partis-bcr 1.0.11.post1.dev1__cp312-cp312-macosx_10_13_universal2.whl → 1.0.11.post1.dev7__cp312-cp312-macosx_10_13_universal2.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- bin/partis +1 -1
- bin/partis-test.py +6 -0
- bin/partis.py +1 -1
- {partis_bcr-1.0.11.post1.dev1.data → partis_bcr-1.0.11.post1.dev7.data}/scripts/partis-test.py +6 -0
- {partis_bcr-1.0.11.post1.dev1.dist-info → partis_bcr-1.0.11.post1.dev7.dist-info}/METADATA +1 -1
- {partis_bcr-1.0.11.post1.dev1.dist-info → partis_bcr-1.0.11.post1.dev7.dist-info}/RECORD +645 -127
- python/recombinator.py +2 -0
- python/treegenerator.py +1 -1
- test/new-results/annotate-new-simu-annotation-performance/hmm/boundaries/d_3p_del.csv +7 -0
- test/new-results/annotate-new-simu-annotation-performance/hmm/boundaries/d_5p_del.csv +8 -0
- test/new-results/annotate-new-simu-annotation-performance/hmm/boundaries/dj_insertion.csv +8 -0
- test/new-results/annotate-new-simu-annotation-performance/hmm/boundaries/fv_insertion.csv +10 -0
- test/new-results/annotate-new-simu-annotation-performance/hmm/boundaries/j_3p_del.csv +4 -0
- test/new-results/annotate-new-simu-annotation-performance/hmm/boundaries/j_5p_del.csv +8 -0
- test/new-results/annotate-new-simu-annotation-performance/hmm/boundaries/jf_insertion.csv +4 -0
- test/new-results/annotate-new-simu-annotation-performance/hmm/boundaries/shm_indel_length.csv +8 -0
- test/new-results/annotate-new-simu-annotation-performance/hmm/boundaries/v_3p_del.csv +4 -0
- test/new-results/annotate-new-simu-annotation-performance/hmm/boundaries/v_5p_del.csv +4 -0
- test/new-results/annotate-new-simu-annotation-performance/hmm/boundaries/vd_insertion.csv +8 -0
- test/new-results/annotate-new-simu-annotation-performance/hmm/gene-call/d_allele_fraction_correct_vs_per_gene_support.csv +28 -0
- test/new-results/annotate-new-simu-annotation-performance/hmm/gene-call/d_fraction_correct_vs_mute_freq.csv +28 -0
- test/new-results/annotate-new-simu-annotation-performance/hmm/gene-call/d_gene.csv +5 -0
- test/new-results/annotate-new-simu-annotation-performance/hmm/gene-call/j_allele_fraction_correct_vs_per_gene_support.csv +28 -0
- test/new-results/annotate-new-simu-annotation-performance/hmm/gene-call/j_fraction_correct_vs_mute_freq.csv +28 -0
- test/new-results/annotate-new-simu-annotation-performance/hmm/gene-call/j_gene.csv +5 -0
- test/new-results/annotate-new-simu-annotation-performance/hmm/gene-call/v_allele_fraction_correct_vs_per_gene_support.csv +28 -0
- test/new-results/annotate-new-simu-annotation-performance/hmm/gene-call/v_fraction_correct_vs_mute_freq.csv +28 -0
- test/new-results/annotate-new-simu-annotation-performance/hmm/gene-call/v_gene.csv +5 -0
- test/new-results/annotate-new-simu-annotation-performance/hmm/mutation/cdr3_hamming_to_true_naive.csv +7 -0
- test/new-results/annotate-new-simu-annotation-performance/hmm/mutation/cdr3_muted_bases.csv +7 -0
- test/new-results/annotate-new-simu-annotation-performance/hmm/mutation/d_hamming_to_true_naive.csv +5 -0
- test/new-results/annotate-new-simu-annotation-performance/hmm/mutation/d_muted_bases.csv +6 -0
- test/new-results/annotate-new-simu-annotation-performance/hmm/mutation/hamming_to_true_naive.csv +7 -0
- test/new-results/annotate-new-simu-annotation-performance/hmm/mutation/j_hamming_to_true_naive.csv +4 -0
- test/new-results/annotate-new-simu-annotation-performance/hmm/mutation/j_muted_bases.csv +5 -0
- test/new-results/annotate-new-simu-annotation-performance/hmm/mutation/mute_freqs.csv +28 -0
- test/new-results/annotate-new-simu-annotation-performance/hmm/mutation/muted_bases.csv +7 -0
- test/new-results/annotate-new-simu-annotation-performance/hmm/mutation/v_hamming_to_true_naive.csv +4 -0
- test/new-results/annotate-new-simu-annotation-performance/hmm/mutation/v_muted_bases.csv +4 -0
- test/new-results/annotate-new-simu-annotation-performance/sw/boundaries/d_3p_del.csv +8 -0
- test/new-results/annotate-new-simu-annotation-performance/sw/boundaries/d_5p_del.csv +6 -0
- test/new-results/annotate-new-simu-annotation-performance/sw/boundaries/dj_insertion.csv +7 -0
- test/new-results/annotate-new-simu-annotation-performance/sw/boundaries/fv_insertion.csv +4 -0
- test/new-results/annotate-new-simu-annotation-performance/sw/boundaries/j_3p_del.csv +4 -0
- test/new-results/annotate-new-simu-annotation-performance/sw/boundaries/j_5p_del.csv +9 -0
- test/new-results/annotate-new-simu-annotation-performance/sw/boundaries/jf_insertion.csv +4 -0
- test/new-results/annotate-new-simu-annotation-performance/sw/boundaries/shm_indel_length.csv +8 -0
- test/new-results/annotate-new-simu-annotation-performance/sw/boundaries/v_3p_del.csv +4 -0
- test/new-results/annotate-new-simu-annotation-performance/sw/boundaries/v_5p_del.csv +4 -0
- test/new-results/annotate-new-simu-annotation-performance/sw/boundaries/vd_insertion.csv +6 -0
- test/new-results/annotate-new-simu-annotation-performance/sw/gene-call/d_fraction_correct_vs_mute_freq.csv +28 -0
- test/new-results/annotate-new-simu-annotation-performance/sw/gene-call/d_gene.csv +5 -0
- test/new-results/annotate-new-simu-annotation-performance/sw/gene-call/j_fraction_correct_vs_mute_freq.csv +28 -0
- test/new-results/annotate-new-simu-annotation-performance/sw/gene-call/j_gene.csv +5 -0
- test/new-results/annotate-new-simu-annotation-performance/sw/gene-call/v_fraction_correct_vs_mute_freq.csv +28 -0
- test/new-results/annotate-new-simu-annotation-performance/sw/gene-call/v_gene.csv +5 -0
- test/new-results/annotate-new-simu-annotation-performance/sw/mutation/cdr3_hamming_to_true_naive.csv +6 -0
- test/new-results/annotate-new-simu-annotation-performance/sw/mutation/cdr3_muted_bases.csv +7 -0
- test/new-results/annotate-new-simu-annotation-performance/sw/mutation/d_hamming_to_true_naive.csv +5 -0
- test/new-results/annotate-new-simu-annotation-performance/sw/mutation/d_muted_bases.csv +5 -0
- test/new-results/annotate-new-simu-annotation-performance/sw/mutation/hamming_to_true_naive.csv +6 -0
- test/new-results/annotate-new-simu-annotation-performance/sw/mutation/j_hamming_to_true_naive.csv +4 -0
- test/new-results/annotate-new-simu-annotation-performance/sw/mutation/j_muted_bases.csv +6 -0
- test/new-results/annotate-new-simu-annotation-performance/sw/mutation/mute_freqs.csv +28 -0
- test/new-results/annotate-new-simu-annotation-performance/sw/mutation/muted_bases.csv +7 -0
- test/new-results/annotate-new-simu-annotation-performance/sw/mutation/v_hamming_to_true_naive.csv +4 -0
- test/new-results/annotate-new-simu-annotation-performance/sw/mutation/v_muted_bases.csv +4 -0
- test/new-results/annotate-new-simu.yaml +1 -0
- test/new-results/cache-new-partition.csv +59 -0
- test/new-results/get-selection-metrics-new-simu.yaml +1 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/hmm/boundaries/d_3p_del.csv +7 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/hmm/boundaries/d_5p_del.csv +6 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/hmm/boundaries/dj_insertion.csv +8 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/hmm/boundaries/fv_insertion.csv +10 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/hmm/boundaries/j_3p_del.csv +4 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/hmm/boundaries/j_5p_del.csv +8 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/hmm/boundaries/jf_insertion.csv +4 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/hmm/boundaries/shm_indel_length.csv +8 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/hmm/boundaries/v_3p_del.csv +4 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/hmm/boundaries/v_5p_del.csv +4 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/hmm/boundaries/vd_insertion.csv +6 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/hmm/gene-call/d_allele_fraction_correct_vs_per_gene_support.csv +28 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/hmm/gene-call/d_fraction_correct_vs_mute_freq.csv +28 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/hmm/gene-call/d_gene.csv +5 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/hmm/gene-call/j_allele_fraction_correct_vs_per_gene_support.csv +28 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/hmm/gene-call/j_fraction_correct_vs_mute_freq.csv +28 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/hmm/gene-call/j_gene.csv +5 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/hmm/gene-call/v_allele_fraction_correct_vs_per_gene_support.csv +28 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/hmm/gene-call/v_fraction_correct_vs_mute_freq.csv +28 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/hmm/gene-call/v_gene.csv +5 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/hmm/mutation/cdr3_hamming_to_true_naive.csv +5 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/hmm/mutation/cdr3_muted_bases.csv +5 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/hmm/mutation/d_hamming_to_true_naive.csv +4 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/hmm/mutation/d_muted_bases.csv +4 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/hmm/mutation/hamming_to_true_naive.csv +5 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/hmm/mutation/j_hamming_to_true_naive.csv +4 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/hmm/mutation/j_muted_bases.csv +5 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/hmm/mutation/mute_freqs.csv +28 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/hmm/mutation/muted_bases.csv +5 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/hmm/mutation/v_hamming_to_true_naive.csv +4 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/hmm/mutation/v_muted_bases.csv +4 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/sw/boundaries/d_3p_del.csv +8 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/sw/boundaries/d_5p_del.csv +6 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/sw/boundaries/dj_insertion.csv +7 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/sw/boundaries/fv_insertion.csv +4 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/sw/boundaries/j_3p_del.csv +4 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/sw/boundaries/j_5p_del.csv +9 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/sw/boundaries/jf_insertion.csv +4 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/sw/boundaries/shm_indel_length.csv +8 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/sw/boundaries/v_3p_del.csv +4 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/sw/boundaries/v_5p_del.csv +4 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/sw/boundaries/vd_insertion.csv +6 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/sw/gene-call/d_fraction_correct_vs_mute_freq.csv +28 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/sw/gene-call/d_gene.csv +5 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/sw/gene-call/j_fraction_correct_vs_mute_freq.csv +28 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/sw/gene-call/j_gene.csv +5 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/sw/gene-call/v_fraction_correct_vs_mute_freq.csv +28 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/sw/gene-call/v_gene.csv +5 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/sw/mutation/cdr3_hamming_to_true_naive.csv +6 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/sw/mutation/cdr3_muted_bases.csv +7 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/sw/mutation/d_hamming_to_true_naive.csv +5 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/sw/mutation/d_muted_bases.csv +5 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/sw/mutation/hamming_to_true_naive.csv +6 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/sw/mutation/j_hamming_to_true_naive.csv +4 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/sw/mutation/j_muted_bases.csv +6 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/sw/mutation/mute_freqs.csv +28 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/sw/mutation/muted_bases.csv +7 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/sw/mutation/v_hamming_to_true_naive.csv +4 -0
- test/new-results/multi-annotate-new-simu-annotation-performance/sw/mutation/v_muted_bases.csv +4 -0
- test/new-results/multi-annotate-new-simu.yaml +1 -0
- test/new-results/partition-new-simu/fasttree/iclust-0/fasttree.out +1 -0
- test/new-results/partition-new-simu/fasttree/iclust-0/input-seqs.fa +24 -0
- test/new-results/partition-new-simu/fasttree/iclust-0/log +23 -0
- test/new-results/partition-new-simu/fasttree/iclust-1/fasttree.out +1 -0
- test/new-results/partition-new-simu/fasttree/iclust-1/input-seqs.fa +16 -0
- test/new-results/partition-new-simu/fasttree/iclust-1/log +23 -0
- test/new-results/partition-new-simu/fasttree/iclust-2/fasttree.out +1 -0
- test/new-results/partition-new-simu/fasttree/iclust-2/input-seqs.fa +16 -0
- test/new-results/partition-new-simu/fasttree/iclust-2/log +22 -0
- test/new-results/partition-new-simu-annotation-performance/hmm/boundaries/d_3p_del.csv +7 -0
- test/new-results/partition-new-simu-annotation-performance/hmm/boundaries/d_5p_del.csv +6 -0
- test/new-results/partition-new-simu-annotation-performance/hmm/boundaries/dj_insertion.csv +8 -0
- test/new-results/partition-new-simu-annotation-performance/hmm/boundaries/fv_insertion.csv +10 -0
- test/new-results/partition-new-simu-annotation-performance/hmm/boundaries/j_3p_del.csv +4 -0
- test/new-results/partition-new-simu-annotation-performance/hmm/boundaries/j_5p_del.csv +8 -0
- test/new-results/partition-new-simu-annotation-performance/hmm/boundaries/jf_insertion.csv +4 -0
- test/new-results/partition-new-simu-annotation-performance/hmm/boundaries/shm_indel_length.csv +8 -0
- test/new-results/partition-new-simu-annotation-performance/hmm/boundaries/v_3p_del.csv +4 -0
- test/new-results/partition-new-simu-annotation-performance/hmm/boundaries/v_5p_del.csv +4 -0
- test/new-results/partition-new-simu-annotation-performance/hmm/boundaries/vd_insertion.csv +6 -0
- test/new-results/partition-new-simu-annotation-performance/hmm/gene-call/d_allele_fraction_correct_vs_per_gene_support.csv +28 -0
- test/new-results/partition-new-simu-annotation-performance/hmm/gene-call/d_fraction_correct_vs_mute_freq.csv +28 -0
- test/new-results/partition-new-simu-annotation-performance/hmm/gene-call/d_gene.csv +5 -0
- test/new-results/partition-new-simu-annotation-performance/hmm/gene-call/j_allele_fraction_correct_vs_per_gene_support.csv +28 -0
- test/new-results/partition-new-simu-annotation-performance/hmm/gene-call/j_fraction_correct_vs_mute_freq.csv +28 -0
- test/new-results/partition-new-simu-annotation-performance/hmm/gene-call/j_gene.csv +5 -0
- test/new-results/partition-new-simu-annotation-performance/hmm/gene-call/v_allele_fraction_correct_vs_per_gene_support.csv +28 -0
- test/new-results/partition-new-simu-annotation-performance/hmm/gene-call/v_fraction_correct_vs_mute_freq.csv +28 -0
- test/new-results/partition-new-simu-annotation-performance/hmm/gene-call/v_gene.csv +5 -0
- test/new-results/partition-new-simu-annotation-performance/hmm/mutation/cdr3_hamming_to_true_naive.csv +5 -0
- test/new-results/partition-new-simu-annotation-performance/hmm/mutation/cdr3_muted_bases.csv +5 -0
- test/new-results/partition-new-simu-annotation-performance/hmm/mutation/d_hamming_to_true_naive.csv +4 -0
- test/new-results/partition-new-simu-annotation-performance/hmm/mutation/d_muted_bases.csv +4 -0
- test/new-results/partition-new-simu-annotation-performance/hmm/mutation/hamming_to_true_naive.csv +5 -0
- test/new-results/partition-new-simu-annotation-performance/hmm/mutation/j_hamming_to_true_naive.csv +4 -0
- test/new-results/partition-new-simu-annotation-performance/hmm/mutation/j_muted_bases.csv +5 -0
- test/new-results/partition-new-simu-annotation-performance/hmm/mutation/mute_freqs.csv +28 -0
- test/new-results/partition-new-simu-annotation-performance/hmm/mutation/muted_bases.csv +5 -0
- test/new-results/partition-new-simu-annotation-performance/hmm/mutation/v_hamming_to_true_naive.csv +4 -0
- test/new-results/partition-new-simu-annotation-performance/hmm/mutation/v_muted_bases.csv +4 -0
- test/new-results/partition-new-simu-annotation-performance/sw/boundaries/d_3p_del.csv +8 -0
- test/new-results/partition-new-simu-annotation-performance/sw/boundaries/d_5p_del.csv +6 -0
- test/new-results/partition-new-simu-annotation-performance/sw/boundaries/dj_insertion.csv +7 -0
- test/new-results/partition-new-simu-annotation-performance/sw/boundaries/fv_insertion.csv +4 -0
- test/new-results/partition-new-simu-annotation-performance/sw/boundaries/j_3p_del.csv +4 -0
- test/new-results/partition-new-simu-annotation-performance/sw/boundaries/j_5p_del.csv +9 -0
- test/new-results/partition-new-simu-annotation-performance/sw/boundaries/jf_insertion.csv +4 -0
