
+ ambiguous_char: N
221
+ ambiguous_emission_prob: 0.25
222
+ germline: G
223
+ name: IGHV1-2_star_02_12
224
+ transitions:
225
+ IGHV1-2_star_02_13: 1.0
226
+ - !!python/object:python.hmmwriter.State
227
+ emissions:
228
+ probs:
229
+ A: 0.03666666666666667
230
+ C: 0.03666666666666667
231
+ G: 0.03666666666666667
232
+ T: 0.89
233
+ track: nukes
234
+ extras:
235
+ ambiguous_char: N
236
+ ambiguous_emission_prob: 0.25
237
+ germline: T
238
+ name: IGHV1-2_star_02_13
239
+ transitions:
240
+ IGHV1-2_star_02_14: 1.0
241
+ - !!python/object:python.hmmwriter.State
242
+ emissions:
243
+ probs:
244
+ A: 0.12
245
+ C: 0.04000000000000001
246
+ G: 0.8
247
+ T: 0.04000000000000001
248
+ track: nukes
249
+ extras:
250
+ ambiguous_char: N
251
+ ambiguous_emission_prob: 0.25
252
+ germline: G
253
+ name: IGHV1-2_star_02_14
254
+ transitions:
255
+ IGHV1-2_star_02_15: 1.0
256
+ - !!python/object:python.hmmwriter.State
257
+ emissions:
258
+ probs:
259
+ A: 0.0356608468248
260
+ C: 0.8930174595256
261
+ G: 0.0356608468248
262
+ T: 0.0356608468248
263
+ track: nukes
264
+ extras:
265
+ ambiguous_char: N
266
+ ambiguous_emission_prob: 0.25
267
+ germline: C
268
+ name: IGHV1-2_star_02_15
269
+ transitions:
270
+ IGHV1-2_star_02_16: 1.0
271
+ - !!python/object:python.hmmwriter.State
272
+ emissions:
273
+ probs:
274
+ A: 0.8930174595256
275
+ C: 0.0356608468248
276
+ G: 0.0356608468248
277
+ T: 0.0356608468248
278
+ track: nukes
279
+ extras:
280
+ ambiguous_char: N
281
+ ambiguous_emission_prob: 0.25
282
+ germline: A
283
+ name: IGHV1-2_star_02_16
284
+ transitions:
285
+ IGHV1-2_star_02_17: 1.0
286
+ - !!python/object:python.hmmwriter.State
287
+ emissions:
288
+ probs:
289
+ A: 0.03666666666666667
290
+ C: 0.03666666666666667
291
+ G: 0.89
292
+ T: 0.03666666666666667
293
+ track: nukes
294
+ extras:
295
+ ambiguous_char: N
296
+ ambiguous_emission_prob: 0.25
297
+ germline: G
298
+ name: IGHV1-2_star_02_17
299
+ transitions:
300
+ IGHV1-2_star_02_18: 1.0
301
+ - !!python/object:python.hmmwriter.State
302
+ emissions:
303
+ probs:
304
+ A: 0.0356608468248
305
+ C: 0.0356608468248
306
+ G: 0.0356608468248
307
+ T: 0.8930174595256
308
+ track: nukes
309
+ extras:
310
+ ambiguous_char: N
311
+ ambiguous_emission_prob: 0.25
312
+ germline: T
313
+ name: IGHV1-2_star_02_18
314
+ transitions:
315
+ IGHV1-2_star_02_19: 1.0
316
+ - !!python/object:python.hmmwriter.State
317
+ emissions:
318
+ probs:
319
+ A: 0.03666666666666667
320
+ C: 0.89
321
+ G: 0.03666666666666667
322
+ T: 0.03666666666666667
323
+ track: nukes
324
+ extras:
325
+ ambiguous_char: N
326
+ ambiguous_emission_prob: 0.25
327
+ germline: C
328
+ name: IGHV1-2_star_02_19
329
+ transitions:
330
+ IGHV1-2_star_02_20: 1.0
331
+ - !!python/object:python.hmmwriter.State
332
+ emissions:
333
+ probs:
334
+ A: 0.0356608468248
335
+ C: 0.0356608468248
336
+ G: 0.0356608468248
337
+ T: 0.8930174595256
338
+ track: nukes
339
+ extras:
340
+ ambiguous_char: N
341
+ ambiguous_emission_prob: 0.25
342
+ germline: T
343
+ name: IGHV1-2_star_02_20
344
+ transitions:
345
+ IGHV1-2_star_02_21: 1.0
346
+ - !!python/object:python.hmmwriter.State
347
+ emissions:
348
+ probs:
349
+ A: 0.0356608468248
350
+ C: 0.0356608468248
351
+ G: 0.8930174595256
352
+ T: 0.0356608468248
353
+ track: nukes
354
+ extras:
355
+ ambiguous_char: N
356
+ ambiguous_emission_prob: 0.25
357
+ germline: G
358
+ name: IGHV1-2_star_02_21
359
+ transitions:
360
+ IGHV1-2_star_02_22: 1.0
361
+ - !!python/object:python.hmmwriter.State
362
+ emissions:
363
+ probs:
364
+ A: 0.0356608468248
365
+ C: 0.0356608468248
366
+ G: 0.8930174595256
367
+ T: 0.0356608468248
368
+ track: nukes
369
+ extras:
370
+ ambiguous_char: N
371
+ ambiguous_emission_prob: 0.25
372
+ germline: G
373
+ name: IGHV1-2_star_02_22
374
+ transitions:
375
+ IGHV1-2_star_02_23: 1.0
376
+ - !!python/object:python.hmmwriter.State
377
+ emissions:
378
+ probs:
379
+ A: 0.03666666666666667
380
+ C: 0.03666666666666667
381
+ G: 0.89
382
+ T: 0.03666666666666667
383
+ track: nukes
384
+ extras:
385
+ ambiguous_char: N
386
+ ambiguous_emission_prob: 0.25
387
+ germline: G
388
+ name: IGHV1-2_star_02_23
389
+ transitions:
390
+ IGHV1-2_star_02_24: 1.0
391
+ - !!python/object:python.hmmwriter.State
392
+ emissions:
393
+ probs:
394
+ A: 0.03333333333333333
395
+ C: 0.03333333333333333
396
+ G: 0.8
397
+ T: 0.13333333333333333
398
+ track: nukes
399
+ extras:
400
+ ambiguous_char: N
401
+ ambiguous_emission_prob: 0.25
402
+ germline: G
403
+ name: IGHV1-2_star_02_24
404
+ transitions:
405
+ IGHV1-2_star_02_25: 1.0
406
+ - !!python/object:python.hmmwriter.State
407
+ emissions:
408
+ probs:
409
+ A: 0.0356608468248
410
+ C: 0.8930174595256
411
+ G: 0.0356608468248
412
+ T: 0.0356608468248
413
+ track: nukes
414
+ extras:
415
+ ambiguous_char: N
416
+ ambiguous_emission_prob: 0.25
417
+ germline: C
418
+ name: IGHV1-2_star_02_25
419
+ transitions:
420
+ IGHV1-2_star_02_26: 1.0
421
+ - !!python/object:python.hmmwriter.State
422
+ emissions:
423
+ probs:
424
+ A: 0.03666666666666667
425
+ C: 0.03666666666666667
426
+ G: 0.03666666666666667
427
+ T: 0.89
428
+ track: nukes
429
+ extras:
430
+ ambiguous_char: N
431
+ ambiguous_emission_prob: 0.25
432
+ germline: T
433
+ name: IGHV1-2_star_02_26
434
+ transitions:
435
+ IGHV1-2_star_02_27: 1.0
436
+ - !!python/object:python.hmmwriter.State
437
+ emissions:
438
+ probs:
439
+ A: 0.04000000000000001
440
+ C: 0.08000000000000002
441
+ G: 0.8
442
+ T: 0.08000000000000002
443
+ track: nukes
444
+ extras:
445
+ ambiguous_char: N
446
+ ambiguous_emission_prob: 0.25
447
+ germline: G
448
+ name: IGHV1-2_star_02_27
449
+ transitions:
450
+ IGHV1-2_star_02_28: 1.0
451
+ - !!python/object:python.hmmwriter.State
452
+ emissions:
453
+ probs:
454
+ A: 0.8930174595256
455
+ C: 0.0356608468248
456
+ G: 0.0356608468248
457
+ T: 0.0356608468248
458
+ track: nukes
459
+ extras:
460
+ ambiguous_char: N
461
+ ambiguous_emission_prob: 0.25
462
+ germline: A
463
+ name: IGHV1-2_star_02_28
464
+ transitions:
465
+ IGHV1-2_star_02_29: 1.0
466
+ - !!python/object:python.hmmwriter.State
467
+ emissions:
468
+ probs:
469
+ A: 0.08
470
+ C: 0.04
471
+ G: 0.84
472
+ T: 0.04
473
+ track: nukes
474
+ extras:
475
+ ambiguous_char: N
476
+ ambiguous_emission_prob: 0.25
477
+ germline: G
478
+ name: IGHV1-2_star_02_29
479
+ transitions:
480
+ IGHV1-2_star_02_30: 1.0
481
+ - !!python/object:python.hmmwriter.State
482
+ emissions:
483
+ probs:
484
+ A: 0.05
485
+ C: 0.1
486
+ G: 0.8
487
+ T: 0.05
488
+ track: nukes
489
+ extras:
490
+ ambiguous_char: N
491
+ ambiguous_emission_prob: 0.25
492
+ germline: G
493
+ name: IGHV1-2_star_02_30
494
+ transitions:
495
+ IGHV1-2_star_02_31: 1.0
496
+ - !!python/object:python.hmmwriter.State
497
+ emissions:
498
+ probs:
499
+ A: 0.0356608468248
500
+ C: 0.0356608468248
501
+ G: 0.0356608468248
502
+ T: 0.8930174595256
503
+ track: nukes
504
+ extras:
505
+ ambiguous_char: N
506
+ ambiguous_emission_prob: 0.25
507
+ germline: T
508
+ name: IGHV1-2_star_02_31
509
+ transitions:
510
+ IGHV1-2_star_02_32: 1.0
511
+ - !!python/object:python.hmmwriter.State
512
+ emissions:
513
+ probs:
514
+ A: 0.05
515
+ C: 0.1
516
+ G: 0.8
517
+ T: 0.05
518
+ track: nukes
519
+ extras:
520
+ ambiguous_char: N
521
+ ambiguous_emission_prob: 0.25
522
+ germline: G
523
+ name: IGHV1-2_star_02_32
524
+ transitions:
525
+ IGHV1-2_star_02_33: 1.0
526
+ - !!python/object:python.hmmwriter.State
527
+ emissions:
528
+ probs:
529
+ A: 0.84
530
+ C: 0.08
531
+ G: 0.04
532
+ T: 0.04
533
+ track: nukes
534
+ extras:
535
+ ambiguous_char: N
536
+ ambiguous_emission_prob: 0.25
537
+ germline: A
538
+ name: IGHV1-2_star_02_33
539
+ transitions:
540
+ IGHV1-2_star_02_34: 1.0
541
+ - !!python/object:python.hmmwriter.State
542
+ emissions:
543
+ probs:
544
+ A: 0.8930174595256
545
+ C: 0.0356608468248
546
+ G: 0.0356608468248
547
+ T: 0.0356608468248
548
+ track: nukes
549
+ extras:
550
+ ambiguous_char: N
551
+ ambiguous_emission_prob: 0.25
552
+ germline: A
553
+ name: IGHV1-2_star_02_34
554
+ transitions:
555
+ IGHV1-2_star_02_35: 1.0
556
+ - !!python/object:python.hmmwriter.State
557
+ emissions:
558
+ probs:
559
+ A: 0.03666666666666667
560
+ C: 0.03666666666666667
561
+ G: 0.89
562
+ T: 0.03666666666666667
563
+ track: nukes
564
+ extras:
565
+ ambiguous_char: N
566
+ ambiguous_emission_prob: 0.25
567
+ germline: G
568
+ name: IGHV1-2_star_02_35
569
+ transitions:
570
+ IGHV1-2_star_02_36: 1.0
571
+ - !!python/object:python.hmmwriter.State
572
+ emissions:
573
+ probs:
574
+ A: 0.8930174595256
575
+ C: 0.0356608468248
576
+ G: 0.0356608468248
577
+ T: 0.0356608468248
578
+ track: nukes
579
+ extras:
580
+ ambiguous_char: N
581
+ ambiguous_emission_prob: 0.25
582
+ germline: A
583
+ name: IGHV1-2_star_02_36
584
+ transitions:
585
+ IGHV1-2_star_02_37: 1.0
586
+ - !!python/object:python.hmmwriter.State
587
+ emissions:
588
+ probs:
589
+ A: 0.8
590
+ C: 0.08000000000000002
591
+ G: 0.08000000000000002
592
+ T: 0.04000000000000001
593
+ track: nukes
594
+ extras:
595
+ ambiguous_char: N
596
+ ambiguous_emission_prob: 0.25
597
+ germline: A
598
+ name: IGHV1-2_star_02_37
599
+ transitions:
600
+ IGHV1-2_star_02_38: 1.0
601
+ - !!python/object:python.hmmwriter.State
602
+ emissions:
603
+ probs:
604
+ A: 0.05333333333333333
605
+ C: 0.05333333333333333
606
+ G: 0.84
607
+ T: 0.05333333333333333
608
+ track: nukes
609
+ extras:
610
+ ambiguous_char: N
611
+ ambiguous_emission_prob: 0.25
612
+ germline: G
613
+ name: IGHV1-2_star_02_38
614
+ transitions:
615
+ IGHV1-2_star_02_39: 1.0
616
+ - !!python/object:python.hmmwriter.State
617
+ emissions:
618
+ probs:
619
+ A: 0.0356608468248
620
+ C: 0.8930174595256
621
+ G: 0.0356608468248
622
+ T: 0.0356608468248
623
+ track: nukes
624
+ extras:
625
+ ambiguous_char: N
626
+ ambiguous_emission_prob: 0.25
627
+ germline: C
628
+ name: IGHV1-2_star_02_39
629
+ transitions:
630
+ IGHV1-2_star_02_40: 1.0
631
+ - !!python/object:python.hmmwriter.State
632
+ emissions:
633
+ probs:
634
+ A: 0.0356608468248
635
+ C: 0.8930174595256
636
+ G: 0.0356608468248
637
+ T: 0.0356608468248
638
+ track: nukes
639
+ extras:
640
+ ambiguous_char: N
641
+ ambiguous_emission_prob: 0.25
642
+ germline: C
643
+ name: IGHV1-2_star_02_40
644
+ transitions:
645
+ IGHV1-2_star_02_41: 1.0
646
+ - !!python/object:python.hmmwriter.State
647
+ emissions:
648
+ probs:
649
+ A: 0.0356608468248
650
+ C: 0.0356608468248
651
+ G: 0.0356608468248
652
+ T: 0.8930174595256
653
+ track: nukes
654
+ extras:
655
+ ambiguous_char: N
656
+ ambiguous_emission_prob: 0.25
657
+ germline: T
658
+ name: IGHV1-2_star_02_41
659
+ transitions:
660
+ IGHV1-2_star_02_42: 1.0
661
+ - !!python/object:python.hmmwriter.State
662
+ emissions:
663
+ probs:
664
+ A: 0.0356608468248
665
+ C: 0.0356608468248
666
+ G: 0.8930174595256
667
+ T: 0.0356608468248
668
+ track: nukes
669
+ extras:
670
+ ambiguous_char: N
671
+ ambiguous_emission_prob: 0.25
672
+ germline: G
673
+ name: IGHV1-2_star_02_42
674
+ transitions:
675
+ IGHV1-2_star_02_43: 1.0
676
+ - !!python/object:python.hmmwriter.State
677
+ emissions:
678
+ probs:
679
+ A: 0.0356608468248
680
+ C: 0.0356608468248
681
+ G: 0.8930174595256
682
+ T: 0.0356608468248
683
+ track: nukes
684
+ extras:
685
+ ambiguous_char: N
686
+ ambiguous_emission_prob: 0.25
687
+ germline: G
688
+ name: IGHV1-2_star_02_43
689
+ transitions:
690
+ IGHV1-2_star_02_44: 1.0
691
+ - !!python/object:python.hmmwriter.State
692
+ emissions:
693
+ probs:
694
+ A: 0.0356608468248
695
+ C: 0.0356608468248
696
+ G: 0.8930174595256
697
+ T: 0.0356608468248
698
+ track: nukes
699
+ extras:
700
+ ambiguous_char: N
701
+ ambiguous_emission_prob: 0.25
702
+ germline: G
703
+ name: IGHV1-2_star_02_44
704
+ transitions:
705
+ IGHV1-2_star_02_45: 1.0
706
+ - !!python/object:python.hmmwriter.State
707
+ emissions:
708
+ probs:
709
+ A: 0.03666666666666667
710
+ C: 0.03666666666666667
711
+ G: 0.89
712
+ T: 0.03666666666666667
713
+ track: nukes
714
+ extras:
715
+ ambiguous_char: N
716
+ ambiguous_emission_prob: 0.25
717
+ germline: G
718
+ name: IGHV1-2_star_02_45
719
+ transitions:
720
+ IGHV1-2_star_02_46: 1.0
721
+ - !!python/object:python.hmmwriter.State
722
+ emissions:
723
+ probs:
724
+ A: 0.0356608468248
725
+ C: 0.8930174595256
726
+ G: 0.0356608468248
727
+ T: 0.0356608468248
728
+ track: nukes
729
+ extras:
730
+ ambiguous_char: N
731
+ ambiguous_emission_prob: 0.25
732
+ germline: C
733
+ name: IGHV1-2_star_02_46
734
+ transitions:
735
+ IGHV1-2_star_02_47: 1.0
736
+ - !!python/object:python.hmmwriter.State
737
+ emissions:
738
+ probs:
739
+ A: 0.03666666666666667
740
+ C: 0.89
741
+ G: 0.03666666666666667
742
+ T: 0.03666666666666667
743
+ track: nukes
744
+ extras:
745
+ ambiguous_char: N
746
+ ambiguous_emission_prob: 0.25
747
+ germline: C
748
+ name: IGHV1-2_star_02_47
749
+ transitions:
750
+ IGHV1-2_star_02_48: 1.0
751
+ - !!python/object:python.hmmwriter.State
752
+ emissions:
753
+ probs:
754
+ A: 0.0356608468248
755
+ C: 0.0356608468248
756
+ G: 0.0356608468248
757
+ T: 0.8930174595256
758
+ track: nukes
759
+ extras:
760
+ ambiguous_char: N
761
+ ambiguous_emission_prob: 0.25
762
+ germline: T
763
+ name: IGHV1-2_star_02_48
764
+ transitions:
765
+ IGHV1-2_star_02_49: 1.0
