partis-bcr 1.0.11.post1.dev1__cp312-cp312-macosx_10_13_universal2.whl → 1.0.11.post1.dev7__cp312-cp312-macosx_10_13_universal2.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (645) hide show
  1. bin/partis +1 -1
  2. bin/partis-test.py +6 -0
  3. bin/partis.py +1 -1
  4. {partis_bcr-1.0.11.post1.dev1.data → partis_bcr-1.0.11.post1.dev7.data}/scripts/partis-test.py +6 -0
  5. {partis_bcr-1.0.11.post1.dev1.dist-info → partis_bcr-1.0.11.post1.dev7.dist-info}/METADATA +1 -1
  6. {partis_bcr-1.0.11.post1.dev1.dist-info → partis_bcr-1.0.11.post1.dev7.dist-info}/RECORD +645 -127
  7. python/recombinator.py +2 -0
  8. python/treegenerator.py +1 -1
  9. test/new-results/annotate-new-simu-annotation-performance/hmm/boundaries/d_3p_del.csv +7 -0
  10. test/new-results/annotate-new-simu-annotation-performance/hmm/boundaries/d_5p_del.csv +8 -0
  11. test/new-results/annotate-new-simu-annotation-performance/hmm/boundaries/dj_insertion.csv +8 -0
  12. test/new-results/annotate-new-simu-annotation-performance/hmm/boundaries/fv_insertion.csv +10 -0
  13. test/new-results/annotate-new-simu-annotation-performance/hmm/boundaries/j_3p_del.csv +4 -0
  14. test/new-results/annotate-new-simu-annotation-performance/hmm/boundaries/j_5p_del.csv +8 -0
  15. test/new-results/annotate-new-simu-annotation-performance/hmm/boundaries/jf_insertion.csv +4 -0
  16. test/new-results/annotate-new-simu-annotation-performance/hmm/boundaries/shm_indel_length.csv +8 -0
  17. test/new-results/annotate-new-simu-annotation-performance/hmm/boundaries/v_3p_del.csv +4 -0
  18. test/new-results/annotate-new-simu-annotation-performance/hmm/boundaries/v_5p_del.csv +4 -0
  19. test/new-results/annotate-new-simu-annotation-performance/hmm/boundaries/vd_insertion.csv +8 -0
  20. test/new-results/annotate-new-simu-annotation-performance/hmm/gene-call/d_allele_fraction_correct_vs_per_gene_support.csv +28 -0
  21. test/new-results/annotate-new-simu-annotation-performance/hmm/gene-call/d_fraction_correct_vs_mute_freq.csv +28 -0
  22. test/new-results/annotate-new-simu-annotation-performance/hmm/gene-call/d_gene.csv +5 -0
  23. test/new-results/annotate-new-simu-annotation-performance/hmm/gene-call/j_allele_fraction_correct_vs_per_gene_support.csv +28 -0
  24. test/new-results/annotate-new-simu-annotation-performance/hmm/gene-call/j_fraction_correct_vs_mute_freq.csv +28 -0
  25. test/new-results/annotate-new-simu-annotation-performance/hmm/gene-call/j_gene.csv +5 -0
  26. test/new-results/annotate-new-simu-annotation-performance/hmm/gene-call/v_allele_fraction_correct_vs_per_gene_support.csv +28 -0
  27. test/new-results/annotate-new-simu-annotation-performance/hmm/gene-call/v_fraction_correct_vs_mute_freq.csv +28 -0
  28. test/new-results/annotate-new-simu-annotation-performance/hmm/gene-call/v_gene.csv +5 -0
  29. test/new-results/annotate-new-simu-annotation-performance/hmm/mutation/cdr3_hamming_to_true_naive.csv +7 -0
  30. test/new-results/annotate-new-simu-annotation-performance/hmm/mutation/cdr3_muted_bases.csv +7 -0
  31. test/new-results/annotate-new-simu-annotation-performance/hmm/mutation/d_hamming_to_true_naive.csv +5 -0
  32. test/new-results/annotate-new-simu-annotation-performance/hmm/mutation/d_muted_bases.csv +6 -0
  33. test/new-results/annotate-new-simu-annotation-performance/hmm/mutation/hamming_to_true_naive.csv +7 -0
  34. test/new-results/annotate-new-simu-annotation-performance/hmm/mutation/j_hamming_to_true_naive.csv +4 -0
  35. test/new-results/annotate-new-simu-annotation-performance/hmm/mutation/j_muted_bases.csv +5 -0
  36. test/new-results/annotate-new-simu-annotation-performance/hmm/mutation/mute_freqs.csv +28 -0
  37. test/new-results/annotate-new-simu-annotation-performance/hmm/mutation/muted_bases.csv +7 -0
  38. test/new-results/annotate-new-simu-annotation-performance/hmm/mutation/v_hamming_to_true_naive.csv +4 -0
  39. test/new-results/annotate-new-simu-annotation-performance/hmm/mutation/v_muted_bases.csv +4 -0
  40. test/new-results/annotate-new-simu-annotation-performance/sw/boundaries/d_3p_del.csv +8 -0
  41. test/new-results/annotate-new-simu-annotation-performance/sw/boundaries/d_5p_del.csv +6 -0
  42. test/new-results/annotate-new-simu-annotation-performance/sw/boundaries/dj_insertion.csv +7 -0
  43. test/new-results/annotate-new-simu-annotation-performance/sw/boundaries/fv_insertion.csv +4 -0
  44. test/new-results/annotate-new-simu-annotation-performance/sw/boundaries/j_3p_del.csv +4 -0
  45. test/new-results/annotate-new-simu-annotation-performance/sw/boundaries/j_5p_del.csv +9 -0
  46. test/new-results/annotate-new-simu-annotation-performance/sw/boundaries/jf_insertion.csv +4 -0
  47. test/new-results/annotate-new-simu-annotation-performance/sw/boundaries/shm_indel_length.csv +8 -0
  48. test/new-results/annotate-new-simu-annotation-performance/sw/boundaries/v_3p_del.csv +4 -0
  49. test/new-results/annotate-new-simu-annotation-performance/sw/boundaries/v_5p_del.csv +4 -0
  50. test/new-results/annotate-new-simu-annotation-performance/sw/boundaries/vd_insertion.csv +6 -0
  51. test/new-results/annotate-new-simu-annotation-performance/sw/gene-call/d_fraction_correct_vs_mute_freq.csv +28 -0
  52. test/new-results/annotate-new-simu-annotation-performance/sw/gene-call/d_gene.csv +5 -0
  53. test/new-results/annotate-new-simu-annotation-performance/sw/gene-call/j_fraction_correct_vs_mute_freq.csv +28 -0
  54. test/new-results/annotate-new-simu-annotation-performance/sw/gene-call/j_gene.csv +5 -0
  55. test/new-results/annotate-new-simu-annotation-performance/sw/gene-call/v_fraction_correct_vs_mute_freq.csv +28 -0
  56. test/new-results/annotate-new-simu-annotation-performance/sw/gene-call/v_gene.csv +5 -0
  57. test/new-results/annotate-new-simu-annotation-performance/sw/mutation/cdr3_hamming_to_true_naive.csv +6 -0
  58. test/new-results/annotate-new-simu-annotation-performance/sw/mutation/cdr3_muted_bases.csv +7 -0
  59. test/new-results/annotate-new-simu-annotation-performance/sw/mutation/d_hamming_to_true_naive.csv +5 -0
  60. test/new-results/annotate-new-simu-annotation-performance/sw/mutation/d_muted_bases.csv +5 -0
  61. test/new-results/annotate-new-simu-annotation-performance/sw/mutation/hamming_to_true_naive.csv +6 -0
  62. test/new-results/annotate-new-simu-annotation-performance/sw/mutation/j_hamming_to_true_naive.csv +4 -0
  63. test/new-results/annotate-new-simu-annotation-performance/sw/mutation/j_muted_bases.csv +6 -0
  64. test/new-results/annotate-new-simu-annotation-performance/sw/mutation/mute_freqs.csv +28 -0
  65. test/new-results/annotate-new-simu-annotation-performance/sw/mutation/muted_bases.csv +7 -0
  66. test/new-results/annotate-new-simu-annotation-performance/sw/mutation/v_hamming_to_true_naive.csv +4 -0
  67. test/new-results/annotate-new-simu-annotation-performance/sw/mutation/v_muted_bases.csv +4 -0
  68. test/new-results/annotate-new-simu.yaml +1 -0
  69. test/new-results/cache-new-partition.csv +59 -0
  70. test/new-results/get-selection-metrics-new-simu.yaml +1 -0
  71. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/boundaries/d_3p_del.csv +7 -0
  72. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/boundaries/d_5p_del.csv +6 -0
  73. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/boundaries/dj_insertion.csv +8 -0
  74. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/boundaries/fv_insertion.csv +10 -0
  75. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/boundaries/j_3p_del.csv +4 -0
  76. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/boundaries/j_5p_del.csv +8 -0
  77. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/boundaries/jf_insertion.csv +4 -0
  78. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/boundaries/shm_indel_length.csv +8 -0
  79. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/boundaries/v_3p_del.csv +4 -0
  80. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/boundaries/v_5p_del.csv +4 -0
  81. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/boundaries/vd_insertion.csv +6 -0
  82. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/gene-call/d_allele_fraction_correct_vs_per_gene_support.csv +28 -0
  83. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/gene-call/d_fraction_correct_vs_mute_freq.csv +28 -0
  84. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/gene-call/d_gene.csv +5 -0
  85. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/gene-call/j_allele_fraction_correct_vs_per_gene_support.csv +28 -0
  86. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/gene-call/j_fraction_correct_vs_mute_freq.csv +28 -0
  87. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/gene-call/j_gene.csv +5 -0
  88. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/gene-call/v_allele_fraction_correct_vs_per_gene_support.csv +28 -0
  89. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/gene-call/v_fraction_correct_vs_mute_freq.csv +28 -0
  90. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/gene-call/v_gene.csv +5 -0
  91. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/mutation/cdr3_hamming_to_true_naive.csv +5 -0
  92. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/mutation/cdr3_muted_bases.csv +5 -0
  93. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/mutation/d_hamming_to_true_naive.csv +4 -0
  94. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/mutation/d_muted_bases.csv +4 -0
  95. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/mutation/hamming_to_true_naive.csv +5 -0
  96. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/mutation/j_hamming_to_true_naive.csv +4 -0
  97. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/mutation/j_muted_bases.csv +5 -0
  98. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/mutation/mute_freqs.csv +28 -0
  99. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/mutation/muted_bases.csv +5 -0
  100. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/mutation/v_hamming_to_true_naive.csv +4 -0
  101. test/new-results/multi-annotate-new-simu-annotation-performance/hmm/mutation/v_muted_bases.csv +4 -0
  102. test/new-results/multi-annotate-new-simu-annotation-performance/sw/boundaries/d_3p_del.csv +8 -0
  103. test/new-results/multi-annotate-new-simu-annotation-performance/sw/boundaries/d_5p_del.csv +6 -0
  104. test/new-results/multi-annotate-new-simu-annotation-performance/sw/boundaries/dj_insertion.csv +7 -0
  105. test/new-results/multi-annotate-new-simu-annotation-performance/sw/boundaries/fv_insertion.csv +4 -0
  106. test/new-results/multi-annotate-new-simu-annotation-performance/sw/boundaries/j_3p_del.csv +4 -0
  107. test/new-results/multi-annotate-new-simu-annotation-performance/sw/boundaries/j_5p_del.csv +9 -0
  108. test/new-results/multi-annotate-new-simu-annotation-performance/sw/boundaries/jf_insertion.csv +4 -0
  109. test/new-results/multi-annotate-new-simu-annotation-performance/sw/boundaries/shm_indel_length.csv +8 -0
  110. test/new-results/multi-annotate-new-simu-annotation-performance/sw/boundaries/v_3p_del.csv +4 -0
  111. test/new-results/multi-annotate-new-simu-annotation-performance/sw/boundaries/v_5p_del.csv +4 -0
  112. test/new-results/multi-annotate-new-simu-annotation-performance/sw/boundaries/vd_insertion.csv +6 -0
  113. test/new-results/multi-annotate-new-simu-annotation-performance/sw/gene-call/d_fraction_correct_vs_mute_freq.csv +28 -0
  114. test/new-results/multi-annotate-new-simu-annotation-performance/sw/gene-call/d_gene.csv +5 -0
  115. test/new-results/multi-annotate-new-simu-annotation-performance/sw/gene-call/j_fraction_correct_vs_mute_freq.csv +28 -0
  116. test/new-results/multi-annotate-new-simu-annotation-performance/sw/gene-call/j_gene.csv +5 -0
  117. test/new-results/multi-annotate-new-simu-annotation-performance/sw/gene-call/v_fraction_correct_vs_mute_freq.csv +28 -0
  118. test/new-results/multi-annotate-new-simu-annotation-performance/sw/gene-call/v_gene.csv +5 -0
  119. test/new-results/multi-annotate-new-simu-annotation-performance/sw/mutation/cdr3_hamming_to_true_naive.csv +6 -0
  120. test/new-results/multi-annotate-new-simu-annotation-performance/sw/mutation/cdr3_muted_bases.csv +7 -0
  121. test/new-results/multi-annotate-new-simu-annotation-performance/sw/mutation/d_hamming_to_true_naive.csv +5 -0
  122. test/new-results/multi-annotate-new-simu-annotation-performance/sw/mutation/d_muted_bases.csv +5 -0
  123. test/new-results/multi-annotate-new-simu-annotation-performance/sw/mutation/hamming_to_true_naive.csv +6 -0
  124. test/new-results/multi-annotate-new-simu-annotation-performance/sw/mutation/j_hamming_to_true_naive.csv +4 -0