- test/new-results/partition-new-simu-annotation-performance/sw/boundaries/shm_indel_length.csv +8 -0
- test/new-results/partition-new-simu-annotation-performance/sw/boundaries/v_3p_del.csv +4 -0
- test/new-results/partition-new-simu-annotation-performance/sw/boundaries/v_5p_del.csv +4 -0
- test/new-results/partition-new-simu-annotation-performance/sw/boundaries/vd_insertion.csv +6 -0
- test/new-results/partition-new-simu-annotation-performance/sw/gene-call/d_fraction_correct_vs_mute_freq.csv +28 -0
- test/new-results/partition-new-simu-annotation-performance/sw/gene-call/d_gene.csv +5 -0
- test/new-results/partition-new-simu-annotation-performance/sw/gene-call/j_fraction_correct_vs_mute_freq.csv +28 -0
- test/new-results/partition-new-simu-annotation-performance/sw/gene-call/j_gene.csv +5 -0
- test/new-results/partition-new-simu-annotation-performance/sw/gene-call/v_fraction_correct_vs_mute_freq.csv +28 -0
- test/new-results/partition-new-simu-annotation-performance/sw/gene-call/v_gene.csv +5 -0
- test/new-results/partition-new-simu-annotation-performance/sw/mutation/cdr3_hamming_to_true_naive.csv +6 -0
- test/new-results/partition-new-simu-annotation-performance/sw/mutation/cdr3_muted_bases.csv +7 -0
- test/new-results/partition-new-simu-annotation-performance/sw/mutation/d_hamming_to_true_naive.csv +5 -0
- test/new-results/partition-new-simu-annotation-performance/sw/mutation/d_muted_bases.csv +5 -0
- test/new-results/partition-new-simu-annotation-performance/sw/mutation/hamming_to_true_naive.csv +6 -0
- test/new-results/partition-new-simu-annotation-performance/sw/mutation/j_hamming_to_true_naive.csv +4 -0
- test/new-results/partition-new-simu-annotation-performance/sw/mutation/j_muted_bases.csv +6 -0
- test/new-results/partition-new-simu-annotation-performance/sw/mutation/mute_freqs.csv +28 -0
- test/new-results/partition-new-simu-annotation-performance/sw/mutation/muted_bases.csv +7 -0
- test/new-results/partition-new-simu-annotation-performance/sw/mutation/v_hamming_to_true_naive.csv +4 -0
- test/new-results/partition-new-simu-annotation-performance/sw/mutation/v_muted_bases.csv +4 -0
- test/new-results/partition-new-simu.yaml +1 -0
- test/new-results/run-times.csv +9 -0
- test/new-results/seed-partition-new-simu.yaml +1 -0
- test/new-results/test/parameters/data/hmm/all-mean-mute-freqs.csv +43 -0
- test/new-results/test/parameters/data/hmm/all-mean-n-muted.csv +155 -0
- test/new-results/test/parameters/data/hmm/all-probs.csv +44 -0
- test/new-results/test/parameters/data/hmm/cluster_size.csv +2 -0
- test/new-results/test/parameters/data/hmm/d-mean-mute-freqs.csv +43 -0
- test/new-results/test/parameters/data/hmm/d-mean-n-muted.csv +14 -0
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|
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|
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|
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|
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|
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|
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|
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1592
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|
1594
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A: 0.036749014910624996
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1600
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|
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IGHV1-18_star_01_105: 1.0
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- !!python/object:python.hmmwriter.State
|
|
1607
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emissions:
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|
1608
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|
1609
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A: 0.036749014910624996
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name: IGHV1-18_star_01_105
|
|
1619
|
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transitions:
|
|
1620
|
+
IGHV1-18_star_01_106: 1.0
|
|
1621
|
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- !!python/object:python.hmmwriter.State
|
|
1622
|
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emissions:
|
|
1623
|
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probs:
|
|
1624
|
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A: 0.036749014910624996
|
|
1625
|
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C: 0.036749014910624996
|
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1626
|
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1627
|
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T: 0.036749014910624996
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1628
|
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track: nukes
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1629
|
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extras:
|
|
1630
|
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ambiguous_char: N
|
|
1631
|
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ambiguous_emission_prob: 0.25
|
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1632
|
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|
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|
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|
|
1634
|
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|
|
1635
|
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IGHV1-18_star_01_107: 1.0
|
|
1636
|
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- !!python/object:python.hmmwriter.State
|
|
1637
|
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emissions:
|
|
1638
|
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probs:
|
|
1639
|
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A: 0.036749014910624996
|
|
1640
|
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C: 0.036749014910624996
|
|
1641
|
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|
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|
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|
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|
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1645
|
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ambiguous_char: N
|
|
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|
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ambiguous_emission_prob: 0.25
|
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1647
|
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|
|
1648
|
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|
|
1649
|
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transitions:
|
|
1650
|
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IGHV1-18_star_01_108: 1.0
|
|
1651
|
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- !!python/object:python.hmmwriter.State
|
|
1652
|
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emissions:
|
|
1653
|
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|
|
1654
|
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A: 0.036749014910624996
|
|
1655
|
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|
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|
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|
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T: 0.036749014910624996
|
|
1658
|
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|
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|
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1660
|
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ambiguous_char: N
|
|
1661
|
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ambiguous_emission_prob: 0.25
|
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1662
|
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|
|
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|
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|
|
1664
|
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transitions:
|
|
1665
|
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IGHV1-18_star_01_109: 1.0
|
|
1666
|
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- !!python/object:python.hmmwriter.State
|
|
1667
|
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emissions:
|
|
1668
|
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probs:
|
|
1669
|
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A: 0.036749014910624996
|
|
1670
|
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|
|
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|
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|
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1672
|
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|
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|
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|
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|
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1675
|
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ambiguous_char: N
|
|
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|
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ambiguous_emission_prob: 0.25
|
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1677
|
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germline: T
|
|
1678
|
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|
|
1679
|
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transitions:
|
|
1680
|
+
IGHV1-18_star_01_110: 1.0
|
|
1681
|
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- !!python/object:python.hmmwriter.State
|
|
1682
|
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emissions:
|
|
1683
|
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probs:
|
|
1684
|
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A: 0.036749014910624996
|
|
1685
|
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C: 0.036749014910624996
|
|
1686
|
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G: 0.889752955268125
|
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1687
|
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T: 0.036749014910624996
|
|
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|
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|
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extras:
|
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1690
|
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ambiguous_char: N
|
|
1691
|
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ambiguous_emission_prob: 0.25
|
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1692
|
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germline: G
|
|
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|
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|
|
1694
|
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transitions:
|
|
1695
|
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IGHV1-18_star_01_111: 1.0
|
|
1696
|
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- !!python/object:python.hmmwriter.State
|
|
1697
|
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emissions:
|
|
1698
|
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probs:
|
|
1699
|
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A: 0.036749014910624996
|
|
1700
|
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C: 0.889752955268125
|
|
1701
|
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G: 0.036749014910624996
|
|
1702
|
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T: 0.036749014910624996
|
|
1703
|
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1704
|
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extras:
|
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1705
|
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ambiguous_char: N
|
|
1706
|
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ambiguous_emission_prob: 0.25
|
|
1707
|
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germline: C
|
|
1708
|
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name: IGHV1-18_star_01_111
|
|
1709
|
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transitions:
|
|
1710
|
+
IGHV1-18_star_01_112: 1.0
|
|
1711
|
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- !!python/object:python.hmmwriter.State
|
|
1712
|
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emissions:
|
|
1713
|
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probs:
|
|
1714
|
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A: 0.036749014910624996
|
|
1715
|
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C: 0.036749014910624996
|
|
1716
|
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G: 0.889752955268125
|
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1717
|
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T: 0.036749014910624996
|
|
1718
|
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track: nukes
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|
1719
|
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extras:
|
|
1720
|
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ambiguous_char: N
|
|
1721
|
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ambiguous_emission_prob: 0.25
|
|
1722
|
+
germline: G
|
|
1723
|
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name: IGHV1-18_star_01_112
|
|
1724
|
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transitions:
|
|
1725
|
+
IGHV1-18_star_01_113: 1.0
|
|
1726
|
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- !!python/object:python.hmmwriter.State
|
|
1727
|
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emissions:
|
|
1728
|
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probs:
|
|
1729
|
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A: 0.889752955268125
|
|
1730
|
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C: 0.036749014910624996
|
|
1731
|
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G: 0.036749014910624996
|
|
1732
|
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T: 0.036749014910624996
|
|
1733
|
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track: nukes
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|
1734
|
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extras:
|
|
1735
|
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ambiguous_char: N
|
|
1736
|
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ambiguous_emission_prob: 0.25
|
|
1737
|
+
germline: A
|
|
1738
|
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name: IGHV1-18_star_01_113
|
|
1739
|
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transitions:
|
|
1740
|
+
IGHV1-18_star_01_114: 1.0
|
|
1741
|
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- !!python/object:python.hmmwriter.State
|
|
1742
|
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emissions:
|
|
1743
|
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probs:
|
|
1744
|
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A: 0.036749014910624996
|
|
1745
|
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C: 0.889752955268125
|
|
1746
|
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G: 0.036749014910624996
|
|
1747
|
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T: 0.036749014910624996
|
|
1748
|
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track: nukes
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|
1749
|
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extras:
|
|
1750
|
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ambiguous_char: N
|
|
1751
|
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ambiguous_emission_prob: 0.25
|
|
1752
|
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germline: C
|
|
1753
|
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name: IGHV1-18_star_01_114
|
|
1754
|
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transitions:
|
|
1755
|
+
IGHV1-18_star_01_115: 1.0
|
|
1756
|
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- !!python/object:python.hmmwriter.State
|
|
1757
|
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emissions:
|
|
1758
|
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probs:
|
|
1759
|
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A: 0.889752955268125
|
|
1760
|
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C: 0.036749014910624996
|
|
1761
|
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G: 0.036749014910624996
|
|
1762
|
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T: 0.036749014910624996
|
|
1763
|
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track: nukes
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1764
|
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extras:
|
|
1765
|
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ambiguous_char: N