766
+ - !!python/object:python.hmmwriter.State
767
+ emissions:
768
+ probs:
769
+ A: 0.0356608468248
770
+ C: 0.8930174595256
771
+ G: 0.0356608468248
772
+ T: 0.0356608468248
773
+ track: nukes
774
+ extras:
775
+ ambiguous_char: N
776
+ ambiguous_emission_prob: 0.25
777
+ germline: C
778
+ name: IGHV1-2_star_02_49
779
+ transitions:
780
+ IGHV1-2_star_02_50: 1.0
781
+ - !!python/object:python.hmmwriter.State
782
+ emissions:
783
+ probs:
784
+ A: 0.8930174595256
785
+ C: 0.0356608468248
786
+ G: 0.0356608468248
787
+ T: 0.0356608468248
788
+ track: nukes
789
+ extras:
790
+ ambiguous_char: N
791
+ ambiguous_emission_prob: 0.25
792
+ germline: A
793
+ name: IGHV1-2_star_02_50
794
+ transitions:
795
+ IGHV1-2_star_02_51: 1.0
796
+ - !!python/object:python.hmmwriter.State
797
+ emissions:
798
+ probs:
799
+ A: 0.04
800
+ C: 0.08
801
+ G: 0.84
802
+ T: 0.04
803
+ track: nukes
804
+ extras:
805
+ ambiguous_char: N
806
+ ambiguous_emission_prob: 0.25
807
+ germline: G
808
+ name: IGHV1-2_star_02_51
809
+ transitions:
810
+ IGHV1-2_star_02_52: 1.0
811
+ - !!python/object:python.hmmwriter.State
812
+ emissions:
813
+ probs:
814
+ A: 0.0356608468248
815
+ C: 0.0356608468248
816
+ G: 0.0356608468248
817
+ T: 0.8930174595256
818
+ track: nukes
819
+ extras:
820
+ ambiguous_char: N
821
+ ambiguous_emission_prob: 0.25
822
+ germline: T
823
+ name: IGHV1-2_star_02_52
824
+ transitions:
825
+ IGHV1-2_star_02_53: 1.0
826
+ - !!python/object:python.hmmwriter.State
827
+ emissions:
828
+ probs:
829
+ A: 0.0356608468248
830
+ C: 0.0356608468248
831
+ G: 0.8930174595256
832
+ T: 0.0356608468248
833
+ track: nukes
834
+ extras:
835
+ ambiguous_char: N
836
+ ambiguous_emission_prob: 0.25
837
+ germline: G
838
+ name: IGHV1-2_star_02_53
839
+ transitions:
840
+ IGHV1-2_star_02_54: 1.0
841
+ - !!python/object:python.hmmwriter.State
842
+ emissions:
843
+ probs:
844
+ A: 0.89
845
+ C: 0.03666666666666667
846
+ G: 0.03666666666666667
847
+ T: 0.03666666666666667
848
+ track: nukes
849
+ extras:
850
+ ambiguous_char: N
851
+ ambiguous_emission_prob: 0.25
852
+ germline: A
853
+ name: IGHV1-2_star_02_54
854
+ transitions:
855
+ IGHV1-2_star_02_55: 1.0
856
+ - !!python/object:python.hmmwriter.State
857
+ emissions:
858
+ probs:
859
+ A: 0.8
860
+ C: 0.12
861
+ G: 0.04000000000000001
862
+ T: 0.04000000000000001
863
+ track: nukes
864
+ extras:
865
+ ambiguous_char: N
866
+ ambiguous_emission_prob: 0.25
867
+ germline: A
868
+ name: IGHV1-2_star_02_55
869
+ transitions:
870
+ IGHV1-2_star_02_56: 1.0
871
+ - !!python/object:python.hmmwriter.State
872
+ emissions:
873
+ probs:
874
+ A: 0.04000000000000001
875
+ C: 0.04000000000000001
876
+ G: 0.8
877
+ T: 0.12
878
+ track: nukes
879
+ extras:
880
+ ambiguous_char: N
881
+ ambiguous_emission_prob: 0.25
882
+ germline: G
883
+ name: IGHV1-2_star_02_56
884
+ transitions:
885
+ IGHV1-2_star_02_57: 1.0
886
+ - !!python/object:python.hmmwriter.State
887
+ emissions:
888
+ probs:
889
+ A: 0.04000000000000001
890
+ C: 0.12
891
+ G: 0.8
892
+ T: 0.04000000000000001
893
+ track: nukes
894
+ extras:
895
+ ambiguous_char: N
896
+ ambiguous_emission_prob: 0.25
897
+ germline: G
898
+ name: IGHV1-2_star_02_57
899
+ transitions:
900
+ IGHV1-2_star_02_58: 1.0
901
+ - !!python/object:python.hmmwriter.State
902
+ emissions:
903
+ probs:
904
+ A: 0.0356608468248
905
+ C: 0.0356608468248
906
+ G: 0.0356608468248
907
+ T: 0.8930174595256
908
+ track: nukes
909
+ extras:
910
+ ambiguous_char: N
911
+ ambiguous_emission_prob: 0.25
912
+ germline: T
913
+ name: IGHV1-2_star_02_58
914
+ transitions:
915
+ IGHV1-2_star_02_59: 1.0
916
+ - !!python/object:python.hmmwriter.State
917
+ emissions:
918
+ probs:
919
+ A: 0.1
920
+ C: 0.8
921
+ G: 0.05
922
+ T: 0.05
923
+ track: nukes
924
+ extras:
925
+ ambiguous_char: N
926
+ ambiguous_emission_prob: 0.25
927
+ germline: C
928
+ name: IGHV1-2_star_02_59
929
+ transitions:
930
+ IGHV1-2_star_02_60: 1.0
931
+ - !!python/object:python.hmmwriter.State
932
+ emissions:
933
+ probs:
934
+ A: 0.0356608468248
935
+ C: 0.0356608468248
936
+ G: 0.0356608468248
937
+ T: 0.8930174595256
938
+ track: nukes
939
+ extras:
940
+ ambiguous_char: N
941
+ ambiguous_emission_prob: 0.25
942
+ germline: T
943
+ name: IGHV1-2_star_02_60
944
+ transitions:
945
+ IGHV1-2_star_02_61: 1.0
946
+ - !!python/object:python.hmmwriter.State
947
+ emissions:
948
+ probs:
949
+ A: 0.0356608468248
950
+ C: 0.8930174595256
951
+ G: 0.0356608468248
952
+ T: 0.0356608468248
953
+ track: nukes
954
+ extras:
955
+ ambiguous_char: N
956
+ ambiguous_emission_prob: 0.25
957
+ germline: C
958
+ name: IGHV1-2_star_02_61
959
+ transitions:
960
+ IGHV1-2_star_02_62: 1.0
961
+ - !!python/object:python.hmmwriter.State
962
+ emissions:
963
+ probs:
964
+ A: 0.05333333333333333
965
+ C: 0.84
966
+ G: 0.05333333333333333
967
+ T: 0.05333333333333333
968
+ track: nukes
969
+ extras:
970
+ ambiguous_char: N
971
+ ambiguous_emission_prob: 0.25
972
+ germline: C
973
+ name: IGHV1-2_star_02_62
974
+ transitions:
975
+ IGHV1-2_star_02_63: 1.0
976
+ - !!python/object:python.hmmwriter.State
977
+ emissions:
978
+ probs:
979
+ A: 0.0356608468248
980
+ C: 0.0356608468248
981
+ G: 0.0356608468248
982
+ T: 0.8930174595256
983
+ track: nukes
984
+ extras:
985
+ ambiguous_char: N
986
+ ambiguous_emission_prob: 0.25
987
+ germline: T
988
+ name: IGHV1-2_star_02_63
989
+ transitions:
990
+ IGHV1-2_star_02_64: 1.0
991
+ - !!python/object:python.hmmwriter.State
992
+ emissions:
993
+ probs:
994
+ A: 0.0356608468248
995
+ C: 0.0356608468248
996
+ G: 0.8930174595256
997
+ T: 0.0356608468248
998
+ track: nukes
999
+ extras:
1000
+ ambiguous_char: N
1001
+ ambiguous_emission_prob: 0.25
1002
+ germline: G
1003
+ name: IGHV1-2_star_02_64
1004
+ transitions:
1005
+ IGHV1-2_star_02_65: 1.0
1006
+ - !!python/object:python.hmmwriter.State
1007
+ emissions:
1008
+ probs:
1009
+ A: 0.04
1010
+ C: 0.84
1011
+ G: 0.04
1012
+ T: 0.08
1013
+ track: nukes
1014
+ extras:
1015
+ ambiguous_char: N
1016
+ ambiguous_emission_prob: 0.25
1017
+ germline: C
1018
+ name: IGHV1-2_star_02_65
1019
+ transitions:
1020
+ IGHV1-2_star_02_66: 1.0
1021
+ - !!python/object:python.hmmwriter.State
1022
+ emissions:
1023
+ probs:
1024
+ A: 0.8
1025
+ C: 0.04000000000000001
1026
+ G: 0.08000000000000002
1027
+ T: 0.08000000000000002
1028
+ track: nukes
1029
+ extras:
1030
+ ambiguous_char: N
1031
+ ambiguous_emission_prob: 0.25
1032
+ germline: A
1033
+ name: IGHV1-2_star_02_66
1034
+ transitions:
1035
+ IGHV1-2_star_02_67: 1.0
1036
+ - !!python/object:python.hmmwriter.State
1037
+ emissions:
1038
+ probs:
1039
+ A: 0.8
1040
+ C: 0.04000000000000001
1041
+ G: 0.04000000000000001
1042
+ T: 0.12
1043
+ track: nukes
1044
+ extras:
1045
+ ambiguous_char: N
1046
+ ambiguous_emission_prob: 0.25
1047
+ germline: A
1048
+ name: IGHV1-2_star_02_67
1049
+ transitions:
1050
+ IGHV1-2_star_02_68: 1.0
1051
+ - !!python/object:python.hmmwriter.State
1052
+ emissions:
1053
+ probs:
1054
+ A: 0.12
1055
+ C: 0.04000000000000001
1056
+ G: 0.8
1057
+ T: 0.04000000000000001
1058
+ track: nukes
1059
+ extras:
1060
+ ambiguous_char: N
1061
+ ambiguous_emission_prob: 0.25
1062
+ germline: G
1063
+ name: IGHV1-2_star_02_68
1064
+ transitions:
1065
+ IGHV1-2_star_02_69: 1.0
1066
+ - !!python/object:python.hmmwriter.State
1067
+ emissions:
1068
+ probs:
1069
+ A: 0.08
1070
+ C: 0.04
1071
+ G: 0.84
1072
+ T: 0.04
1073
+ track: nukes
1074
+ extras:
1075
+ ambiguous_char: N
1076
+ ambiguous_emission_prob: 0.25
1077
+ germline: G
1078
+ name: IGHV1-2_star_02_69
1079
+ transitions:
1080
+ IGHV1-2_star_02_70: 1.0
1081
+ - !!python/object:python.hmmwriter.State
1082
+ emissions:
1083
+ probs:
1084
+ A: 0.0356608468248
1085
+ C: 0.8930174595256
1086
+ G: 0.0356608468248
1087
+ T: 0.0356608468248
1088
+ track: nukes
1089
+ extras:
1090
+ ambiguous_char: N
1091
+ ambiguous_emission_prob: 0.25
1092
+ germline: C
1093
+ name: IGHV1-2_star_02_70
1094
+ transitions:
1095
+ IGHV1-2_star_02_71: 1.0
1096
+ - !!python/object:python.hmmwriter.State
1097
+ emissions:
1098
+ probs:
1099
+ A: 0.03666666666666667
1100
+ C: 0.03666666666666667
1101
+ G: 0.03666666666666667
1102
+ T: 0.89
1103
+ track: nukes
1104
+ extras:
1105
+ ambiguous_char: N
1106
+ ambiguous_emission_prob: 0.25
1107
+ germline: T
1108
+ name: IGHV1-2_star_02_71
1109
+ transitions:
1110
+ IGHV1-2_star_02_72: 1.0
1111
+ - !!python/object:python.hmmwriter.State
1112
+ emissions:
1113
+ probs:
1114
+ A: 0.0356608468248
1115
+ C: 0.0356608468248
1116
+ G: 0.0356608468248
1117
+ T: 0.8930174595256
1118
+ track: nukes
1119
+ extras:
1120
+ ambiguous_char: N
1121
+ ambiguous_emission_prob: 0.25
1122
+ germline: T
1123
+ name: IGHV1-2_star_02_72
1124
+ transitions:
1125
+ IGHV1-2_star_02_73: 1.0
1126
+ - !!python/object:python.hmmwriter.State
1127
+ emissions:
1128
+ probs:
1129
+ A: 0.0356608468248
1130
+ C: 0.8930174595256
1131
+ G: 0.0356608468248
1132
+ T: 0.0356608468248
1133
+ track: nukes
1134
+ extras:
1135
+ ambiguous_char: N
1136
+ ambiguous_emission_prob: 0.25
1137
+ germline: C
1138
+ name: IGHV1-2_star_02_73
1139
+ transitions:
1140
+ IGHV1-2_star_02_74: 1.0
1141
+ - !!python/object:python.hmmwriter.State
1142
+ emissions:
1143
+ probs:
1144
+ A: 0.04
1145
+ C: 0.08
1146
+ G: 0.04
1147
+ T: 0.84
1148
+ track: nukes
1149
+ extras:
1150
+ ambiguous_char: N
1151
+ ambiguous_emission_prob: 0.25
1152
+ germline: T
1153
+ name: IGHV1-2_star_02_74
1154
+ transitions:
1155
+ IGHV1-2_star_02_75: 1.0
1156
+ - !!python/object:python.hmmwriter.State
1157
+ emissions:
1158
+ probs:
1159
+ A: 0.0356608468248
1160
+ C: 0.0356608468248
1161
+ G: 0.8930174595256
1162
+ T: 0.0356608468248
1163
+ track: nukes
1164
+ extras:
1165
+ ambiguous_char: N
1166
+ ambiguous_emission_prob: 0.25
1167
+ germline: G
1168
+ name: IGHV1-2_star_02_75
1169
+ transitions:
1170
+ IGHV1-2_star_02_76: 1.0
1171
+ - !!python/object:python.hmmwriter.State
1172
+ emissions:
1173
+ probs:
1174
+ A: 0.03666666666666667
1175
+ C: 0.03666666666666667
1176
+ G: 0.89
1177
+ T: 0.03666666666666667
1178
+ track: nukes
1179
+ extras:
1180
+ ambiguous_char: N
1181
+ ambiguous_emission_prob: 0.25
1182
+ germline: G
1183
+ name: IGHV1-2_star_02_76
1184
+ transitions:
1185
+ IGHV1-2_star_02_77: 1.0
1186
+ - !!python/object:python.hmmwriter.State
1187
+ emissions:
1188
+ probs:
1189
+ A: 0.8930174595256
1190
+ C: 0.0356608468248
1191
+ G: 0.0356608468248
1192
+ T: 0.0356608468248
1193
+ track: nukes
1194
+ extras:
1195
+ ambiguous_char: N
1196
+ ambiguous_emission_prob: 0.25
1197
+ germline: A
1198
+ name: IGHV1-2_star_02_77
1199
+ transitions:
1200
+ IGHV1-2_star_02_78: 1.0
1201
+ - !!python/object:python.hmmwriter.State
1202
+ emissions:
1203
+ probs:
1204
+ A: 0.0356608468248
1205
+ C: 0.0356608468248
1206
+ G: 0.0356608468248
1207
+ T: 0.8930174595256
1208
+ track: nukes
1209
+ extras:
1210
+ ambiguous_char: N
1211
+ ambiguous_emission_prob: 0.25
1212
+ germline: T
1213
+ name: IGHV1-2_star_02_78
1214
+ transitions:
1215
+ IGHV1-2_star_02_79: 1.0
1216
+ - !!python/object:python.hmmwriter.State
1217
+ emissions:
1218
+ probs:
1219
+ A: 0.8930174595256
1220
+ C: 0.0356608468248
1221
+ G: 0.0356608468248
1222
+ T: 0.0356608468248
1223
+ track: nukes
1224
+ extras:
1225
+ ambiguous_char: N
1226
+ ambiguous_emission_prob: 0.25
1227
+ germline: A
1228
+ name: IGHV1-2_star_02_79
1229
+ transitions:
1230
+ IGHV1-2_star_02_80: 1.0
1231
+ - !!python/object:python.hmmwriter.State
1232
+ emissions:
1233
+ probs:
1234
+ A: 0.04000000000000001
1235
+ C: 0.8
1236
+ G: 0.04000000000000001
1237
+ T: 0.12
1238
+ track: nukes
1239
+ extras:
1240
+ ambiguous_char: N
1241
+ ambiguous_emission_prob: 0.25
1242
+ germline: C
1243
+ name: IGHV1-2_star_02_80
1244
+ transitions:
1245
+ IGHV1-2_star_02_81: 1.0
1246
+ - !!python/object:python.hmmwriter.State
1247
+ emissions:
1248
+ probs:
1249
+ A: 0.8
1250
+ C: 0.04000000000000001
1251
+ G: 0.12
1252
+ T: 0.04000000000000001
1253
+ track: nukes
1254
+ extras:
1255
+ ambiguous_char: N
1256
+ ambiguous_emission_prob: 0.25
1257
+ germline: A
1258
+ name: IGHV1-2_star_02_81
1259
+ transitions:
1260
+ IGHV1-2_star_02_82: 1.0
1261
+ - !!python/object:python.hmmwriter.State
1262
+ emissions:
1263
+ probs:
1264
+ A: 0.04
1265
+ C: 0.84
1266
+ G: 0.04
1267
+ T: 0.08
1268
+ track: nukes
1269
+ extras:
1270
+ ambiguous_char: N
1271
+ ambiguous_emission_prob: 0.25
1272
+ germline: C
1273
+ name: IGHV1-2_star_02_82
1274
+ transitions:
1275
+ IGHV1-2_star_02_83: 1.0
1276
+ - !!python/object:python.hmmwriter.State
1277
+ emissions:
1278
+ probs:
1279
+ A: 0.03666666666666667
1280
+ C: 0.89
1281
+ G: 0.03666666666666667
1282
+ T: 0.03666666666666667
1283
+ track: nukes
1284
+ extras:
1285
+ ambiguous_char: N
1286
+ ambiguous_emission_prob: 0.25
1287
+ germline: C
1288
+ name: IGHV1-2_star_02_83
1289
+ transitions:
1290
+ IGHV1-2_star_02_84: 1.0
1291
+ - !!python/object:python.hmmwriter.State
1292
+ emissions:
1293
+ probs:
1294
+ A: 0.0356608468248
1295
+ C: 0.0356608468248
1296
+ G: 0.0356608468248
1297
+ T: 0.8930174595256
1298
+ track: nukes
1299
+ extras:
1300
+ ambiguous_char: N
1301
+ ambiguous_emission_prob: 0.25
1302
+ germline: T
1303
+ name: IGHV1-2_star_02_84
1304
+ transitions:
1305
+ IGHV1-2_star_02_85: 1.0
1306