  125. test/new-results/multi-annotate-new-simu-annotation-performance/sw/mutation/j_muted_bases.csv +6 -0
  126. test/new-results/multi-annotate-new-simu-annotation-performance/sw/mutation/mute_freqs.csv +28 -0
  127. test/new-results/multi-annotate-new-simu-annotation-performance/sw/mutation/muted_bases.csv +7 -0
  128. test/new-results/multi-annotate-new-simu-annotation-performance/sw/mutation/v_hamming_to_true_naive.csv +4 -0
  129. test/new-results/multi-annotate-new-simu-annotation-performance/sw/mutation/v_muted_bases.csv +4 -0
  130. test/new-results/multi-annotate-new-simu.yaml +1 -0
  131. test/new-results/partition-new-simu/fasttree/iclust-0/fasttree.out +1 -0
  132. test/new-results/partition-new-simu/fasttree/iclust-0/input-seqs.fa +24 -0
  133. test/new-results/partition-new-simu/fasttree/iclust-0/log +23 -0
  134. test/new-results/partition-new-simu/fasttree/iclust-1/fasttree.out +1 -0
  135. test/new-results/partition-new-simu/fasttree/iclust-1/input-seqs.fa +16 -0
  136. test/new-results/partition-new-simu/fasttree/iclust-1/log +23 -0
  137. test/new-results/partition-new-simu/fasttree/iclust-2/fasttree.out +1 -0
  138. test/new-results/partition-new-simu/fasttree/iclust-2/input-seqs.fa +16 -0
  139. test/new-results/partition-new-simu/fasttree/iclust-2/log +22 -0
  140. test/new-results/partition-new-simu-annotation-performance/hmm/boundaries/d_3p_del.csv +7 -0
  141. test/new-results/partition-new-simu-annotation-performance/hmm/boundaries/d_5p_del.csv +6 -0
  142. test/new-results/partition-new-simu-annotation-performance/hmm/boundaries/dj_insertion.csv +8 -0
  143. test/new-results/partition-new-simu-annotation-performance/hmm/boundaries/fv_insertion.csv +10 -0
  144. test/new-results/partition-new-simu-annotation-performance/hmm/boundaries/j_3p_del.csv +4 -0
  145. test/new-results/partition-new-simu-annotation-performance/hmm/boundaries/j_5p_del.csv +8 -0
  146. test/new-results/partition-new-simu-annotation-performance/hmm/boundaries/jf_insertion.csv +4 -0
  147. test/new-results/partition-new-simu-annotation-performance/hmm/boundaries/shm_indel_length.csv +8 -0
  148. test/new-results/partition-new-simu-annotation-performance/hmm/boundaries/v_3p_del.csv +4 -0
  149. test/new-results/partition-new-simu-annotation-performance/hmm/boundaries/v_5p_del.csv +4 -0
  150. test/new-results/partition-new-simu-annotation-performance/hmm/boundaries/vd_insertion.csv +6 -0
  151. test/new-results/partition-new-simu-annotation-performance/hmm/gene-call/d_allele_fraction_correct_vs_per_gene_support.csv +28 -0
  152. test/new-results/partition-new-simu-annotation-performance/hmm/gene-call/d_fraction_correct_vs_mute_freq.csv +28 -0
  153. test/new-results/partition-new-simu-annotation-performance/hmm/gene-call/d_gene.csv +5 -0
  154. test/new-results/partition-new-simu-annotation-performance/hmm/gene-call/j_allele_fraction_correct_vs_per_gene_support.csv +28 -0
  155. test/new-results/partition-new-simu-annotation-performance/hmm/gene-call/j_fraction_correct_vs_mute_freq.csv +28 -0
  156. test/new-results/partition-new-simu-annotation-performance/hmm/gene-call/j_gene.csv +5 -0
  157. test/new-results/partition-new-simu-annotation-performance/hmm/gene-call/v_allele_fraction_correct_vs_per_gene_support.csv +28 -0
  158. test/new-results/partition-new-simu-annotation-performance/hmm/gene-call/v_fraction_correct_vs_mute_freq.csv +28 -0
  159. test/new-results/partition-new-simu-annotation-performance/hmm/gene-call/v_gene.csv +5 -0
  160. test/new-results/partition-new-simu-annotation-performance/hmm/mutation/cdr3_hamming_to_true_naive.csv +5 -0
  161. test/new-results/partition-new-simu-annotation-performance/hmm/mutation/cdr3_muted_bases.csv +5 -0
  162. test/new-results/partition-new-simu-annotation-performance/hmm/mutation/d_hamming_to_true_naive.csv +4 -0
  163. test/new-results/partition-new-simu-annotation-performance/hmm/mutation/d_muted_bases.csv +4 -0
  164. test/new-results/partition-new-simu-annotation-performance/hmm/mutation/hamming_to_true_naive.csv +5 -0
  165. test/new-results/partition-new-simu-annotation-performance/hmm/mutation/j_hamming_to_true_naive.csv +4 -0
  166. test/new-results/partition-new-simu-annotation-performance/hmm/mutation/j_muted_bases.csv +5 -0
  167. test/new-results/partition-new-simu-annotation-performance/hmm/mutation/mute_freqs.csv +28 -0
  168. test/new-results/partition-new-simu-annotation-performance/hmm/mutation/muted_bases.csv +5 -0
  169. test/new-results/partition-new-simu-annotation-performance/hmm/mutation/v_hamming_to_true_naive.csv +4 -0
  170. test/new-results/partition-new-simu-annotation-performance/hmm/mutation/v_muted_bases.csv +4 -0
  171. test/new-results/partition-new-simu-annotation-performance/sw/boundaries/d_3p_del.csv +8 -0
  172. test/new-results/partition-new-simu-annotation-performance/sw/boundaries/d_5p_del.csv +6 -0
  173. test/new-results/partition-new-simu-annotation-performance/sw/boundaries/dj_insertion.csv +7 -0
  174. test/new-results/partition-new-simu-annotation-performance/sw/boundaries/fv_insertion.csv +4 -0
  175. test/new-results/partition-new-simu-annotation-performance/sw/boundaries/j_3p_del.csv +4 -0
  176. test/new-results/partition-new-simu-annotation-performance/sw/boundaries/j_5p_del.csv +9 -0
  177. test/new-results/partition-new-simu-annotation-performance/sw/boundaries/jf_insertion.csv +4 -0
  178. test/new-results/partition-new-simu-annotation-performance/sw/boundaries/shm_indel_length.csv +8 -0
  179. test/new-results/partition-new-simu-annotation-performance/sw/boundaries/v_3p_del.csv +4 -0
  180. test/new-results/partition-new-simu-annotation-performance/sw/boundaries/v_5p_del.csv +4 -0
  181. test/new-results/partition-new-simu-annotation-performance/sw/boundaries/vd_insertion.csv +6 -0
  182. test/new-results/partition-new-simu-annotation-performance/sw/gene-call/d_fraction_correct_vs_mute_freq.csv +28 -0
  183. test/new-results/partition-new-simu-annotation-performance/sw/gene-call/d_gene.csv +5 -0
  184. test/new-results/partition-new-simu-annotation-performance/sw/gene-call/j_fraction_correct_vs_mute_freq.csv +28 -0
  185. test/new-results/partition-new-simu-annotation-performance/sw/gene-call/j_gene.csv +5 -0
  186. test/new-results/partition-new-simu-annotation-performance/sw/gene-call/v_fraction_correct_vs_mute_freq.csv +28 -0
  187. test/new-results/partition-new-simu-annotation-performance/sw/gene-call/v_gene.csv +5 -0
  188. test/new-results/partition-new-simu-annotation-performance/sw/mutation/cdr3_hamming_to_true_naive.csv +6 -0
  189. test/new-results/partition-new-simu-annotation-performance/sw/mutation/cdr3_muted_bases.csv +7 -0
  190. test/new-results/partition-new-simu-annotation-performance/sw/mutation/d_hamming_to_true_naive.csv +5 -0
  191. test/new-results/partition-new-simu-annotation-performance/sw/mutation/d_muted_bases.csv +5 -0
  192. test/new-results/partition-new-simu-annotation-performance/sw/mutation/hamming_to_true_naive.csv +6 -0
  193. test/new-results/partition-new-simu-annotation-performance/sw/mutation/j_hamming_to_true_naive.csv +4 -0
  194. test/new-results/partition-new-simu-annotation-performance/sw/mutation/j_muted_bases.csv +6 -0
  195. test/new-results/partition-new-simu-annotation-performance/sw/mutation/mute_freqs.csv +28 -0
  196. test/new-results/partition-new-simu-annotation-performance/sw/mutation/muted_bases.csv +7 -0
  197. test/new-results/partition-new-simu-annotation-performance/sw/mutation/v_hamming_to_true_naive.csv +4 -0
  198. test/new-results/partition-new-simu-annotation-performance/sw/mutation/v_muted_bases.csv +4 -0
  199. test/new-results/partition-new-simu.yaml +1 -0
  200. test/new-results/run-times.csv +9 -0
  201. test/new-results/seed-partition-new-simu.yaml +1 -0
  202. test/new-results/test/parameters/data/hmm/all-mean-mute-freqs.csv +43 -0
  203. test/new-results/test/parameters/data/hmm/all-mean-n-muted.csv +155 -0
  204. test/new-results/test/parameters/data/hmm/all-probs.csv +44 -0
  205. test/new-results/test/parameters/data/hmm/cluster_size.csv +2 -0
  206. test/new-results/test/parameters/data/hmm/d-mean-mute-freqs.csv +43 -0
  207. test/new-results/test/parameters/data/hmm/d-mean-n-muted.csv +14 -0
  208. test/new-results/test/parameters/data/hmm/d_gene-d_3p_del-probs.csv +34 -0
  209. test/new-results/test/parameters/data/hmm/d_gene-d_5p_del-probs.csv +42 -0
  210. test/new-results/test/parameters/data/hmm/d_gene-probs.csv +20 -0
  211. test/new-results/test/parameters/data/hmm/d_gene-vd_insertion-probs.csv +39 -0
  212. test/new-results/test/parameters/data/hmm/dj_insertion_content.csv +5 -0
  213. test/new-results/test/parameters/data/hmm/fv_insertion-probs.csv +4 -0
  214. test/new-results/test/parameters/data/hmm/germline-sets/igh/extras.csv +23 -0
  215. test/new-results/test/parameters/data/hmm/germline-sets/igh/ighd.fasta +38 -0
  216. test/new-results/test/parameters/data/hmm/germline-sets/igh/ighj.fasta +14 -0
  217. test/new-results/test/parameters/data/hmm/germline-sets/igh/ighv.fasta +30 -0
  218. test/new-results/test/parameters/data/hmm/hmms/IGHD1-20_star_01.yaml +449 -0
  219. test/new-results/test/parameters/data/hmm/hmms/IGHD1-26_star_01.yaml +512 -0
  220. test/new-results/test/parameters/data/hmm/hmms/IGHD2-15_star_01.yaml +743 -0
  221. test/new-results/test/parameters/data/hmm/hmms/IGHD2-21_star_01.yaml +681 -0
  222. test/new-results/test/parameters/data/hmm/hmms/IGHD2-21_star_02.yaml +681 -0
  223. test/new-results/test/parameters/data/hmm/hmms/IGHD2-2_star_01.yaml +743 -0
  224. test/new-results/test/parameters/data/hmm/hmms/IGHD2-8_star_01.yaml +744 -0
  225. test/new-results/test/parameters/data/hmm/hmms/IGHD2-8_star_02.yaml +743 -0
  226. test/new-results/test/parameters/data/hmm/hmms/IGHD3-10_star_01.yaml +743 -0
  227. test/new-results/test/parameters/data/hmm/hmms/IGHD3-10_star_03.yaml +744 -0
  228. test/new-results/test/parameters/data/hmm/hmms/IGHD3-16_star_02.yaml +870 -0
  229. test/new-results/test/parameters/data/hmm/hmms/IGHD3-22_star_01.yaml +743 -0
  230. test/new-results/test/parameters/data/hmm/hmms/IGHD3-3_star_01.yaml +744 -0
  231. test/new-results/test/parameters/data/hmm/hmms/IGHD4-17_star_01.yaml +429 -0
  232. test/new-results/test/parameters/data/hmm/hmms/IGHD4-4_star_01.yaml +428 -0
  233. test/new-results/test/parameters/data/hmm/hmms/IGHD5-5_star_01.yaml +513 -0
  234. test/new-results/test/parameters/data/hmm/hmms/IGHD6-13_star_01.yaml +533 -0
  235. test/new-results/test/parameters/data/hmm/hmms/IGHD6-19_star_01.yaml +534 -0
  236. test/new-results/test/parameters/data/hmm/hmms/IGHD6-6_star_01.yaml +470 -0
  237. test/new-results/test/parameters/data/hmm/hmms/IGHJ1_star_01.yaml +986 -0
  238. test/new-results/test/parameters/data/hmm/hmms/IGHJ2_star_01.yaml +1006 -0
  239. test/new-results/test/parameters/data/hmm/hmms/IGHJ3_star_02.yaml +946 -0
  240. test/new-results/test/parameters/data/hmm/hmms/IGHJ4_star_02.yaml +906 -0
  241. test/new-results/test/parameters/data/hmm/hmms/IGHJ5_star_02.yaml +966 -0
  242. test/new-results/test/parameters/data/hmm/hmms/IGHJ6_star_02.yaml +1206 -0
  243. test/new-results/test/parameters/data/hmm/hmms/IGHJ6_star_03.yaml +1206 -0
  244. test/new-results/test/parameters/data/hmm/hmms/IGHV1-18_star_01.yaml +4484 -0
  245. test/new-results/test/parameters/data/hmm/hmms/IGHV1-2_star_02.yaml +4484 -0
  246. test/new-results/test/parameters/data/hmm/hmms/IGHV2-5_star_02.yaml +4560 -0
  247. test/new-results/test/parameters/data/hmm/hmms/IGHV2-70D_star_04.yaml +4561 -0
  248. test/new-results/test/parameters/data/hmm/hmms/IGHV3-11_star_04.yaml +4484 -0
  249. test/new-results/test/parameters/data/hmm/hmms/IGHV3-23_star_01.yaml +4484 -0
  250. test/new-results/test/parameters/data/hmm/hmms/IGHV3-66_star_02.yaml +4439 -0
  251. test/new-results/test/parameters/data/hmm/hmms/IGHV3-69-1_star_02.yaml +4439 -0
  252. test/new-results/test/parameters/data/hmm/hmms/IGHV3-7_star_05.yaml +4484 -0
  253. test/new-results/test/parameters/data/hmm/hmms/IGHV3-9_star_02.yaml +4516 -0
  254. test/new-results/test/parameters/data/hmm/hmms/IGHV4-34_star_01.yaml +4439 -0
  255. test/new-results/test/parameters/data/hmm/hmms/IGHV4-39_star_09.yaml +4529 -0
  256. test/new-results/test/parameters/data/hmm/hmms/IGHV4-4_star_09.yaml +4438 -0
  257. test/new-results/test/parameters/data/hmm/hmms/IGHV4-61_star_01.yaml +4529 -0
  258. test/new-results/test/parameters/data/hmm/hmms/IGHV5-51_star_01.yaml +4484 -0
  259. test/new-results/test/parameters/data/hmm/j-mean-mute-freqs.csv +43 -0