|
|
1766
|
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ambiguous_emission_prob: 0.25
|
|
1767
|
+
germline: A
|
|
1768
|
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name: IGHV1-18_star_01_115
|
|
1769
|
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transitions:
|
|
1770
|
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IGHV1-18_star_01_116: 1.0
|
|
1771
|
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- !!python/object:python.hmmwriter.State
|
|
1772
|
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emissions:
|
|
1773
|
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probs:
|
|
1774
|
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A: 0.036749014910624996
|
|
1775
|
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C: 0.036749014910624996
|
|
1776
|
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G: 0.889752955268125
|
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1777
|
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T: 0.036749014910624996
|
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|
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|
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extras:
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|
1780
|
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ambiguous_char: N
|
|
1781
|
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ambiguous_emission_prob: 0.25
|
|
1782
|
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germline: G
|
|
1783
|
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name: IGHV1-18_star_01_116
|
|
1784
|
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transitions:
|
|
1785
|
+
IGHV1-18_star_01_117: 1.0
|
|
1786
|
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- !!python/object:python.hmmwriter.State
|
|
1787
|
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emissions:
|
|
1788
|
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probs:
|
|
1789
|
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A: 0.036749014910624996
|
|
1790
|
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C: 0.036749014910624996
|
|
1791
|
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G: 0.889752955268125
|
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1792
|
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T: 0.036749014910624996
|
|
1793
|
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track: nukes
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1794
|
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extras:
|
|
1795
|
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ambiguous_char: N
|
|
1796
|
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ambiguous_emission_prob: 0.25
|
|
1797
|
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germline: G
|
|
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|
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name: IGHV1-18_star_01_117
|
|
1799
|
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transitions:
|
|
1800
|
+
IGHV1-18_star_01_118: 1.0
|
|
1801
|
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- !!python/object:python.hmmwriter.State
|
|
1802
|
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emissions:
|
|
1803
|
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probs:
|
|
1804
|
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A: 0.036749014910624996
|
|
1805
|
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C: 0.889752955268125
|
|
1806
|
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G: 0.036749014910624996
|
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1807
|
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T: 0.036749014910624996
|
|
1808
|
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track: nukes
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1809
|
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extras:
|
|
1810
|
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ambiguous_char: N
|
|
1811
|
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ambiguous_emission_prob: 0.25
|
|
1812
|
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germline: C
|
|
1813
|
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name: IGHV1-18_star_01_118
|
|
1814
|
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transitions:
|
|
1815
|
+
IGHV1-18_star_01_119: 1.0
|
|
1816
|
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- !!python/object:python.hmmwriter.State
|
|
1817
|
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emissions:
|
|
1818
|
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probs:
|
|
1819
|
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A: 0.036749014910624996
|
|
1820
|
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C: 0.889752955268125
|
|
1821
|
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G: 0.036749014910624996
|
|
1822
|
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T: 0.036749014910624996
|
|
1823
|
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track: nukes
|
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1824
|
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extras:
|
|
1825
|
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ambiguous_char: N
|
|
1826
|
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ambiguous_emission_prob: 0.25
|
|
1827
|
+
germline: C
|
|
1828
|
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name: IGHV1-18_star_01_119
|
|
1829
|
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transitions:
|
|
1830
|
+
IGHV1-18_star_01_120: 1.0
|
|
1831
|
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- !!python/object:python.hmmwriter.State
|
|
1832
|
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emissions:
|
|
1833
|
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probs:
|
|
1834
|
+
A: 0.036749014910624996
|
|
1835
|
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C: 0.889752955268125
|
|
1836
|
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G: 0.036749014910624996
|
|
1837
|
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T: 0.036749014910624996
|
|
1838
|
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track: nukes
|
|
1839
|
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extras:
|
|
1840
|
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|
|
1841
|
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ambiguous_emission_prob: 0.25
|
|
1842
|
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germline: C
|
|
1843
|
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name: IGHV1-18_star_01_120
|
|
1844
|
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transitions:
|
|
1845
|
+
IGHV1-18_star_01_121: 1.0
|
|
1846
|
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- !!python/object:python.hmmwriter.State
|
|
1847
|
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emissions:
|
|
1848
|
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probs:
|
|
1849
|
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A: 0.036749014910624996
|
|
1850
|
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C: 0.889752955268125
|
|
1851
|
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G: 0.036749014910624996
|
|
1852
|
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T: 0.036749014910624996
|
|
1853
|
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track: nukes
|
|
1854
|
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extras:
|
|
1855
|
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ambiguous_char: N
|
|
1856
|
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ambiguous_emission_prob: 0.25
|
|
1857
|
+
germline: C
|
|
1858
|
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name: IGHV1-18_star_01_121
|
|
1859
|
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transitions:
|
|
1860
|
+
IGHV1-18_star_01_122: 1.0
|
|
1861
|
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- !!python/object:python.hmmwriter.State
|
|
1862
|
+
emissions:
|
|
1863
|
+
probs:
|
|
1864
|
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A: 0.036749014910624996
|
|
1865
|
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C: 0.036749014910624996
|
|
1866
|
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G: 0.036749014910624996
|
|
1867
|
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T: 0.889752955268125
|
|
1868
|
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track: nukes
|
|
1869
|
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extras:
|
|
1870
|
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ambiguous_char: N
|
|
1871
|
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ambiguous_emission_prob: 0.25
|
|
1872
|
+
germline: T
|
|
1873
|
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name: IGHV1-18_star_01_122
|
|
1874
|
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transitions:
|
|
1875
|
+
IGHV1-18_star_01_123: 1.0
|
|
1876
|
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- !!python/object:python.hmmwriter.State
|
|
1877
|
+
emissions:
|
|
1878
|
+
probs:
|
|
1879
|
+
A: 0.036749014910624996
|
|
1880
|
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C: 0.036749014910624996
|
|
1881
|
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G: 0.889752955268125
|
|
1882
|
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T: 0.036749014910624996
|
|
1883
|
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track: nukes
|
|
1884
|
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extras:
|
|
1885
|
+
ambiguous_char: N
|
|
1886
|
+
ambiguous_emission_prob: 0.25
|
|
1887
|
+
germline: G
|
|
1888
|
+
name: IGHV1-18_star_01_123
|
|
1889
|
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transitions:
|
|
1890
|
+
IGHV1-18_star_01_124: 1.0
|
|
1891
|
+
- !!python/object:python.hmmwriter.State
|
|
1892
|
+
emissions:
|
|
1893
|
+
probs:
|
|
1894
|
+
A: 0.036749014910624996
|
|
1895
|
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C: 0.036749014910624996
|
|
1896
|
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G: 0.889752955268125
|
|
1897
|
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T: 0.036749014910624996
|
|
1898
|
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track: nukes
|
|
1899
|
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extras:
|
|
1900
|
+
ambiguous_char: N
|
|
1901
|
+
ambiguous_emission_prob: 0.25
|
|
1902
|
+
germline: G
|
|
1903
|
+
name: IGHV1-18_star_01_124
|
|
1904
|
+
transitions:
|
|
1905
|
+
IGHV1-18_star_01_125: 1.0
|
|
1906
|
+
- !!python/object:python.hmmwriter.State
|
|
1907
|
+
emissions:
|
|
1908
|
+
probs:
|
|
1909
|
+
A: 0.889752955268125
|
|
1910
|
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C: 0.036749014910624996
|
|
1911
|
+
G: 0.036749014910624996
|
|
1912
|
+
T: 0.036749014910624996
|
|
1913
|
+
track: nukes
|
|
1914
|
+
extras:
|
|
1915
|
+
ambiguous_char: N
|
|
1916
|
+
ambiguous_emission_prob: 0.25
|
|
1917
|
+
germline: A
|
|
1918
|
+
name: IGHV1-18_star_01_125
|
|
1919
|
+
transitions:
|
|
1920
|
+
IGHV1-18_star_01_126: 1.0
|
|
1921
|
+
- !!python/object:python.hmmwriter.State
|
|
1922
|
+
emissions:
|
|
1923
|
+
probs:
|
|
1924
|
+
A: 0.036749014910624996
|
|
1925
|
+
C: 0.889752955268125
|
|
1926
|
+
G: 0.036749014910624996
|
|
1927
|
+
T: 0.036749014910624996
|
|
1928
|
+
track: nukes
|
|
1929
|
+
extras:
|
|
1930
|
+
ambiguous_char: N
|
|
1931
|
+
ambiguous_emission_prob: 0.25
|
|
1932
|
+
germline: C
|
|
1933
|
+
name: IGHV1-18_star_01_126
|
|
1934
|
+
transitions:
|
|
1935
|
+
IGHV1-18_star_01_127: 1.0
|
|
1936
|
+
- !!python/object:python.hmmwriter.State
|
|
1937
|
+
emissions:
|
|
1938
|
+
probs:
|
|
1939
|
+
A: 0.889752955268125
|
|
1940
|
+
C: 0.036749014910624996
|
|
1941
|
+
G: 0.036749014910624996
|
|
1942
|
+
T: 0.036749014910624996
|
|
1943
|
+
track: nukes
|
|
1944
|
+
extras:
|
|
1945
|
+
ambiguous_char: N
|
|
1946
|
+
ambiguous_emission_prob: 0.25
|
|
1947
|
+
germline: A
|
|
1948
|
+
name: IGHV1-18_star_01_127
|
|
1949
|
+
transitions:
|
|
1950
|
+
IGHV1-18_star_01_128: 1.0
|
|
1951
|
+
- !!python/object:python.hmmwriter.State
|
|
1952
|
+
emissions:
|
|
1953
|
+
probs:
|
|
1954
|
+
A: 0.889752955268125
|
|
1955
|
+
C: 0.036749014910624996
|
|
1956
|
+
G: 0.036749014910624996
|
|
1957
|
+
T: 0.036749014910624996
|
|
1958
|
+
track: nukes
|
|
1959
|
+
extras:
|
|
1960
|
+
ambiguous_char: N
|
|
1961
|
+
ambiguous_emission_prob: 0.25
|
|
1962
|
+
germline: A
|
|
1963
|
+
name: IGHV1-18_star_01_128
|
|
1964
|
+
transitions:
|
|
1965
|
+
IGHV1-18_star_01_129: 1.0
|
|
1966
|
+
- !!python/object:python.hmmwriter.State
|
|
1967
|
+
emissions:
|
|
1968
|
+
probs:
|
|
1969
|
+
A: 0.036749014910624996
|
|
1970
|
+
C: 0.036749014910624996
|
|
1971
|
+
G: 0.889752955268125
|
|
1972
|
+
T: 0.036749014910624996
|
|
1973
|
+
track: nukes
|
|
1974
|
+
extras:
|
|
1975
|
+
ambiguous_char: N
|
|
1976
|
+
ambiguous_emission_prob: 0.25
|
|
1977
|
+
germline: G
|
|
1978
|
+
name: IGHV1-18_star_01_129
|
|
1979
|
+
transitions:
|
|
1980
|
+
IGHV1-18_star_01_130: 1.0
|
|
1981
|
+
- !!python/object:python.hmmwriter.State
|
|
1982
|
+
emissions:
|
|
1983
|
+
probs:
|
|
1984
|
+
A: 0.036749014910624996
|
|
1985
|
+
C: 0.036749014910624996
|
|
1986
|
+
G: 0.889752955268125
|
|
1987
|
+
T: 0.036749014910624996
|
|
1988
|
+
track: nukes
|
|
1989
|
+
extras:
|
|
1990
|
+
ambiguous_char: N
|
|
1991
|
+
ambiguous_emission_prob: 0.25
|
|
1992
|
+
germline: G
|
|
1993
|
+
name: IGHV1-18_star_01_130
|
|
1994
|
+
transitions:
|
|
1995
|
+
IGHV1-18_star_01_131: 1.0
|
|
1996
|
+
- !!python/object:python.hmmwriter.State
|
|
1997
|
+
emissions:
|
|
1998
|
+
probs:
|
|
1999
|
+
A: 0.036749014910624996
|
|
2000
|
+
C: 0.036749014910624996
|
|
2001
|
+
G: 0.889752955268125
|
|
2002
|
+
T: 0.036749014910624996
|
|
2003
|
+
track: nukes
|
|
2004
|
+
extras:
|
|
2005
|
+
ambiguous_char: N
|
|
2006
|
+
ambiguous_emission_prob: 0.25
|
|
2007
|
+
germline: G
|
|
2008
|
+
name: IGHV1-18_star_01_131
|
|
2009
|
+
transitions:
|
|
2010
|
+
IGHV1-18_star_01_132: 1.0
|
|
2011
|
+
- !!python/object:python.hmmwriter.State
|
|
2012
|
+
emissions:
|
|
2013
|
+
probs:
|
|
2014
|
+
A: 0.036749014910624996
|
|
2015
|
+
C: 0.889752955268125
|
|
2016
|
+
G: 0.036749014910624996
|
|
2017
|
+
T: 0.036749014910624996
|
|
2018
|
+
track: nukes
|
|
2019
|
+
extras:
|
|
2020
|
+
ambiguous_char: N
|
|
2021
|
+
ambiguous_emission_prob: 0.25
|
|
2022
|
+
germline: C
|
|
2023
|
+
name: IGHV1-18_star_01_132
|
|
2024
|
+
transitions:
|
|
2025
|
+
IGHV1-18_star_01_133: 1.0
|
|
2026
|
+
- !!python/object:python.hmmwriter.State
|
|
2027
|
+
emissions:
|
|
2028
|
+
probs:
|
|
2029
|
+
A: 0.036749014910624996
|
|
2030
|
+
C: 0.036749014910624996
|
|
2031
|
+
G: 0.036749014910624996
|
|
2032
|
+
T: 0.889752955268125
|
|
2033
|
+
track: nukes
|
|
2034
|
+
extras:
|
|
2035
|
+
ambiguous_char: N
|
|
2036
|
+
ambiguous_emission_prob: 0.25
|
|
2037
|
+
germline: T
|
|
2038
|
+
name: IGHV1-18_star_01_133
|
|
2039
|
+
transitions:
|
|
2040
|
+
IGHV1-18_star_01_134: 1.0
|
|
2041
|
+
- !!python/object:python.hmmwriter.State
|
|
2042
|
+
emissions:
|
|
2043
|
+
probs:
|
|
2044
|
+
A: 0.036749014910624996
|
|
2045
|
+
C: 0.036749014910624996
|
|
2046
|
+
G: 0.036749014910624996
|
|
2047
|
+
T: 0.889752955268125
|
|
2048
|
+
track: nukes
|
|
2049
|
+
extras:
|
|
2050
|
+
ambiguous_char: N
|
|
2051
|
+
ambiguous_emission_prob: 0.25
|
|
2052
|
+
germline: T
|
|
2053
|
+
name: IGHV1-18_star_01_134
|
|
2054
|
+
transitions:
|
|
2055
|
+
IGHV1-18_star_01_135: 1.0
|
|
2056
|
+
- !!python/object:python.hmmwriter.State
|
|
2057
|
+
emissions:
|
|
2058
|
+
probs:
|
|
2059
|
+
A: 0.036749014910624996
|
|
2060
|
+
C: 0.036749014910624996
|
|
2061
|
+
G: 0.889752955268125
|
|
2062
|
+
T: 0.036749014910624996
|
|
2063
|
+
track: nukes
|
|
2064
|
+
extras:
|
|
2065
|
+
ambiguous_char: N
|
|
2066
|
+
ambiguous_emission_prob: 0.25
|
|
2067
|
+
germline: G
|
|
2068
|
+
name: IGHV1-18_star_01_135
|
|
2069
|
+
transitions:
|
|
2070
|
+
IGHV1-18_star_01_136: 1.0
|
|
2071
|
+
- !!python/object:python.hmmwriter.State
|
|
2072
|
+
emissions:
|
|
2073
|
+
probs:
|
|
2074
|
+
A: 0.889752955268125
|
|
2075
|
+
C: 0.036749014910624996
|
|
2076
|
+
G: 0.036749014910624996
|
|
2077
|
+
T: 0.036749014910624996
|
|
2078
|
+
track: nukes
|
|
2079
|
+
extras:
|
|
2080
|
+
ambiguous_char: N
|
|
2081
|
+
ambiguous_emission_prob: 0.25
|
|
2082
|
+
germline: A
|
|
2083
|
+
name: IGHV1-18_star_01_136
|
|
2084
|
+
transitions:
|
|
2085
|
+
IGHV1-18_star_01_137: 1.0
|
|
2086
|
+
- !!python/object:python.hmmwriter.State
|
|
2087
|
+
emissions:
|
|
2088
|
+
probs:
|
|
2089
|
+
A: 0.036749014910624996
|
|
2090
|
+
C: 0.036749014910624996
|
|
2091
|
+
G: 0.889752955268125
|
|
2092