+ - !!python/object:python.hmmwriter.State
1307
+ emissions:
1308
+ probs:
1309
+ A: 0.0356608468248
1310
+ C: 0.0356608468248
1311
+ G: 0.0356608468248
1312
+ T: 0.8930174595256
1313
+ track: nukes
1314
+ extras:
1315
+ ambiguous_char: N
1316
+ ambiguous_emission_prob: 0.25
1317
+ germline: T
1318
+ name: IGHV1-2_star_02_85
1319
+ transitions:
1320
+ IGHV1-2_star_02_86: 1.0
1321
+ - !!python/object:python.hmmwriter.State
1322
+ emissions:
1323
+ probs:
1324
+ A: 0.05333333333333333
1325
+ C: 0.84
1326
+ G: 0.05333333333333333
1327
+ T: 0.05333333333333333
1328
+ track: nukes
1329
+ extras:
1330
+ ambiguous_char: N
1331
+ ambiguous_emission_prob: 0.25
1332
+ germline: C
1333
+ name: IGHV1-2_star_02_86
1334
+ transitions:
1335
+ IGHV1-2_star_02_87: 1.0
1336
+ - !!python/object:python.hmmwriter.State
1337
+ emissions:
1338
+ probs:
1339
+ A: 0.84
1340
+ C: 0.04
1341
+ G: 0.08
1342
+ T: 0.04
1343
+ track: nukes
1344
+ extras:
1345
+ ambiguous_char: N
1346
+ ambiguous_emission_prob: 0.25
1347
+ germline: A
1348
+ name: IGHV1-2_star_02_87
1349
+ transitions:
1350
+ IGHV1-2_star_02_88: 1.0
1351
+ - !!python/object:python.hmmwriter.State
1352
+ emissions:
1353
+ probs:
1354
+ A: 0.03333333333333333
1355
+ C: 0.8
1356
+ G: 0.03333333333333333
1357
+ T: 0.13333333333333333
1358
+ track: nukes
1359
+ extras:
1360
+ ambiguous_char: N
1361
+ ambiguous_emission_prob: 0.25
1362
+ germline: C
1363
+ name: IGHV1-2_star_02_88
1364
+ transitions:
1365
+ IGHV1-2_star_02_89: 1.0
1366
+ - !!python/object:python.hmmwriter.State
1367
+ emissions:
1368
+ probs:
1369
+ A: 0.04
1370
+ C: 0.84
1371
+ G: 0.04
1372
+ T: 0.08
1373
+ track: nukes
1374
+ extras:
1375
+ ambiguous_char: N
1376
+ ambiguous_emission_prob: 0.25
1377
+ germline: C
1378
+ name: IGHV1-2_star_02_89
1379
+ transitions:
1380
+ IGHV1-2_star_02_90: 1.0
1381
+ - !!python/object:python.hmmwriter.State
1382
+ emissions:
1383
+ probs:
1384
+ A: 0.04
1385
+ C: 0.08
1386
+ G: 0.84
1387
+ T: 0.04
1388
+ track: nukes
1389
+ extras:
1390
+ ambiguous_char: N
1391
+ ambiguous_emission_prob: 0.25
1392
+ germline: G
1393
+ name: IGHV1-2_star_02_90
1394
+ transitions:
1395
+ IGHV1-2_star_02_91: 1.0
1396
+ - !!python/object:python.hmmwriter.State
1397
+ emissions:
1398
+ probs:
1399
+ A: 0.13333333333333333
1400
+ C: 0.03333333333333333
1401
+ G: 0.8
1402
+ T: 0.03333333333333333
1403
+ track: nukes
1404
+ extras:
1405
+ ambiguous_char: N
1406
+ ambiguous_emission_prob: 0.25
1407
+ germline: G
1408
+ name: IGHV1-2_star_02_91
1409
+ transitions:
1410
+ IGHV1-2_star_02_92: 1.0
1411
+ - !!python/object:python.hmmwriter.State
1412
+ emissions:
1413
+ probs:
1414
+ A: 0.1
1415
+ C: 0.8
1416
+ G: 0.05
1417
+ T: 0.05
1418
+ track: nukes
1419
+ extras:
1420
+ ambiguous_char: N
1421
+ ambiguous_emission_prob: 0.25
1422
+ germline: C
1423
+ name: IGHV1-2_star_02_92
1424
+ transitions:
1425
+ IGHV1-2_star_02_93: 1.0
1426
+ - !!python/object:python.hmmwriter.State
1427
+ emissions:
1428
+ probs:
1429
+ A: 0.04
1430
+ C: 0.08
1431
+ G: 0.04
1432
+ T: 0.84
1433
+ track: nukes
1434
+ extras:
1435
+ ambiguous_char: N
1436
+ ambiguous_emission_prob: 0.25
1437
+ germline: T
1438
+ name: IGHV1-2_star_02_93
1439
+ transitions:
1440
+ IGHV1-2_star_02_94: 1.0
1441
+ - !!python/object:python.hmmwriter.State
1442
+ emissions:
1443
+ probs:
1444
+ A: 0.89
1445
+ C: 0.03666666666666667
1446
+ G: 0.03666666666666667
1447
+ T: 0.03666666666666667
1448
+ track: nukes
1449
+ extras:
1450
+ ambiguous_char: N
1451
+ ambiguous_emission_prob: 0.25
1452
+ germline: A
1453
+ name: IGHV1-2_star_02_94
1454
+ transitions:
1455
+ IGHV1-2_star_02_95: 1.0
1456
+ - !!python/object:python.hmmwriter.State
1457
+ emissions:
1458
+ probs:
1459
+ A: 0.04000000000000001
1460
+ C: 0.8
1461
+ G: 0.04000000000000001
1462
+ T: 0.12
1463
+ track: nukes
1464
+ extras:
1465
+ ambiguous_char: N
1466
+ ambiguous_emission_prob: 0.25
1467
+ germline: C
1468
+ name: IGHV1-2_star_02_95
1469
+ transitions:
1470
+ IGHV1-2_star_02_96: 1.0
1471
+ - !!python/object:python.hmmwriter.State
1472
+ emissions:
1473
+ probs:
1474
+ A: 0.0356608468248
1475
+ C: 0.0356608468248
1476
+ G: 0.0356608468248
1477
+ T: 0.8930174595256
1478
+ track: nukes
1479
+ extras:
1480
+ ambiguous_char: N
1481
+ ambiguous_emission_prob: 0.25
1482
+ germline: T
1483
+ name: IGHV1-2_star_02_96
1484
+ transitions:
1485
+ IGHV1-2_star_02_97: 1.0
1486
+ - !!python/object:python.hmmwriter.State
1487
+ emissions:
1488
+ probs:
1489
+ A: 0.8
1490
+ C: 0.04000000000000001
1491
+ G: 0.08000000000000002
1492
+ T: 0.08000000000000002
1493
+ track: nukes
1494
+ extras:
1495
+ ambiguous_char: N
1496
+ ambiguous_emission_prob: 0.25
1497
+ germline: A
1498
+ name: IGHV1-2_star_02_97
1499
+ transitions:
1500
+ IGHV1-2_star_02_98: 1.0
1501
+ - !!python/object:python.hmmwriter.State
1502
+ emissions:
1503
+ probs:
1504
+ A: 0.03666666666666667
1505
+ C: 0.03666666666666667
1506
+ G: 0.03666666666666667
1507
+ T: 0.89
1508
+ track: nukes
1509
+ extras:
1510
+ ambiguous_char: N
1511
+ ambiguous_emission_prob: 0.25
1512
+ germline: T
1513
+ name: IGHV1-2_star_02_98
1514
+ transitions:
1515
+ IGHV1-2_star_02_99: 1.0
1516
+ - !!python/object:python.hmmwriter.State
1517
+ emissions:
1518
+ probs:
1519
+ A: 0.84
1520
+ C: 0.04
1521
+ G: 0.08
1522
+ T: 0.04
1523
+ track: nukes
1524
+ extras:
1525
+ ambiguous_char: N
1526
+ ambiguous_emission_prob: 0.25
1527
+ germline: A
1528
+ name: IGHV1-2_star_02_99
1529
+ transitions:
1530
+ IGHV1-2_star_02_100: 1.0
1531
+ - !!python/object:python.hmmwriter.State
1532
+ emissions:
1533
+ probs:
1534
+ A: 0.0356608468248
1535
+ C: 0.0356608468248
1536
+ G: 0.0356608468248
1537
+ T: 0.8930174595256
1538
+ track: nukes
1539
+ extras:
1540
+ ambiguous_char: N
1541
+ ambiguous_emission_prob: 0.25
1542
+ germline: T
1543
+ name: IGHV1-2_star_02_100
1544
+ transitions:
1545
+ IGHV1-2_star_02_101: 1.0
1546
+ - !!python/object:python.hmmwriter.State
1547
+ emissions:
1548
+ probs:
1549
+ A: 0.08000000000000002
1550
+ C: 0.04000000000000001
1551
+ G: 0.8
1552
+ T: 0.08000000000000002
1553
+ track: nukes
1554
+ extras:
1555
+ ambiguous_char: N
1556
+ ambiguous_emission_prob: 0.25
1557
+ germline: G
1558
+ name: IGHV1-2_star_02_101
1559
+ transitions:
1560
+ IGHV1-2_star_02_102: 1.0
1561
+ - !!python/object:python.hmmwriter.State
1562
+ emissions:
1563
+ probs:
1564
+ A: 0.05
1565
+ C: 0.8
1566
+ G: 0.1
1567
+ T: 0.05
1568
+ track: nukes
1569
+ extras:
1570
+ ambiguous_char: N
1571
+ ambiguous_emission_prob: 0.25
1572
+ germline: C
1573
+ name: IGHV1-2_star_02_102
1574
+ transitions:
1575
+ IGHV1-2_star_02_103: 1.0
1576
+ - !!python/object:python.hmmwriter.State
1577
+ emissions:
1578
+ probs:
1579
+ A: 0.8930174595256
1580
+ C: 0.0356608468248
1581
+ G: 0.0356608468248
1582
+ T: 0.0356608468248
1583
+ track: nukes
1584
+ extras:
1585
+ ambiguous_char: N
1586
+ ambiguous_emission_prob: 0.25
1587
+ germline: A
1588
+ name: IGHV1-2_star_02_103
1589
+ transitions:
1590
+ IGHV1-2_star_02_104: 1.0
1591
+ - !!python/object:python.hmmwriter.State
1592
+ emissions:
1593
+ probs:
1594
+ A: 0.04000000000000001
1595
+ C: 0.8
1596
+ G: 0.08000000000000002
1597
+ T: 0.08000000000000002
1598
+ track: nukes
1599
+ extras:
1600
+ ambiguous_char: N
1601
+ ambiguous_emission_prob: 0.25
1602
+ germline: C
1603
+ name: IGHV1-2_star_02_104
1604
+ transitions:
1605
+ IGHV1-2_star_02_105: 1.0
1606
+ - !!python/object:python.hmmwriter.State
1607
+ emissions:
1608
+ probs:
1609
+ A: 0.0356608468248
1610
+ C: 0.0356608468248
1611
+ G: 0.0356608468248
1612
+ T: 0.8930174595256
1613
+ track: nukes
1614
+ extras:
1615
+ ambiguous_char: N
1616
+ ambiguous_emission_prob: 0.25
1617
+ germline: T
1618
+ name: IGHV1-2_star_02_105
1619
+ transitions:
1620
+ IGHV1-2_star_02_106: 1.0
1621
+ - !!python/object:python.hmmwriter.State
1622
+ emissions:
1623
+ probs:
1624
+ A: 0.0356608468248
1625
+ C: 0.0356608468248
1626
+ G: 0.8930174595256
1627
+ T: 0.0356608468248
1628
+ track: nukes
1629
+ extras:
1630
+ ambiguous_char: N
1631
+ ambiguous_emission_prob: 0.25
1632
+ germline: G
1633
+ name: IGHV1-2_star_02_106
1634
+ transitions:
1635
+ IGHV1-2_star_02_107: 1.0
1636
+ - !!python/object:python.hmmwriter.State
1637
+ emissions:
1638
+ probs:
1639
+ A: 0.0356608468248
1640
+ C: 0.0356608468248
1641
+ G: 0.8930174595256
1642
+ T: 0.0356608468248
1643
+ track: nukes
1644
+ extras:
1645
+ ambiguous_char: N
1646
+ ambiguous_emission_prob: 0.25
1647
+ germline: G
1648
+ name: IGHV1-2_star_02_107
1649
+ transitions:
1650
+ IGHV1-2_star_02_108: 1.0
1651
+ - !!python/object:python.hmmwriter.State
1652
+ emissions:
1653
+ probs:
1654
+ A: 0.03666666666666667
1655
+ C: 0.03666666666666667
1656
+ G: 0.89
1657
+ T: 0.03666666666666667
1658
+ track: nukes
1659
+ extras:
1660
+ ambiguous_char: N
1661
+ ambiguous_emission_prob: 0.25
1662
+ germline: G
1663
+ name: IGHV1-2_star_02_108
1664
+ transitions:
1665
+ IGHV1-2_star_02_109: 1.0
1666
+ - !!python/object:python.hmmwriter.State
1667
+ emissions:
1668
+ probs:
1669
+ A: 0.0356608468248
1670
+ C: 0.0356608468248
1671
+ G: 0.0356608468248
1672
+ T: 0.8930174595256
1673
+ track: nukes
1674
+ extras:
1675
+ ambiguous_char: N
1676
+ ambiguous_emission_prob: 0.25
1677
+ germline: T
1678
+ name: IGHV1-2_star_02_109
1679
+ transitions:
1680
+ IGHV1-2_star_02_110: 1.0
1681
+ - !!python/object:python.hmmwriter.State
1682
+ emissions:
1683
+ probs:
1684
+ A: 0.04000000000000001
1685
+ C: 0.04000000000000001
1686
+ G: 0.8
1687
+ T: 0.12
1688
+ track: nukes
1689
+ extras:
1690
+ ambiguous_char: N
1691
+ ambiguous_emission_prob: 0.25
1692
+ germline: G
1693
+ name: IGHV1-2_star_02_110
1694
+ transitions:
1695
+ IGHV1-2_star_02_111: 1.0
1696
+ - !!python/object:python.hmmwriter.State
1697
+ emissions:
1698
+ probs:
1699
+ A: 0.0356608468248
1700
+ C: 0.8930174595256
1701
+ G: 0.0356608468248
1702
+ T: 0.0356608468248
1703
+ track: nukes
1704
+ extras:
1705
+ ambiguous_char: N
1706
+ ambiguous_emission_prob: 0.25
1707
+ germline: C
1708
+ name: IGHV1-2_star_02_111
1709
+ transitions:
1710
+ IGHV1-2_star_02_112: 1.0
1711
+ - !!python/object:python.hmmwriter.State
1712
+ emissions:
1713
+ probs:
1714
+ A: 0.0356608468248
1715
+ C: 0.0356608468248
1716
+ G: 0.8930174595256
1717
+ T: 0.0356608468248
1718
+ track: nukes
1719
+ extras:
1720
+ ambiguous_char: N
1721
+ ambiguous_emission_prob: 0.25
1722
+ germline: G
1723
+ name: IGHV1-2_star_02_112
1724
+ transitions:
1725
+ IGHV1-2_star_02_113: 1.0
1726
+ - !!python/object:python.hmmwriter.State
1727
+ emissions:
1728
+ probs:
1729
+ A: 0.84
1730
+ C: 0.05333333333333333
1731
+ G: 0.05333333333333333
1732
+ T: 0.05333333333333333
1733
+ track: nukes
1734
+ extras:
1735
+ ambiguous_char: N
1736
+ ambiguous_emission_prob: 0.25
1737
+ germline: A
1738
+ name: IGHV1-2_star_02_113
1739
+ transitions:
1740
+ IGHV1-2_star_02_114: 1.0
1741
+ - !!python/object:python.hmmwriter.State
1742
+ emissions:
1743
+ probs:
1744
+ A: 0.0356608468248
1745
+ C: 0.8930174595256
1746
+ G: 0.0356608468248
1747
+ T: 0.0356608468248
1748
+ track: nukes
1749
+ extras:
1750
+ ambiguous_char: N
1751
+ ambiguous_emission_prob: 0.25
1752
+ germline: C
1753
+ name: IGHV1-2_star_02_114
1754
+ transitions:
1755
+ IGHV1-2_star_02_115: 1.0
1756
+ - !!python/object:python.hmmwriter.State
1757
+ emissions:
1758
+ probs:
1759
+ A: 0.8930174595256
1760
+ C: 0.0356608468248
1761
+ G: 0.0356608468248
1762
+ T: 0.0356608468248
1763
+ track: nukes
1764
+ extras:
1765
+ ambiguous_char: N
1766
+ ambiguous_emission_prob: 0.25
1767
+ germline: A
1768
+ name: IGHV1-2_star_02_115
1769
+ transitions:
1770
+ IGHV1-2_star_02_116: 1.0
1771
+ - !!python/object:python.hmmwriter.State
1772
+ emissions:
1773
+ probs:
1774
+ A: 0.03666666666666667
1775
+ C: 0.03666666666666667
1776
+ G: 0.89
1777
+ T: 0.03666666666666667
1778
+ track: nukes
1779
+ extras:
1780
+ ambiguous_char: N
1781
+ ambiguous_emission_prob: 0.25
1782
+ germline: G
1783
+ name: IGHV1-2_star_02_116
1784
+ transitions:
1785
+ IGHV1-2_star_02_117: 1.0
1786
+ - !!python/object:python.hmmwriter.State
1787
+ emissions:
1788
+ probs:
1789
+ A: 0.04
1790
+ C: 0.04
1791
+ G: 0.84
1792
+ T: 0.08
1793
+ track: nukes
1794
+ extras:
1795
+ ambiguous_char: N
1796
+ ambiguous_emission_prob: 0.25
1797
+ germline: G
1798
+ name: IGHV1-2_star_02_117
1799
+ transitions:
1800
+ IGHV1-2_star_02_118: 1.0
1801
+ - !!python/object:python.hmmwriter.State
1802
+ emissions:
1803
+ probs:
1804
+ A: 0.04000000000000001
1805
+ C: 0.8
1806
+ G: 0.08000000000000002
1807
+ T: 0.08000000000000002
1808
+ track: nukes
1809
+ extras:
1810
+ ambiguous_char: N
1811
+ ambiguous_emission_prob: 0.25
1812
+ germline: C
1813
+ name: IGHV1-2_star_02_118
1814
+ transitions:
1815
+ IGHV1-2_star_02_119: 1.0
1816
+ - !!python/object:python.hmmwriter.State
1817
+ emissions:
1818
+ probs:
1819
+ A: 0.08
1820
+ C: 0.84
1821
+ G: 0.04
1822
+ T: 0.04
1823
+ track: nukes
1824
+ extras:
1825
+ ambiguous_char: N
1826
+ ambiguous_emission_prob: 0.25
1827
+ germline: C
1828
+ name: IGHV1-2_star_02_119
1829
+ transitions:
1830
+ IGHV1-2_star_02_120: 1.0
1831
+ - !!python/object:python.hmmwriter.State
1832
+ emissions:
1833
+ probs:
1834
+ A: 0.0356608468248
1835
+ C: 0.8930174595256
1836
+ G: 0.0356608468248
1837
+ T: 0.0356608468248
1838
+ track: nukes
1839
+ extras:
1840
+ ambiguous_char: N
1841
+ ambiguous_emission_prob: 0.25
1842
+ germline: C
1843
+ name: IGHV1-2_star_02_120
1844
+ transitions:
1845
+ IGHV1-2_star_02_121: 1.0
1846
+ - !!python/object:python.hmmwriter.State
1847
+ emissions:
1848
+ probs:
1849
+ A: 0.05
1850
+ C: 0.8
1851
+ G: 0.05
1852
+ T: 0.1
1853
+ track: nukes
1854
+ extras:
1855
+ ambiguous_char: N
1856
+ ambiguous_emission_prob: 0.25
1857
+ germline: C
1858
+ name: IGHV1-2_star_02_121
1859
+ transitions:
1860
+ IGHV1-2_star_02_122: 1.0
1861
+ - !!python/object:python.hmmwriter.State
1862
+ emissions:
1863
+ probs:
1864
+ A: 0.03666666666666667
1865
+ C: 0.03666666666666667
1866
+ G: 0.03666666666666667
1867
+ T: 0.89
1868
+ track: nukes
1869
+ extras:
1870
+ ambiguous_char: N
1871
+ ambiguous_emission_prob: 0.25
1872
+ germline: T
1873
+ name: IGHV1-2_star_02_122
1874
+ transitions:
1875
+ IGHV1-2_star_02_123: 1.0
1876
+ - !!python/object:python.hmmwriter.State
1877
+ emissions:
1878
+ probs:
1879
+ A: 0.0356608468248
1880
+ C: 0.0356608468248
1881
+ G: 0.8930174595256
1882
+ T: 0.0356608468248
1883
+ track: nukes
1884
+ extras:
1885
+ ambiguous_char: N
1886
+ ambiguous_emission_prob: 0.25
1887
+ germline: G
1888
+ name: IGHV1-2_star_02_123
1889
+ transitions:
1890
+ IGHV1-2_star_02_124: 1.0
1891
+ - !!python/object:python.hmmwriter.State
1892
+ emissions:
1893
+ probs:
1894
+ A: 0.0356608468248
1895
+ C: 0.0356608468248
1896
+ G: 0.8930174595256
1897
+ T: 0.0356608468248
1898
+ track: nukes
1899
+ extras:
1900
+ ambiguous_char: N
1901
+ ambiguous_emission_prob: 0.25
1902
+ germline: G
1903
+ name: IGHV1-2_star_02_124
1904
+ transitions:
1905
+ IGHV1-2_star_02_125: 1.0
1906
+ - !!python/object:python.hmmwriter.State
1907
+ emissions:
1908
+ probs:
1909
+ A: 0.8
1910
+ C: 0.04000000000000001
1911
+ G: 0.12
1912
+ T: 0.04000000000000001
1913
+ track: nukes
1914
+ extras:
1915
+ ambiguous_char: N
1916
+ ambiguous_emission_prob: 0.25
1917
+ germline: A
1918
+ name: IGHV1-2_star_02_125
1919
+ transitions:
1920
+ IGHV1-2_star_02_126: 1.0
1921
+ - !!python/object:python.hmmwriter.State
1922
+ emissions:
1923
+ probs:
1924
+ A: 0.04000000000000001
1925
+ C: 0.8
1926
+ G: 0.04000000000000001
1927
+ T: 0.12
1928
+ track: nukes
1929
+ extras:
1930
+ ambiguous_char: N
1931
+ ambiguous_emission_prob: 0.25
1932
+ germline: C
1933
+ name: IGHV1-2_star_02_126
1934
+ transitions:
1935
+ IGHV1-2_star_02_127: 1.0
1936
+ - !!python/object:python.hmmwriter.State
1937
+ emissions:
1938
+ probs:
1939
+ A: 0.8
1940
+ C: 0.1
1941
+ G: 0.05
1942
+ T: 0.05
1943
+ track: nukes
1944
+ extras:
1945
+ ambiguous_char: N
1946
+ ambiguous_emission_prob: 0.25
1947
+ germline: A
1948
+ name: IGHV1-2_star_02_127
1949
+ transitions:
1950
+ IGHV1-2_star_02_128: 1.0
1951
+ - !!python/object:python.hmmwriter.State
1952
+ emissions:
1953
+ probs:
1954
+ A: 0.8
1955
+ C: 0.04000000000000001
1956
+ G: 0.12
1957
+ T: 0.04000000000000001
1958
+ track: nukes
1959
+ extras:
1960
+ ambiguous_char: N
1961
+ ambiguous_emission_prob: 0.25
1962
+ germline: A
1963
+ name: IGHV1-2_star_02_128
1964
+ transitions:
1965
+ IGHV1-2_star_02_129: 1.0
1966
+ - !!python/object:python.hmmwriter.State
1967
+ emissions:
1968
+ probs:
1969
+ A: 0.04000000000000001
1970
+ C: 0.04000000000000001
1971
+ G: 0.8
1972
+ T: 0.12
1973
+ track: nukes
1974
+ extras:
1975
+ ambiguous_char: N
1976
+ ambiguous_emission_prob: 0.25
1977
+ germline: G
1978
+ name: IGHV1-2_star_02_129
1979
+ transitions:
1980
+ IGHV1-2_star_02_130: 1.0
1981
+ - !!python/object:python.hmmwriter.State
1982
+ emissions:
1983
+ probs:
1984
+ A: 0.1
1985
+ C: 0.03333333333333333
1986
+ G: 0.8
1987
+ T: 0.06666666666666667
1988
+ track: nukes
1989
+ extras:
1990
+ ambiguous_char: N
1991
+ ambiguous_emission_prob: 0.25
1992
+ germline: G
1993
+ name: IGHV1-2_star_02_130
1994
+ transitions:
1995
+ IGHV1-2_star_02_131: 1.0
1996
+ - !!python/object:python.hmmwriter.State
1997
+ emissions:
1998
+ probs:
1999
+ A: 0.08000000000000002
2000
+ C: 0.08000000000000002
2001
+ G: 0.8
2002
+ T: 0.04000000000000001
2003
+ track: nukes
2004
+ extras:
2005
+ ambiguous_char: N
2006
+ ambiguous_emission_prob: 0.25
2007
+ germline: G
2008
+ name: IGHV1-2_star_02_131
2009
+ transitions:
2010
+ IGHV1-2_star_02_132: 1.0
2011
+ - !!python/object:python.hmmwriter.State
2012
+ emissions:
2013
+ probs:
2014
+ A: 0.04
2015
+ C: 0.84
2016
+ G: 0.04
2017
+ T: 0.08
2018
+ track: nukes
2019
+ extras:
2020
+ ambiguous_char: N
2021
+ ambiguous_emission_prob: 0.25
2022
+ germline: C
2023
+ name: IGHV1-2_star_02_132
2024
+ transitions:
2025
+ IGHV1-2_star_02_133: 1.0
2026
+ - !!python/object:python.hmmwriter.State
2027
+ emissions:
2028
+ probs:
2029
+ A: 0.04
2030
+ C: 0.08
2031
+ G: 0.04
2032
+ T: 0.84
2033
+ track: nukes
2034
+ extras:
2035
+ ambiguous_char: N
2036
+ ambiguous_emission_prob: 0.25
2037
+ germline: T
2038
+ name: IGHV1-2_star_02_133
2039
+ transitions:
2040
+ IGHV1-2_star_02_134: 1.0
2041
+ - !!python/object:python.hmmwriter.State
2042
+ emissions:
2043
+ probs:
2044
+ A: 0.0356608468248
2045
+ C: 0.0356608468248
2046
+ G: 0.0356608468248
2047
+ T: 0.8930174595256
2048
+ track: nukes
2049
+ extras:
2050
+ ambiguous_char: N
2051
+ ambiguous_emission_prob: 0.25
2052
+ germline: T
2053
+ name: IGHV1-2_star_02_134
2054
+ transitions:
2055
+ IGHV1-2_star_02_135: 1.0
2056
+ - !!python/object:python.hmmwriter.State
2057
+ emissions:
2058
+ probs:
2059
+ A: 0.0356608468248
2060
+ C: 0.0356608468248
2061
+ G: 0.8930174595256
2062
+ T: 0.0356608468248
2063
+ track: nukes
2064
+ extras:
2065
+ ambiguous_char: N
2066
+ ambiguous_emission_prob: 0.25
2067
+ germline: G
2068
+ name: IGHV1-2_star_02_135
2069
+ transitions:
2070
+ IGHV1-2_star_02_136: 1.0
2071
+ - !!python/object:python.hmmwriter.State
2072
+ emissions:
2073
+ probs:
2074
+ A: 0.84
2075
+ C: 0.04
2076
+ G: 0.08
2077
+ T: 0.04
2078
+ track: nukes
2079
+ extras:
2080
+ ambiguous_char: N
2081
+ ambiguous_emission_prob: 0.25
2082
+ germline: A
2083
+ name: IGHV1-2_star_02_136
2084
+ transitions:
2085
+ IGHV1-2_star_02_137: 1.0
2086
+ - !!python/object:python.hmmwriter.State
2087
+ emissions:
2088
+ probs:
2089
+ A: 0.04
2090
+ C: 0.08
2091
+ G: 0.84
2092
+ T: 0.04
2093
+ track: nukes
2094
+ extras:
2095
+ ambiguous_char: N
2096
+ ambiguous_emission_prob: 0.25
2097
+ germline: G
2098
+ name: IGHV1-2_star_02_137
2099
+ transitions:
2100
+ IGHV1-2_star_02_138: 1.0
2101
+ - !!python/object:python.hmmwriter.State
2102
+ emissions:
2103
+ probs:
2104
+ A: 0.0356608468248
2105
+ C: 0.0356608468248
2106
+ G: 0.0356608468248
2107
+ T: 0.8930174595256
2108
+ track: nukes
2109
+ extras:
2110
+ ambiguous_char: N
2111
+ ambiguous_emission_prob: 0.25
2112
+ germline: T
2113
+ name: IGHV1-2_star_02_138
2114
+ transitions:
2115
+ IGHV1-2_star_02_139: 1.0
2116
+ - !!python/object:python.hmmwriter.State
2117
+ emissions:
2118
+ probs:
2119
+ A: 0.0356608468248
2120
+ C: 0.0356608468248
2121
+ G: 0.8930174595256
2122
+ T: 0.0356608468248
2123
+ track: nukes
2124
+ extras:
2125
+ ambiguous_char: N
2126
+ ambiguous_emission_prob: 0.25
2127
+ germline: G
2128
+ name: IGHV1-2_star_02_139
2129
+ transitions:
2130
+ IGHV1-2_star_02_140: 1.0
2131
+ - !!python/object:python.hmmwriter.State
2132
+ emissions:
2133
+ probs:
2134
+ A: 0.0356608468248
2135
+ C: 0.0356608468248
2136
+ G: 0.8930174595256
2137
+ T: 0.0356608468248
2138
+ track: nukes
2139
+ extras:
2140
+ ambiguous_char: N
2141
+ ambiguous_emission_prob: 0.25
2142
+ germline: G
2143
+ name: IGHV1-2_star_02_140
2144
+ transitions:
2145
+ IGHV1-2_star_02_141: 1.0
2146
+ - !!python/object:python.hmmwriter.State
2147
+ emissions:
2148
+ probs:
2149
+ A: 0.84
2150
+ C: 0.04
2151
+ G: 0.08
2152
+ T: 0.04
2153
+ track: nukes
2154
+ extras:
2155
+ ambiguous_char: N
2156
+ ambiguous_emission_prob: 0.25
2157
+ germline: A
2158
+ name: IGHV1-2_star_02_141
2159
+ transitions:
2160
+ IGHV1-2_star_02_142: 1.0
2161
+ - !!python/object:python.hmmwriter.State
2162
+ emissions:
2163
+ probs:
2164
+ A: 0.0356608468248
2165
+ C: 0.0356608468248
2166
+ G: 0.0356608468248
2167
+ T: 0.8930174595256
2168
+ track: nukes
2169
+ extras:
2170
+ ambiguous_char: N
2171
+ ambiguous_emission_prob: 0.25
2172
+ germline: T
2173
+ name: IGHV1-2_star_02_142
2174
+ transitions:
2175
+ IGHV1-2_star_02_143: 1.0
2176
+ - !!python/object:python.hmmwriter.State
2177
+ emissions:
2178
+ probs:
2179
+ A: 0.0356608468248
2180
+ C: 0.0356608468248
2181
+ G: 0.8930174595256
2182
+ T: 0.0356608468248
2183
+ track: nukes
2184
+ extras:
2185
+ ambiguous_char: N
2186
+ ambiguous_emission_prob: 0.25
2187
+ germline: G
2188
+ name: IGHV1-2_star_02_143
2189
+ transitions:
2190
+ IGHV1-2_star_02_144: 1.0
2191
+ - !!python/object:python.hmmwriter.State
2192
+ emissions:
2193
+ probs:
2194
+ A: 0.0356608468248
2195
+ C: 0.0356608468248
2196
+ G: 0.8930174595256
2197
+ T: 0.0356608468248
2198
+ track: nukes
2199
+ extras:
2200
+ ambiguous_char: N
2201
+ ambiguous_emission_prob: 0.25
2202
+ germline: G
2203
+ name: IGHV1-2_star_02_144
2204
+ transitions:
2205
+ IGHV1-2_star_02_145: 1.0
2206
+ - !!python/object:python.hmmwriter.State
2207
+ emissions:
2208
+ probs:
2209
+ A: 0.0356608468248
2210
+ C: 0.0356608468248
2211
+ G: 0.8930174595256
2212
+ T: 0.0356608468248
2213
+ track: nukes
2214
+ extras:
2215
+ ambiguous_char: N
2216
+ ambiguous_emission_prob: 0.25
2217
+ germline: G
2218
+ name: IGHV1-2_star_02_145
2219
+ transitions:
2220
+ IGHV1-2_star_02_146: 1.0
2221
+ - !!python/object:python.hmmwriter.State
2222
+ emissions:
2223
+ probs:
2224
+ A: 0.8
2225
+ C: 0.08000000000000002
2226
+ G: 0.08000000000000002
2227
+ T: 0.04000000000000001
2228
+ track: nukes
2229
+ extras:
2230
+ ambiguous_char: N
2231
+ ambiguous_emission_prob: 0.25
2232
+ germline: A
2233
+ name: IGHV1-2_star_02_146
2234
+ transitions:
2235
+ IGHV1-2_star_02_147: 1.0
2236
+ - !!python/object:python.hmmwriter.State
2237
+ emissions:
2238
+ probs:
2239
+ A: 0.05333333333333333
2240
+ C: 0.05333333333333333
2241
+ G: 0.05333333333333333
2242
+ T: 0.84
2243
+ track: nukes
2244
+ extras:
2245
+ ambiguous_char: N
2246
+ ambiguous_emission_prob: 0.25
2247
+ germline: T
2248
+ name: IGHV1-2_star_02_147
2249
+ transitions:
2250
+ IGHV1-2_star_02_148: 1.0
2251
+ - !!python/object:python.hmmwriter.State
2252
+ emissions:
2253
+ probs:
2254
+ A: 0.0356608468248
2255
+ C: 0.0356608468248
2256
+ G: 0.8930174595256
2257
+ T: 0.0356608468248
2258
+ track: nukes
2259
+ extras:
2260
+ ambiguous_char: N
2261
+ ambiguous_emission_prob: 0.25
2262
+ germline: G
2263
+ name: IGHV1-2_star_02_148
2264
+ transitions:
2265
+ IGHV1-2_star_02_149: 1.0
2266
+ - !!python/object:python.hmmwriter.State
2267
+ emissions:
2268
+ probs:
2269
+ A: 0.0356608468248
2270
+ C: 0.0356608468248
2271
+ G: 0.8930174595256
2272
+ T: 0.0356608468248
2273
+ track: nukes
2274
+ extras:
2275
+ ambiguous_char: N
2276
+ ambiguous_emission_prob: 0.25
2277
+ germline: G
2278
+ name: IGHV1-2_star_02_149
2279
+ transitions:
2280
+ IGHV1-2_star_02_150: 1.0
2281
+ - !!python/object:python.hmmwriter.State
2282
+ emissions:
2283
+ probs:
2284
+ A: 0.8
2285
+ C: 0.1
2286
+ G: 0.05
2287
+ T: 0.05
2288
+ track: nukes
2289
+ extras:
2290
+ ambiguous_char: N
2291
+ ambiguous_emission_prob: 0.25
2292
+ germline: A
2293
+ name: IGHV1-2_star_02_150
2294
+ transitions:
2295
+ IGHV1-2_star_02_151: 1.0
2296
+ - !!python/object:python.hmmwriter.State
2297
+ emissions:
2298
+ probs:
2299
+ A: 0.0356608468248
2300
+ C: 0.0356608468248
2301
+ G: 0.0356608468248
2302
+ T: 0.8930174595256
2303
+ track: nukes
2304
+ extras:
2305
+ ambiguous_char: N
2306
+ ambiguous_emission_prob: 0.25
2307
+ germline: T
2308
+ name: IGHV1-2_star_02_151
2309
+ transitions:
2310
+ IGHV1-2_star_02_152: 1.0
2311
+ - !!python/object:python.hmmwriter.State
2312
+ emissions:
2313
+ probs:
2314
+ A: 0.0356608468248
2315
+ C: 0.8930174595256
2316
+ G: 0.0356608468248
2317
+ T: 0.0356608468248
2318
+ track: nukes
2319
+ extras:
2320
+ ambiguous_char: N
2321
+ ambiguous_emission_prob: 0.25
2322
+ germline: C
2323
+ name: IGHV1-2_star_02_152
2324
+ transitions:
2325
+ IGHV1-2_star_02_153: 1.0
2326
+ - !!python/object:python.hmmwriter.State
2327
+ emissions:
2328
+ probs:
2329
+ A: 0.8930174595256
2330
+ C: 0.0356608468248
2331
+ G: 0.0356608468248
2332
+ T: 0.0356608468248
2333
+ track: nukes
2334
+ extras:
2335
+ ambiguous_char: N
2336
+ ambiguous_emission_prob: 0.25
2337
+ germline: A
2338
+ name: IGHV1-2_star_02_153
2339
+ transitions:
2340
+ IGHV1-2_star_02_154: 1.0
2341
+ - !!python/object:python.hmmwriter.State
2342
+ emissions:
2343
+ probs:
2344
+ A: 0.8930174595256
2345
+ C: 0.0356608468248
2346
+ G: 0.0356608468248
2347
+ T: 0.0356608468248
2348
+ track: nukes
2349
+ extras:
2350
+ ambiguous_char: N
2351
+ ambiguous_emission_prob: 0.25
2352
+ germline: A
2353
+ name: IGHV1-2_star_02_154
2354
+ transitions:
2355
+ IGHV1-2_star_02_155: 1.0
2356
+ - !!python/object:python.hmmwriter.State
2357
+ emissions:
2358
+ probs:
2359
+ A: 0.02857142857142857
2360
+ C: 0.8
2361
+ G: 0.02857142857142857
2362
+ T: 0.14285714285714288
2363
+ track: nukes
2364
+ extras:
2365
+ ambiguous_char: N
2366
+ ambiguous_emission_prob: 0.25
2367
+ germline: C
2368
+ name: IGHV1-2_star_02_155
2369
+ transitions:
2370
+ IGHV1-2_star_02_156: 1.0
2371