  260. test/new-results/test/parameters/data/hmm/j-mean-n-muted.csv +25 -0
  261. test/new-results/test/parameters/data/hmm/j_gene-dj_insertion-probs.csv +31 -0
  262. test/new-results/test/parameters/data/hmm/j_gene-j_3p_del-probs.csv +8 -0
  263. test/new-results/test/parameters/data/hmm/j_gene-j_5p_del-probs.csv +31 -0
  264. test/new-results/test/parameters/data/hmm/j_gene-probs.csv +8 -0
  265. test/new-results/test/parameters/data/hmm/jf_insertion-probs.csv +3 -0
  266. test/new-results/test/parameters/data/hmm/mute-freqs/IGHD1-20_star_01.csv +8 -0
  267. test/new-results/test/parameters/data/hmm/mute-freqs/IGHD1-26_star_01.csv +8 -0
  268. test/new-results/test/parameters/data/hmm/mute-freqs/IGHD2-15_star_01.csv +32 -0
  269. test/new-results/test/parameters/data/hmm/mute-freqs/IGHD2-21_star_01.csv +17 -0
  270. test/new-results/test/parameters/data/hmm/mute-freqs/IGHD2-21_star_02.csv +29 -0
  271. test/new-results/test/parameters/data/hmm/mute-freqs/IGHD2-2_star_01.csv +10 -0
  272. test/new-results/test/parameters/data/hmm/mute-freqs/IGHD2-8_star_01.csv +32 -0
  273. test/new-results/test/parameters/data/hmm/mute-freqs/IGHD2-8_star_02.csv +9 -0
  274. test/new-results/test/parameters/data/hmm/mute-freqs/IGHD3-10_star_01.csv +27 -0
  275. test/new-results/test/parameters/data/hmm/mute-freqs/IGHD3-10_star_03.csv +14 -0
  276. test/new-results/test/parameters/data/hmm/mute-freqs/IGHD3-16_star_02.csv +35 -0
  277. test/new-results/test/parameters/data/hmm/mute-freqs/IGHD3-22_star_01.csv +32 -0
  278. test/new-results/test/parameters/data/hmm/mute-freqs/IGHD3-3_star_01.csv +21 -0
  279. test/new-results/test/parameters/data/hmm/mute-freqs/IGHD4-17_star_01.csv +12 -0
  280. test/new-results/test/parameters/data/hmm/mute-freqs/IGHD4-4_star_01.csv +12 -0
  281. test/new-results/test/parameters/data/hmm/mute-freqs/IGHD5-5_star_01.csv +13 -0
  282. test/new-results/test/parameters/data/hmm/mute-freqs/IGHD6-13_star_01.csv +22 -0
  283. test/new-results/test/parameters/data/hmm/mute-freqs/IGHD6-19_star_01.csv +22 -0
  284. test/new-results/test/parameters/data/hmm/mute-freqs/IGHD6-6_star_01.csv +19 -0
  285. test/new-results/test/parameters/data/hmm/mute-freqs/IGHJ1_star_01.csv +52 -0
  286. test/new-results/test/parameters/data/hmm/mute-freqs/IGHJ2_star_01.csv +54 -0
  287. test/new-results/test/parameters/data/hmm/mute-freqs/IGHJ3_star_02.csv +51 -0
  288. test/new-results/test/parameters/data/hmm/mute-freqs/IGHJ4_star_02.csv +49 -0
  289. test/new-results/test/parameters/data/hmm/mute-freqs/IGHJ5_star_02.csv +50 -0
  290. test/new-results/test/parameters/data/hmm/mute-freqs/IGHJ6_star_02.csv +33 -0
  291. test/new-results/test/parameters/data/hmm/mute-freqs/IGHJ6_star_03.csv +40 -0
  292. test/new-results/test/parameters/data/hmm/mute-freqs/IGHV1-18_star_01.csv +297 -0
  293. test/new-results/test/parameters/data/hmm/mute-freqs/IGHV1-2_star_02.csv +296 -0
  294. test/new-results/test/parameters/data/hmm/mute-freqs/IGHV2-5_star_02.csv +66 -0
  295. test/new-results/test/parameters/data/hmm/mute-freqs/IGHV2-70D_star_04.csv +89 -0
  296. test/new-results/test/parameters/data/hmm/mute-freqs/IGHV3-11_star_04.csv +73 -0
  297. test/new-results/test/parameters/data/hmm/mute-freqs/IGHV3-23_star_01.csv +297 -0
  298. test/new-results/test/parameters/data/hmm/mute-freqs/IGHV3-66_star_02.csv +294 -0
  299. test/new-results/test/parameters/data/hmm/mute-freqs/IGHV3-69-1_star_02.csv +38 -0
  300. test/new-results/test/parameters/data/hmm/mute-freqs/IGHV3-7_star_05.csv +70 -0
  301. test/new-results/test/parameters/data/hmm/mute-freqs/IGHV3-9_star_02.csv +40 -0
  302. test/new-results/test/parameters/data/hmm/mute-freqs/IGHV4-34_star_01.csv +40 -0
  303. test/new-results/test/parameters/data/hmm/mute-freqs/IGHV4-39_star_09.csv +40 -0
  304. test/new-results/test/parameters/data/hmm/mute-freqs/IGHV4-4_star_09.csv +59 -0
  305. test/new-results/test/parameters/data/hmm/mute-freqs/IGHV4-61_star_01.csv +300 -0
  306. test/new-results/test/parameters/data/hmm/mute-freqs/IGHV5-51_star_01.csv +296 -0
  307. test/new-results/test/parameters/data/hmm/seq_content.csv +5 -0
  308. test/new-results/test/parameters/data/hmm/v-mean-mute-freqs.csv +43 -0
  309. test/new-results/test/parameters/data/hmm/v-mean-n-muted.csv +122 -0
  310. test/new-results/test/parameters/data/hmm/v_gene-probs.csv +16 -0
  311. test/new-results/test/parameters/data/hmm/v_gene-v_3p_del-probs.csv +24 -0
  312. test/new-results/test/parameters/data/hmm/v_gene-v_5p_del-probs.csv +16 -0
  313. test/new-results/test/parameters/data/hmm/vd_insertion_content.csv +5 -0
  314. test/new-results/test/parameters/data/sw/all-mean-mute-freqs.csv +43 -0
  315. test/new-results/test/parameters/data/sw/all-mean-n-muted.csv +155 -0
  316. test/new-results/test/parameters/data/sw/all-probs.csv +44 -0
  317. test/new-results/test/parameters/data/sw/cluster_size.csv +2 -0
  318. test/new-results/test/parameters/data/sw/d-mean-mute-freqs.csv +43 -0
  319. test/new-results/test/parameters/data/sw/d-mean-n-muted.csv +14 -0
  320. test/new-results/test/parameters/data/sw/d_gene-d_3p_del-probs.csv +40 -0
  321. test/new-results/test/parameters/data/sw/d_gene-d_5p_del-probs.csv +42 -0
  322. test/new-results/test/parameters/data/sw/d_gene-probs.csv +23 -0
  323. test/new-results/test/parameters/data/sw/d_gene-vd_insertion-probs.csv +40 -0
  324. test/new-results/test/parameters/data/sw/dj_insertion_content.csv +5 -0
  325. test/new-results/test/parameters/data/sw/fv_insertion-probs.csv +3 -0
  326. test/new-results/test/parameters/data/sw/germline-sets/igh/extras.csv +26 -0
  327. test/new-results/test/parameters/data/sw/germline-sets/igh/ighd.fasta +44 -0
  328. test/new-results/test/parameters/data/sw/germline-sets/igh/ighj.fasta +14 -0
  329. test/new-results/test/parameters/data/sw/germline-sets/igh/ighv.fasta +36 -0
  330. test/new-results/test/parameters/data/sw/hmms/IGHD1-1_star_01.yaml +450 -0
  331. test/new-results/test/parameters/data/sw/hmms/IGHD1-20_star_01.yaml +449 -0
  332. test/new-results/test/parameters/data/sw/hmms/IGHD1-26_star_01.yaml +512 -0
  333. test/new-results/test/parameters/data/sw/hmms/IGHD2-15_star_01.yaml +744 -0
  334. test/new-results/test/parameters/data/sw/hmms/IGHD2-21_star_01.yaml +681 -0
  335. test/new-results/test/parameters/data/sw/hmms/IGHD2-21_star_02.yaml +681 -0
  336. test/new-results/test/parameters/data/sw/hmms/IGHD2-2_star_01.yaml +743 -0
  337. test/new-results/test/parameters/data/sw/hmms/IGHD2-8_star_01.yaml +744 -0
  338. test/new-results/test/parameters/data/sw/hmms/IGHD2-8_star_02.yaml +743 -0
  339. test/new-results/test/parameters/data/sw/hmms/IGHD3-10_star_01.yaml +743 -0
  340. test/new-results/test/parameters/data/sw/hmms/IGHD3-10_star_03.yaml +744 -0
  341. test/new-results/test/parameters/data/sw/hmms/IGHD3-16_star_02.yaml +869 -0
  342. test/new-results/test/parameters/data/sw/hmms/IGHD3-16_star_03.yaml +869 -0
  343. test/new-results/test/parameters/data/sw/hmms/IGHD3-22_star_01.yaml +743 -0
  344. test/new-results/test/parameters/data/sw/hmms/IGHD3-3_star_01.yaml +744 -0
  345. test/new-results/test/parameters/data/sw/hmms/IGHD4-17_star_01.yaml +429 -0
  346. test/new-results/test/parameters/data/sw/hmms/IGHD4-4_star_01.yaml +428 -0
  347. test/new-results/test/parameters/data/sw/hmms/IGHD5-5_star_01.yaml +513 -0
  348. test/new-results/test/parameters/data/sw/hmms/IGHD6-13_star_01.yaml +533 -0
  349. test/new-results/test/parameters/data/sw/hmms/IGHD6-19_star_01.yaml +533 -0
  350. test/new-results/test/parameters/data/sw/hmms/IGHD6-25_star_01.yaml +470 -0
  351. test/new-results/test/parameters/data/sw/hmms/IGHD6-6_star_01.yaml +470 -0
  352. test/new-results/test/parameters/data/sw/hmms/IGHJ1_star_01.yaml +986 -0
  353. test/new-results/test/parameters/data/sw/hmms/IGHJ2_star_01.yaml +1006 -0
  354. test/new-results/test/parameters/data/sw/hmms/IGHJ3_star_02.yaml +946 -0
  355. test/new-results/test/parameters/data/sw/hmms/IGHJ4_star_02.yaml +906 -0
  356. test/new-results/test/parameters/data/sw/hmms/IGHJ5_star_02.yaml +966 -0
  357. test/new-results/test/parameters/data/sw/hmms/IGHJ6_star_02.yaml +1206 -0
  358. test/new-results/test/parameters/data/sw/hmms/IGHJ6_star_03.yaml +1206 -0
  359. test/new-results/test/parameters/data/sw/hmms/IGHV1-18_star_01.yaml +4484 -0
  360. test/new-results/test/parameters/data/sw/hmms/IGHV1-2_star_02.yaml +4484 -0
  361. test/new-results/test/parameters/data/sw/hmms/IGHV2-5_star_02.yaml +4560 -0
  362. test/new-results/test/parameters/data/sw/hmms/IGHV2-70D_star_04.yaml +4561 -0
  363. test/new-results/test/parameters/data/sw/hmms/IGHV3-11_star_04.yaml +4484 -0
  364. test/new-results/test/parameters/data/sw/hmms/IGHV3-23_star_01.yaml +4484 -0
  365. test/new-results/test/parameters/data/sw/hmms/IGHV3-23_star_03.yaml +4484 -0
  366. test/new-results/test/parameters/data/sw/hmms/IGHV3-30_star_04.yaml +4484 -0
  367. test/new-results/test/parameters/data/sw/hmms/IGHV3-48_star_03.yaml +4484 -0
  368. test/new-results/test/parameters/data/sw/hmms/IGHV3-66_star_02.yaml +4439 -0
  369. test/new-results/test/parameters/data/sw/hmms/IGHV3-69-1_star_02.yaml +4439 -0
  370. test/new-results/test/parameters/data/sw/hmms/IGHV3-7_star_05.yaml +4484 -0
  371. test/new-results/test/parameters/data/sw/hmms/IGHV3-9_star_02.yaml +4516 -0
  372. test/new-results/test/parameters/data/sw/hmms/IGHV4-34_star_01.yaml +4439 -0
  373. test/new-results/test/parameters/data/sw/hmms/IGHV4-39_star_09.yaml +4529 -0
  374. test/new-results/test/parameters/data/sw/hmms/IGHV4-4_star_09.yaml +4438 -0
  375. test/new-results/test/parameters/data/sw/hmms/IGHV4-61_star_01.yaml +4529 -0
  376. test/new-results/test/parameters/data/sw/hmms/IGHV5-51_star_01.yaml +4484 -0
  377. test/new-results/test/parameters/data/sw/j-mean-mute-freqs.csv +43 -0
  378. test/new-results/test/parameters/data/sw/j-mean-n-muted.csv +25 -0
  379. test/new-results/test/parameters/data/sw/j_gene-dj_insertion-probs.csv +32 -0
  380. test/new-results/test/parameters/data/sw/j_gene-j_3p_del-probs.csv +11 -0
  381. test/new-results/test/parameters/data/sw/j_gene-j_5p_del-probs.csv +31 -0
  382. test/new-results/test/parameters/data/sw/j_gene-probs.csv +8 -0
  383. test/new-results/test/parameters/data/sw/jf_insertion-probs.csv +3 -0
  384. test/new-results/test/parameters/data/sw/mute-freqs/IGHD1-1_star_01.csv +4 -0
  385. test/new-results/test/parameters/data/sw/mute-freqs/IGHD1-20_star_01.csv +8 -0
  386. test/new-results/test/parameters/data/sw/mute-freqs/IGHD1-26_star_01.csv +8 -0
  387. test/new-results/test/parameters/data/sw/mute-freqs/IGHD2-15_star_01.csv +32 -0
  388. test/new-results/test/parameters/data/sw/mute-freqs/IGHD2-21_star_01.csv +28 -0
  389. test/new-results/test/parameters/data/sw/mute-freqs/IGHD2-21_star_02.csv +27 -0
  390. test/new-results/test/parameters/data/sw/mute-freqs/IGHD2-2_star_01.csv +27 -0
  391. test/new-results/test/parameters/data/sw/mute-freqs/IGHD2-8_star_01.csv +32 -0
  392. test/new-results/test/parameters/data/sw/mute-freqs/IGHD2-8_star_02.csv +12 -0
  393. test/new-results/test/parameters/data/sw/mute-freqs/IGHD3-10_star_01.csv +29 -0
  394. test/new-results/test/parameters/data/sw/mute-freqs/IGHD3-10_star_03.csv +14 -0
  395. test/new-results/test/parameters/data/sw/mute-freqs/IGHD3-16_star_02.csv +34 -0
  396. test/new-results/test/parameters/data/sw/mute-freqs/IGHD3-16_star_03.csv +20 -0
  397. test/new-results/test/parameters/data/sw/mute-freqs/IGHD3-22_star_01.csv +30 -0
  398. test/new-results/test/parameters/data/sw/mute-freqs/IGHD3-3_star_01.csv +21 -0
  399. test/new-results/test/parameters/data/sw/mute-freqs/IGHD4-17_star_01.csv +12 -0
  400. test/new-results/test/parameters/data/sw/mute-freqs/IGHD4-4_star_01.csv +9 -0
  401. test/new-results/test/parameters/data/sw/mute-freqs/IGHD5-5_star_01.csv +9 -0
  402. test/new-results/test/parameters/data/sw/mute-freqs/IGHD6-13_star_01.csv +20 -0
  403. test/new-results/test/parameters/data/sw/mute-freqs/IGHD6-19_star_01.csv +21 -0
  404. test/new-results/test/parameters/data/sw/mute-freqs/IGHD6-25_star_01.csv +12 -0
  405. test/new-results/test/parameters/data/sw/mute-freqs/IGHD6-6_star_01.csv +19 -0
  406. test/new-results/test/parameters/data/sw/mute-freqs/IGHJ1_star_01.csv +52 -0
  407. test/new-results/test/parameters/data/sw/mute-freqs/IGHJ2_star_01.csv +54 -0
  408. test/new-results/test/parameters/data/sw/mute-freqs/IGHJ3_star_02.csv +51 -0
  409. test/new-results/test/parameters/data/sw/mute-freqs/IGHJ4_star_02.csv +49 -0
  410. test/new-results/test/parameters/data/sw/mute-freqs/IGHJ5_star_02.csv +51 -0