|
+
T: 0.036749014910624996
|
|
2093
|
+
track: nukes
|
|
2094
|
+
extras:
|
|
2095
|
+
ambiguous_char: N
|
|
2096
|
+
ambiguous_emission_prob: 0.25
|
|
2097
|
+
germline: G
|
|
2098
|
+
name: IGHV1-18_star_01_137
|
|
2099
|
+
transitions:
|
|
2100
|
+
IGHV1-18_star_01_138: 1.0
|
|
2101
|
+
- !!python/object:python.hmmwriter.State
|
|
2102
|
+
emissions:
|
|
2103
|
+
probs:
|
|
2104
|
+
A: 0.036749014910624996
|
|
2105
|
+
C: 0.036749014910624996
|
|
2106
|
+
G: 0.036749014910624996
|
|
2107
|
+
T: 0.889752955268125
|
|
2108
|
+
track: nukes
|
|
2109
|
+
extras:
|
|
2110
|
+
ambiguous_char: N
|
|
2111
|
+
ambiguous_emission_prob: 0.25
|
|
2112
|
+
germline: T
|
|
2113
|
+
name: IGHV1-18_star_01_138
|
|
2114
|
+
transitions:
|
|
2115
|
+
IGHV1-18_star_01_139: 1.0
|
|
2116
|
+
- !!python/object:python.hmmwriter.State
|
|
2117
|
+
emissions:
|
|
2118
|
+
probs:
|
|
2119
|
+
A: 0.036749014910624996
|
|
2120
|
+
C: 0.036749014910624996
|
|
2121
|
+
G: 0.889752955268125
|
|
2122
|
+
T: 0.036749014910624996
|
|
2123
|
+
track: nukes
|
|
2124
|
+
extras:
|
|
2125
|
+
ambiguous_char: N
|
|
2126
|
+
ambiguous_emission_prob: 0.25
|
|
2127
|
+
germline: G
|
|
2128
|
+
name: IGHV1-18_star_01_139
|
|
2129
|
+
transitions:
|
|
2130
|
+
IGHV1-18_star_01_140: 1.0
|
|
2131
|
+
- !!python/object:python.hmmwriter.State
|
|
2132
|
+
emissions:
|
|
2133
|
+
probs:
|
|
2134
|
+
A: 0.036749014910624996
|
|
2135
|
+
C: 0.036749014910624996
|
|
2136
|
+
G: 0.889752955268125
|
|
2137
|
+
T: 0.036749014910624996
|
|
2138
|
+
track: nukes
|
|
2139
|
+
extras:
|
|
2140
|
+
ambiguous_char: N
|
|
2141
|
+
ambiguous_emission_prob: 0.25
|
|
2142
|
+
germline: G
|
|
2143
|
+
name: IGHV1-18_star_01_140
|
|
2144
|
+
transitions:
|
|
2145
|
+
IGHV1-18_star_01_141: 1.0
|
|
2146
|
+
- !!python/object:python.hmmwriter.State
|
|
2147
|
+
emissions:
|
|
2148
|
+
probs:
|
|
2149
|
+
A: 0.889752955268125
|
|
2150
|
+
C: 0.036749014910624996
|
|
2151
|
+
G: 0.036749014910624996
|
|
2152
|
+
T: 0.036749014910624996
|
|
2153
|
+
track: nukes
|
|
2154
|
+
extras:
|
|
2155
|
+
ambiguous_char: N
|
|
2156
|
+
ambiguous_emission_prob: 0.25
|
|
2157
|
+
germline: A
|
|
2158
|
+
name: IGHV1-18_star_01_141
|
|
2159
|
+
transitions:
|
|
2160
|
+
IGHV1-18_star_01_142: 1.0
|
|
2161
|
+
- !!python/object:python.hmmwriter.State
|
|
2162
|
+
emissions:
|
|
2163
|
+
probs:
|
|
2164
|
+
A: 0.036749014910624996
|
|
2165
|
+
C: 0.036749014910624996
|
|
2166
|
+
G: 0.036749014910624996
|
|
2167
|
+
T: 0.889752955268125
|
|
2168
|
+
track: nukes
|
|
2169
|
+
extras:
|
|
2170
|
+
ambiguous_char: N
|
|
2171
|
+
ambiguous_emission_prob: 0.25
|
|
2172
|
+
germline: T
|
|
2173
|
+
name: IGHV1-18_star_01_142
|
|
2174
|
+
transitions:
|
|
2175
|
+
IGHV1-18_star_01_143: 1.0
|
|
2176
|
+
- !!python/object:python.hmmwriter.State
|
|
2177
|
+
emissions:
|
|
2178
|
+
probs:
|
|
2179
|
+
A: 0.036749014910624996
|
|
2180
|
+
C: 0.036749014910624996
|
|
2181
|
+
G: 0.889752955268125
|
|
2182
|
+
T: 0.036749014910624996
|
|
2183
|
+
track: nukes
|
|
2184
|
+
extras:
|
|
2185
|
+
ambiguous_char: N
|
|
2186
|
+
ambiguous_emission_prob: 0.25
|
|
2187
|
+
germline: G
|
|
2188
|
+
name: IGHV1-18_star_01_143
|
|
2189
|
+
transitions:
|
|
2190
|
+
IGHV1-18_star_01_144: 1.0
|
|
2191
|
+
- !!python/object:python.hmmwriter.State
|
|
2192
|
+
emissions:
|
|
2193
|
+
probs:
|
|
2194
|
+
A: 0.036749014910624996
|
|
2195
|
+
C: 0.036749014910624996
|
|
2196
|
+
G: 0.889752955268125
|
|
2197
|
+
T: 0.036749014910624996
|
|
2198
|
+
track: nukes
|
|
2199
|
+
extras:
|
|
2200
|
+
ambiguous_char: N
|
|
2201
|
+
ambiguous_emission_prob: 0.25
|
|
2202
|
+
germline: G
|
|
2203
|
+
name: IGHV1-18_star_01_144
|
|
2204
|
+
transitions:
|
|
2205
|
+
IGHV1-18_star_01_145: 1.0
|
|
2206
|
+
- !!python/object:python.hmmwriter.State
|
|
2207
|
+
emissions:
|
|
2208
|
+
probs:
|
|
2209
|
+
A: 0.036749014910624996
|
|
2210
|
+
C: 0.036749014910624996
|
|
2211
|
+
G: 0.889752955268125
|
|
2212
|
+
T: 0.036749014910624996
|
|
2213
|
+
track: nukes
|
|
2214
|
+
extras:
|
|
2215
|
+
ambiguous_char: N
|
|
2216
|
+
ambiguous_emission_prob: 0.25
|
|
2217
|
+
germline: G
|
|
2218
|
+
name: IGHV1-18_star_01_145
|
|
2219
|
+
transitions:
|
|
2220
|
+
IGHV1-18_star_01_146: 1.0
|
|
2221
|
+
- !!python/object:python.hmmwriter.State
|
|
2222
|
+
emissions:
|
|
2223
|
+
probs:
|
|
2224
|
+
A: 0.889752955268125
|
|
2225
|
+
C: 0.036749014910624996
|
|
2226
|
+
G: 0.036749014910624996
|
|
2227
|
+
T: 0.036749014910624996
|
|
2228
|
+
track: nukes
|
|
2229
|
+
extras:
|
|
2230
|
+
ambiguous_char: N
|
|
2231
|
+
ambiguous_emission_prob: 0.25
|
|
2232
|
+
germline: A
|
|
2233
|
+
name: IGHV1-18_star_01_146
|
|
2234
|
+
transitions:
|
|
2235
|
+
IGHV1-18_star_01_147: 1.0
|
|
2236
|
+
- !!python/object:python.hmmwriter.State
|
|
2237
|
+
emissions:
|
|
2238
|
+
probs:
|
|
2239
|
+
A: 0.036749014910624996
|
|
2240
|
+
C: 0.036749014910624996
|
|
2241
|
+
G: 0.036749014910624996
|
|
2242
|
+
T: 0.889752955268125
|
|
2243
|
+
track: nukes
|
|
2244
|
+
extras:
|
|
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|
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2524
|
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|
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2537
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|
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2539
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|
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2552
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|
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|
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|
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|
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IGHV1-18_star_01_172: 1.0
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- !!python/object:python.hmmwriter.State
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IGHV1-18_star_01_173: 1.0
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|
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- !!python/object:python.hmmwriter.State
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- !!python/object:python.hmmwriter.State
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|
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|
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IGHV1-18_star_01_178: 1.0
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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2800
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|
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|
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|
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|
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|
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|
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|
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2807
|
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|
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|
2809
|
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|
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|
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|
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|
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|
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|
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|
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IGHV1-18_star_01_186: 1.0
|
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|
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|
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2822
|
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emissions:
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|
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probs:
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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2837
|
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emissions:
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2838
|
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probs:
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|
2839
|
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A: 0.889752955268125
|
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|
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|
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2842
|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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IGHV1-18_star_01_188: 1.0
|
|
2851
|
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|
|
2852
|
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emissions:
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|
2853
|
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probs:
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|
2854
|
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A: 0.036749014910624996
|
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|
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|
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|
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|
2860
|
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|
|
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|
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|
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|
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|
|
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|
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|
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|
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emissions:
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2868
|
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|
|
2869
|
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2870
|
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|
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|
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|
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2875
|
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|
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2876
|
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|
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|
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2879
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2880
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IGHV1-18_star_01_190: 1.0
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- !!python/object:python.hmmwriter.State
|
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|
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2883
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|
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|
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|
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|
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|
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|
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IGHV1-18_star_01_191: 1.0
|
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2896
|
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- !!python/object:python.hmmwriter.State
|
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|
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|
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|
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|
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A: 0.036749014910624996
|
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2900
|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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2910
|
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IGHV1-18_star_01_192: 1.0
|
|
2911
|
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- !!python/object:python.hmmwriter.State
|
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|
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2913
|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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2924
|
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|
|
2925
|
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IGHV1-18_star_01_193: 1.0
|
|
2926
|
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- !!python/object:python.hmmwriter.State
|
|
2927
|
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|
2928
|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
|
2940
|
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IGHV1-18_star_01_194: 1.0
|
|
2941
|
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- !!python/object:python.hmmwriter.State
|
|
2942
|
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emissions:
|
|
2943
|
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|
2944
|
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|
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|
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|
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|
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|
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|
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|
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|
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2955
|
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IGHV1-18_star_01_195: 1.0
|
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|
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- !!python/object:python.hmmwriter.State
|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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IGHV1-18_star_01_196: 1.0
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2971
|
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- !!python/object:python.hmmwriter.State
|
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|
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2973
|
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2974
|
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|
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|
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|
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|
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2985
|
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IGHV1-18_star_01_197: 1.0
|
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2986
|
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- !!python/object:python.hmmwriter.State
|
|
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|
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emissions:
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|
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2989
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A: 0.036749014910624996
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2990
|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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3000
|
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IGHV1-18_star_01_198: 1.0
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3001
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|
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|
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|
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probs:
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|
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3007
|
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|
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|
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|
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|
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|
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|
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|
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3015
|
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IGHV1-18_star_01_199: 1.0
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|
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- !!python/object:python.hmmwriter.State
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
|
3030
|
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IGHV1-18_star_01_200: 1.0
|
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3031
|
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|
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3032
|
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emissions:
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3033
|