+ - !!python/object:python.hmmwriter.State
2372
+ emissions:
2373
+ probs:
2374
+ A: 0.0356608468248
2375
+ C: 0.8930174595256
2376
+ G: 0.0356608468248
2377
+ T: 0.0356608468248
2378
+ track: nukes
2379
+ extras:
2380
+ ambiguous_char: N
2381
+ ambiguous_emission_prob: 0.25
2382
+ germline: C
2383
+ name: IGHV1-2_star_02_156
2384
+ transitions:
2385
+ IGHV1-2_star_02_157: 1.0
2386
+ - !!python/object:python.hmmwriter.State
2387
+ emissions:
2388
+ probs:
2389
+ A: 0.0356608468248
2390
+ C: 0.8930174595256
2391
+ G: 0.0356608468248
2392
+ T: 0.0356608468248
2393
+ track: nukes
2394
+ extras:
2395
+ ambiguous_char: N
2396
+ ambiguous_emission_prob: 0.25
2397
+ germline: C
2398
+ name: IGHV1-2_star_02_157
2399
+ transitions:
2400
+ IGHV1-2_star_02_158: 1.0
2401
+ - !!python/object:python.hmmwriter.State
2402
+ emissions:
2403
+ probs:
2404
+ A: 0.0356608468248
2405
+ C: 0.0356608468248
2406
+ G: 0.0356608468248
2407
+ T: 0.8930174595256
2408
+ track: nukes
2409
+ extras:
2410
+ ambiguous_char: N
2411
+ ambiguous_emission_prob: 0.25
2412
+ germline: T
2413
+ name: IGHV1-2_star_02_158
2414
+ transitions:
2415
+ IGHV1-2_star_02_159: 1.0
2416
+ - !!python/object:python.hmmwriter.State
2417
+ emissions:
2418
+ probs:
2419
+ A: 0.84
2420
+ C: 0.05333333333333333
2421
+ G: 0.05333333333333333
2422
+ T: 0.05333333333333333
2423
+ track: nukes
2424
+ extras:
2425
+ ambiguous_char: N
2426
+ ambiguous_emission_prob: 0.25
2427
+ germline: A
2428
+ name: IGHV1-2_star_02_159
2429
+ transitions:
2430
+ IGHV1-2_star_02_160: 1.0
2431
+ - !!python/object:python.hmmwriter.State
2432
+ emissions:
2433
+ probs:
2434
+ A: 0.8
2435
+ C: 0.04000000000000001
2436
+ G: 0.12
2437
+ T: 0.04000000000000001
2438
+ track: nukes
2439
+ extras:
2440
+ ambiguous_char: N
2441
+ ambiguous_emission_prob: 0.25
2442
+ germline: A
2443
+ name: IGHV1-2_star_02_160
2444
+ transitions:
2445
+ IGHV1-2_star_02_161: 1.0
2446
+ - !!python/object:python.hmmwriter.State
2447
+ emissions:
2448
+ probs:
2449
+ A: 0.05333333333333333
2450
+ C: 0.84
2451
+ G: 0.05333333333333333
2452
+ T: 0.05333333333333333
2453
+ track: nukes
2454
+ extras:
2455
+ ambiguous_char: N
2456
+ ambiguous_emission_prob: 0.25
2457
+ germline: C
2458
+ name: IGHV1-2_star_02_161
2459
+ transitions:
2460
+ IGHV1-2_star_02_162: 1.0
2461
+ - !!python/object:python.hmmwriter.State
2462
+ emissions:
2463
+ probs:
2464
+ A: 0.8
2465
+ C: 0.04000000000000001
2466
+ G: 0.12
2467
+ T: 0.04000000000000001
2468
+ track: nukes
2469
+ extras:
2470
+ ambiguous_char: N
2471
+ ambiguous_emission_prob: 0.25
2472
+ germline: A
2473
+ name: IGHV1-2_star_02_162
2474
+ transitions:
2475
+ IGHV1-2_star_02_163: 1.0
2476
+ - !!python/object:python.hmmwriter.State
2477
+ emissions:
2478
+ probs:
2479
+ A: 0.0356608468248
2480
+ C: 0.0356608468248
2481
+ G: 0.8930174595256
2482
+ T: 0.0356608468248
2483
+ track: nukes
2484
+ extras:
2485
+ ambiguous_char: N
2486
+ ambiguous_emission_prob: 0.25
2487
+ germline: G
2488
+ name: IGHV1-2_star_02_163
2489
+ transitions:
2490
+ IGHV1-2_star_02_164: 1.0
2491
+ - !!python/object:python.hmmwriter.State
2492
+ emissions:
2493
+ probs:
2494
+ A: 0.03666666666666667
2495
+ C: 0.03666666666666667
2496
+ G: 0.03666666666666667
2497
+ T: 0.89
2498
+ track: nukes
2499
+ extras:
2500
+ ambiguous_char: N
2501
+ ambiguous_emission_prob: 0.25
2502
+ germline: T
2503
+ name: IGHV1-2_star_02_164
2504
+ transitions:
2505
+ IGHV1-2_star_02_165: 1.0
2506
+ - !!python/object:python.hmmwriter.State
2507
+ emissions:
2508
+ probs:
2509
+ A: 0.0356608468248
2510
+ C: 0.0356608468248
2511
+ G: 0.8930174595256
2512
+ T: 0.0356608468248
2513
+ track: nukes
2514
+ extras:
2515
+ ambiguous_char: N
2516
+ ambiguous_emission_prob: 0.25
2517
+ germline: G
2518
+ name: IGHV1-2_star_02_165
2519
+ transitions:
2520
+ IGHV1-2_star_02_166: 1.0
2521
+ - !!python/object:python.hmmwriter.State
2522
+ emissions:
2523
+ probs:
2524
+ A: 0.0356608468248
2525
+ C: 0.0356608468248
2526
+ G: 0.8930174595256
2527
+ T: 0.0356608468248
2528
+ track: nukes
2529
+ extras:
2530
+ ambiguous_char: N
2531
+ ambiguous_emission_prob: 0.25
2532
+ germline: G
2533
+ name: IGHV1-2_star_02_166
2534
+ transitions:
2535
+ IGHV1-2_star_02_167: 1.0
2536
+ - !!python/object:python.hmmwriter.State
2537
+ emissions:
2538
+ probs:
2539
+ A: 0.03666666666666667
2540
+ C: 0.03666666666666667
2541
+ G: 0.03666666666666667
2542
+ T: 0.89
2543
+ track: nukes
2544
+ extras:
2545
+ ambiguous_char: N
2546
+ ambiguous_emission_prob: 0.25
2547
+ germline: T
2548
+ name: IGHV1-2_star_02_167
2549
+ transitions:
2550
+ IGHV1-2_star_02_168: 1.0
2551
+ - !!python/object:python.hmmwriter.State
2552
+ emissions:
2553
+ probs:
2554
+ A: 0.0356608468248
2555
+ C: 0.0356608468248
2556
+ G: 0.8930174595256
2557
+ T: 0.0356608468248
2558
+ track: nukes
2559
+ extras:
2560
+ ambiguous_char: N
2561
+ ambiguous_emission_prob: 0.25
2562
+ germline: G
2563
+ name: IGHV1-2_star_02_168
2564
+ transitions:
2565
+ IGHV1-2_star_02_169: 1.0
2566
+ - !!python/object:python.hmmwriter.State
2567
+ emissions:
2568
+ probs:
2569
+ A: 0.0356608468248
2570
+ C: 0.0356608468248
2571
+ G: 0.8930174595256
2572
+ T: 0.0356608468248
2573
+ track: nukes
2574
+ extras:
2575
+ ambiguous_char: N
2576
+ ambiguous_emission_prob: 0.25
2577
+ germline: G
2578
+ name: IGHV1-2_star_02_169
2579
+ transitions:
2580
+ IGHV1-2_star_02_170: 1.0
2581
+ - !!python/object:python.hmmwriter.State
2582
+ emissions:
2583
+ probs:
2584
+ A: 0.05333333333333333
2585
+ C: 0.84
2586
+ G: 0.05333333333333333
2587
+ T: 0.05333333333333333
2588
+ track: nukes
2589
+ extras:
2590
+ ambiguous_char: N
2591
+ ambiguous_emission_prob: 0.25
2592
+ germline: C
2593
+ name: IGHV1-2_star_02_170
2594
+ transitions:
2595
+ IGHV1-2_star_02_171: 1.0
2596
+ - !!python/object:python.hmmwriter.State
2597
+ emissions:
2598
+ probs:
2599
+ A: 0.84
2600
+ C: 0.04
2601
+ G: 0.08
2602
+ T: 0.04
2603
+ track: nukes
2604
+ extras:
2605
+ ambiguous_char: N
2606
+ ambiguous_emission_prob: 0.25
2607
+ germline: A
2608
+ name: IGHV1-2_star_02_171
2609
+ transitions:
2610
+ IGHV1-2_star_02_172: 1.0
2611
+ - !!python/object:python.hmmwriter.State
2612
+ emissions:
2613
+ probs:
2614
+ A: 0.025
2615
+ C: 0.8
2616
+ G: 0.025
2617
+ T: 0.15000000000000002
2618
+ track: nukes
2619
+ extras:
2620
+ ambiguous_char: N
2621
+ ambiguous_emission_prob: 0.25
2622
+ germline: C
2623
+ name: IGHV1-2_star_02_172
2624
+ transitions:
2625
+ IGHV1-2_star_02_173: 1.0
2626
+ - !!python/object:python.hmmwriter.State
2627
+ emissions:
2628
+ probs:
2629
+ A: 0.84
2630
+ C: 0.05333333333333333
2631
+ G: 0.05333333333333333
2632
+ T: 0.05333333333333333
2633
+ track: nukes
2634
+ extras:
2635
+ ambiguous_char: N
2636
+ ambiguous_emission_prob: 0.25
2637
+ germline: A
2638
+ name: IGHV1-2_star_02_173
2639
+ transitions:
2640
+ IGHV1-2_star_02_174: 1.0
2641
+ - !!python/object:python.hmmwriter.State
2642
+ emissions:
2643
+ probs:
2644
+ A: 0.8930174595256
2645
+ C: 0.0356608468248
2646
+ G: 0.0356608468248
2647
+ T: 0.0356608468248
2648
+ track: nukes
2649
+ extras:
2650
+ ambiguous_char: N
2651
+ ambiguous_emission_prob: 0.25
2652
+ germline: A
2653
+ name: IGHV1-2_star_02_174
2654
+ transitions:
2655
+ IGHV1-2_star_02_175: 1.0
2656
+ - !!python/object:python.hmmwriter.State
2657
+ emissions:
2658
+ probs:
2659
+ A: 0.84
2660
+ C: 0.04
2661
+ G: 0.04
2662
+ T: 0.08
2663
+ track: nukes
2664
+ extras:
2665
+ ambiguous_char: N
2666
+ ambiguous_emission_prob: 0.25
2667
+ germline: A
2668
+ name: IGHV1-2_star_02_175
2669
+ transitions:
2670
+ IGHV1-2_star_02_176: 1.0
2671
+ - !!python/object:python.hmmwriter.State
2672
+ emissions:
2673
+ probs:
2674
+ A: 0.04
2675
+ C: 0.84
2676
+ G: 0.04
2677
+ T: 0.08
2678
+ track: nukes
2679
+ extras:
2680
+ ambiguous_char: N
2681
+ ambiguous_emission_prob: 0.25
2682
+ germline: C
2683
+ name: IGHV1-2_star_02_176
2684
+ transitions:
2685
+ IGHV1-2_star_02_177: 1.0
2686
+ - !!python/object:python.hmmwriter.State
2687
+ emissions:
2688
+ probs:
2689
+ A: 0.0356608468248
2690
+ C: 0.0356608468248
2691
+ G: 0.0356608468248
2692
+ T: 0.8930174595256
2693
+ track: nukes
2694
+ extras:
2695
+ ambiguous_char: N
2696
+ ambiguous_emission_prob: 0.25
2697
+ germline: T
2698
+ name: IGHV1-2_star_02_177
2699
+ transitions:
2700
+ IGHV1-2_star_02_178: 1.0
2701
+ - !!python/object:python.hmmwriter.State
2702
+ emissions:
2703
+ probs:
2704
+ A: 0.89
2705
+ C: 0.03666666666666667
2706
+ G: 0.03666666666666667
2707
+ T: 0.03666666666666667
2708
+ track: nukes
2709
+ extras:
2710
+ ambiguous_char: N
2711
+ ambiguous_emission_prob: 0.25
2712
+ germline: A
2713
+ name: IGHV1-2_star_02_178
2714
+ transitions:
2715
+ IGHV1-2_star_02_179: 1.0
2716
+ - !!python/object:python.hmmwriter.State
2717
+ emissions:
2718
+ probs:
2719
+ A: 0.04
2720
+ C: 0.04
2721
+ G: 0.08
2722
+ T: 0.84
2723
+ track: nukes
2724
+ extras:
2725
+ ambiguous_char: N
2726
+ ambiguous_emission_prob: 0.25
2727
+ germline: T
2728
+ name: IGHV1-2_star_02_179
2729
+ transitions:
2730
+ IGHV1-2_star_02_180: 1.0
2731
+ - !!python/object:python.hmmwriter.State
2732
+ emissions:
2733
+ probs:
2734
+ A: 0.1
2735
+ C: 0.05
2736
+ G: 0.8
2737
+ T: 0.05
2738
+ track: nukes
2739
+ extras:
2740
+ ambiguous_char: N
2741
+ ambiguous_emission_prob: 0.25
2742
+ germline: G
2743
+ name: IGHV1-2_star_02_180
2744
+ transitions:
2745
+ IGHV1-2_star_02_181: 1.0
2746
+ - !!python/object:python.hmmwriter.State
2747
+ emissions:
2748
+ probs:
2749
+ A: 0.0356608468248
2750
+ C: 0.8930174595256
2751
+ G: 0.0356608468248
2752
+ T: 0.0356608468248
2753
+ track: nukes
2754
+ extras:
2755
+ ambiguous_char: N
2756
+ ambiguous_emission_prob: 0.25
2757
+ germline: C
2758
+ name: IGHV1-2_star_02_181
2759
+ transitions:
2760
+ IGHV1-2_star_02_182: 1.0
2761
+ - !!python/object:python.hmmwriter.State
2762
+ emissions:
2763
+ probs:
2764
+ A: 0.84
2765
+ C: 0.05333333333333333
2766
+ G: 0.05333333333333333
2767
+ T: 0.05333333333333333
2768
+ track: nukes
2769
+ extras:
2770
+ ambiguous_char: N
2771
+ ambiguous_emission_prob: 0.25
2772
+ germline: A
2773
+ name: IGHV1-2_star_02_182
2774
+ transitions:
2775
+ IGHV1-2_star_02_183: 1.0
2776
+ - !!python/object:python.hmmwriter.State
2777
+ emissions:
2778
+ probs:
2779
+ A: 0.08000000000000002
2780
+ C: 0.8
2781
+ G: 0.04000000000000001
2782
+ T: 0.08000000000000002
2783
+ track: nukes
2784
+ extras:
2785
+ ambiguous_char: N
2786
+ ambiguous_emission_prob: 0.25
2787
+ germline: C
2788
+ name: IGHV1-2_star_02_183
2789
+ transitions:
2790
+ IGHV1-2_star_02_184: 1.0
2791
+ - !!python/object:python.hmmwriter.State
2792
+ emissions:
2793
+ probs:
2794
+ A: 0.8
2795
+ C: 0.05
2796
+ G: 0.1
2797
+ T: 0.05
2798
+ track: nukes
2799
+ extras:
2800
+ ambiguous_char: N
2801
+ ambiguous_emission_prob: 0.25
2802
+ germline: A
2803
+ name: IGHV1-2_star_02_184
2804
+ transitions:
2805
+ IGHV1-2_star_02_185: 1.0
2806
+ - !!python/object:python.hmmwriter.State
2807
+ emissions:
2808
+ probs:
2809
+ A: 0.03666666666666667
2810
+ C: 0.03666666666666667
2811
+ G: 0.89
2812
+ T: 0.03666666666666667
2813
+ track: nukes
2814
+ extras:
2815
+ ambiguous_char: N
2816
+ ambiguous_emission_prob: 0.25
2817
+ germline: G
2818
+ name: IGHV1-2_star_02_185
2819
+ transitions:
2820
+ IGHV1-2_star_02_186: 1.0
2821
+ - !!python/object:python.hmmwriter.State
2822
+ emissions:
2823
+ probs:
2824
+ A: 0.8930174595256
2825
+ C: 0.0356608468248
2826
+ G: 0.0356608468248
2827
+ T: 0.0356608468248
2828
+ track: nukes
2829
+ extras:
2830
+ ambiguous_char: N
2831
+ ambiguous_emission_prob: 0.25
2832
+ germline: A
2833
+ name: IGHV1-2_star_02_186
2834
+ transitions:
2835
+ IGHV1-2_star_02_187: 1.0
2836
+ - !!python/object:python.hmmwriter.State
2837
+ emissions:
2838
+ probs:
2839
+ A: 0.8
2840
+ C: 0.12
2841
+ G: 0.04000000000000001
2842
+ T: 0.04000000000000001
2843
+ track: nukes
2844
+ extras:
2845
+ ambiguous_char: N
2846
+ ambiguous_emission_prob: 0.25
2847
+ germline: A
2848
+ name: IGHV1-2_star_02_187
2849
+ transitions:
2850
+ IGHV1-2_star_02_188: 1.0
2851
+ - !!python/object:python.hmmwriter.State
2852
+ emissions:
2853
+ probs:
2854
+ A: 0.04000000000000001
2855
+ C: 0.08000000000000002
2856
+ G: 0.8
2857
+ T: 0.08000000000000002
2858
+ track: nukes
2859
+ extras:
2860
+ ambiguous_char: N
2861
+ ambiguous_emission_prob: 0.25
2862
+ germline: G
2863
+ name: IGHV1-2_star_02_188
2864
+ transitions:
2865
+ IGHV1-2_star_02_189: 1.0
2866
+ - !!python/object:python.hmmwriter.State
2867
+ emissions:
2868
+ probs:
2869
+ A: 0.0356608468248
2870
+ C: 0.0356608468248
2871
+ G: 0.0356608468248
2872
+ T: 0.8930174595256
2873
+ track: nukes
2874
+ extras:
2875
+ ambiguous_char: N
2876
+ ambiguous_emission_prob: 0.25
2877
+ germline: T
2878
+ name: IGHV1-2_star_02_189
2879
+ transitions:
2880
+ IGHV1-2_star_02_190: 1.0
2881
+ - !!python/object:python.hmmwriter.State
2882
+ emissions:
2883
+ probs:
2884
+ A: 0.0356608468248
2885
+ C: 0.0356608468248
2886
+ G: 0.0356608468248
2887
+ T: 0.8930174595256
2888
+ track: nukes
2889
+ extras:
2890
+ ambiguous_char: N
2891
+ ambiguous_emission_prob: 0.25
2892
+ germline: T
2893
+ name: IGHV1-2_star_02_190
2894
+ transitions:
2895
+ IGHV1-2_star_02_191: 1.0
2896
+ - !!python/object:python.hmmwriter.State
2897
+ emissions:
2898
+ probs:
2899
+ A: 0.04000000000000001
2900
+ C: 0.12
2901
+ G: 0.04000000000000001
2902
+ T: 0.8
2903
+ track: nukes
2904
+ extras:
2905
+ ambiguous_char: N
2906
+ ambiguous_emission_prob: 0.25
2907
+ germline: T
2908
+ name: IGHV1-2_star_02_191
2909
+ transitions:
2910
+ IGHV1-2_star_02_192: 1.0
2911
+ - !!python/object:python.hmmwriter.State
2912
+ emissions:
2913
+ probs:
2914
+ A: 0.0356608468248
2915
+ C: 0.8930174595256
2916
+ G: 0.0356608468248
2917
+ T: 0.0356608468248
2918
+ track: nukes
2919
+ extras:
2920
+ ambiguous_char: N
2921
+ ambiguous_emission_prob: 0.25
2922
+ germline: C
2923
+ name: IGHV1-2_star_02_192
2924
+ transitions:
2925
+ IGHV1-2_star_02_193: 1.0
2926
+ - !!python/object:python.hmmwriter.State
2927
+ emissions:
2928
+ probs:
2929
+ A: 0.8
2930
+ C: 0.1
2931
+ G: 0.05
2932
+ T: 0.05
2933
+ track: nukes
2934
+ extras:
2935
+ ambiguous_char: N
2936
+ ambiguous_emission_prob: 0.25
2937
+ germline: A
2938
+ name: IGHV1-2_star_02_193
2939
+ transitions:
2940
+ IGHV1-2_star_02_194: 1.0
2941
+ - !!python/object:python.hmmwriter.State
2942
+ emissions:
2943
+ probs:
2944
+ A: 0.12
2945
+ C: 0.04000000000000001
2946
+ G: 0.8
2947
+ T: 0.04000000000000001
2948
+ track: nukes
2949
+ extras:
2950
+ ambiguous_char: N
2951
+ ambiguous_emission_prob: 0.25
2952
+ germline: G
2953
+ name: IGHV1-2_star_02_194
2954
+ transitions:
2955
+ IGHV1-2_star_02_195: 1.0
2956
+ - !!python/object:python.hmmwriter.State
2957
+ emissions:
2958
+ probs:
2959
+ A: 0.03666666666666667
2960
+ C: 0.03666666666666667
2961
+ G: 0.89
2962
+ T: 0.03666666666666667
2963
+ track: nukes
2964
+ extras:
2965
+ ambiguous_char: N
2966
+ ambiguous_emission_prob: 0.25
2967
+ germline: G
2968
+ name: IGHV1-2_star_02_195
2969
+ transitions:
2970
+ IGHV1-2_star_02_196: 1.0
2971
+ - !!python/object:python.hmmwriter.State
2972
+ emissions:
2973
+ probs:
2974
+ A: 0.0356608468248
2975
+ C: 0.0356608468248
2976
+ G: 0.8930174595256
2977
+ T: 0.0356608468248
2978
+ track: nukes
2979
+ extras:
2980
+ ambiguous_char: N
2981
+ ambiguous_emission_prob: 0.25
2982
+ germline: G
2983
+ name: IGHV1-2_star_02_196
2984
+ transitions:
2985
+ IGHV1-2_star_02_197: 1.0
2986
+ - !!python/object:python.hmmwriter.State
2987
+ emissions:
2988
+ probs:
2989
+ A: 0.0356608468248
2990
+ C: 0.8930174595256
2991
+ G: 0.0356608468248
2992
+ T: 0.0356608468248
2993
+ track: nukes
2994
+ extras:
2995
+ ambiguous_char: N
2996
+ ambiguous_emission_prob: 0.25
2997
+ germline: C
2998
+ name: IGHV1-2_star_02_197
2999
+ transitions:
3000
+ IGHV1-2_star_02_198: 1.0
3001
+ - !!python/object:python.hmmwriter.State
3002
+ emissions:
3003
+ probs:
3004
+ A: 0.89
3005
+ C: 0.03666666666666667
3006
+ G: 0.03666666666666667
3007
+ T: 0.03666666666666667
3008
+ track: nukes
3009
+ extras:
3010
+ ambiguous_char: N
3011
+ ambiguous_emission_prob: 0.25
3012
+ germline: A
3013
+ name: IGHV1-2_star_02_198
3014
+ transitions:
3015
+ IGHV1-2_star_02_199: 1.0
3016
+ - !!python/object:python.hmmwriter.State
3017
+ emissions:
3018
+ probs:
3019
+ A: 0.04
3020
+ C: 0.08
3021
+ G: 0.84
3022
+ T: 0.04
3023
+ track: nukes
3024
+ extras:
3025
+ ambiguous_char: N
3026
+ ambiguous_emission_prob: 0.25
3027
+ germline: G
3028
+ name: IGHV1-2_star_02_199
3029
+ transitions:
3030
+ IGHV1-2_star_02_200: 1.0
3031
+ - !!python/object:python.hmmwriter.State
3032
+ emissions:
3033
+ probs:
3034
+ A: 0.125
3035
+ C: 0.05
3036
+ G: 0.8
3037
+ T: 0.025
3038
+ track: nukes
3039
+ extras:
3040
+ ambiguous_char: N
3041
+ ambiguous_emission_prob: 0.25
3042
+ germline: G
3043
+ name: IGHV1-2_star_02_200
3044
+ transitions:
3045
+ IGHV1-2_star_02_201: 1.0
3046
+ - !!python/object:python.hmmwriter.State
3047
+ emissions:
3048
+ probs:
3049
+ A: 0.05
3050
+ C: 0.05
3051
+ G: 0.8
3052
+ T: 0.1
3053
+ track: nukes
3054
+ extras:
3055
+ ambiguous_char: N
3056
+ ambiguous_emission_prob: 0.25
3057
+ germline: G
3058
+ name: IGHV1-2_star_02_201
3059
+ transitions:
3060
+ IGHV1-2_star_02_202: 1.0
3061
+ - !!python/object:python.hmmwriter.State
3062
+ emissions:
3063
+ probs:
3064
+ A: 0.0356608468248
3065
+ C: 0.0356608468248
3066
+ G: 0.0356608468248
3067
+ T: 0.8930174595256
3068
+ track: nukes
3069
+ extras:
3070
+ ambiguous_char: N
3071
+ ambiguous_emission_prob: 0.25
3072
+ germline: T
3073
+ name: IGHV1-2_star_02_202
3074
+ transitions:
3075
+ IGHV1-2_star_02_203: 1.0
3076
+ - !!python/object:python.hmmwriter.State
3077
+ emissions:
3078
+ probs:
3079
+ A: 0.03666666666666667
3080
+ C: 0.89
3081
+ G: 0.03666666666666667
3082
+ T: 0.03666666666666667
3083
+ track: nukes
3084
+ extras:
3085
+ ambiguous_char: N
3086
+ ambiguous_emission_prob: 0.25
3087
+ germline: C
3088
+ name: IGHV1-2_star_02_203
3089
+ transitions:
3090
+ IGHV1-2_star_02_204: 1.0
3091
+ - !!python/object:python.hmmwriter.State
3092
+ emissions:
3093
+ probs:
3094
+ A: 0.89
3095
+ C: 0.03666666666666667
3096
+ G: 0.03666666666666667
3097
+ T: 0.03666666666666667
3098
+ track: nukes
3099
+ extras:
3100
+ ambiguous_char: N
3101
+ ambiguous_emission_prob: 0.25
3102
+ germline: A
3103
+ name: IGHV1-2_star_02_204
3104
+ transitions:
3105
+ IGHV1-2_star_02_205: 1.0
3106
+ - !!python/object:python.hmmwriter.State
3107
+ emissions:
3108
+ probs:
3109
+ A: 0.0356608468248
3110
+ C: 0.8930174595256
3111
+ G: 0.0356608468248
3112
+ T: 0.0356608468248
3113
+ track: nukes
3114
+ extras:
3115
+ ambiguous_char: N
3116
+ ambiguous_emission_prob: 0.25
3117
+ germline: C
3118
+ name: IGHV1-2_star_02_205
3119
+ transitions:
3120
+ IGHV1-2_star_02_206: 1.0
3121
+ - !!python/object:python.hmmwriter.State
3122
+ emissions:
3123
+ probs:
3124
+ A: 0.04
3125
+ C: 0.84
3126
+ G: 0.04
3127
+ T: 0.08
3128
+ track: nukes
3129
+ extras:
3130
+ ambiguous_char: N
3131
+ ambiguous_emission_prob: 0.25
3132
+ germline: C
3133
+ name: IGHV1-2_star_02_206
3134
+ transitions:
3135
+ IGHV1-2_star_02_207: 1.0
3136
+ - !!python/object:python.hmmwriter.State
3137
+ emissions:
3138
+ probs:
3139
+ A: 0.84
3140
+ C: 0.04
3141
+ G: 0.08
3142
+ T: 0.04
3143
+ track: nukes
3144
+ extras:
3145
+ ambiguous_char: N
3146
+ ambiguous_emission_prob: 0.25
3147
+ germline: A
3148
+ name: IGHV1-2_star_02_207
3149
+ transitions:
3150
+ IGHV1-2_star_02_208: 1.0
3151
+ - !!python/object:python.hmmwriter.State
3152
+ emissions:
3153
+ probs:
3154
+ A: 0.0356608468248
3155
+ C: 0.0356608468248
3156
+ G: 0.0356608468248
3157
+ T: 0.8930174595256
3158
+ track: nukes
3159
+ extras:
3160
+ ambiguous_char: N
3161
+ ambiguous_emission_prob: 0.25
3162
+ germline: T
3163
+ name: IGHV1-2_star_02_208
3164
+ transitions:
3165
+ IGHV1-2_star_02_209: 1.0
3166
+ - !!python/object:python.hmmwriter.State
3167
+ emissions:
3168
+ probs:
3169
+ A: 0.03666666666666667
3170
+ C: 0.03666666666666667
3171
+ G: 0.89
3172
+ T: 0.03666666666666667
3173
+ track: nukes
3174
+ extras:
3175
+ ambiguous_char: N
3176
+ ambiguous_emission_prob: 0.25
3177
+ germline: G
3178
+ name: IGHV1-2_star_02_209
3179
+ transitions:
3180
+ IGHV1-2_star_02_210: 1.0
3181
+ - !!python/object:python.hmmwriter.State
3182
+ emissions:
3183
+ probs:
3184
+ A: 0.8
3185
+ C: 0.04000000000000001
3186
+ G: 0.04000000000000001
3187
+ T: 0.12
3188
+ track: nukes
3189
+ extras:
3190
+ ambiguous_char: N
3191
+ ambiguous_emission_prob: 0.25
3192
+ germline: A
3193
+ name: IGHV1-2_star_02_210
3194
+ transitions:
3195
+ IGHV1-2_star_02_211: 1.0
3196
+ - !!python/object:python.hmmwriter.State
3197
+ emissions:
3198
+ probs:
3199
+ A: 0.03333333333333333
3200
+ C: 0.8
3201
+ G: 0.03333333333333333
3202
+ T: 0.13333333333333333
3203
+ track: nukes
3204
+ extras:
3205
+ ambiguous_char: N
3206
+ ambiguous_emission_prob: 0.25
3207
+ germline: C
3208
+ name: IGHV1-2_star_02_211
3209
+ transitions:
3210
+ IGHV1-2_star_02_212: 1.0
3211
+ - !!python/object:python.hmmwriter.State
3212
+ emissions:
3213
+ probs:
3214
+ A: 0.12
3215
+ C: 0.8
3216
+ G: 0.04000000000000001
3217
+ T: 0.04000000000000001
3218
+ track: nukes
3219
+ extras:
3220
+ ambiguous_char: N
3221
+ ambiguous_emission_prob: 0.25
3222
+ germline: C
3223
+ name: IGHV1-2_star_02_212
3224
+ transitions:
3225
+ IGHV1-2_star_02_213: 1.0
3226
+ - !!python/object:python.hmmwriter.State
3227
+ emissions:
3228
+ probs:
3229
+ A: 0.8
3230
+ C: 0.1
3231
+ G: 0.05
3232
+ T: 0.05
3233
+ track: nukes
3234
+ extras:
3235
+ ambiguous_char: N
3236
+ ambiguous_emission_prob: 0.25
3237
+ germline: A
3238
+ name: IGHV1-2_star_02_213
3239
+ transitions:
3240
+ IGHV1-2_star_02_214: 1.0
3241
+ - !!python/object:python.hmmwriter.State
3242
+ emissions:
3243
+ probs:
3244
+ A: 0.03666666666666667
3245
+ C: 0.03666666666666667
3246
+ G: 0.89
3247
+ T: 0.03666666666666667
3248
+ track: nukes
3249
+ extras:
3250
+ ambiguous_char: N
3251
+ ambiguous_emission_prob: 0.25
3252
+ germline: G
3253
+ name: IGHV1-2_star_02_214
3254
+ transitions:
3255
+ IGHV1-2_star_02_215: 1.0
3256
+ - !!python/object:python.hmmwriter.State
3257
+ emissions:
3258
+ probs:
3259
+ A: 0.05
3260
+ C: 0.05
3261
+ G: 0.8
3262
+ T: 0.1
3263
+ track: nukes
3264
+ extras:
3265
+ ambiguous_char: N
3266
+ ambiguous_emission_prob: 0.25
3267
+ germline: G
3268
+ name: IGHV1-2_star_02_215
3269
+ transitions:
3270
+ IGHV1-2_star_02_216: 1.0
3271
+ - !!python/object:python.hmmwriter.State
3272
+ emissions:
3273
+ probs:
3274
+ A: 0.0356608468248
3275
+ C: 0.0356608468248
3276
+ G: 0.8930174595256
3277
+ T: 0.0356608468248
3278
+ track: nukes
3279
+ extras:
3280
+ ambiguous_char: N
3281
+ ambiguous_emission_prob: 0.25
3282
+ germline: G
3283
+ name: IGHV1-2_star_02_216
3284
+ transitions:
3285
+ IGHV1-2_star_02_217: 1.0
3286
+ - !!python/object:python.hmmwriter.State
3287
+ emissions:
3288
+ probs:
3289
+ A: 0.89
3290
+ C: 0.03666666666666667
3291
+ G: 0.03666666666666667
3292
+ T: 0.03666666666666667
3293
+ track: nukes
3294
+ extras:
3295
+ ambiguous_char: N
3296
+ ambiguous_emission_prob: 0.25
3297
+ germline: A
3298
+ name: IGHV1-2_star_02_217
3299
+ transitions:
3300
+ IGHV1-2_star_02_218: 1.0
3301
+ - !!python/object:python.hmmwriter.State
3302
+ emissions:
3303
+ probs:
3304
+ A: 0.03666666666666667
3305
+ C: 0.89
3306
+ G: 0.03666666666666667
3307
+ T: 0.03666666666666667
3308
+ track: nukes
3309
+ extras:
3310
+ ambiguous_char: N
3311
+ ambiguous_emission_prob: 0.25
3312
+ germline: C
3313
+ name: IGHV1-2_star_02_218
3314
+ transitions:
3315
+ IGHV1-2_star_02_219: 1.0
3316
+ - !!python/object:python.hmmwriter.State
3317
+ emissions:
3318
+ probs:
3319
+ A: 0.89
3320
+ C: 0.03666666666666667
3321
+ G: 0.03666666666666667
3322
+ T: 0.03666666666666667
3323
+ track: nukes
3324
+ extras:
3325
+ ambiguous_char: N
3326
+ ambiguous_emission_prob: 0.25
3327
+ germline: A
3328
+ name: IGHV1-2_star_02_219
3329
+ transitions:
3330
+ IGHV1-2_star_02_220: 1.0
3331
+ - !!python/object:python.hmmwriter.State
3332
+ emissions:
3333
+ probs:
3334
+ A: 0.1
3335
+ C: 0.8
3336
+ G: 0.05
3337
+ T: 0.05
3338
+ track: nukes
3339
+ extras:
3340
+ ambiguous_char: N
3341
+ ambiguous_emission_prob: 0.25
3342
+ germline: C
3343
+ name: IGHV1-2_star_02_220
3344
+ transitions:
3345
+ IGHV1-2_star_02_221: 1.0
3346
+ - !!python/object:python.hmmwriter.State
3347
+ emissions:
3348
+ probs:
3349
+ A: 0.03666666666666667
3350
+ C: 0.03666666666666667
3351
+ G: 0.89
3352
+ T: 0.03666666666666667
3353
+ track: nukes
3354
+ extras:
3355
+ ambiguous_char: N
3356
+ ambiguous_emission_prob: 0.25
3357
+ germline: G
3358
+ name: IGHV1-2_star_02_221
3359
+ transitions:
3360
+ IGHV1-2_star_02_222: 1.0
3361
+ - !!python/object:python.hmmwriter.State
3362
+ emissions:
3363
+ probs:
3364
+ A: 0.1
3365
+ C: 0.05
3366
+ G: 0.05
3367
+ T: 0.8
3368
+ track: nukes
3369
+ extras:
3370
+ ambiguous_char: N
3371
+ ambiguous_emission_prob: 0.25
3372
+ germline: T
3373
+ name: IGHV1-2_star_02_222
3374
+ transitions:
3375
+ IGHV1-2_star_02_223: 1.0
3376
+ - !!python/object:python.hmmwriter.State
3377
+ emissions:
3378
+ probs:
3379
+ A: 0.04
3380
+ C: 0.84
3381
+ G: 0.04
3382
+ T: 0.08
3383
+ track: nukes
3384
+ extras:
3385
+ ambiguous_char: N
3386
+ ambiguous_emission_prob: 0.25
3387
+ germline: C
3388
+ name: IGHV1-2_star_02_223
3389
+ transitions:
3390
+ IGHV1-2_star_02_224: 1.0
3391
+ - !!python/object:python.hmmwriter.State
3392
+ emissions:
3393
+ probs:
3394
+ A: 0.05
3395
+ C: 0.8
3396
+ G: 0.1
3397
+ T: 0.05
3398
+ track: nukes
3399
+ extras:
3400
+ ambiguous_char: N
3401
+ ambiguous_emission_prob: 0.25
3402
+ germline: C
3403
+ name: IGHV1-2_star_02_224
3404
+ transitions:
3405
+ IGHV1-2_star_02_225: 1.0
3406
+ - !!python/object:python.hmmwriter.State
3407
+ emissions:
3408
+ probs:
3409
+ A: 0.8
3410
+ C: 0.06666666666666667
3411
+ G: 0.1
3412
+ T: 0.03333333333333333
3413
+ track: nukes
3414
+ extras:
3415
+ ambiguous_char: N
3416
+ ambiguous_emission_prob: 0.25
3417
+ germline: A
3418
+ name: IGHV1-2_star_02_225
3419
+ transitions:
3420
+ IGHV1-2_star_02_226: 1.0
3421
+ - !!python/object:python.hmmwriter.State
3422
+ emissions:
3423
+ probs:
3424
+ A: 0.05333333333333333
3425
+ C: 0.05333333333333333
3426
+ G: 0.05333333333333333
3427
+ T: 0.84
3428
+ track: nukes
3429
+ extras:
3430
+ ambiguous_char: N
3431
+ ambiguous_emission_prob: 0.25
3432
+ germline: T
3433
+ name: IGHV1-2_star_02_226
3434
+ transitions:
3435
+ IGHV1-2_star_02_227: 1.0
3436
+ - !!python/object:python.hmmwriter.State