  411. test/new-results/test/parameters/data/sw/mute-freqs/IGHJ6_star_02.csv +33 -0
  412. test/new-results/test/parameters/data/sw/mute-freqs/IGHJ6_star_03.csv +40 -0
  413. test/new-results/test/parameters/data/sw/mute-freqs/IGHV1-18_star_01.csv +297 -0
  414. test/new-results/test/parameters/data/sw/mute-freqs/IGHV1-2_star_02.csv +296 -0
  415. test/new-results/test/parameters/data/sw/mute-freqs/IGHV2-5_star_02.csv +66 -0
  416. test/new-results/test/parameters/data/sw/mute-freqs/IGHV2-70D_star_04.csv +89 -0
  417. test/new-results/test/parameters/data/sw/mute-freqs/IGHV3-11_star_04.csv +73 -0
  418. test/new-results/test/parameters/data/sw/mute-freqs/IGHV3-23_star_01.csv +297 -0
  419. test/new-results/test/parameters/data/sw/mute-freqs/IGHV3-23_star_03.csv +32 -0
  420. test/new-results/test/parameters/data/sw/mute-freqs/IGHV3-30_star_04.csv +38 -0
  421. test/new-results/test/parameters/data/sw/mute-freqs/IGHV3-48_star_03.csv +38 -0
  422. test/new-results/test/parameters/data/sw/mute-freqs/IGHV3-66_star_02.csv +292 -0
  423. test/new-results/test/parameters/data/sw/mute-freqs/IGHV3-69-1_star_02.csv +38 -0
  424. test/new-results/test/parameters/data/sw/mute-freqs/IGHV3-7_star_05.csv +70 -0
  425. test/new-results/test/parameters/data/sw/mute-freqs/IGHV3-9_star_02.csv +40 -0
  426. test/new-results/test/parameters/data/sw/mute-freqs/IGHV4-34_star_01.csv +40 -0
  427. test/new-results/test/parameters/data/sw/mute-freqs/IGHV4-39_star_09.csv +40 -0
  428. test/new-results/test/parameters/data/sw/mute-freqs/IGHV4-4_star_09.csv +59 -0
  429. test/new-results/test/parameters/data/sw/mute-freqs/IGHV4-61_star_01.csv +300 -0
  430. test/new-results/test/parameters/data/sw/mute-freqs/IGHV5-51_star_01.csv +296 -0
  431. test/new-results/test/parameters/data/sw/seq_content.csv +5 -0
  432. test/new-results/test/parameters/data/sw/v-mean-mute-freqs.csv +43 -0
  433. test/new-results/test/parameters/data/sw/v-mean-n-muted.csv +122 -0
  434. test/new-results/test/parameters/data/sw/v_gene-probs.csv +19 -0
  435. test/new-results/test/parameters/data/sw/v_gene-v_3p_del-probs.csv +25 -0
  436. test/new-results/test/parameters/data/sw/v_gene-v_5p_del-probs.csv +29 -0
  437. test/new-results/test/parameters/data/sw/vd_insertion_content.csv +5 -0
  438. test/new-results/test/parameters/data/sw-cache.yaml +1 -0
  439. test/new-results/test/parameters/simu/hmm/all-mean-mute-freqs.csv +3 -3
  440. test/new-results/test/parameters/simu/hmm/all-mean-n-muted.csv +11 -11
  441. test/new-results/test/parameters/simu/hmm/all-probs.csv +13 -3
  442. test/new-results/test/parameters/simu/hmm/cluster_size.csv +1 -1
  443. test/new-results/test/parameters/simu/hmm/d-mean-mute-freqs.csv +6 -6
  444. test/new-results/test/parameters/simu/hmm/d-mean-n-muted.csv +3 -3
  445. test/new-results/test/parameters/simu/hmm/d_gene-d_3p_del-probs.csv +6 -1
  446. test/new-results/test/parameters/simu/hmm/d_gene-d_5p_del-probs.csv +9 -2
  447. test/new-results/test/parameters/simu/hmm/d_gene-probs.csv +5 -1
  448. test/new-results/test/parameters/simu/hmm/d_gene-vd_insertion-probs.csv +10 -2
  449. test/new-results/test/parameters/simu/hmm/dj_insertion_content.csv +4 -4
  450. test/new-results/test/parameters/simu/hmm/fv_insertion-probs.csv +3 -2
  451. test/new-results/test/parameters/simu/hmm/germline-sets/igh/extras.csv +6 -0
  452. test/new-results/test/parameters/simu/hmm/germline-sets/igh/ighd.fasta +8 -0
  453. test/new-results/test/parameters/simu/hmm/germline-sets/igh/ighj.fasta +2 -0
  454. test/new-results/test/parameters/simu/hmm/germline-sets/igh/ighv.fasta +10 -0
  455. test/new-results/test/parameters/simu/hmm/hmms/IGHD1-20_star_01.yaml +449 -0
  456. test/new-results/test/parameters/simu/hmm/hmms/IGHD3-16_star_02.yaml +870 -0
  457. test/new-results/test/parameters/simu/hmm/hmms/IGHD3-22_star_01.yaml +744 -0
  458. test/new-results/test/parameters/simu/hmm/hmms/IGHD6-13_star_01.yaml +267 -268
  459. test/new-results/test/parameters/simu/hmm/hmms/IGHD6-19_star_01.yaml +534 -0
  460. test/new-results/test/parameters/simu/hmm/hmms/IGHJ1_star_01.yaml +986 -0
  461. test/new-results/test/parameters/simu/hmm/hmms/IGHJ4_star_02.yaml +306 -306
  462. test/new-results/test/parameters/simu/hmm/hmms/IGHJ6_star_02.yaml +284 -284
  463. test/new-results/test/parameters/simu/hmm/hmms/IGHV1-18_star_01.yaml +4484 -0
  464. test/new-results/test/parameters/simu/hmm/hmms/IGHV3-23_star_01.yaml +4484 -0
  465. test/new-results/test/parameters/simu/hmm/hmms/IGHV3-66_star_02.yaml +1191 -1191
  466. test/new-results/test/parameters/simu/hmm/hmms/IGHV3-7_star_05.yaml +2 -2
  467. test/new-results/test/parameters/simu/hmm/hmms/IGHV4-4_star_09.yaml +4438 -0
  468. test/new-results/test/parameters/simu/hmm/hmms/IGHV4-61_star_01.yaml +4529 -0
  469. test/new-results/test/parameters/simu/hmm/hmms/IGHV5-51_star_01.yaml +4484 -0
  470. test/new-results/test/parameters/simu/hmm/j-mean-mute-freqs.csv +5 -5
  471. test/new-results/test/parameters/simu/hmm/j-mean-n-muted.csv +4 -4
  472. test/new-results/test/parameters/simu/hmm/j_gene-dj_insertion-probs.csv +9 -2
  473. test/new-results/test/parameters/simu/hmm/j_gene-j_3p_del-probs.csv +2 -1
  474. test/new-results/test/parameters/simu/hmm/j_gene-j_5p_del-probs.csv +7 -2
  475. test/new-results/test/parameters/simu/hmm/j_gene-probs.csv +2 -1
  476. test/new-results/test/parameters/simu/hmm/jf_insertion-probs.csv +1 -1
  477. test/new-results/test/parameters/simu/hmm/mute-freqs/IGHD1-20_star_01.csv +9 -0
  478. test/new-results/test/parameters/simu/hmm/mute-freqs/IGHD3-16_star_02.csv +30 -0
  479. test/new-results/test/parameters/simu/hmm/mute-freqs/IGHD3-22_star_01.csv +32 -0
  480. test/new-results/test/parameters/simu/hmm/mute-freqs/IGHD6-13_star_01.csv +16 -13
  481. test/new-results/test/parameters/simu/hmm/mute-freqs/IGHD6-19_star_01.csv +22 -0
  482. test/new-results/test/parameters/simu/hmm/mute-freqs/IGHJ1_star_01.csv +50 -0
  483. test/new-results/test/parameters/simu/hmm/mute-freqs/IGHJ4_star_02.csv +44 -40
  484. test/new-results/test/parameters/simu/hmm/mute-freqs/IGHJ6_star_02.csv +2 -0
  485. test/new-results/test/parameters/simu/hmm/mute-freqs/IGHV1-18_star_01.csv +297 -0
  486. test/new-results/test/parameters/simu/hmm/mute-freqs/IGHV3-23_star_01.csv +297 -0
  487. test/new-results/test/parameters/simu/hmm/mute-freqs/IGHV3-66_star_02.csv +293 -291
  488. test/new-results/test/parameters/simu/hmm/mute-freqs/IGHV4-4_star_09.csv +291 -0
  489. test/new-results/test/parameters/simu/hmm/mute-freqs/IGHV4-61_star_01.csv +300 -0
  490. test/new-results/test/parameters/simu/hmm/mute-freqs/IGHV5-51_star_01.csv +296 -0
  491. test/new-results/test/parameters/simu/hmm/seq_content.csv +4 -4
  492. test/new-results/test/parameters/simu/hmm/v-mean-mute-freqs.csv +3 -3
  493. test/new-results/test/parameters/simu/hmm/v-mean-n-muted.csv +7 -7
  494. test/new-results/test/parameters/simu/hmm/v_gene-probs.csv +6 -1
  495. test/new-results/test/parameters/simu/hmm/v_gene-v_3p_del-probs.csv +7 -1
  496. test/new-results/test/parameters/simu/hmm/v_gene-v_5p_del-probs.csv +6 -1
  497. test/new-results/test/parameters/simu/hmm/vd_insertion_content.csv +4 -4
  498. test/new-results/test/parameters/simu/sw/all-mean-mute-freqs.csv +3 -3
  499. test/new-results/test/parameters/simu/sw/all-mean-n-muted.csv +8 -8
  500. test/new-results/test/parameters/simu/sw/all-probs.csv +9 -1
  501. test/new-results/test/parameters/simu/sw/cluster_size.csv +1 -1
  502. test/new-results/test/parameters/simu/sw/d-mean-mute-freqs.csv +5 -5
  503. test/new-results/test/parameters/simu/sw/d-mean-n-muted.csv +3 -3
  504. test/new-results/test/parameters/simu/sw/d_gene-d_3p_del-probs.csv +7 -1
  505. test/new-results/test/parameters/simu/sw/d_gene-d_5p_del-probs.csv +7 -1
  506. test/new-results/test/parameters/simu/sw/d_gene-probs.csv +5 -1
  507. test/new-results/test/parameters/simu/sw/d_gene-vd_insertion-probs.csv +8 -1
  508. test/new-results/test/parameters/simu/sw/dj_insertion_content.csv +4 -4
  509. test/new-results/test/parameters/simu/sw/fv_insertion-probs.csv +1 -1
  510. test/new-results/test/parameters/simu/sw/germline-sets/igh/extras.csv +6 -0
  511. test/new-results/test/parameters/simu/sw/germline-sets/igh/ighd.fasta +8 -0
  512. test/new-results/test/parameters/simu/sw/germline-sets/igh/ighj.fasta +2 -0
  513. test/new-results/test/parameters/simu/sw/germline-sets/igh/ighv.fasta +10 -0
  514. test/new-results/test/parameters/simu/sw/hmms/IGHD1-20_star_01.yaml +449 -0
  515. test/new-results/test/parameters/simu/sw/hmms/IGHD3-16_star_02.yaml +870 -0
  516. test/new-results/test/parameters/simu/sw/hmms/IGHD3-22_star_01.yaml +744 -0
  517. test/new-results/test/parameters/simu/sw/hmms/IGHD6-13_star_01.yaml +267 -268
  518. test/new-results/test/parameters/simu/sw/hmms/IGHD6-19_star_01.yaml +534 -0
  519. test/new-results/test/parameters/simu/sw/hmms/IGHJ1_star_01.yaml +986 -0
  520. test/new-results/test/parameters/simu/sw/hmms/IGHJ4_star_02.yaml +306 -306
  521. test/new-results/test/parameters/simu/sw/hmms/IGHJ6_star_02.yaml +22 -22
  522. test/new-results/test/parameters/simu/sw/hmms/IGHV1-18_star_01.yaml +4484 -0
  523. test/new-results/test/parameters/simu/sw/hmms/IGHV3-23_star_01.yaml +4484 -0
  524. test/new-results/test/parameters/simu/sw/hmms/IGHV3-66_star_02.yaml +1191 -1191
  525. test/new-results/test/parameters/simu/sw/hmms/IGHV3-7_star_05.yaml +2 -2
  526. test/new-results/test/parameters/simu/sw/hmms/IGHV4-4_star_09.yaml +4438 -0
  527. test/new-results/test/parameters/simu/sw/hmms/IGHV4-61_star_01.yaml +4529 -0
  528. test/new-results/test/parameters/simu/sw/hmms/IGHV5-51_star_01.yaml +4484 -0
  529. test/new-results/test/parameters/simu/sw/j-mean-mute-freqs.csv +4 -4
  530. test/new-results/test/parameters/simu/sw/j-mean-n-muted.csv +3 -3
  531. test/new-results/test/parameters/simu/sw/j_gene-dj_insertion-probs.csv +7 -1
  532. test/new-results/test/parameters/simu/sw/j_gene-j_3p_del-probs.csv +2 -1
  533. test/new-results/test/parameters/simu/sw/j_gene-j_5p_del-probs.csv +7 -1
  534. test/new-results/test/parameters/simu/sw/j_gene-probs.csv +2 -1
  535. test/new-results/test/parameters/simu/sw/jf_insertion-probs.csv +1 -1
  536. test/new-results/test/parameters/simu/sw/mute-freqs/IGHD1-20_star_01.csv +9 -0
  537. test/new-results/test/parameters/simu/sw/mute-freqs/IGHD3-16_star_02.csv +30 -0
  538. test/new-results/test/parameters/simu/sw/mute-freqs/IGHD3-22_star_01.csv +32 -0
  539. test/new-results/test/parameters/simu/sw/mute-freqs/IGHD6-13_star_01.csv +16 -13
  540. test/new-results/test/parameters/simu/sw/mute-freqs/IGHD6-19_star_01.csv +20 -0
  541. test/new-results/test/parameters/simu/sw/mute-freqs/IGHJ1_star_01.csv +50 -0
  542. test/new-results/test/parameters/simu/sw/mute-freqs/IGHJ4_star_02.csv +48 -40
  543. test/new-results/test/parameters/simu/sw/mute-freqs/IGHV1-18_star_01.csv +297 -0
  544. test/new-results/test/parameters/simu/sw/mute-freqs/IGHV3-23_star_01.csv +297 -0
  545. test/new-results/test/parameters/simu/sw/mute-freqs/IGHV3-66_star_02.csv +293 -291
  546. test/new-results/test/parameters/simu/sw/mute-freqs/IGHV4-4_star_09.csv +291 -0
  547. test/new-results/test/parameters/simu/sw/mute-freqs/IGHV4-61_star_01.csv +300 -0
  548. test/new-results/test/parameters/simu/sw/mute-freqs/IGHV5-51_star_01.csv +296 -0
  549. test/new-results/test/parameters/simu/sw/seq_content.csv +4 -4
  550. test/new-results/test/parameters/simu/sw/v-mean-mute-freqs.csv +3 -3
  551. test/new-results/test/parameters/simu/sw/v-mean-n-muted.csv +7 -7
  552. test/new-results/test/parameters/simu/sw/v_gene-probs.csv +6 -1
  553. test/new-results/test/parameters/simu/sw/v_gene-v_3p_del-probs.csv +7 -1
  554. test/new-results/test/parameters/simu/sw/v_gene-v_5p_del-probs.csv +6 -1
  555. test/new-results/test/parameters/simu/sw/vd_insertion_content.csv +4 -4
  556. test/new-results/test/parameters/simu/sw-cache.yaml +1 -1
  557. test/new-results/test/parameters/simu/true/all-mean-mute-freqs.csv +43 -0
  558. test/new-results/test/parameters/simu/true/all-mean-n-muted.csv +155 -0
  559. test/new-results/test/parameters/simu/true/all-probs.csv +10 -0
  560. test/new-results/test/parameters/simu/true/cluster_size.csv +7 -0
  561. test/new-results/test/parameters/simu/true/d-mean-mute-freqs.csv +43 -0
  562. test/new-results/test/parameters/simu/true/d-mean-n-muted.csv +14 -0
  563. test/new-results/test/parameters/simu/true/d_gene-d_3p_del-probs.csv +9 -0
  564. test/new-results/test/parameters/simu/true/d_gene-d_5p_del-probs.csv +10 -0