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probs:
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|
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|
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|
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|
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|
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IGHV1-18_star_01_201: 1.0
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|
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|
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|
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|
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|
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|
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|
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|
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3062
|
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emissions:
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3063
|
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3064
|
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A: 0.036749014910624996
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|
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|
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|
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|
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|
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3075
|
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IGHV1-18_star_01_203: 1.0
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|
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|
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3077
|
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3078
|
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probs:
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|
3079
|
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A: 0.036749014910624996
|
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|
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C: 0.889752955268125
|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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3090
|
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IGHV1-18_star_01_204: 1.0
|
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3091
|
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- !!python/object:python.hmmwriter.State
|
|
3092
|
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emissions:
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|
3093
|
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probs:
|
|
3094
|
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A: 0.889752955268125
|
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|
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C: 0.036749014910624996
|
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|
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|
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|
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|
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|
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|
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|
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|
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3105
|
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IGHV1-18_star_01_205: 1.0
|
|
3106
|
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- !!python/object:python.hmmwriter.State
|
|
3107
|
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emissions:
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3108
|
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probs:
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|
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|
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A: 0.036749014910624996
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|
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C: 0.889752955268125
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|
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|
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T: 0.036749014910624996
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|
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|
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|
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|
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|
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|
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|
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|
|
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|
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3120
|
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IGHV1-18_star_01_206: 1.0
|
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|
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- !!python/object:python.hmmwriter.State
|
|
3122
|
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emissions:
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|
3123
|
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probs:
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|
3124
|
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A: 0.036749014910624996
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|
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C: 0.889752955268125
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|
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G: 0.036749014910624996
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|
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T: 0.036749014910624996
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|
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|
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|
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|
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|
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|
|
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|
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|
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|
3135
|
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IGHV1-18_star_01_207: 1.0
|
|
3136
|
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- !!python/object:python.hmmwriter.State
|
|
3137
|
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emissions:
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|
3138
|
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probs:
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|
3139
|
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A: 0.889752955268125
|
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|
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C: 0.036749014910624996
|
|
3141
|
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G: 0.036749014910624996
|
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|
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T: 0.036749014910624996
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|
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|
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|
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|
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3147
|
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|
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|
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|
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|
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|
3150
|
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IGHV1-18_star_01_208: 1.0
|
|
3151
|
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- !!python/object:python.hmmwriter.State
|
|
3152
|
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emissions:
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|
3153
|
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probs:
|
|
3154
|
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A: 0.036749014910624996
|
|
3155
|
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C: 0.036749014910624996
|
|
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|
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G: 0.036749014910624996
|
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3157
|
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T: 0.889752955268125
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|
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|
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|
3160
|
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|
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|
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|
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|
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|
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|
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|
|
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|
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transitions:
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|
3165
|
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IGHV1-18_star_01_209: 1.0
|
|
3166
|
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- !!python/object:python.hmmwriter.State
|
|
3167
|
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emissions:
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|
3168
|
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probs:
|
|
3169
|
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A: 0.036749014910624996
|
|
3170
|
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C: 0.036749014910624996
|
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|
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G: 0.889752955268125
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3172
|
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T: 0.036749014910624996
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|
3173
|
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|
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|
3175
|
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|
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|
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|
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|
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|
|
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|
|
3180
|
+
IGHV1-18_star_01_210: 1.0
|
|
3181
|
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- !!python/object:python.hmmwriter.State
|
|
3182
|
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emissions:
|
|
3183
|
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probs:
|
|
3184
|
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A: 0.889752955268125
|
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3185
|
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C: 0.036749014910624996
|
|
3186
|
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G: 0.036749014910624996
|
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3187
|
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T: 0.036749014910624996
|
|
3188
|
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track: nukes
|
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3189
|
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extras:
|
|
3190
|
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ambiguous_char: N
|
|
3191
|
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ambiguous_emission_prob: 0.25
|
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3192
|
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germline: A
|
|
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|
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name: IGHV1-18_star_01_210
|
|
3194
|
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transitions:
|
|
3195
|
+
IGHV1-18_star_01_211: 1.0
|
|
3196
|
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- !!python/object:python.hmmwriter.State
|
|
3197
|
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emissions:
|
|
3198
|
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probs:
|
|
3199
|
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A: 0.036749014910624996
|
|
3200
|
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C: 0.889752955268125
|
|
3201
|
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G: 0.036749014910624996
|
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3202
|
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T: 0.036749014910624996
|
|
3203
|
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3204
|
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extras:
|
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3205
|
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ambiguous_char: N
|
|
3206
|
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ambiguous_emission_prob: 0.25
|
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3207
|
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|
|
3208
|
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|
|
3209
|
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|
|
3210
|
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IGHV1-18_star_01_212: 1.0
|
|
3211
|
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- !!python/object:python.hmmwriter.State
|
|
3212
|
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emissions:
|
|
3213
|
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|
|
3214
|
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A: 0.036749014910624996
|
|
3215
|
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C: 0.889752955268125
|
|
3216
|
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|
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3217
|
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T: 0.036749014910624996
|
|
3218
|
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3219
|
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extras:
|
|
3220
|
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ambiguous_char: N
|
|
3221
|
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ambiguous_emission_prob: 0.25
|
|
3222
|
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germline: C
|
|
3223
|
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name: IGHV1-18_star_01_212
|
|
3224
|
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transitions:
|
|
3225
|
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IGHV1-18_star_01_213: 1.0
|
|
3226
|
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- !!python/object:python.hmmwriter.State
|
|
3227
|
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emissions:
|
|
3228
|
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probs:
|
|
3229
|
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A: 0.889752955268125
|
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3230
|
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C: 0.036749014910624996
|
|
3231
|
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G: 0.036749014910624996
|
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3232
|
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T: 0.036749014910624996
|
|
3233
|
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3234
|
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extras:
|
|
3235
|
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ambiguous_char: N
|
|
3236
|
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ambiguous_emission_prob: 0.25
|
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3237
|
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germline: A
|
|
3238
|
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name: IGHV1-18_star_01_213
|
|
3239
|
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transitions:
|
|
3240
|
+
IGHV1-18_star_01_214: 1.0
|
|
3241
|
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- !!python/object:python.hmmwriter.State
|
|
3242
|
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emissions:
|
|
3243
|
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probs:
|
|
3244
|
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A: 0.036749014910624996
|
|
3245
|
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C: 0.889752955268125
|
|
3246
|
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G: 0.036749014910624996
|
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3247
|
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T: 0.036749014910624996
|
|
3248
|