3437
+ emissions:
3438
+ probs:
3439
+ A: 0.05333333333333333
3440
+ C: 0.84
3441
+ G: 0.05333333333333333
3442
+ T: 0.05333333333333333
3443
+ track: nukes
3444
+ extras:
3445
+ ambiguous_char: N
3446
+ ambiguous_emission_prob: 0.25
3447
+ germline: C
3448
+ name: IGHV1-2_star_02_227
3449
+ transitions:
3450
+ IGHV1-2_star_02_228: 1.0
3451
+ - !!python/object:python.hmmwriter.State
3452
+ emissions:
3453
+ probs:
3454
+ A: 0.89
3455
+ C: 0.03666666666666667
3456
+ G: 0.03666666666666667
3457
+ T: 0.03666666666666667
3458
+ track: nukes
3459
+ extras:
3460
+ ambiguous_char: N
3461
+ ambiguous_emission_prob: 0.25
3462
+ germline: A
3463
+ name: IGHV1-2_star_02_228
3464
+ transitions:
3465
+ IGHV1-2_star_02_229: 1.0
3466
+ - !!python/object:python.hmmwriter.State
3467
+ emissions:
3468
+ probs:
3469
+ A: 0.05333333333333333
3470
+ C: 0.05333333333333333
3471
+ G: 0.84
3472
+ T: 0.05333333333333333
3473
+ track: nukes
3474
+ extras:
3475
+ ambiguous_char: N
3476
+ ambiguous_emission_prob: 0.25
3477
+ germline: G
3478
+ name: IGHV1-2_star_02_229
3479
+ transitions:
3480
+ IGHV1-2_star_02_230: 1.0
3481
+ - !!python/object:python.hmmwriter.State
3482
+ emissions:
3483
+ probs:
3484
+ A: 0.04
3485
+ C: 0.84
3486
+ G: 0.04
3487
+ T: 0.08
3488
+ track: nukes
3489
+ extras:
3490
+ ambiguous_char: N
3491
+ ambiguous_emission_prob: 0.25
3492
+ germline: C
3493
+ name: IGHV1-2_star_02_230
3494
+ transitions:
3495
+ IGHV1-2_star_02_231: 1.0
3496
+ - !!python/object:python.hmmwriter.State
3497
+ emissions:
3498
+ probs:
3499
+ A: 0.8930174595256
3500
+ C: 0.0356608468248
3501
+ G: 0.0356608468248
3502
+ T: 0.0356608468248
3503
+ track: nukes
3504
+ extras:
3505
+ ambiguous_char: N
3506
+ ambiguous_emission_prob: 0.25
3507
+ germline: A
3508
+ name: IGHV1-2_star_02_231
3509
+ transitions:
3510
+ IGHV1-2_star_02_232: 1.0
3511
+ - !!python/object:python.hmmwriter.State
3512
+ emissions:
3513
+ probs:
3514
+ A: 0.0356608468248
3515
+ C: 0.8930174595256
3516
+ G: 0.0356608468248
3517
+ T: 0.0356608468248
3518
+ track: nukes
3519
+ extras:
3520
+ ambiguous_char: N
3521
+ ambiguous_emission_prob: 0.25
3522
+ germline: C
3523
+ name: IGHV1-2_star_02_232
3524
+ transitions:
3525
+ IGHV1-2_star_02_233: 1.0
3526
+ - !!python/object:python.hmmwriter.State
3527
+ emissions:
3528
+ probs:
3529
+ A: 0.8930174595256
3530
+ C: 0.0356608468248
3531
+ G: 0.0356608468248
3532
+ T: 0.0356608468248
3533
+ track: nukes
3534
+ extras:
3535
+ ambiguous_char: N
3536
+ ambiguous_emission_prob: 0.25
3537
+ germline: A
3538
+ name: IGHV1-2_star_02_233
3539
+ transitions:
3540
+ IGHV1-2_star_02_234: 1.0
3541
+ - !!python/object:python.hmmwriter.State
3542
+ emissions:
3543
+ probs:
3544
+ A: 0.04
3545
+ C: 0.08
3546
+ G: 0.84
3547
+ T: 0.04
3548
+ track: nukes
3549
+ extras:
3550
+ ambiguous_char: N
3551
+ ambiguous_emission_prob: 0.25
3552
+ germline: G
3553
+ name: IGHV1-2_star_02_234
3554
+ transitions:
3555
+ IGHV1-2_star_02_235: 1.0
3556
+ - !!python/object:python.hmmwriter.State
3557
+ emissions:
3558
+ probs:
3559
+ A: 0.04
3560
+ C: 0.84
3561
+ G: 0.04
3562
+ T: 0.08
3563
+ track: nukes
3564
+ extras:
3565
+ ambiguous_char: N
3566
+ ambiguous_emission_prob: 0.25
3567
+ germline: C
3568
+ name: IGHV1-2_star_02_235
3569
+ transitions:
3570
+ IGHV1-2_star_02_236: 1.0
3571
+ - !!python/object:python.hmmwriter.State
3572
+ emissions:
3573
+ probs:
3574
+ A: 0.1
3575
+ C: 0.8
3576
+ G: 0.05
3577
+ T: 0.05
3578
+ track: nukes
3579
+ extras:
3580
+ ambiguous_char: N
3581
+ ambiguous_emission_prob: 0.25
3582
+ germline: C
3583
+ name: IGHV1-2_star_02_236
3584
+ transitions:
3585
+ IGHV1-2_star_02_237: 1.0
3586
+ - !!python/object:python.hmmwriter.State
3587
+ emissions:
3588
+ probs:
3589
+ A: 0.0356608468248
3590
+ C: 0.0356608468248
3591
+ G: 0.0356608468248
3592
+ T: 0.8930174595256
3593
+ track: nukes
3594
+ extras:
3595
+ ambiguous_char: N
3596
+ ambiguous_emission_prob: 0.25
3597
+ germline: T
3598
+ name: IGHV1-2_star_02_237
3599
+ transitions:
3600
+ IGHV1-2_star_02_238: 1.0
3601
+ - !!python/object:python.hmmwriter.State
3602
+ emissions:
3603
+ probs:
3604
+ A: 0.8930174595256
3605
+ C: 0.0356608468248
3606
+ G: 0.0356608468248
3607
+ T: 0.0356608468248
3608
+ track: nukes
3609
+ extras:
3610
+ ambiguous_char: N
3611
+ ambiguous_emission_prob: 0.25
3612
+ germline: A
3613
+ name: IGHV1-2_star_02_238
3614
+ transitions:
3615
+ IGHV1-2_star_02_239: 1.0
3616
+ - !!python/object:python.hmmwriter.State
3617
+ emissions:
3618
+ probs:
3619
+ A: 0.04000000000000001
3620
+ C: 0.8
3621
+ G: 0.04000000000000001
3622
+ T: 0.12
3623
+ track: nukes
3624
+ extras:
3625
+ ambiguous_char: N
3626
+ ambiguous_emission_prob: 0.25
3627
+ germline: C
3628
+ name: IGHV1-2_star_02_239
3629
+ transitions:
3630
+ IGHV1-2_star_02_240: 1.0
3631
+ - !!python/object:python.hmmwriter.State
3632
+ emissions:
3633
+ probs:
3634
+ A: 0.8
3635
+ C: 0.04000000000000001
3636
+ G: 0.12
3637
+ T: 0.04000000000000001
3638
+ track: nukes
3639
+ extras:
3640
+ ambiguous_char: N
3641
+ ambiguous_emission_prob: 0.25
3642
+ germline: A
3643
+ name: IGHV1-2_star_02_240
3644
+ transitions:
3645
+ IGHV1-2_star_02_241: 1.0
3646
+ - !!python/object:python.hmmwriter.State
3647
+ emissions:
3648
+ probs:
3649
+ A: 0.0356608468248
3650
+ C: 0.0356608468248
3651
+ G: 0.0356608468248
3652
+ T: 0.8930174595256
3653
+ track: nukes
3654
+ extras:
3655
+ ambiguous_char: N
3656
+ ambiguous_emission_prob: 0.25
3657
+ germline: T
3658
+ name: IGHV1-2_star_02_241
3659
+ transitions:
3660
+ IGHV1-2_star_02_242: 1.0
3661
+ - !!python/object:python.hmmwriter.State
3662
+ emissions:
3663
+ probs:
3664
+ A: 0.04
3665
+ C: 0.08
3666
+ G: 0.84
3667
+ T: 0.04
3668
+ track: nukes
3669
+ extras:
3670
+ ambiguous_char: N
3671
+ ambiguous_emission_prob: 0.25
3672
+ germline: G
3673
+ name: IGHV1-2_star_02_242
3674
+ transitions:
3675
+ IGHV1-2_star_02_243: 1.0
3676
+ - !!python/object:python.hmmwriter.State
3677
+ emissions:
3678
+ probs:
3679
+ A: 0.0356608468248
3680
+ C: 0.0356608468248
3681
+ G: 0.8930174595256
3682
+ T: 0.0356608468248
3683
+ track: nukes
3684
+ extras:
3685
+ ambiguous_char: N
3686
+ ambiguous_emission_prob: 0.25
3687
+ germline: G
3688
+ name: IGHV1-2_star_02_243
3689
+ transitions:
3690
+ IGHV1-2_star_02_244: 1.0
3691
+ - !!python/object:python.hmmwriter.State
3692
+ emissions:
3693
+ probs:
3694
+ A: 0.84
3695
+ C: 0.05333333333333333
3696
+ G: 0.05333333333333333
3697
+ T: 0.05333333333333333
3698
+ track: nukes
3699
+ extras:
3700
+ ambiguous_char: N
3701
+ ambiguous_emission_prob: 0.25
3702
+ germline: A
3703
+ name: IGHV1-2_star_02_244
3704
+ transitions:
3705
+ IGHV1-2_star_02_245: 1.0
3706
+ - !!python/object:python.hmmwriter.State
3707
+ emissions:
3708
+ probs:
3709
+ A: 0.05
3710
+ C: 0.05
3711
+ G: 0.8
3712
+ T: 0.1
3713
+ track: nukes
3714
+ extras:
3715
+ ambiguous_char: N
3716
+ ambiguous_emission_prob: 0.25
3717
+ germline: G
3718
+ name: IGHV1-2_star_02_245
3719
+ transitions:
3720
+ IGHV1-2_star_02_246: 1.0
3721
+ - !!python/object:python.hmmwriter.State
3722
+ emissions:
3723
+ probs:
3724
+ A: 0.04
3725
+ C: 0.84
3726
+ G: 0.08
3727
+ T: 0.04
3728
+ track: nukes
3729
+ extras:
3730
+ ambiguous_char: N
3731
+ ambiguous_emission_prob: 0.25
3732
+ germline: C
3733
+ name: IGHV1-2_star_02_246
3734
+ transitions:
3735
+ IGHV1-2_star_02_247: 1.0
3736
+ - !!python/object:python.hmmwriter.State
3737
+ emissions:
3738
+ probs:
3739
+ A: 0.0356608468248
3740
+ C: 0.0356608468248
3741
+ G: 0.0356608468248
3742
+ T: 0.8930174595256
3743
+ track: nukes
3744
+ extras:
3745
+ ambiguous_char: N
3746
+ ambiguous_emission_prob: 0.25
3747
+ germline: T
3748
+ name: IGHV1-2_star_02_247
3749
+ transitions:
3750
+ IGHV1-2_star_02_248: 1.0
3751
+ - !!python/object:python.hmmwriter.State
3752
+ emissions:
3753
+ probs:
3754
+ A: 0.04
3755
+ C: 0.04
3756
+ G: 0.84
3757
+ T: 0.08
3758
+ track: nukes
3759
+ extras:
3760
+ ambiguous_char: N
3761
+ ambiguous_emission_prob: 0.25
3762
+ germline: G
3763
+ name: IGHV1-2_star_02_248
3764
+ transitions:
3765
+ IGHV1-2_star_02_249: 1.0
3766
+ - !!python/object:python.hmmwriter.State
3767
+ emissions:
3768
+ probs:
3769
+ A: 0.84
3770
+ C: 0.04
3771
+ G: 0.08
3772
+ T: 0.04
3773
+ track: nukes
3774
+ extras:
3775
+ ambiguous_char: N
3776
+ ambiguous_emission_prob: 0.25
3777
+ germline: A
3778
+ name: IGHV1-2_star_02_249
3779
+ transitions:
3780
+ IGHV1-2_star_02_250: 1.0
3781
+ - !!python/object:python.hmmwriter.State
3782
+ emissions:
3783
+ probs:
3784
+ A: 0.03666666666666667
3785
+ C: 0.03666666666666667
3786
+ G: 0.89
3787
+ T: 0.03666666666666667
3788
+ track: nukes
3789
+ extras:
3790
+ ambiguous_char: N
3791
+ ambiguous_emission_prob: 0.25
3792
+ germline: G
3793
+ name: IGHV1-2_star_02_250
3794
+ transitions:
3795
+ IGHV1-2_star_02_251: 1.0
3796
+ - !!python/object:python.hmmwriter.State
3797
+ emissions:
3798
+ probs:
3799
+ A: 0.04000000000000001
3800
+ C: 0.8
3801
+ G: 0.04000000000000001
3802
+ T: 0.12
3803
+ track: nukes
3804
+ extras:
3805
+ ambiguous_char: N
3806
+ ambiguous_emission_prob: 0.25
3807
+ germline: C
3808
+ name: IGHV1-2_star_02_251
3809
+ transitions:
3810
+ IGHV1-2_star_02_252: 1.0
3811
+ - !!python/object:python.hmmwriter.State
3812
+ emissions:
3813
+ probs:
3814
+ A: 0.8930174595256
3815
+ C: 0.0356608468248
3816
+ G: 0.0356608468248
3817
+ T: 0.0356608468248
3818
+ track: nukes
3819
+ extras:
3820
+ ambiguous_char: N
3821
+ ambiguous_emission_prob: 0.25
3822
+ germline: A
3823
+ name: IGHV1-2_star_02_252
3824
+ transitions:
3825
+ IGHV1-2_star_02_253: 1.0
3826
+ - !!python/object:python.hmmwriter.State
3827
+ emissions:
3828
+ probs:
3829
+ A: 0.03666666666666667
3830
+ C: 0.03666666666666667
3831
+ G: 0.89
3832
+ T: 0.03666666666666667
3833
+ track: nukes
3834
+ extras:
3835
+ ambiguous_char: N
3836
+ ambiguous_emission_prob: 0.25
3837
+ germline: G
3838
+ name: IGHV1-2_star_02_253
3839
+ transitions:
3840
+ IGHV1-2_star_02_254: 1.0
3841
+ - !!python/object:python.hmmwriter.State
3842
+ emissions:
3843
+ probs:
3844
+ A: 0.02857142857142857
3845
+ C: 0.08571428571428572
3846
+ G: 0.8
3847
+ T: 0.08571428571428572
3848
+ track: nukes
3849
+ extras:
3850
+ ambiguous_char: N
3851
+ ambiguous_emission_prob: 0.25
3852
+ germline: G
3853
+ name: IGHV1-2_star_02_254
3854
+ transitions:
3855
+ IGHV1-2_star_02_255: 1.0
3856
+ - !!python/object:python.hmmwriter.State
3857
+ emissions:
3858
+ probs:
3859
+ A: 0.03666666666666667
3860
+ C: 0.89
3861
+ G: 0.03666666666666667
3862
+ T: 0.03666666666666667
3863
+ track: nukes
3864
+ extras:
3865
+ ambiguous_char: N
3866
+ ambiguous_emission_prob: 0.25
3867
+ germline: C
3868
+ name: IGHV1-2_star_02_255
3869
+ transitions:
3870
+ IGHV1-2_star_02_256: 1.0
3871
+ - !!python/object:python.hmmwriter.State
3872
+ emissions:
3873
+ probs:
3874
+ A: 0.0356608468248
3875
+ C: 0.0356608468248
3876
+ G: 0.0356608468248
3877
+ T: 0.8930174595256
3878
+ track: nukes
3879
+ extras:
3880
+ ambiguous_char: N
3881
+ ambiguous_emission_prob: 0.25
3882
+ germline: T
3883
+ name: IGHV1-2_star_02_256
3884
+ transitions:
3885
+ IGHV1-2_star_02_257: 1.0
3886
+ - !!python/object:python.hmmwriter.State
3887
+ emissions:
3888
+ probs:
3889
+ A: 0.0356608468248
3890
+ C: 0.0356608468248
3891
+ G: 0.8930174595256
3892
+ T: 0.0356608468248
3893
+ track: nukes
3894
+ extras:
3895
+ ambiguous_char: N
3896
+ ambiguous_emission_prob: 0.25
3897
+ germline: G
3898
+ name: IGHV1-2_star_02_257
3899
+ transitions:
3900
+ IGHV1-2_star_02_258: 1.0
3901
+ - !!python/object:python.hmmwriter.State
3902
+ emissions:
3903
+ probs:
3904
+ A: 0.8930174595256
3905
+ C: 0.0356608468248
3906
+ G: 0.0356608468248
3907
+ T: 0.0356608468248
3908
+ track: nukes
3909
+ extras:
3910
+ ambiguous_char: N
3911
+ ambiguous_emission_prob: 0.25
3912
+ germline: A
3913
+ name: IGHV1-2_star_02_258
3914
+ transitions:
3915
+ IGHV1-2_star_02_259: 1.0
3916
+ - !!python/object:python.hmmwriter.State
3917
+ emissions:
3918
+ probs:
3919
+ A: 0.04000000000000001
3920
+ C: 0.04000000000000001
3921
+ G: 0.8
3922
+ T: 0.12
3923
+ track: nukes
3924
+ extras:
3925
+ ambiguous_char: N
3926
+ ambiguous_emission_prob: 0.25
3927
+ germline: G
3928
+ name: IGHV1-2_star_02_259
3929
+ transitions:
3930
+ IGHV1-2_star_02_260: 1.0
3931
+ - !!python/object:python.hmmwriter.State
3932
+ emissions:
3933
+ probs:
3934
+ A: 0.89
3935
+ C: 0.03666666666666667
3936
+ G: 0.03666666666666667
3937
+ T: 0.03666666666666667
3938
+ track: nukes
3939
+ extras:
3940
+ ambiguous_char: N
3941
+ ambiguous_emission_prob: 0.25
3942
+ germline: A
3943
+ name: IGHV1-2_star_02_260
3944
+ transitions:
3945
+ IGHV1-2_star_02_261: 1.0
3946
+ - !!python/object:python.hmmwriter.State
3947
+ emissions:
3948
+ probs:
3949
+ A: 0.0356608468248
3950
+ C: 0.0356608468248
3951
+ G: 0.0356608468248
3952
+ T: 0.8930174595256
3953
+ track: nukes
3954
+ extras:
3955
+ ambiguous_char: N
3956
+ ambiguous_emission_prob: 0.25
3957
+ germline: T
3958
+ name: IGHV1-2_star_02_261
3959
+ transitions:
3960
+ IGHV1-2_star_02_262: 1.0
3961
+ - !!python/object:python.hmmwriter.State
3962
+ emissions:
3963
+ probs:
3964
+ A: 0.0356608468248
3965
+ C: 0.8930174595256
3966
+ G: 0.0356608468248
3967
+ T: 0.0356608468248
3968
+ track: nukes
3969
+ extras:
3970