  565. test/new-results/test/parameters/simu/true/d_gene-probs.csv +7 -0
  566. test/new-results/test/parameters/simu/true/d_gene-vd_insertion-probs.csv +10 -0
  567. test/new-results/test/parameters/simu/true/dj_insertion_content.csv +5 -0
  568. test/new-results/test/parameters/simu/true/fv_insertion-probs.csv +2 -0
  569. test/new-results/test/parameters/simu/true/germline-sets/igh/extras.csv +11 -0
  570. test/new-results/test/parameters/simu/true/germline-sets/igh/ighd.fasta +12 -0
  571. test/new-results/test/parameters/simu/true/germline-sets/igh/ighj.fasta +6 -0
  572. test/new-results/test/parameters/simu/true/germline-sets/igh/ighv.fasta +14 -0
  573. test/new-results/test/parameters/simu/true/j-mean-mute-freqs.csv +43 -0
  574. test/new-results/test/parameters/simu/true/j-mean-n-muted.csv +25 -0
  575. test/new-results/test/parameters/simu/true/j_gene-dj_insertion-probs.csv +7 -0
  576. test/new-results/test/parameters/simu/true/j_gene-j_3p_del-probs.csv +4 -0
  577. test/new-results/test/parameters/simu/true/j_gene-j_5p_del-probs.csv +9 -0
  578. test/new-results/test/parameters/simu/true/j_gene-probs.csv +4 -0
  579. test/new-results/test/parameters/simu/true/jf_insertion-probs.csv +2 -0
  580. test/new-results/test/parameters/simu/true/mute-freqs/IGHD1-20_star_01.csv +8 -0
  581. test/new-results/test/parameters/simu/true/mute-freqs/IGHD3-16_star_02.csv +30 -0
  582. test/new-results/test/parameters/simu/true/mute-freqs/IGHD3-22_star_01.csv +32 -0
  583. test/new-results/test/parameters/simu/true/mute-freqs/IGHD6-13_star_01.csv +22 -0
  584. test/new-results/test/parameters/simu/true/mute-freqs/IGHD6-19_star_01.csv +22 -0
  585. test/new-results/test/parameters/simu/true/mute-freqs/IGHD6-6_star_01.csv +13 -0
  586. test/new-results/test/parameters/simu/true/mute-freqs/IGHJ1_star_01.csv +50 -0
  587. test/new-results/test/parameters/simu/true/mute-freqs/IGHJ4_star_02.csv +45 -0
  588. test/new-results/test/parameters/simu/true/mute-freqs/IGHJ6_star_02.csv +47 -0
  589. test/new-results/test/parameters/simu/true/mute-freqs/IGHV1-18_star_01.csv +297 -0
  590. test/new-results/test/parameters/simu/true/mute-freqs/IGHV3-23_star_01.csv +297 -0
  591. test/new-results/test/parameters/simu/true/mute-freqs/IGHV3-66_star_02.csv +294 -0
  592. test/new-results/test/parameters/simu/true/mute-freqs/IGHV3-7_star_05.csv +297 -0
  593. test/new-results/test/parameters/simu/true/mute-freqs/IGHV4-4_star_09.csv +291 -0
  594. test/new-results/test/parameters/simu/true/mute-freqs/IGHV4-61_star_01.csv +300 -0
  595. test/new-results/test/parameters/simu/true/mute-freqs/IGHV5-51_star_01.csv +296 -0
  596. test/new-results/test/parameters/simu/true/seq_content.csv +5 -0
  597. test/new-results/test/parameters/simu/true/v-mean-mute-freqs.csv +43 -0
  598. test/new-results/test/parameters/simu/true/v-mean-n-muted.csv +122 -0
  599. test/new-results/test/parameters/simu/true/v_gene-probs.csv +8 -0
  600. test/new-results/test/parameters/simu/true/v_gene-v_3p_del-probs.csv +9 -0
  601. test/new-results/test/parameters/simu/true/v_gene-v_5p_del-probs.csv +8 -0
  602. test/new-results/test/parameters/simu/true/vd_insertion_content.csv +5 -0
  603. test/new-results/test.log +203 -24
  604. test/new-results/vsearch-partition-new-simu.yaml +1 -0
  605. test/paired/new-results/partition-new-simu/fasttree/iclust-0/log +3 -3
  606. test/paired/new-results/partition-new-simu/fasttree/iclust-1/log +5 -5
  607. test/paired/new-results/partition-new-simu/fasttree/iclust-2/log +2 -2
  608. test/paired/new-results/partition-new-simu/igh+igl/partition-igl/fasttree/iclust-0/log +1 -1
  609. test/paired/new-results/partition-new-simu-annotation-performance/plots/flcount-matrix.svg +107 -107
  610. test/paired/new-results/partition-new-simu-annotation-performance/plots/func-non-func-per-drop-log.svg +83 -83
  611. test/paired/new-results/partition-new-simu-annotation-performance/plots/func-non-func-per-drop.svg +61 -61
  612. test/paired/new-results/partition-new-simu-annotation-performance/plots/paired-seqs-per-seq-after.svg +18 -18
  613. test/paired/new-results/partition-new-simu-annotation-performance/plots/paired-seqs-per-seq-before.svg +24 -24
  614. test/paired/new-results/partition-new-simu-annotation-performance/plots/pseq-matrix.svg +35 -35
  615. test/paired/new-results/partition-new-simu-annotation-performance/plots/seqs-per-droplet.svg +22 -22
  616. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-correct-family.svg +45 -45
  617. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-correct.svg +45 -45
  618. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-mispaired.svg +45 -45
  619. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-multiple.svg +15 -15
  620. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-near-family.svg +15 -15
  621. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-total.svg +47 -47
  622. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-unpaired.svg +48 -48
  623. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance.svg +27 -27
  624. test/paired/new-results/run-times.csv +6 -6
  625. test/paired/new-results/subset-partition-new-simu/isub-0/partition.log +43 -43
  626. test/paired/new-results/subset-partition-new-simu/isub-1/partition.log +40 -40
  627. test/paired/new-results/subset-partition-new-simu/merged-partition.log +25 -25
  628. test/paired/new-results/subset-partition-new-simu/merged-subsets/parameters/igh/sw-cache.yaml +1 -1
  629. test/paired/new-results/subset-partition-new-simu/merged-subsets/parameters/igk/sw-cache.yaml +1 -1
  630. test/paired/new-results/subset-partition-new-simu/merged-subsets/parameters/igl/sw-cache.yaml +1 -1
  631. test/paired/new-results/test.log +135 -135
  632. test/test.py +6 -0
  633. test/trees.nwk +100 -0
  634. {partis_bcr-1.0.11.post1.dev1.data → partis_bcr-1.0.11.post1.dev7.data}/scripts/cf-alleles.py +0 -0
  635. {partis_bcr-1.0.11.post1.dev1.data → partis_bcr-1.0.11.post1.dev7.data}/scripts/cf-germlines.py +0 -0
  636. {partis_bcr-1.0.11.post1.dev1.data → partis_bcr-1.0.11.post1.dev7.data}/scripts/compare-plotdirs.py +0 -0
  637. {partis_bcr-1.0.11.post1.dev1.data → partis_bcr-1.0.11.post1.dev7.data}/scripts/extract-pairing-info.py +0 -0
  638. {partis_bcr-1.0.11.post1.dev1.data → partis_bcr-1.0.11.post1.dev7.data}/scripts/gctree-run.py +0 -0
  639. {partis_bcr-1.0.11.post1.dev1.data → partis_bcr-1.0.11.post1.dev7.data}/scripts/get-naive-probabilities.py +0 -0
  640. {partis_bcr-1.0.11.post1.dev1.data → partis_bcr-1.0.11.post1.dev7.data}/scripts/parse-output.py +0 -0
  641. {partis_bcr-1.0.11.post1.dev1.data → partis_bcr-1.0.11.post1.dev7.data}/scripts/split-loci.py +0 -0
  642. {partis_bcr-1.0.11.post1.dev1.dist-info → partis_bcr-1.0.11.post1.dev7.dist-info}/WHEEL +0 -0
  643. {partis_bcr-1.0.11.post1.dev1.dist-info → partis_bcr-1.0.11.post1.dev7.dist-info}/entry_points.txt +0 -0
  644. {partis_bcr-1.0.11.post1.dev1.dist-info → partis_bcr-1.0.11.post1.dev7.dist-info}/licenses/COPYING +0 -0
  645. {partis_bcr-1.0.11.post1.dev1.dist-info → partis_bcr-1.0.11.post1.dev7.dist-info}/top_level.txt +0 -0
test/new-results/test/parameters/simu/hmm/hmms/IGHV3-66_star_02.yaml CHANGED
@@ -1,8 +1,8 @@
1
1
  !!python/object:python.hmmwriter.HMM
2
2
  extras:
3
- gene_prob: 0.7
4
- overall_mute_freq: 0.019000000000000003
5
- per_gene_mute_freq: 0.11156977205393126
3
+ gene_prob: 0.3888888888888889
4
+ overall_mute_freq: 0.012499999999999999
5
+ per_gene_mute_freq: 0.08494687498674726
6
6
  name: IGHV3-66_star_02
7
7
  states:
8
8
  - !!python/object:python.hmmwriter.State
@@ -10,8 +10,8 @@ states:
10
10
  extras: {}
11
11
  name: init
12
12
  transitions:
13
- IGHV3-66_star_02_0: 0.6666666666666666
14
- insert_left_N: 0.33333333333333337
13
+ IGHV3-66_star_02_0: 0.38888888888888884
14
+ insert_left_N: 0.6111111111111112
15
15
  - !!python/object:python.hmmwriter.State
16
16
  emissions:
17
17
  probs:
@@ -26,15 +26,15 @@ states:
26
26
  germline: N
27
27
  name: insert_left_N
28
28
  transitions:
29
- IGHV3-66_star_02_0: 0.6666666666666666
30
- insert_left_N: 0.33333333333333337
29
+ IGHV3-66_star_02_0: 0.38888888888888884
30
+ insert_left_N: 0.6111111111111112
31
31
  - !!python/object:python.hmmwriter.State
32
32
  emissions:
33
33
  probs:
34
- A: 0.036749014910624996
35
- C: 0.036749014910624996
36
- G: 0.889752955268125
37
- T: 0.036749014910624996
34
+ A: 0.0276162271726
35
+ C: 0.0276162271726
36
+ G: 0.9171513184822
37
+ T: 0.0276162271726
38
38
  track: nukes
39
39
  extras:
40
40
  ambiguous_char: N
@@ -46,10 +46,10 @@ states:
46
46
  - !!python/object:python.hmmwriter.State
47
47
  emissions:
48
48
  probs:
49
- A: 0.889752955268125
50
- C: 0.036749014910624996
51
- G: 0.036749014910624996
52
- T: 0.036749014910624996
49
+ A: 0.9171513184822
50
+ C: 0.0276162271726
51
+ G: 0.0276162271726
52
+ T: 0.0276162271726
53
53
  track: nukes
54
54
  extras:
55
55
  ambiguous_char: N
@@ -61,10 +61,10 @@ states:
61
61
  - !!python/object:python.hmmwriter.State
62
62
  emissions:
63
63
  probs:
64
- A: 0.036749014910624996
65
- C: 0.036749014910624996
66
- G: 0.889752955268125
67
- T: 0.036749014910624996
64
+ A: 0.0276162271726
65
+ C: 0.0276162271726
66
+ G: 0.9171513184822
67
+ T: 0.0276162271726
68
68
  track: nukes
69
69
  extras:
70
70
  ambiguous_char: N
@@ -76,10 +76,10 @@ states:
76
76
  - !!python/object:python.hmmwriter.State
77
77
  emissions:
78
78
  probs:
79
- A: 0.036749014910624996
80
- C: 0.036749014910624996
81
- G: 0.889752955268125
82
- T: 0.036749014910624996
79
+ A: 0.0276162271726
80
+ C: 0.0276162271726
81
+ G: 0.9171513184822
82
+ T: 0.0276162271726
83
83
  track: nukes
84
84
  extras:
85
85
  ambiguous_char: N
@@ -91,10 +91,10 @@ states:
91
91
  - !!python/object:python.hmmwriter.State
92
92
  emissions:
93
93
  probs:
94
- A: 0.036749014910624996
95
- C: 0.036749014910624996
96
- G: 0.036749014910624996
97
- T: 0.889752955268125
94
+ A: 0.0276162271726
95
+ C: 0.0276162271726
96
+ G: 0.0276162271726
97
+ T: 0.9171513184822
98
98
  track: nukes
99
99
  extras:
100
100
  ambiguous_char: N
@@ -106,10 +106,10 @@ states:
106
106
  - !!python/object:python.hmmwriter.State
107
107
  emissions:
108
108
  probs:
109
- A: 0.036749014910624996
110
- C: 0.036749014910624996
111
- G: 0.889752955268125
112
- T: 0.036749014910624996
109
+ A: 0.0276162271726
110
+ C: 0.0276162271726
111
+ G: 0.9171513184822
112
+ T: 0.0276162271726
113
113
  track: nukes
114
114
  extras:
115
115
  ambiguous_char: N
@@ -121,10 +121,10 @@ states:
121
121
  - !!python/object:python.hmmwriter.State
122
122
  emissions:
123
123
  probs:
124
- A: 0.036749014910624996
125
- C: 0.889752955268125
126
- G: 0.036749014910624996
127
- T: 0.036749014910624996
124
+ A: 0.0276162271726
125
+ C: 0.9171513184822
126
+ G: 0.0276162271726
127
+ T: 0.0276162271726
128
128
  track: nukes
129
129
  extras:
130
130
  ambiguous_char: N
@@ -136,10 +136,10 @@ states:
136
136
  - !!python/object:python.hmmwriter.State
137
137
  emissions:
138
138
  probs:
139
- A: 0.889752955268125
140
- C: 0.036749014910624996
141
- G: 0.036749014910624996
142
- T: 0.036749014910624996
139
+ A: 0.9171513184822
140
+ C: 0.0276162271726
141
+ G: 0.0276162271726
142
+ T: 0.0276162271726
143
143
  track: nukes
144
144
  extras:
145
145
  ambiguous_char: N
@@ -151,10 +151,10 @@ states:
151
151
  - !!python/object:python.hmmwriter.State
152
152
  emissions:
153
153
  probs:
154
- A: 0.036749014910624996
155
- C: 0.036749014910624996
156
- G: 0.889752955268125
157
- T: 0.036749014910624996
154
+ A: 0.0276162271726
155
+ C: 0.0276162271726
156
+ G: 0.9171513184822
157
+ T: 0.0276162271726
158
158
  track: nukes
159
159
  extras:
160
160
  ambiguous_char: N
@@ -166,10 +166,10 @@ states:
166
166
  - !!python/object:python.hmmwriter.State
167
167
  emissions:
168
168
  probs:
169
- A: 0.036749014910624996
170
- C: 0.889752955268125
171
- G: 0.036749014910624996
172
- T: 0.036749014910624996
169
+ A: 0.0276162271726
170
+ C: 0.9171513184822
171
+ G: 0.0276162271726
172
+ T: 0.0276162271726
173
173
  track: nukes
174
174
  extras:
175
175
  ambiguous_char: N
@@ -181,10 +181,10 @@ states:
181
181
  - !!python/object:python.hmmwriter.State
182
182
  emissions:
183
183
  probs:
184
- A: 0.036749014910624996
185
- C: 0.036749014910624996
186
- G: 0.036749014910624996
187
- T: 0.889752955268125
184
+ A: 0.0276162271726
185
+ C: 0.0276162271726
186
+ G: 0.0276162271726
187
+ T: 0.9171513184822
188
188
  track: nukes
189
189
  extras:
190
190
  ambiguous_char: N
@@ -196,10 +196,10 @@ states:
196
196
  - !!python/object:python.hmmwriter.State
197
197
  emissions:
198
198
  probs:
199
- A: 0.03833333333333333
200
- C: 0.03833333333333333
201
- G: 0.885
202
- T: 0.03833333333333333
199
+ A: 0.026666666666666665
200
+ C: 0.026666666666666665
201
+ G: 0.92
202
+ T: 0.026666666666666665
203
203
  track: nukes
204
204
  extras:
205
205
  ambiguous_char: N
@@ -211,10 +211,10 @@ states:
211
211
  - !!python/object:python.hmmwriter.State
212
212
  emissions:
213
213
  probs:
214
- A: 0.036749014910624996
215
- C: 0.036749014910624996
216
- G: 0.889752955268125
217
- T: 0.036749014910624996
214
+ A: 0.0276162271726
215
+ C: 0.0276162271726
216
+ G: 0.9171513184822
217
+ T: 0.0276162271726
218
218
  track: nukes
219
219
  extras:
220
220
  ambiguous_char: N
@@ -226,10 +226,10 @@ states:
226
226
  - !!python/object:python.hmmwriter.State
227
227
  emissions:
228
228
  probs:
229
- A: 0.036749014910624996
230
- C: 0.036749014910624996
231
- G: 0.036749014910624996
232
- T: 0.889752955268125
229
+ A: 0.0276162271726
230
+ C: 0.0276162271726
231
+ G: 0.0276162271726
232
+ T: 0.9171513184822
233
233
  track: nukes
234
234
  extras:
235
235
  ambiguous_char: N
@@ -241,10 +241,10 @@ states:
241
241
  - !!python/object:python.hmmwriter.State
242
242
  emissions:
243
243
  probs:
244
- A: 0.036749014910624996
245
- C: 0.036749014910624996
246
- G: 0.889752955268125
247
- T: 0.036749014910624996
244
+ A: 0.0276162271726
245
+ C: 0.0276162271726
246
+ G: 0.9171513184822
247
+ T: 0.0276162271726
248
248
  track: nukes
249
249
  extras:
250
250
  ambiguous_char: N
@@ -256,10 +256,10 @@ states:
256
256
  - !!python/object:python.hmmwriter.State
257
257
  emissions:
258
258
  probs:
259
- A: 0.036749014910624996
260
- C: 0.036749014910624996
261
- G: 0.889752955268125
262
- T: 0.036749014910624996
259
+ A: 0.0276162271726
260
+ C: 0.0276162271726
261
+ G: 0.9171513184822
262
+ T: 0.0276162271726
263
263
  track: nukes
264
264
  extras:
265
265
  ambiguous_char: N
@@ -271,10 +271,10 @@ states:
271
271
  - !!python/object:python.hmmwriter.State
272
272
  emissions:
273
273
  probs:
274
- A: 0.889752955268125
275
- C: 0.036749014910624996
276
- G: 0.036749014910624996
277
- T: 0.036749014910624996
274
+ A: 0.9171513184822
275
+ C: 0.0276162271726
276
+ G: 0.0276162271726
277
+ T: 0.0276162271726
278
278
  track: nukes
279
279
  extras:
280
280
  ambiguous_char: N
@@ -286,10 +286,10 @@ states:
286
286
  - !!python/object:python.hmmwriter.State
287
287
  emissions:
288
288
  probs:
289
- A: 0.036749014910624996
290
- C: 0.036749014910624996
291
- G: 0.889752955268125
292
- T: 0.036749014910624996
289
+ A: 0.0276162271726
290
+ C: 0.0276162271726
291
+ G: 0.9171513184822
292
+ T: 0.0276162271726
293
293
  track: nukes
294
294
  extras:
295
295
  ambiguous_char: N
@@ -301,10 +301,10 @@ states:
301
301
  - !!python/object:python.hmmwriter.State
302
302
  emissions:
303
303
  probs:
304
- A: 0.036749014910624996
305
- C: 0.036749014910624996
306
- G: 0.036749014910624996
307
- T: 0.889752955268125
304
+ A: 0.0276162271726
305
+ C: 0.0276162271726
306
+ G: 0.0276162271726
307
+ T: 0.9171513184822
308
308
  track: nukes
309
309
  extras:
310
310
  ambiguous_char: N
@@ -316,10 +316,10 @@ states:
316
316
  - !!python/object:python.hmmwriter.State
317
317
  emissions:
318
318
  probs:
319
- A: 0.03833333333333333
320
- C: 0.885
321
- G: 0.03833333333333333
322
- T: 0.03833333333333333
319
+ A: 0.026666666666666665
320
+ C: 0.92
321
+ G: 0.026666666666666665
322
+ T: 0.026666666666666665
323
323
  track: nukes
324
324
  extras:
325
325
  ambiguous_char: N
@@ -331,10 +331,10 @@ states:
331
331
  - !!python/object:python.hmmwriter.State
332
332
  emissions:
333
333
  probs:
334
- A: 0.036749014910624996
335
- C: 0.036749014910624996
336
- G: 0.036749014910624996
337
- T: 0.889752955268125
334
+ A: 0.0276162271726
335
+ C: 0.0276162271726
336
+ G: 0.0276162271726
337
+ T: 0.9171513184822
338
338
  track: nukes
339
339
  extras:
340
340
  ambiguous_char: N
@@ -346,10 +346,10 @@ states:
346
346
  - !!python/object:python.hmmwriter.State
347
347
  emissions:
348
348
  probs:
349
- A: 0.036749014910624996
350
- C: 0.036749014910624996
351
- G: 0.889752955268125
352
- T: 0.036749014910624996
349
+ A: 0.0276162271726
350
+ C: 0.0276162271726
351
+ G: 0.9171513184822
352
+ T: 0.0276162271726
353
353
  track: nukes
354
354
  extras:
355
355
  ambiguous_char: N
@@ -361,10 +361,10 @@ states:
361
361
  - !!python/object:python.hmmwriter.State
362
362
  emissions:
363
363
  probs:
364
- A: 0.036749014910624996
365
- C: 0.036749014910624996
366
- G: 0.889752955268125
367
- T: 0.036749014910624996
364
+ A: 0.0276162271726
365
+ C: 0.0276162271726
366
+ G: 0.9171513184822
367
+ T: 0.0276162271726
368
368
  track: nukes
369
369
  extras:
370
370
  ambiguous_char: N
@@ -376,10 +376,10 @@ states:
376
376
  - !!python/object:python.hmmwriter.State
377
377
  emissions:
378
378
  probs:
379
- A: 0.036749014910624996
380
- C: 0.036749014910624996
381
- G: 0.889752955268125
382
- T: 0.036749014910624996
379
+ A: 0.0276162271726
380
+ C: 0.0276162271726
381
+ G: 0.9171513184822
382
+ T: 0.0276162271726
383
383
  track: nukes
384
384
  extras:
385
385
  ambiguous_char: N
@@ -391,10 +391,10 @@ states:
391
391
  - !!python/object:python.hmmwriter.State
392
392
  emissions:
393
393
  probs:
394
- A: 0.036749014910624996
395
- C: 0.036749014910624996
396
- G: 0.889752955268125
397
- T: 0.036749014910624996
394
+ A: 0.0276162271726
395
+ C: 0.0276162271726
396
+ G: 0.9171513184822
397
+ T: 0.0276162271726
398
398
  track: nukes
399
399
  extras:
400
400
  ambiguous_char: N
@@ -406,10 +406,10 @@ states:
406
406
  - !!python/object:python.hmmwriter.State
407
407
  emissions:
408
408
  probs:
409
- A: 0.14583333333333334
410
- C: 0.020833333333333332
411
- G: 0.8125
412
- T: 0.020833333333333332
409
+ A: 0.22500000000000003
410
+ C: 0.025
411
+ G: 0.725
412
+ T: 0.025
413
413
  track: nukes
414
414
  extras:
415
415
  ambiguous_char: N
@@ -421,10 +421,10 @@ states:
421
421
  - !!python/object:python.hmmwriter.State
422
422
  emissions:
423
423
  probs:
424
- A: 0.885
425
- C: 0.03833333333333333
426
- G: 0.03833333333333333
427
- T: 0.03833333333333333
424
+ A: 0.92
425
+ C: 0.026666666666666665
426
+ G: 0.026666666666666665
427
+ T: 0.026666666666666665
428
428
  track: nukes
429
429
  extras:
430
430
  ambiguous_char: N
@@ -436,10 +436,10 @@ states:
436
436
  - !!python/object:python.hmmwriter.State
437
437
  emissions:
438
438
  probs:
439
- A: 0.036749014910624996
440
- C: 0.036749014910624996
441
- G: 0.889752955268125
442
- T: 0.036749014910624996
439
+ A: 0.0276162271726
440
+ C: 0.0276162271726
441
+ G: 0.9171513184822
442
+ T: 0.0276162271726
443
443
  track: nukes
444
444
  extras:
445
445
  ambiguous_char: N
@@ -451,10 +451,10 @@ states:
451
451
  - !!python/object:python.hmmwriter.State
452
452
  emissions:
453
453
  probs:
454
- A: 0.036749014910624996
455
- C: 0.036749014910624996
456
- G: 0.889752955268125
457
- T: 0.036749014910624996
454
+ A: 0.0276162271726
455
+ C: 0.0276162271726
456
+ G: 0.9171513184822
457
+ T: 0.0276162271726
458
458
  track: nukes
459
459
  extras:
460
460
  ambiguous_char: N
@@ -466,10 +466,10 @@ states:
466
466
  - !!python/object:python.hmmwriter.State
467
467
  emissions:
468
468
  probs:
469
- A: 0.036749014910624996
470
- C: 0.889752955268125
471
- G: 0.036749014910624996
472
- T: 0.036749014910624996
469
+ A: 0.0276162271726
470
+ C: 0.9171513184822
471
+ G: 0.0276162271726
472
+ T: 0.0276162271726
473
473
  track: nukes
474
474
  extras:
475
475
  ambiguous_char: N
@@ -481,10 +481,10 @@ states:
481
481
  - !!python/object:python.hmmwriter.State
482
482
  emissions:
483
483
  probs:
484
- A: 0.036749014910624996
485
- C: 0.036749014910624996
486
- G: 0.036749014910624996
487
- T: 0.889752955268125
484
+ A: 0.0276162271726
485
+ C: 0.0276162271726
486
+ G: 0.0276162271726
487
+ T: 0.9171513184822
488
488
  track: nukes
489
489
  extras:
490
490
  ambiguous_char: N
@@ -496,10 +496,10 @@ states:
496
496
  - !!python/object:python.hmmwriter.State
497
497
  emissions:
498
498
  probs:
499
- A: 0.036749014910624996
500
- C: 0.036749014910624996
501
- G: 0.036749014910624996
502
- T: 0.889752955268125
499
+ A: 0.0276162271726
500
+ C: 0.0276162271726
501
+ G: 0.0276162271726
502
+ T: 0.9171513184822
503
503
  track: nukes
504
504
  extras:
505
505
  ambiguous_char: N
@@ -511,10 +511,10 @@ states:
511
511
  - !!python/object:python.hmmwriter.State
512
512
  emissions:
513
513
  probs:
514
- A: 0.036749014910624996
515
- C: 0.036749014910624996
516
- G: 0.889752955268125
517
- T: 0.036749014910624996
514
+ A: 0.0276162271726
515
+ C: 0.0276162271726
516
+ G: 0.9171513184822
517
+ T: 0.0276162271726
518
518
  track: nukes
519
519
  extras:
520
520
  ambiguous_char: N
@@ -526,10 +526,10 @@ states:
526
526
  - !!python/object:python.hmmwriter.State
527
527
  emissions:
528
528
  probs:
529
- A: 0.036749014910624996
530
- C: 0.036749014910624996
531
- G: 0.889752955268125
532
- T: 0.036749014910624996
529
+ A: 0.0276162271726
530
+ C: 0.0276162271726
531
+ G: 0.9171513184822
532
+ T: 0.0276162271726
533
533
  track: nukes
534
534
  extras:
535
535
  ambiguous_char: N
@@ -541,10 +541,10 @@ states:
541
541
  - !!python/object:python.hmmwriter.State
542
542
  emissions:
543
543
  probs:
544
- A: 0.036749014910624996
545
- C: 0.036749014910624996
546
- G: 0.036749014910624996
547
- T: 0.889752955268125
544
+ A: 0.0276162271726
545
+ C: 0.0276162271726
546
+ G: 0.0276162271726
547
+ T: 0.9171513184822
548
548
  track: nukes
549
549
  extras:
550
550
  ambiguous_char: N
@@ -556,10 +556,10 @@ states:
556
556
  - !!python/object:python.hmmwriter.State
557
557
  emissions:
558
558
  probs:
559
- A: 0.036749014910624996
560
- C: 0.889752955268125
561
- G: 0.036749014910624996
562
- T: 0.036749014910624996
559
+ A: 0.0276162271726
560
+ C: 0.9171513184822
561
+ G: 0.0276162271726
562
+ T: 0.0276162271726
563
563
  track: nukes
564
564
  extras:
565
565
  ambiguous_char: N
@@ -571,10 +571,10 @@ states:
571
571
  - !!python/object:python.hmmwriter.State
572
572
  emissions:
573
573
  probs:
574
- A: 0.036749014910624996
575
- C: 0.889752955268125
576
- G: 0.036749014910624996
577
- T: 0.036749014910624996
574
+ A: 0.0276162271726
575
+ C: 0.9171513184822
576
+ G: 0.0276162271726
577
+ T: 0.0276162271726
578
578
  track: nukes
579
579
  extras:
580
580
  ambiguous_char: N
@@ -586,10 +586,10 @@ states:
586
586
  - !!python/object:python.hmmwriter.State
587
587
  emissions:
588
588
  probs:
589
- A: 0.885
590
- C: 0.03833333333333333
591
- G: 0.03833333333333333
592
- T: 0.03833333333333333
589
+ A: 0.92
590
+ C: 0.026666666666666665
591
+ G: 0.026666666666666665
592
+ T: 0.026666666666666665
593
593
  track: nukes
594
594
  extras:
595
595
  ambiguous_char: N
@@ -601,10 +601,10 @@ states:
601
601
  - !!python/object:python.hmmwriter.State
602
602
  emissions:
603
603
  probs:
604
- A: 0.036749014910624996
605
- C: 0.036749014910624996
606
- G: 0.889752955268125
607
- T: 0.036749014910624996
604
+ A: 0.0276162271726
605
+ C: 0.0276162271726
606
+ G: 0.9171513184822
607
+ T: 0.0276162271726
608
608
  track: nukes
609
609
  extras:
610
610
  ambiguous_char: N
@@ -616,10 +616,10 @@ states:
616
616
  - !!python/object:python.hmmwriter.State
617
617
  emissions:
618
618
  probs:
619
- A: 0.036749014910624996
620
- C: 0.889752955268125
621
- G: 0.036749014910624996
622
- T: 0.036749014910624996
619
+ A: 0.0276162271726
620
+ C: 0.9171513184822
621
+ G: 0.0276162271726
622
+ T: 0.0276162271726
623
623
  track: nukes
624
624
  extras:
625
625
  ambiguous_char: N
@@ -631,10 +631,10 @@ states:
631
631
  - !!python/object:python.hmmwriter.State
632
632
  emissions:
633
633
  probs:
634
- A: 0.036749014910624996
635
- C: 0.889752955268125
636
- G: 0.036749014910624996
637
- T: 0.036749014910624996
634
+ A: 0.0276162271726
635
+ C: 0.9171513184822
636
+ G: 0.0276162271726
637
+ T: 0.0276162271726
638
638
  track: nukes
639
639
  extras:
640
640
  ambiguous_char: N
@@ -646,10 +646,10 @@ states:
646
646
  - !!python/object:python.hmmwriter.State
647
647
  emissions:
648
648
  probs:
649
- A: 0.036749014910624996
650
- C: 0.036749014910624996
651
- G: 0.036749014910624996
652
- T: 0.889752955268125
649
+ A: 0.026666666666666665
650
+ C: 0.026666666666666665
651
+ G: 0.026666666666666665
652
+ T: 0.92
653
653
  track: nukes
654
654
  extras:
655
655
  ambiguous_char: N
@@ -661,10 +661,10 @@ states:
661
661
  - !!python/object:python.hmmwriter.State
662
662
  emissions:
663
663
  probs:
664
- A: 0.036749014910624996
665
- C: 0.036749014910624996
666
- G: 0.889752955268125
667