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3249
|
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extras:
|
|
3250
|
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ambiguous_char: N
|
|
3251
|
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ambiguous_emission_prob: 0.25
|
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3252
|
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germline: C
|
|
3253
|
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name: IGHV1-18_star_01_214
|
|
3254
|
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transitions:
|
|
3255
|
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IGHV1-18_star_01_215: 1.0
|
|
3256
|
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- !!python/object:python.hmmwriter.State
|
|
3257
|
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emissions:
|
|
3258
|
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probs:
|
|
3259
|
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A: 0.889752955268125
|
|
3260
|
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C: 0.036749014910624996
|
|
3261
|
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G: 0.036749014910624996
|
|
3262
|
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T: 0.036749014910624996
|
|
3263
|
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track: nukes
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3264
|
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extras:
|
|
3265
|
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ambiguous_char: N
|
|
3266
|
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ambiguous_emission_prob: 0.25
|
|
3267
|
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germline: A
|
|
3268
|
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name: IGHV1-18_star_01_215
|
|
3269
|
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transitions:
|
|
3270
|
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IGHV1-18_star_01_216: 1.0
|
|
3271
|
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- !!python/object:python.hmmwriter.State
|
|
3272
|
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emissions:
|
|
3273
|
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probs:
|
|
3274
|
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A: 0.036749014910624996
|
|
3275
|
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C: 0.036749014910624996
|
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3276
|
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G: 0.889752955268125
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3277
|
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T: 0.036749014910624996
|
|
3278
|
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3279
|
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|
|
3280
|
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ambiguous_char: N
|
|
3281
|
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ambiguous_emission_prob: 0.25
|
|
3282
|
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germline: G
|
|
3283
|
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name: IGHV1-18_star_01_216
|
|
3284
|
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transitions:
|
|
3285
|
+
IGHV1-18_star_01_217: 1.0
|
|
3286
|
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- !!python/object:python.hmmwriter.State
|
|
3287
|
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emissions:
|
|
3288
|
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probs:
|
|
3289
|
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A: 0.889752955268125
|
|
3290
|
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C: 0.036749014910624996
|
|
3291
|
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G: 0.036749014910624996
|
|
3292
|
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T: 0.036749014910624996
|
|
3293
|
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track: nukes
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|
3294
|
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extras:
|
|
3295
|
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ambiguous_char: N
|
|
3296
|
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ambiguous_emission_prob: 0.25
|
|
3297
|
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germline: A
|
|
3298
|
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name: IGHV1-18_star_01_217
|
|
3299
|
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transitions:
|
|
3300
|
+
IGHV1-18_star_01_218: 1.0
|
|
3301
|
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- !!python/object:python.hmmwriter.State
|
|
3302
|
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emissions:
|
|
3303
|
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probs:
|
|
3304
|
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A: 0.036749014910624996
|
|
3305
|
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C: 0.889752955268125
|
|
3306
|
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G: 0.036749014910624996
|
|
3307
|
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T: 0.036749014910624996
|
|
3308
|
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track: nukes
|
|
3309
|
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extras:
|
|
3310
|
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ambiguous_char: N
|
|
3311
|
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ambiguous_emission_prob: 0.25
|
|
3312
|
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germline: C
|
|
3313
|
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name: IGHV1-18_star_01_218
|
|
3314
|
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transitions:
|
|
3315
|
+
IGHV1-18_star_01_219: 1.0
|
|
3316
|
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- !!python/object:python.hmmwriter.State
|
|
3317
|
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emissions:
|
|
3318
|
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probs:
|
|
3319
|
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A: 0.889752955268125
|
|
3320
|
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C: 0.036749014910624996
|
|
3321
|
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G: 0.036749014910624996
|
|
3322
|
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T: 0.036749014910624996
|
|
3323
|
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track: nukes
|
|
3324
|
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extras:
|
|
3325
|
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ambiguous_char: N
|
|
3326
|
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ambiguous_emission_prob: 0.25
|
|
3327
|
+
germline: A
|
|
3328
|
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name: IGHV1-18_star_01_219
|
|
3329
|
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transitions:
|
|
3330
|
+
IGHV1-18_star_01_220: 1.0
|
|
3331
|
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- !!python/object:python.hmmwriter.State
|
|
3332
|
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emissions:
|
|
3333
|
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probs:
|
|
3334
|
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A: 0.036749014910624996
|
|
3335
|
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C: 0.889752955268125
|
|
3336
|
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G: 0.036749014910624996
|
|
3337
|
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T: 0.036749014910624996
|
|
3338
|
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track: nukes
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3339
|
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extras:
|
|
3340
|
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ambiguous_char: N
|
|
3341
|
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ambiguous_emission_prob: 0.25
|
|
3342
|
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germline: C
|
|
3343
|
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name: IGHV1-18_star_01_220
|
|
3344
|
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transitions:
|
|
3345
|
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IGHV1-18_star_01_221: 1.0
|
|
3346
|
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- !!python/object:python.hmmwriter.State
|
|
3347
|
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emissions:
|
|
3348
|
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probs:
|
|
3349
|
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A: 0.889752955268125
|
|
3350
|
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C: 0.036749014910624996
|
|
3351
|
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G: 0.036749014910624996
|
|
3352
|
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T: 0.036749014910624996
|
|
3353
|
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track: nukes
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|
3354
|
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extras:
|
|
3355
|
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ambiguous_char: N
|
|
3356
|
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ambiguous_emission_prob: 0.25
|
|
3357
|
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germline: A
|
|
3358
|
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name: IGHV1-18_star_01_221
|
|
3359
|
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transitions:
|
|
3360
|
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IGHV1-18_star_01_222: 1.0
|
|
3361
|
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- !!python/object:python.hmmwriter.State
|
|
3362
|
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emissions:
|
|
3363
|
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probs:
|
|
3364
|
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A: 0.036749014910624996
|
|
3365
|
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C: 0.036749014910624996
|
|
3366
|
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G: 0.036749014910624996
|
|
3367
|
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T: 0.889752955268125
|
|
3368
|
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track: nukes
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3369
|
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extras:
|
|
3370
|
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|
|
3371
|
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|
|
3372
|
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germline: T
|
|
3373
|
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|
|
3374
|
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transitions:
|
|
3375
|
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IGHV1-18_star_01_223: 1.0
|
|
3376
|
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- !!python/object:python.hmmwriter.State
|
|
3377
|
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emissions:
|
|
3378
|
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probs:
|
|
3379
|
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A: 0.036749014910624996
|
|
3380
|
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C: 0.889752955268125
|
|
3381
|
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G: 0.036749014910624996
|
|
3382
|
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T: 0.036749014910624996
|
|
3383
|
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track: nukes
|
|
3384
|
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extras:
|
|
3385
|
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ambiguous_char: N
|
|
3386
|
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ambiguous_emission_prob: 0.25
|
|
3387
|
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germline: C
|
|
3388
|
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name: IGHV1-18_star_01_223
|
|
3389
|
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transitions:
|
|
3390
|
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IGHV1-18_star_01_224: 1.0
|
|
3391
|
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- !!python/object:python.hmmwriter.State
|
|
3392
|
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emissions:
|
|
3393
|
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probs:
|
|
3394
|
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A: 0.036749014910624996
|
|
3395
|
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C: 0.889752955268125
|
|
3396
|
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G: 0.036749014910624996
|
|
3397
|
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T: 0.036749014910624996
|
|
3398
|
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track: nukes
|
|
3399
|
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extras:
|
|
3400
|
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|
|
3401
|
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ambiguous_emission_prob: 0.25
|
|
3402
|
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germline: C
|
|
3403
|
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name: IGHV1-18_star_01_224
|
|
3404
|
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transitions:
|
|
3405
|
+
IGHV1-18_star_01_225: 1.0
|
|
3406
|
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- !!python/object:python.hmmwriter.State
|
|
3407
|
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emissions:
|
|
3408
|
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probs:
|
|
3409
|
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A: 0.889752955268125
|
|
3410
|
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C: 0.036749014910624996
|
|
3411
|
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G: 0.036749014910624996
|
|
3412
|
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T: 0.036749014910624996
|
|
3413
|
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track: nukes
|
|
3414
|
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extras:
|
|
3415
|
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|
|
3416
|
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ambiguous_emission_prob: 0.25
|
|
3417
|
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germline: A
|
|
3418
|
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name: IGHV1-18_star_01_225
|
|
3419
|
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transitions:
|
|
3420
|
+
IGHV1-18_star_01_226: 1.0
|
|
3421
|
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- !!python/object:python.hmmwriter.State
|
|
3422
|
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emissions:
|
|
3423
|
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probs:
|
|
3424
|
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A: 0.036749014910624996
|
|
3425
|
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C: 0.889752955268125
|
|
3426
|
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G: 0.036749014910624996
|
|
3427
|
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T: 0.036749014910624996
|
|
3428
|
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track: nukes
|
|
3429
|
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extras:
|
|
3430
|
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ambiguous_char: N
|
|
3431
|
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ambiguous_emission_prob: 0.25
|
|
3432
|
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germline: C
|
|
3433
|
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name: IGHV1-18_star_01_226
|
|
3434
|
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transitions:
|
|
3435
|
+
IGHV1-18_star_01_227: 1.0
|
|
3436
|
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- !!python/object:python.hmmwriter.State
|
|
3437
|
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emissions:
|
|
3438
|
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probs:
|
|
3439
|
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A: 0.036749014910624996
|
|
3440
|
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C: 0.036749014910624996
|
|
3441
|
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G: 0.889752955268125
|
|
3442
|
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T: 0.036749014910624996
|
|
3443
|
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track: nukes
|
|
3444
|
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extras:
|
|
3445
|
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ambiguous_char: N
|
|
3446
|
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ambiguous_emission_prob: 0.25
|
|
3447
|
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germline: G
|
|
3448
|
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name: IGHV1-18_star_01_227
|
|
3449
|
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transitions:
|
|
3450
|
+
IGHV1-18_star_01_228: 1.0
|
|
3451
|
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- !!python/object:python.hmmwriter.State
|
|
3452
|
+
emissions:
|
|
3453
|
+
probs:
|
|
3454
|
+
A: 0.889752955268125
|
|
3455
|
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C: 0.036749014910624996
|
|
3456
|
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G: 0.036749014910624996
|
|
3457
|
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T: 0.036749014910624996
|
|
3458
|
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track: nukes
|
|
3459
|
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extras:
|
|
3460
|
+
ambiguous_char: N
|
|
3461
|
+
ambiguous_emission_prob: 0.25
|
|
3462
|
+
germline: A
|
|
3463
|
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name: IGHV1-18_star_01_228
|
|
3464
|
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transitions:
|
|
3465
|
+
IGHV1-18_star_01_229: 1.0
|
|
3466
|
+
- !!python/object:python.hmmwriter.State
|
|
3467
|
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emissions:
|
|
3468
|
+
probs:
|
|
3469
|
+
A: 0.036749014910624996
|
|
3470
|
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C: 0.036749014910624996
|
|
3471
|
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G: 0.889752955268125
|
|
3472
|
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T: 0.036749014910624996
|
|
3473
|
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track: nukes
|
|
3474
|
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extras:
|
|
3475
|
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ambiguous_char: N
|
|
3476
|
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ambiguous_emission_prob: 0.25
|
|
3477
|
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germline: G
|
|
3478
|
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name: IGHV1-18_star_01_229
|
|
3479
|
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transitions:
|
|
3480
|
+
IGHV1-18_star_01_230: 1.0
|
|
3481
|
+
- !!python/object:python.hmmwriter.State
|
|
3482
|
+
emissions:
|
|
3483
|
+
probs:
|
|
3484
|
+
A: 0.036749014910624996
|
|
3485
|
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C: 0.889752955268125
|
|
3486
|
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G: 0.036749014910624996
|
|
3487
|
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T: 0.036749014910624996
|
|
3488
|
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track: nukes
|
|
3489
|
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extras:
|
|
3490
|
+
ambiguous_char: N
|
|
3491
|
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IGHV1-18_star_01_231: 1.0
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- !!python/object:python.hmmwriter.State
|
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|
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3505
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|
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|
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IGHV1-18_star_01_232: 1.0
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- !!python/object:python.hmmwriter.State
|
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|
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3513
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|
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|
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|
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|
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3525
|
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IGHV1-18_star_01_233: 1.0
|
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3526
|
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- !!python/object:python.hmmwriter.State
|
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|
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|
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|
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|
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IGHV1-18_star_01_234: 1.0
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3541
|
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- !!python/object:python.hmmwriter.State
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|
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3543
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|
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|
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|
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3555
|
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IGHV1-18_star_01_235: 1.0
|
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3556
|
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- !!python/object:python.hmmwriter.State
|
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3557
|
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|
|
3558
|
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|
3559
|
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|
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|
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|
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|
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|
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IGHV1-18_star_01_236: 1.0
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|
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- !!python/object:python.hmmwriter.State
|
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|
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|
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|
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|
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|
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|
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IGHV1-18_star_01_237: 1.0
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|
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- !!python/object:python.hmmwriter.State
|
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|
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3588
|
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|
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|
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|
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|
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|
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3600
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IGHV1-18_star_01_238: 1.0
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3601
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- !!python/object:python.hmmwriter.State
|
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3602
|
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3603
|
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3604
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3610
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|
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|
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|
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|
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3615
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IGHV1-18_star_01_239: 1.0
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|
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3617
|
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3618
|
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|
3619
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|
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|
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|
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|
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3627
|
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|
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|
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|
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|
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3630
|
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IGHV1-18_star_01_240: 1.0
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3631
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|
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3632
|
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|
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3634
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|
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|
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3640
|
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|
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|
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|
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|
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|
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|
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|
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3645
|
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IGHV1-18_star_01_241: 1.0
|
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3646
|
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- !!python/object:python.hmmwriter.State
|
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3647
|
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emissions:
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3648
|
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probs:
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|
3649
|
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|
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|
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|
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|
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|
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|
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|
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|
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3660
|
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|
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3661
|
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|
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3662
|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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IGHV1-18_star_01_243: 1.0
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|
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|
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3677
|
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3678
|
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|
3679
|
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A: 0.036749014910624996
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|
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|
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|
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T: 0.036749014910624996
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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IGHV1-18_star_01_244: 1.0
|
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3691
|
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- !!python/object:python.hmmwriter.State
|
|
3692
|
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|
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probs:
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|
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A: 0.889752955268125
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|
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C: 0.036749014910624996
|
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|
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|
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3700
|
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|
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3702
|
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|
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|
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|
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|
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3705
|
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IGHV1-18_star_01_245: 1.0
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3706
|
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- !!python/object:python.hmmwriter.State
|
|
3707
|
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emissions:
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|
3708
|
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probs:
|
|
3709
|
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A: 0.036749014910624996
|
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|
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|
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|
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|
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|
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|
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|
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|
|
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|
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|
|
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|
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|
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|
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IGHV1-18_star_01_246: 1.0
|
|
3721
|
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|
|
3722
|
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emissions:
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|
3723
|
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probs:
|
|
3724
|
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A: 0.036749014910624996
|
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|
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C: 0.889752955268125
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|
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3727
|
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T: 0.036749014910624996
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|
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|
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|
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|
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|
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|
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|
|
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|
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|
|
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|
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|
|
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|
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|
3735
|
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IGHV1-18_star_01_247: 1.0
|
|
3736
|
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- !!python/object:python.hmmwriter.State
|
|
3737
|
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emissions:
|
|
3738
|
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probs:
|
|
3739
|
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A: 0.036749014910624996
|
|
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|
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C: 0.036749014910624996
|
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|
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|
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3742
|
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T: 0.889752955268125
|
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|
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|
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|
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|
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|
|
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|
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|
|
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|
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|
|
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|
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|
|
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|
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|
|
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|
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IGHV1-18_star_01_248: 1.0