+ ambiguous_char: N
3971
+ ambiguous_emission_prob: 0.25
3972
+ germline: C
3973
+ name: IGHV1-2_star_02_262
3974
+ transitions:
3975
+ IGHV1-2_star_02_263: 1.0
3976
+ - !!python/object:python.hmmwriter.State
3977
+ emissions:
3978
+ probs:
3979
+ A: 0.0356608468248
3980
+ C: 0.0356608468248
3981
+ G: 0.0356608468248
3982
+ T: 0.8930174595256
3983
+ track: nukes
3984
+ extras:
3985
+ ambiguous_char: N
3986
+ ambiguous_emission_prob: 0.25
3987
+ germline: T
3988
+ name: IGHV1-2_star_02_263
3989
+ transitions:
3990
+ IGHV1-2_star_02_264: 1.0
3991
+ - !!python/object:python.hmmwriter.State
3992
+ emissions:
3993
+ probs:
3994
+ A: 0.0356608468248
3995
+ C: 0.0356608468248
3996
+ G: 0.8930174595256
3997
+ T: 0.0356608468248
3998
+ track: nukes
3999
+ extras:
4000
+ ambiguous_char: N
4001
+ ambiguous_emission_prob: 0.25
4002
+ germline: G
4003
+ name: IGHV1-2_star_02_264
4004
+ transitions:
4005
+ IGHV1-2_star_02_265: 1.0
4006
+ - !!python/object:python.hmmwriter.State
4007
+ emissions:
4008
+ probs:
4009
+ A: 0.84
4010
+ C: 0.04
4011
+ G: 0.04
4012
+ T: 0.08
4013
+ track: nukes
4014
+ extras:
4015
+ ambiguous_char: N
4016
+ ambiguous_emission_prob: 0.25
4017
+ germline: A
4018
+ name: IGHV1-2_star_02_265
4019
+ transitions:
4020
+ IGHV1-2_star_02_266: 1.0
4021
+ - !!python/object:python.hmmwriter.State
4022
+ emissions:
4023
+ probs:
4024
+ A: 0.04
4025
+ C: 0.84
4026
+ G: 0.08
4027
+ T: 0.04
4028
+ track: nukes
4029
+ extras:
4030
+ ambiguous_char: N
4031
+ ambiguous_emission_prob: 0.25
4032
+ germline: C
4033
+ name: IGHV1-2_star_02_266
4034
+ transitions:
4035
+ IGHV1-2_star_02_267: 1.0
4036
+ - !!python/object:python.hmmwriter.State
4037
+ emissions:
4038
+ probs:
4039
+ A: 0.0356608468248
4040
+ C: 0.0356608468248
4041
+ G: 0.8930174595256
4042
+ T: 0.0356608468248
4043
+ track: nukes
4044
+ extras:
4045
+ ambiguous_char: N
4046
+ ambiguous_emission_prob: 0.25
4047
+ germline: G
4048
+ name: IGHV1-2_star_02_267
4049
+ transitions:
4050
+ IGHV1-2_star_02_268: 1.0
4051
+ - !!python/object:python.hmmwriter.State
4052
+ emissions:
4053
+ probs:
4054
+ A: 0.8930174595256
4055
+ C: 0.0356608468248
4056
+ G: 0.0356608468248
4057
+ T: 0.0356608468248
4058
+ track: nukes
4059
+ extras:
4060
+ ambiguous_char: N
4061
+ ambiguous_emission_prob: 0.25
4062
+ germline: A
4063
+ name: IGHV1-2_star_02_268
4064
+ transitions:
4065
+ IGHV1-2_star_02_269: 1.0
4066
+ - !!python/object:python.hmmwriter.State
4067
+ emissions:
4068
+ probs:
4069
+ A: 0.0356608468248
4070
+ C: 0.8930174595256
4071
+ G: 0.0356608468248
4072
+ T: 0.0356608468248
4073
+ track: nukes
4074
+ extras:
4075
+ ambiguous_char: N
4076
+ ambiguous_emission_prob: 0.25
4077
+ germline: C
4078
+ name: IGHV1-2_star_02_269
4079
+ transitions:
4080
+ IGHV1-2_star_02_270: 1.0
4081
+ - !!python/object:python.hmmwriter.State
4082
+ emissions:
4083
+ probs:
4084
+ A: 0.8930174595256
4085
+ C: 0.0356608468248
4086
+ G: 0.0356608468248
4087
+ T: 0.0356608468248
4088
+ track: nukes
4089
+ extras:
4090
+ ambiguous_char: N
4091
+ ambiguous_emission_prob: 0.25
4092
+ germline: A
4093
+ name: IGHV1-2_star_02_270
4094
+ transitions:
4095
+ IGHV1-2_star_02_271: 1.0
4096
+ - !!python/object:python.hmmwriter.State
4097
+ emissions:
4098
+ probs:
4099
+ A: 0.0356608468248
4100
+ C: 0.8930174595256
4101
+ G: 0.0356608468248
4102
+ T: 0.0356608468248
4103
+ track: nukes
4104
+ extras:
4105
+ ambiguous_char: N
4106
+ ambiguous_emission_prob: 0.25
4107
+ germline: C
4108
+ name: IGHV1-2_star_02_271
4109
+ transitions:
4110
+ IGHV1-2_star_02_272: 1.0
4111
+ - !!python/object:python.hmmwriter.State
4112
+ emissions:
4113
+ probs:
4114
+ A: 0.0356608468248
4115
+ C: 0.0356608468248
4116
+ G: 0.8930174595256
4117
+ T: 0.0356608468248
4118
+ track: nukes
4119
+ extras:
4120
+ ambiguous_char: N
4121
+ ambiguous_emission_prob: 0.25
4122
+ germline: G
4123
+ name: IGHV1-2_star_02_272
4124
+ transitions:
4125
+ IGHV1-2_star_02_273: 1.0
4126
+ - !!python/object:python.hmmwriter.State
4127
+ emissions:
4128
+ probs:
4129
+ A: 0.0356608468248
4130
+ C: 0.0356608468248
4131
+ G: 0.8930174595256
4132
+ T: 0.0356608468248
4133
+ track: nukes
4134
+ extras:
4135
+ ambiguous_char: N
4136
+ ambiguous_emission_prob: 0.25
4137
+ germline: G
4138
+ name: IGHV1-2_star_02_273
4139
+ transitions:
4140
+ IGHV1-2_star_02_274: 1.0
4141
+ - !!python/object:python.hmmwriter.State
4142
+ emissions:
4143
+ probs:
4144
+ A: 0.0356608468248
4145
+ C: 0.8930174595256
4146
+ G: 0.0356608468248
4147
+ T: 0.0356608468248
4148
+ track: nukes
4149
+ extras:
4150
+ ambiguous_char: N
4151
+ ambiguous_emission_prob: 0.25
4152
+ germline: C
4153
+ name: IGHV1-2_star_02_274
4154
+ transitions:
4155
+ IGHV1-2_star_02_275: 1.0
4156
+ - !!python/object:python.hmmwriter.State
4157
+ emissions:
4158
+ probs:
4159
+ A: 0.0356608468248
4160
+ C: 0.8930174595256
4161
+ G: 0.0356608468248
4162
+ T: 0.0356608468248
4163
+ track: nukes
4164
+ extras:
4165
+ ambiguous_char: N
4166
+ ambiguous_emission_prob: 0.25
4167
+ germline: C
4168
+ name: IGHV1-2_star_02_275
4169
+ transitions:
4170
+ IGHV1-2_star_02_276: 1.0
4171
+ - !!python/object:python.hmmwriter.State
4172
+ emissions:
4173
+ probs:
4174
+ A: 0.12
4175
+ C: 0.04000000000000001
4176
+ G: 0.8
4177
+ T: 0.04000000000000001
4178
+ track: nukes
4179
+ extras:
4180
+ ambiguous_char: N
4181
+ ambiguous_emission_prob: 0.25
4182
+ germline: G
4183
+ name: IGHV1-2_star_02_276
4184
+ transitions:
4185
+ IGHV1-2_star_02_277: 1.0
4186
+ - !!python/object:python.hmmwriter.State
4187
+ emissions:
4188
+ probs:
4189
+ A: 0.04000000000000001
4190
+ C: 0.12
4191
+ G: 0.04000000000000001
4192
+ T: 0.8
4193
+ track: nukes
4194
+ extras:
4195
+ ambiguous_char: N
4196
+ ambiguous_emission_prob: 0.25
4197
+ germline: T
4198
+ name: IGHV1-2_star_02_277
4199
+ transitions:
4200
+ IGHV1-2_star_02_278: 1.0
4201
+ - !!python/object:python.hmmwriter.State
4202
+ emissions:
4203
+ probs:
4204
+ A: 0.05
4205
+ C: 0.05
4206
+ G: 0.8
4207
+ T: 0.1
4208
+ track: nukes
4209
+ extras:
4210
+ ambiguous_char: N
4211
+ ambiguous_emission_prob: 0.25
4212
+ germline: G
4213
+ name: IGHV1-2_star_02_278
4214
+ transitions:
4215
+ IGHV1-2_star_02_279: 1.0
4216
+ - !!python/object:python.hmmwriter.State
4217
+ emissions:
4218
+ probs:
4219
+ A: 0.0356608468248
4220
+ C: 0.0356608468248
4221
+ G: 0.0356608468248
4222
+ T: 0.8930174595256
4223
+ track: nukes
4224
+ extras:
4225
+ ambiguous_char: N
4226
+ ambiguous_emission_prob: 0.25
4227
+ germline: T
4228
+ name: IGHV1-2_star_02_279
4229
+ transitions:
4230
+ IGHV1-2_star_02_280: 1.0
4231
+ - !!python/object:python.hmmwriter.State
4232
+ emissions:
4233
+ probs:
4234
+ A: 0.8930174595256
4235
+ C: 0.0356608468248
4236
+ G: 0.0356608468248
4237
+ T: 0.0356608468248
4238
+ track: nukes
4239
+ extras:
4240
+ ambiguous_char: N
4241
+ ambiguous_emission_prob: 0.25
4242
+ germline: A
4243
+ name: IGHV1-2_star_02_280
4244
+ transitions:
4245
+ IGHV1-2_star_02_281: 1.0
4246
+ - !!python/object:python.hmmwriter.State
4247
+ emissions:
4248
+ probs:
4249
+ A: 0.03666666666666667
4250
+ C: 0.03666666666666667
4251
+ G: 0.03666666666666667
4252
+ T: 0.89
4253
+ track: nukes
4254
+ extras:
4255
+ ambiguous_char: N
4256
+ ambiguous_emission_prob: 0.25
4257
+ germline: T
4258
+ name: IGHV1-2_star_02_281
4259
+ transitions:
4260
+ IGHV1-2_star_02_282: 1.0
4261
+ - !!python/object:python.hmmwriter.State
4262
+ emissions:
4263
+ probs:
4264
+ A: 0.0356608468248
4265
+ C: 0.0356608468248
4266
+ G: 0.0356608468248
4267
+ T: 0.8930174595256
4268
+ track: nukes
4269
+ extras:
4270
+ ambiguous_char: N
4271
+ ambiguous_emission_prob: 0.25
4272
+ germline: T
4273
+ name: IGHV1-2_star_02_282
4274
+ transitions:
4275
+ IGHV1-2_star_02_283: 1.0
4276
+ - !!python/object:python.hmmwriter.State
4277
+ emissions:
4278
+ probs:
4279
+ A: 0.8930174595256
4280
+ C: 0.0356608468248
4281
+ G: 0.0356608468248
4282
+ T: 0.0356608468248
4283
+ track: nukes
4284
+ extras:
4285
+ ambiguous_char: N
4286
+ ambiguous_emission_prob: 0.25
4287
+ germline: A
4288
+ name: IGHV1-2_star_02_283
4289
+ transitions:
4290
+ IGHV1-2_star_02_284: 1.0
4291
+ - !!python/object:python.hmmwriter.State
4292
+ emissions:
4293
+ probs:
4294
+ A: 0.04
4295
+ C: 0.84
4296
+ G: 0.04
4297
+ T: 0.08
4298
+ track: nukes
4299
+ extras:
4300
+ ambiguous_char: N
4301
+ ambiguous_emission_prob: 0.25
4302
+ germline: C
4303
+ name: IGHV1-2_star_02_284
4304
+ transitions:
4305
+ IGHV1-2_star_02_285: 1.0
4306
+ - !!python/object:python.hmmwriter.State
4307
+ emissions:
4308
+ probs:
4309
+ A: 0.0356608468248
4310
+ C: 0.0356608468248
4311
+ G: 0.0356608468248
4312
+ T: 0.8930174595256
4313
+ track: nukes
4314
+ extras:
4315
+ ambiguous_char: N
4316
+ ambiguous_emission_prob: 0.25
4317
+ germline: T
4318
+ name: IGHV1-2_star_02_285
4319
+ transitions:
4320
+ IGHV1-2_star_02_286: 1.0
4321
+ - !!python/object:python.hmmwriter.State
4322
+ emissions:
4323
+ probs:
4324
+ A: 0.0356608468248
4325
+ C: 0.0356608468248
4326
+ G: 0.8930174595256
4327
+ T: 0.0356608468248
4328
+ track: nukes
4329
+ extras:
4330
+ ambiguous_char: N
4331
+ ambiguous_emission_prob: 0.25
4332
+ germline: G
4333
+ name: IGHV1-2_star_02_286
4334
+ transitions:
4335
+ IGHV1-2_star_02_287: 1.0
4336
+ - !!python/object:python.hmmwriter.State
4337
+ emissions:
4338
+ probs:
4339
+ A: 0.03689205799764012
4340
+ C: 0.03689205799764012
4341
+ G: 0.03689205799764012
4342
+ T: 0.8893238260070796
4343
+ track: nukes
4344
+ extras:
4345
+ ambiguous_char: N
4346
+ ambiguous_emission_prob: 0.25
4347
+ germline: T
4348
+ name: IGHV1-2_star_02_287
4349
+ transitions:
4350
+ IGHV1-2_star_02_288: 0.967479674796748
4351
+ end: 0.032520325203252036
4352
+ - !!python/object:python.hmmwriter.State
4353
+ emissions:
4354
+ probs:
4355
+ A: 0.03812326917048024
4356
+ C: 0.03812326917048024
4357
+ G: 0.8856301924885592
4358
+ T: 0.03812326917048024
4359
+ track: nukes
4360
+ extras:
4361
+ ambiguous_char: N
4362
+ ambiguous_emission_prob: 0.25
4363
+ germline: G
4364
+ name: IGHV1-2_star_02_288
4365
+ transitions:
4366
+ IGHV1-2_star_02_289: 0.9512195121951219
4367
+ end: 0.04878048780487805
4368
+ - !!python/object:python.hmmwriter.State
4369
+ emissions:
4370
+ probs:
4371
+ A: 0.030012513452282414
4372
+ C: 0.8199249192863055
4373
+ G: 0.030012513452282414
4374
+ T: 0.12005005380912966
4375
+ track: nukes
4376
+ extras:
4377
+ ambiguous_char: N
4378
+ ambiguous_emission_prob: 0.25
4379
+ germline: C
4380
+ name: IGHV1-2_star_02_289
4381
+ transitions:
4382
+ IGHV1-2_star_02_290: 0.9349593495934959
4383
+ end: 0.06504065040650406
4384
+ - !!python/object:python.hmmwriter.State
4385
+ emissions:
4386
+ probs:
4387
+ A: 0.04114448031719754
4388
+ C: 0.04114448031719754
4389
+ G: 0.8765665590484074
4390
+ T: 0.04114448031719754
4391
+ track: nukes
4392
+ extras:
4393
+ ambiguous_char: N
4394
+ ambiguous_emission_prob: 0.25
4395
+ germline: G
4396
+ name: IGHV1-2_star_02_290
4397
+ transitions:
4398
+ IGHV1-2_star_02_291: 0.9186991869918699
4399
+ end: 0.08130081300813008
4400
+ - !!python/object:python.hmmwriter.State
4401
+ emissions:
4402
+ probs:
4403
+ A: 0.8487637543660648
4404
+ C: 0.0378090614084838
4405
+ G: 0.0756181228169676
4406
+ T: 0.0378090614084838
4407
+ track: nukes
4408
+ extras:
4409
+ ambiguous_char: N
4410
+ ambiguous_emission_prob: 0.25
4411
+ germline: A
4412
+ name: IGHV1-2_star_02_291
4413
+ transitions:
4414
+ IGHV1-2_star_02_292: 0.8780487804878049
4415
+ end: 0.12195121951219512
4416
+ - !!python/object:python.hmmwriter.State
4417
+ emissions:
4418
+ probs:
4419
+ A: 0.04341083655711575
4420
+ C: 0.04341083655711575
4421
+ G: 0.8697674903286527
4422
+ T: 0.04341083655711575
4423
+ track: nukes
4424
+ extras:
4425
+ ambiguous_char: N
4426
+ ambiguous_emission_prob: 0.25
4427
+ germline: G
4428
+ name: IGHV1-2_star_02_292
4429
+ transitions:
4430
+ IGHV1-2_star_02_293: 0.8373983739837398
4431
+ end: 0.16260162601626016
4432
+ - !!python/object:python.hmmwriter.State
4433
+ emissions:
4434
+ probs:
4435
+ A: 0.8631581450013797
4436
+ C: 0.0456139516662068
4437
+ G: 0.0456139516662068
4438
+ T: 0.0456139516662068
4439
+ track: nukes
4440
+ extras:
4441
+ ambiguous_char: N
4442
+ ambiguous_emission_prob: 0.25
4443
+ germline: A
4444
+ name: IGHV1-2_star_02_293
4445
+ transitions:
4446
+ IGHV1-2_star_02_294: 0.9186991869918699
4447
+ end: 0.08130081300813008
4448
+ - !!python/object:python.hmmwriter.State
4449
+ emissions:
4450
+ probs:
4451
+ A: 0.04586764690307655
4452
+ C: 0.04586764690307655
4453
+ G: 0.8623970592907704
4454
+ T: 0.04586764690307655
4455
+ track: nukes
4456
+ extras:
4457
+ ambiguous_char: N
4458
+ ambiguous_emission_prob: 0.25
4459
+ germline: G
4460
+ name: IGHV1-2_star_02_294
4461
+ transitions:
4462
+ IGHV1-2_star_02_295: 0.6747967479674797
4463
+ end: 0.3252032520325203
4464
+ - !!python/object:python.hmmwriter.State
4465
+ emissions:
4466
+ probs:
4467
+ A: 0.8597747578589167
4468
+ C: 0.04674174738036112
4469
+ G: 0.04674174738036112
4470
+ T: 0.04674174738036112
4471
+ track: nukes
4472
+ extras:
4473
+ ambiguous_char: N
4474
+ ambiguous_emission_prob: 0.25
4475
+ germline: A
4476
+ name: IGHV1-2_star_02_295
4477
+ transitions:
4478
+ end: 1.0
4479
+ tracks:
4480
+ nukes:
4481
+ - A
4482
+ - C
4483
+ - G
4484
+ - T