- T: 0.036749014910624996
664
+ A: 0.0276162271726
665
+ C: 0.0276162271726
666
+ G: 0.9171513184822
667
+ T: 0.0276162271726
668
668
  track: nukes
669
669
  extras:
670
670
  ambiguous_char: N
@@ -676,10 +676,10 @@ states:
676
676
  - !!python/object:python.hmmwriter.State
677
677
  emissions:
678
678
  probs:
679
- A: 0.036749014910624996
680
- C: 0.036749014910624996
681
- G: 0.889752955268125
682
- T: 0.036749014910624996
679
+ A: 0.0276162271726
680
+ C: 0.0276162271726
681
+ G: 0.9171513184822
682
+ T: 0.0276162271726
683
683
  track: nukes
684
684
  extras:
685
685
  ambiguous_char: N
@@ -691,10 +691,10 @@ states:
691
691
  - !!python/object:python.hmmwriter.State
692
692
  emissions:
693
693
  probs:
694
- A: 0.036749014910624996
695
- C: 0.036749014910624996
696
- G: 0.889752955268125
697
- T: 0.036749014910624996
694
+ A: 0.0276162271726
695
+ C: 0.0276162271726
696
+ G: 0.9171513184822
697
+ T: 0.0276162271726
698
698
  track: nukes
699
699
  extras:
700
700
  ambiguous_char: N
@@ -706,10 +706,10 @@ states:
706
706
  - !!python/object:python.hmmwriter.State
707
707
  emissions:
708
708
  probs:
709
- A: 0.036749014910624996
710
- C: 0.036749014910624996
711
- G: 0.889752955268125
712
- T: 0.036749014910624996
709
+ A: 0.0276162271726
710
+ C: 0.0276162271726
711
+ G: 0.9171513184822
712
+ T: 0.0276162271726
713
713
  track: nukes
714
714
  extras:
715
715
  ambiguous_char: N
@@ -721,10 +721,10 @@ states:
721
721
  - !!python/object:python.hmmwriter.State
722
722
  emissions:
723
723
  probs:
724
- A: 0.036749014910624996
725
- C: 0.036749014910624996
726
- G: 0.889752955268125
727
- T: 0.036749014910624996
724
+ A: 0.0276162271726
725
+ C: 0.0276162271726
726
+ G: 0.9171513184822
727
+ T: 0.0276162271726
728
728
  track: nukes
729
729
  extras:
730
730
  ambiguous_char: N
@@ -736,10 +736,10 @@ states:
736
736
  - !!python/object:python.hmmwriter.State
737
737
  emissions:
738
738
  probs:
739
- A: 0.036749014910624996
740
- C: 0.036749014910624996
741
- G: 0.889752955268125
742
- T: 0.036749014910624996
739
+ A: 0.0276162271726
740
+ C: 0.0276162271726
741
+ G: 0.9171513184822
742
+ T: 0.0276162271726
743
743
  track: nukes
744
744
  extras:
745
745
  ambiguous_char: N
@@ -751,10 +751,10 @@ states:
751
751
  - !!python/object:python.hmmwriter.State
752
752
  emissions:
753
753
  probs:
754
- A: 0.036749014910624996
755
- C: 0.036749014910624996
756
- G: 0.036749014910624996
757
- T: 0.889752955268125
754
+ A: 0.0276162271726
755
+ C: 0.0276162271726
756
+ G: 0.0276162271726
757
+ T: 0.9171513184822
758
758
  track: nukes
759
759
  extras:
760
760
  ambiguous_char: N
@@ -766,10 +766,10 @@ states:
766
766
  - !!python/object:python.hmmwriter.State
767
767
  emissions:
768
768
  probs:
769
- A: 0.03833333333333333
770
- C: 0.885
771
- G: 0.03833333333333333
772
- T: 0.03833333333333333
769
+ A: 0.026666666666666665
770
+ C: 0.92
771
+ G: 0.026666666666666665
772
+ T: 0.026666666666666665
773
773
  track: nukes
774
774
  extras:
775
775
  ambiguous_char: N
@@ -781,10 +781,10 @@ states:
781
781
  - !!python/object:python.hmmwriter.State
782
782
  emissions:
783
783
  probs:
784
- A: 0.036749014910624996
785
- C: 0.889752955268125
786
- G: 0.036749014910624996
787
- T: 0.036749014910624996
784
+ A: 0.0276162271726
785
+ C: 0.9171513184822
786
+ G: 0.0276162271726
787
+ T: 0.0276162271726
788
788
  track: nukes
789
789
  extras:
790
790
  ambiguous_char: N
@@ -796,10 +796,10 @@ states:
796
796
  - !!python/object:python.hmmwriter.State
797
797
  emissions:
798
798
  probs:
799
- A: 0.036749014910624996
800
- C: 0.889752955268125
801
- G: 0.036749014910624996
802
- T: 0.036749014910624996
799
+ A: 0.0276162271726
800
+ C: 0.9171513184822
801
+ G: 0.0276162271726
802
+ T: 0.0276162271726
803
803
  track: nukes
804
804
  extras:
805
805
  ambiguous_char: N
@@ -811,10 +811,10 @@ states:
811
811
  - !!python/object:python.hmmwriter.State
812
812
  emissions:
813
813
  probs:
814
- A: 0.036749014910624996
815
- C: 0.036749014910624996
816
- G: 0.036749014910624996
817
- T: 0.889752955268125
814
+ A: 0.0276162271726
815
+ C: 0.0276162271726
816
+ G: 0.0276162271726
817
+ T: 0.9171513184822
818
818
  track: nukes
819
819
  extras:
820
820
  ambiguous_char: N
@@ -826,10 +826,10 @@ states:
826
826
  - !!python/object:python.hmmwriter.State
827
827
  emissions:
828
828
  probs:
829
- A: 0.036749014910624996
830
- C: 0.036749014910624996
831
- G: 0.889752955268125
832
- T: 0.036749014910624996
829
+ A: 0.0276162271726
830
+ C: 0.0276162271726
831
+ G: 0.9171513184822
832
+ T: 0.0276162271726
833
833
  track: nukes
834
834
  extras:
835
835
  ambiguous_char: N
@@ -841,10 +841,10 @@ states:
841
841
  - !!python/object:python.hmmwriter.State
842
842
  emissions:
843
843
  probs:
844
- A: 0.889752955268125
845
- C: 0.036749014910624996
846
- G: 0.036749014910624996
847
- T: 0.036749014910624996
844
+ A: 0.9171513184822
845
+ C: 0.0276162271726
846
+ G: 0.0276162271726
847
+ T: 0.0276162271726
848
848
  track: nukes
849
849
  extras:
850
850
  ambiguous_char: N
@@ -856,10 +856,10 @@ states:
856
856
  - !!python/object:python.hmmwriter.State
857
857
  emissions:
858
858
  probs:
859
- A: 0.03833333333333333
860
- C: 0.03833333333333333
861
- G: 0.885
862
- T: 0.03833333333333333
859
+ A: 0.026666666666666665
860
+ C: 0.026666666666666665
861
+ G: 0.92
862
+ T: 0.026666666666666665
863
863
  track: nukes
864
864
  extras:
865
865
  ambiguous_char: N
@@ -871,10 +871,10 @@ states:
871
871
  - !!python/object:python.hmmwriter.State
872
872
  emissions:
873
873
  probs:
874
- A: 0.889752955268125
875
- C: 0.036749014910624996
876
- G: 0.036749014910624996
877
- T: 0.036749014910624996
874
+ A: 0.9171513184822
875
+ C: 0.0276162271726
876
+ G: 0.0276162271726
877
+ T: 0.0276162271726
878
878
  track: nukes
879
879
  extras:
880
880
  ambiguous_char: N
@@ -886,10 +886,10 @@ states:
886
886
  - !!python/object:python.hmmwriter.State
887
887
  emissions:
888
888
  probs:
889
- A: 0.036749014910624996
890
- C: 0.889752955268125
891
- G: 0.036749014910624996
892
- T: 0.036749014910624996
889
+ A: 0.0276162271726
890
+ C: 0.9171513184822
891
+ G: 0.0276162271726
892
+ T: 0.0276162271726
893
893
  track: nukes
894
894
  extras:
895
895
  ambiguous_char: N
@@ -901,10 +901,10 @@ states:
901
901
  - !!python/object:python.hmmwriter.State
902
902
  emissions:
903
903
  probs:
904
- A: 0.036749014910624996
905
- C: 0.036749014910624996
906
- G: 0.036749014910624996
907
- T: 0.889752955268125
904
+ A: 0.0276162271726
905
+ C: 0.0276162271726
906
+ G: 0.0276162271726
907
+ T: 0.9171513184822
908
908
  track: nukes
909
909
  extras:
910
910
  ambiguous_char: N
@@ -916,10 +916,10 @@ states:
916
916
  - !!python/object:python.hmmwriter.State
917
917
  emissions:
918
918
  probs:
919
- A: 0.03833333333333333
920
- C: 0.885
921
- G: 0.03833333333333333
922
- T: 0.03833333333333333
919
+ A: 0.026666666666666665
920
+ C: 0.92
921
+ G: 0.026666666666666665
922
+ T: 0.026666666666666665
923
923
  track: nukes
924
924
  extras:
925
925
  ambiguous_char: N
@@ -931,10 +931,10 @@ states:
931
931
  - !!python/object:python.hmmwriter.State
932
932
  emissions:
933
933
  probs:
934
- A: 0.036749014910624996
935
- C: 0.036749014910624996
936
- G: 0.036749014910624996
937
- T: 0.889752955268125
934
+ A: 0.0276162271726
935
+ C: 0.0276162271726
936
+ G: 0.0276162271726
937
+ T: 0.9171513184822
938
938
  track: nukes
939
939
  extras:
940
940
  ambiguous_char: N
@@ -946,10 +946,10 @@ states:
946
946
  - !!python/object:python.hmmwriter.State
947
947
  emissions:
948
948
  probs:
949
- A: 0.036749014910624996
950
- C: 0.889752955268125
951
- G: 0.036749014910624996
952
- T: 0.036749014910624996
949
+ A: 0.0276162271726
950
+ C: 0.9171513184822
951
+ G: 0.0276162271726
952
+ T: 0.0276162271726
953
953
  track: nukes
954
954
  extras:
955
955
  ambiguous_char: N
@@ -961,10 +961,10 @@ states:
961
961
  - !!python/object:python.hmmwriter.State
962
962
  emissions:
963
963
  probs:
964
- A: 0.036749014910624996
965
- C: 0.889752955268125
966
- G: 0.036749014910624996
967
- T: 0.036749014910624996
964
+ A: 0.0276162271726
965
+ C: 0.9171513184822
966
+ G: 0.0276162271726
967
+ T: 0.0276162271726
968
968
  track: nukes
969
969
  extras:
970
970
  ambiguous_char: N
@@ -976,10 +976,10 @@ states:
976
976
  - !!python/object:python.hmmwriter.State
977
977
  emissions:
978
978
  probs:
979
- A: 0.036749014910624996
980
- C: 0.036749014910624996
981
- G: 0.036749014910624996
982
- T: 0.889752955268125
979
+ A: 0.0276162271726
980
+ C: 0.0276162271726
981
+ G: 0.0276162271726
982
+ T: 0.9171513184822
983
983
  track: nukes
984
984
  extras:
985
985
  ambiguous_char: N
@@ -991,10 +991,10 @@ states:
991
991
  - !!python/object:python.hmmwriter.State
992
992
  emissions:
993
993
  probs:
994
- A: 0.041249999999999995
995
- C: 0.041249999999999995
996
- G: 0.835
997
- T: 0.08249999999999999
994
+ A: 0.0325
995
+ C: 0.0325
996
+ G: 0.87
997
+ T: 0.065
998
998
  track: nukes
999
999
  extras:
1000
1000
  ambiguous_char: N
@@ -1006,10 +1006,10 @@ states:
1006
1006
  - !!python/object:python.hmmwriter.State
1007
1007
  emissions:
1008
1008
  probs:
1009
- A: 0.036749014910624996
1010
- C: 0.036749014910624996
1011
- G: 0.036749014910624996
1012
- T: 0.889752955268125
1009
+ A: 0.0276162271726
1010
+ C: 0.0276162271726
1011
+ G: 0.0276162271726
1012
+ T: 0.9171513184822
1013
1013
  track: nukes
1014
1014
  extras:
1015
1015
  ambiguous_char: N
@@ -1021,10 +1021,10 @@ states:
1021
1021
  - !!python/object:python.hmmwriter.State
1022
1022
  emissions:
1023
1023
  probs:
1024
- A: 0.036749014910624996
1025
- C: 0.036749014910624996
1026
- G: 0.889752955268125
1027
- T: 0.036749014910624996
1024
+ A: 0.0276162271726
1025
+ C: 0.0276162271726
1026
+ G: 0.9171513184822
1027
+ T: 0.0276162271726
1028
1028
  track: nukes
1029
1029
  extras:
1030
1030
  ambiguous_char: N
@@ -1036,10 +1036,10 @@ states:
1036
1036
  - !!python/object:python.hmmwriter.State
1037
1037
  emissions:
1038
1038
  probs:
1039
- A: 0.036749014910624996
1040
- C: 0.889752955268125
1041
- G: 0.036749014910624996
1042
- T: 0.036749014910624996
1039
+ A: 0.0276162271726
1040
+ C: 0.9171513184822
1041
+ G: 0.0276162271726
1042
+ T: 0.0276162271726
1043
1043
  track: nukes
1044
1044
  extras:
1045
1045
  ambiguous_char: N
@@ -1051,10 +1051,10 @@ states:
1051
1051
  - !!python/object:python.hmmwriter.State
1052
1052
  emissions:
1053
1053
  probs:
1054
- A: 0.889752955268125
1055
- C: 0.036749014910624996
1056
- G: 0.036749014910624996
1057
- T: 0.036749014910624996
1054
+ A: 0.9171513184822
1055
+ C: 0.0276162271726
1056
+ G: 0.0276162271726
1057
+ T: 0.0276162271726
1058
1058
  track: nukes
1059
1059
  extras:
1060
1060
  ambiguous_char: N
@@ -1066,10 +1066,10 @@ states:
1066
1066
  - !!python/object:python.hmmwriter.State
1067
1067
  emissions:
1068
1068
  probs:
1069
- A: 0.036749014910624996
1070
- C: 0.036749014910624996
1071
- G: 0.889752955268125
1072
- T: 0.036749014910624996
1069
+ A: 0.0276162271726
1070
+ C: 0.0276162271726
1071
+ G: 0.9171513184822
1072
+ T: 0.0276162271726
1073
1073
  track: nukes
1074
1074
  extras:
1075
1075
  ambiguous_char: N
@@ -1081,10 +1081,10 @@ states:
1081
1081
  - !!python/object:python.hmmwriter.State
1082
1082
  emissions:
1083
1083
  probs:
1084
- A: 0.036749014910624996
1085
- C: 0.889752955268125
1086
- G: 0.036749014910624996
1087
- T: 0.036749014910624996
1084
+ A: 0.0276162271726
1085
+ C: 0.9171513184822
1086
+ G: 0.0276162271726
1087
+ T: 0.0276162271726
1088
1088
  track: nukes
1089
1089
  extras:
1090
1090
  ambiguous_char: N
@@ -1096,10 +1096,10 @@ states:
1096
1096
  - !!python/object:python.hmmwriter.State
1097
1097
  emissions:
1098
1098
  probs:
1099
- A: 0.036749014910624996
1100
- C: 0.889752955268125
1101
- G: 0.036749014910624996
1102
- T: 0.036749014910624996
1099
+ A: 0.0276162271726
1100
+ C: 0.9171513184822
1101
+ G: 0.0276162271726
1102
+ T: 0.0276162271726
1103
1103
  track: nukes
1104
1104
  extras:
1105
1105
  ambiguous_char: N
@@ -1111,10 +1111,10 @@ states:
1111
1111
  - !!python/object:python.hmmwriter.State
1112
1112
  emissions:
1113
1113
  probs:
1114
- A: 0.036749014910624996
1115
- C: 0.036749014910624996
1116
- G: 0.036749014910624996
1117
- T: 0.889752955268125
1114
+ A: 0.0276162271726
1115
+ C: 0.0276162271726
1116
+ G: 0.0276162271726
1117
+ T: 0.9171513184822
1118
1118
  track: nukes
1119
1119
  extras:
1120
1120
  ambiguous_char: N
@@ -1126,10 +1126,10 @@ states:
1126
1126
  - !!python/object:python.hmmwriter.State
1127
1127
  emissions:
1128
1128
  probs:
1129
- A: 0.036749014910624996