|
|
3751
|
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- !!python/object:python.hmmwriter.State
|
|
3752
|
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emissions:
|
|
3753
|
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probs:
|
|
3754
|
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A: 0.036749014910624996
|
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3755
|
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C: 0.036749014910624996
|
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3756
|
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G: 0.889752955268125
|
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3757
|
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T: 0.036749014910624996
|
|
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|
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|
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|
|
3760
|
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|
|
3761
|
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|
|
3762
|
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|
|
3763
|
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|
|
3764
|
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|
|
3765
|
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IGHV1-18_star_01_249: 1.0
|
|
3766
|
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- !!python/object:python.hmmwriter.State
|
|
3767
|
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emissions:
|
|
3768
|
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probs:
|
|
3769
|
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A: 0.889752955268125
|
|
3770
|
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C: 0.036749014910624996
|
|
3771
|
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G: 0.036749014910624996
|
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3772
|
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T: 0.036749014910624996
|
|
3773
|
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|
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3774
|
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|
|
3775
|
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|
|
3776
|
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|
|
3777
|
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|
|
3778
|
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|
|
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|
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transitions:
|
|
3780
|
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IGHV1-18_star_01_250: 1.0
|
|
3781
|
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- !!python/object:python.hmmwriter.State
|
|
3782
|
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emissions:
|
|
3783
|
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probs:
|
|
3784
|
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A: 0.036749014910624996
|
|
3785
|
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C: 0.036749014910624996
|
|
3786
|
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G: 0.889752955268125
|
|
3787
|
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T: 0.036749014910624996
|
|
3788
|
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|
|
3789
|
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|
|
3790
|
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|
|
3791
|
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|
|
3792
|
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|
|
3793
|
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|
|
3794
|
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transitions:
|
|
3795
|
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IGHV1-18_star_01_251: 1.0
|
|
3796
|
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- !!python/object:python.hmmwriter.State
|
|
3797
|
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emissions:
|
|
3798
|
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probs:
|
|
3799
|
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A: 0.036749014910624996
|
|
3800
|
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C: 0.036749014910624996
|
|
3801
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G: 0.889752955268125
|
|
3802
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|
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IGHV1-18_star_01_252: 1.0
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- !!python/object:python.hmmwriter.State
|
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|
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|
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|
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|
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|
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|
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|
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IGHV1-18_star_01_253: 1.0
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|
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- !!python/object:python.hmmwriter.State
|
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|
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|
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|
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|
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|
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|
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IGHV1-18_star_01_254: 1.0
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|
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- !!python/object:python.hmmwriter.State
|
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|
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|
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|
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|
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|
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IGHV1-18_star_01_255: 1.0
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3856
|
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- !!python/object:python.hmmwriter.State
|
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|
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|
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|
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|
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|
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|
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|
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IGHV1-18_star_01_256: 1.0
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3871
|
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- !!python/object:python.hmmwriter.State
|
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|
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|
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|
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IGHV1-18_star_01_257: 1.0
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- !!python/object:python.hmmwriter.State
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|
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|
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|
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3900
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IGHV1-18_star_01_258: 1.0
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- !!python/object:python.hmmwriter.State
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|
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|
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|
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|
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|
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3915
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IGHV1-18_star_01_259: 1.0
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|
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|
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IGHV1-18_star_01_260: 1.0
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|
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|
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|
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3945
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IGHV1-18_star_01_261: 1.0
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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3960
|
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IGHV1-18_star_01_262: 1.0
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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IGHV1-18_star_01_264: 1.0
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|
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- !!python/object:python.hmmwriter.State
|
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|
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|
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|
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|
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|
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4000
|
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|
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|
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|
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|
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|
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IGHV1-18_star_01_265: 1.0
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|
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- !!python/object:python.hmmwriter.State
|
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|
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emissions:
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4008
|
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probs:
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4009
|
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|
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|
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|
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|
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|
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|
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|
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|
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4020
|
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IGHV1-18_star_01_266: 1.0
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|
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4022
|
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4023
|
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|
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|
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|
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|
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|
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|
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4035
|
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IGHV1-18_star_01_267: 1.0
|
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|
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|
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4037
|
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emissions:
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4038
|
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probs:
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4039
|
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A: 0.036749014910624996
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
|
4052
|
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emissions:
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|
4053
|
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probs:
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|
4054
|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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IGHV1-18_star_01_269: 1.0
|
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4066
|
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|
|
4067
|
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emissions:
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4068
|
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probs:
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|
4069
|
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A: 0.036749014910624996
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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IGHV1-18_star_01_270: 1.0
|
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4081
|
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- !!python/object:python.hmmwriter.State
|
|
4082
|
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emissions:
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|
4083
|
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probs:
|
|
4084
|
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A: 0.889752955268125
|
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|
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|
|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
|
4095
|
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IGHV1-18_star_01_271: 1.0
|
|
4096
|
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- !!python/object:python.hmmwriter.State
|
|
4097
|
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emissions:
|
|
4098
|
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probs:
|
|
4099
|
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A: 0.036749014910624996
|
|
4100
|
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C: 0.889752955268125
|
|
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4102
|
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|
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|
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|
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|
4105
|
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|
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|
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|
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|
4110
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|
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|
|
4112
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emissions:
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|
4113
|
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probs:
|
|
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|
|
4425
|
+
ambiguous_char: N
|
|
4426
|
+
ambiguous_emission_prob: 0.25
|
|
4427
|
+
germline: G
|
|
4428
|
+
name: IGHV1-18_star_01_292
|
|
4429
|
+
transitions:
|
|
4430
|
+
IGHV1-18_star_01_293: 0.9333333333333333
|
|
4431
|
+
end: 0.06666666666666667
|
|
4432
|
+
- !!python/object:python.hmmwriter.State
|
|
4433
|
+
emissions:
|
|
4434
|
+
probs:
|
|
4435
|
+
A: 0.8897404662715497
|
|
4436
|
+
C: 0.03675317790948345
|
|
4437
|
+
G: 0.03675317790948345
|
|
4438
|
+
T: 0.03675317790948345
|
|
4439
|
+
track: nukes
|
|
4440
|
+
extras:
|
|
4441
|
+
ambiguous_char: N
|
|
4442
|
+
ambiguous_emission_prob: 0.25
|
|
4443
|
+
germline: A
|
|
4444
|
+
name: IGHV1-18_star_01_293
|
|
4445
|
+
transitions:
|
|
4446
|
+
IGHV1-18_star_01_294: 0.9333333333333333
|
|
4447
|
+
end: 0.06666666666666667
|
|
4448
|
+
- !!python/object:python.hmmwriter.State
|
|
4449
|
+
emissions:
|
|
4450
|
+
probs:
|
|
4451
|
+
A: 0.03675377262360609
|
|
4452
|
+
C: 0.03675377262360609
|
|
4453
|
+
G: 0.8897386821291817
|
|
4454
|
+
T: 0.03675377262360609
|
|
4455
|
+
track: nukes
|
|
4456
|
+
extras:
|
|
4457
|
+
ambiguous_char: N
|
|
4458
|
+
ambiguous_emission_prob: 0.25
|
|
4459
|
+
germline: G
|
|
4460
|
+
name: IGHV1-18_star_01_294
|
|
4461
|
+
transitions:
|
|
4462
|
+
IGHV1-18_star_01_295: 0.9333333333333333
|
|
4463
|
+
end: 0.06666666666666667
|
|
4464
|
+
- !!python/object:python.hmmwriter.State
|
|
4465
|
+
emissions:
|
|
4466
|
+
probs:
|
|
4467
|
+
A: 0.8897368979868138
|
|
4468
|
+
C: 0.03675436733772873
|
|
4469
|
+
G: 0.03675436733772873
|
|
4470
|
+
T: 0.03675436733772873
|
|
4471
|
+
track: nukes
|
|
4472
|
+
extras:
|
|
4473
|
+
ambiguous_char: N
|
|
4474
|
+
ambiguous_emission_prob: 0.25
|
|
4475
|
+
germline: A
|
|
4476
|
+
name: IGHV1-18_star_01_295
|
|
4477
|
+
transitions:
|
|
4478
|
+
end: 1.0
|
|
4479
|
+
tracks:
|
|
4480
|
+
nukes:
|
|
4481
|
+
- A
|
|
4482
|
+
- C
|
|
4483
|
+
- G
|
|
4484
|
+
- T
|