1130
- C: 0.889752955268125
1131
- G: 0.036749014910624996
1132
- T: 0.036749014910624996
1129
+ A: 0.0276162271726
1130
+ C: 0.9171513184822
1131
+ G: 0.0276162271726
1132
+ T: 0.0276162271726
1133
1133
  track: nukes
1134
1134
  extras:
1135
1135
  ambiguous_char: N
@@ -1141,10 +1141,10 @@ states:
1141
1141
  - !!python/object:python.hmmwriter.State
1142
1142
  emissions:
1143
1143
  probs:
1144
- A: 0.036749014910624996
1145
- C: 0.036749014910624996
1146
- G: 0.036749014910624996
1147
- T: 0.889752955268125
1144
+ A: 0.0276162271726
1145
+ C: 0.0276162271726
1146
+ G: 0.0276162271726
1147
+ T: 0.9171513184822
1148
1148
  track: nukes
1149
1149
  extras:
1150
1150
  ambiguous_char: N
@@ -1156,10 +1156,10 @@ states:
1156
1156
  - !!python/object:python.hmmwriter.State
1157
1157
  emissions:
1158
1158
  probs:
1159
- A: 0.036749014910624996
1160
- C: 0.036749014910624996
1161
- G: 0.889752955268125
1162
- T: 0.036749014910624996
1159
+ A: 0.0276162271726
1160
+ C: 0.0276162271726
1161
+ G: 0.9171513184822
1162
+ T: 0.0276162271726
1163
1163
  track: nukes
1164
1164
  extras:
1165
1165
  ambiguous_char: N
@@ -1171,10 +1171,10 @@ states:
1171
1171
  - !!python/object:python.hmmwriter.State
1172
1172
  emissions:
1173
1173
  probs:
1174
- A: 0.036749014910624996
1175
- C: 0.036749014910624996
1176
- G: 0.889752955268125
1177
- T: 0.036749014910624996
1174
+ A: 0.0276162271726
1175
+ C: 0.0276162271726
1176
+ G: 0.9171513184822
1177
+ T: 0.0276162271726
1178
1178
  track: nukes
1179
1179
  extras:
1180
1180
  ambiguous_char: N
@@ -1186,10 +1186,10 @@ states:
1186
1186
  - !!python/object:python.hmmwriter.State
1187
1187
  emissions:
1188
1188
  probs:
1189
- A: 0.889752955268125
1190
- C: 0.036749014910624996
1191
- G: 0.036749014910624996
1192
- T: 0.036749014910624996
1189
+ A: 0.9171513184822
1190
+ C: 0.0276162271726
1191
+ G: 0.0276162271726
1192
+ T: 0.0276162271726
1193
1193
  track: nukes
1194
1194
  extras:
1195
1195
  ambiguous_char: N
@@ -1201,10 +1201,10 @@ states:
1201
1201
  - !!python/object:python.hmmwriter.State
1202
1202
  emissions:
1203
1203
  probs:
1204
- A: 0.036749014910624996
1205
- C: 0.036749014910624996
1206
- G: 0.036749014910624996
1207
- T: 0.889752955268125
1204
+ A: 0.0276162271726
1205
+ C: 0.0276162271726
1206
+ G: 0.0276162271726
1207
+ T: 0.9171513184822
1208
1208
  track: nukes
1209
1209
  extras:
1210
1210
  ambiguous_char: N
@@ -1216,10 +1216,10 @@ states:
1216
1216
  - !!python/object:python.hmmwriter.State
1217
1217
  emissions:
1218
1218
  probs:
1219
- A: 0.036749014910624996
1220
- C: 0.036749014910624996
1221
- G: 0.036749014910624996
1222
- T: 0.889752955268125
1219
+ A: 0.0276162271726
1220
+ C: 0.0276162271726
1221
+ G: 0.0276162271726
1222
+ T: 0.9171513184822
1223
1223
  track: nukes
1224
1224
  extras:
1225
1225
  ambiguous_char: N
@@ -1231,10 +1231,10 @@ states:
1231
1231
  - !!python/object:python.hmmwriter.State
1232
1232
  emissions:
1233
1233
  probs:
1234
- A: 0.036749014910624996
1235
- C: 0.889752955268125
1236
- G: 0.036749014910624996
1237
- T: 0.036749014910624996
1234
+ A: 0.0276162271726
1235
+ C: 0.9171513184822
1236
+ G: 0.0276162271726
1237
+ T: 0.0276162271726
1238
1238
  track: nukes
1239
1239
  extras:
1240
1240
  ambiguous_char: N
@@ -1246,10 +1246,10 @@ states:
1246
1246
  - !!python/object:python.hmmwriter.State
1247
1247
  emissions:
1248
1248
  probs:
1249
- A: 0.889752955268125
1250
- C: 0.036749014910624996
1251
- G: 0.036749014910624996
1252
- T: 0.036749014910624996
1249
+ A: 0.9171513184822
1250
+ C: 0.0276162271726
1251
+ G: 0.0276162271726
1252
+ T: 0.0276162271726
1253
1253
  track: nukes
1254
1254
  extras:
1255
1255
  ambiguous_char: N
@@ -1261,10 +1261,10 @@ states:
1261
1261
  - !!python/object:python.hmmwriter.State
1262
1262
  emissions:
1263
1263
  probs:
1264
- A: 0.036749014910624996
1265
- C: 0.889752955268125
1266
- G: 0.036749014910624996
1267
- T: 0.036749014910624996
1264
+ A: 0.0276162271726
1265
+ C: 0.9171513184822
1266
+ G: 0.0276162271726
1267
+ T: 0.0276162271726
1268
1268
  track: nukes
1269
1269
  extras:
1270
1270
  ambiguous_char: N
@@ -1276,10 +1276,10 @@ states:
1276
1276
  - !!python/object:python.hmmwriter.State
1277
1277
  emissions:
1278
1278
  probs:
1279
- A: 0.036749014910624996
1280
- C: 0.889752955268125
1281
- G: 0.036749014910624996
1282
- T: 0.036749014910624996
1279
+ A: 0.0276162271726
1280
+ C: 0.9171513184822
1281
+ G: 0.0276162271726
1282
+ T: 0.0276162271726
1283
1283
  track: nukes
1284
1284
  extras:
1285
1285
  ambiguous_char: N
@@ -1291,10 +1291,10 @@ states:
1291
1291
  - !!python/object:python.hmmwriter.State
1292
1292
  emissions:
1293
1293
  probs:
1294
- A: 0.036749014910624996
1295
- C: 0.036749014910624996
1296
- G: 0.889752955268125
1297
- T: 0.036749014910624996
1294
+ A: 0.0276162271726
1295
+ C: 0.0276162271726
1296
+ G: 0.9171513184822
1297
+ T: 0.0276162271726
1298
1298
  track: nukes
1299
1299
  extras:
1300
1300
  ambiguous_char: N
@@ -1306,10 +1306,10 @@ states:
1306
1306
  - !!python/object:python.hmmwriter.State
1307
1307
  emissions:
1308
1308
  probs:
1309
- A: 0.036749014910624996
1310
- C: 0.036749014910624996
1311
- G: 0.036749014910624996
1312
- T: 0.889752955268125
1309
+ A: 0.0276162271726
1310
+ C: 0.0276162271726
1311
+ G: 0.0276162271726
1312
+ T: 0.9171513184822
1313
1313
  track: nukes
1314
1314
  extras:
1315
1315
  ambiguous_char: N
@@ -1321,10 +1321,10 @@ states:
1321
1321
  - !!python/object:python.hmmwriter.State
1322
1322
  emissions:
1323
1323
  probs:
1324
- A: 0.036749014910624996
1325
- C: 0.889752955268125
1326
- G: 0.036749014910624996
1327
- T: 0.036749014910624996
1324
+ A: 0.0276162271726
1325
+ C: 0.9171513184822
1326
+ G: 0.0276162271726
1327
+ T: 0.0276162271726
1328
1328
  track: nukes
1329
1329
  extras:
1330
1330
  ambiguous_char: N
@@ -1336,10 +1336,10 @@ states:
1336
1336
  - !!python/object:python.hmmwriter.State
1337
1337
  emissions:
1338
1338
  probs:
1339
- A: 0.889752955268125
1340
- C: 0.036749014910624996
1341
- G: 0.036749014910624996
1342
- T: 0.036749014910624996
1339
+ A: 0.9171513184822
1340
+ C: 0.0276162271726
1341
+ G: 0.0276162271726
1342
+ T: 0.0276162271726
1343
1343
  track: nukes
1344
1344
  extras:
1345
1345
  ambiguous_char: N
@@ -1351,10 +1351,10 @@ states:
1351
1351
  - !!python/object:python.hmmwriter.State
1352
1352
  emissions:
1353
1353
  probs:
1354
- A: 0.036749014910624996
1355
- C: 0.036749014910624996
1356
- G: 0.889752955268125
1357
- T: 0.036749014910624996
1354
+ A: 0.0276162271726
1355
+ C: 0.0276162271726
1356
+ G: 0.9171513184822
1357
+ T: 0.0276162271726
1358
1358
  track: nukes
1359
1359
  extras:
1360
1360
  ambiguous_char: N
@@ -1366,10 +1366,10 @@ states:
1366
1366
  - !!python/object:python.hmmwriter.State
1367
1367
  emissions:
1368
1368
  probs:
1369
- A: 0.036749014910624996
1370
- C: 0.036749014910624996
1371
- G: 0.036749014910624996
1372
- T: 0.889752955268125
1369
+ A: 0.0276162271726
1370
+ C: 0.0276162271726
1371
+ G: 0.0276162271726
1372
+ T: 0.9171513184822
1373
1373
  track: nukes
1374
1374
  extras:
1375
1375
  ambiguous_char: N
@@ -1381,10 +1381,10 @@ states:
1381
1381
  - !!python/object:python.hmmwriter.State
1382
1382
  emissions:
1383
1383
  probs:
1384
- A: 0.889752955268125
1385
- C: 0.036749014910624996
1386
- G: 0.036749014910624996
1387
- T: 0.036749014910624996
1384
+ A: 0.9171513184822
1385
+ C: 0.0276162271726
1386
+ G: 0.0276162271726
1387
+ T: 0.0276162271726
1388
1388
  track: nukes
1389
1389
  extras:
1390
1390
  ambiguous_char: N
@@ -1396,10 +1396,10 @@ states:
1396
1396
  - !!python/object:python.hmmwriter.State
1397
1397
  emissions:
1398
1398
  probs:
1399
- A: 0.036749014910624996
1400
- C: 0.036749014910624996
1401
- G: 0.889752955268125
1402
- T: 0.036749014910624996
1399
+ A: 0.0276162271726
1400
+ C: 0.0276162271726
1401
+ G: 0.9171513184822
1402
+ T: 0.0276162271726
1403
1403
  track: nukes
1404
1404
  extras:
1405
1405
  ambiguous_char: N
@@ -1411,10 +1411,10 @@ states:
1411
1411
  - !!python/object:python.hmmwriter.State
1412
1412
  emissions:
1413
1413
  probs:
1414
- A: 0.036749014910624996
1415
- C: 0.889752955268125
1416
- G: 0.036749014910624996
1417
- T: 0.036749014910624996
1414
+ A: 0.0276162271726
1415
+ C: 0.9171513184822
1416
+ G: 0.0276162271726
1417
+ T: 0.0276162271726
1418
1418
  track: nukes
1419
1419
  extras:
1420
1420
  ambiguous_char: N
@@ -1426,10 +1426,10 @@ states:
1426
1426
  - !!python/object:python.hmmwriter.State
1427
1427
  emissions:
1428
1428
  probs:
1429
- A: 0.889752955268125
1430
- C: 0.036749014910624996
1431
- G: 0.036749014910624996
1432
- T: 0.036749014910624996
1429
+ A: 0.9171513184822
1430
+ C: 0.0276162271726
1431
+ G: 0.0276162271726
1432
+ T: 0.0276162271726
1433
1433
  track: nukes
1434
1434
  extras:
1435
1435
  ambiguous_char: N
@@ -1441,10 +1441,10 @@ states:
1441
1441
  - !!python/object:python.hmmwriter.State
1442
1442
  emissions:
1443
1443
  probs:
1444
- A: 0.889752955268125
1445
- C: 0.036749014910624996
1446
- G: 0.036749014910624996
1447
- T: 0.036749014910624996
1444
+ A: 0.9171513184822
1445
+ C: 0.0276162271726
1446
+ G: 0.0276162271726
1447
+ T: 0.0276162271726
1448
1448
  track: nukes
1449
1449
  extras:
1450
1450
  ambiguous_char: N
@@ -1456,10 +1456,10 @@ states:
1456
1456
  - !!python/object:python.hmmwriter.State
1457
1457
  emissions:
1458
1458
  probs:
1459
- A: 0.036749014910624996
1460
- C: 0.889752955268125
1461
- G: 0.036749014910624996
1462
- T: 0.036749014910624996
1459
+ A: 0.0276162271726
1460
+ C: 0.9171513184822
1461
+ G: 0.0276162271726
1462
+ T: 0.0276162271726
1463
1463
  track: nukes
1464
1464
  extras:
1465
1465
  ambiguous_char: N
@@ -1471,10 +1471,10 @@ states:
1471
1471
  - !!python/object:python.hmmwriter.State
1472
1472
  emissions:
1473
1473
  probs:
1474
- A: 0.036749014910624996
1475
- C: 0.036749014910624996
1476
- G: 0.036749014910624996
1477
- T: 0.889752955268125
1474
+ A: 0.0276162271726
1475
+ C: 0.0276162271726
1476
+ G: 0.0276162271726
1477
+ T: 0.9171513184822
1478
1478
  track: nukes
1479
1479
  extras:
1480
1480
  ambiguous_char: N
@@ -1486,10 +1486,10 @@ states:
1486
1486
  - !!python/object:python.hmmwriter.State
1487
1487
  emissions:
1488
1488
  probs:
1489
- A: 0.889752955268125
1490
- C: 0.036749014910624996
1491
- G: 0.036749014910624996
1492
- T: 0.036749014910624996
1489
+ A: 0.92
1490
+ C: 0.026666666666666665
1491
+ G: 0.026666666666666665
1492
+ T: 0.026666666666666665
1493
1493
  track: nukes
1494
1494
  extras:
1495
1495
  ambiguous_char: N
@@ -1501,10 +1501,10 @@ states:
1501
1501
  - !!python/object:python.hmmwriter.State
1502
1502
  emissions:
1503
1503
  probs:
1504
- A: 0.036749014910624996
1505
- C: 0.889752955268125
1506
- G: 0.036749014910624996
1507
- T: 0.036749014910624996
1504
+ A: 0.0276162271726
1505
+ C: 0.9171513184822
1506
+ G: 0.0276162271726
1507
+ T: 0.0276162271726
1508
1508
  track: nukes
1509
1509
  extras:
1510
1510
  ambiguous_char: N
@@ -1516,10 +1516,10 @@ states:
1516
1516
  - !!python/object:python.hmmwriter.State
1517
1517
  emissions:
1518
1518
  probs:
1519
- A: 0.885
1520
- C: 0.03833333333333333
1521
- G: 0.03833333333333333
1522
- T: 0.03833333333333333
1519
+ A: 0.92
1520
+ C: 0.026666666666666665
1521
+ G: 0.026666666666666665
1522
+ T: 0.026666666666666665
1523
1523
  track: nukes
1524
1524
  extras:
1525
1525
  ambiguous_char: N
@@ -1531,10 +1531,10 @@ states:
1531
1531
  - !!python/object:python.hmmwriter.State
1532
1532
  emissions:
1533
1533
  probs:
1534
- A: 0.036749014910624996
1535
- C: 0.036749014910624996
1536
- G: 0.036749014910624996
1537
- T: 0.889752955268125
1534
+ A: 0.0276162271726
1535
+ C: 0.0276162271726
1536
+ G: 0.0276162271726
1537
+ T: 0.9171513184822
1538
1538
  track: nukes
1539
1539
  extras:
1540
1540
  ambiguous_char: N
@@ -1546,10 +1546,10 @@ states:
1546
1546
  - !!python/object:python.hmmwriter.State
1547
1547
  emissions:
1548
1548
  probs:
1549
- A: 0.036749014910624996
1550
- C: 0.036749014910624996
1551
- G: 0.889752955268125
1552
- T: 0.036749014910624996
1549
+ A: 0.0276162271726
1550
+ C: 0.0276162271726
1551
+ G: 0.9171513184822
1552
+ T: 0.0276162271726
1553
1553
  track: nukes
1554
1554
  extras:
1555
1555
  ambiguous_char: N
@@ -1561,10 +1561,10 @@ states:
1561
1561
  - !!python/object:python.hmmwriter.State
1562
1562
  emissions:
1563
1563
  probs:
1564
- A: 0.889752955268125
1565
- C: 0.036749014910624996
1566
- G: 0.036749014910624996
1567
- T: 0.036749014910624996
1564
+ A: 0.92
1565
+ C: 0.026666666666666665
1566
+ G: 0.026666666666666665
1567
+ T: 0.026666666666666665
1568
1568
  track: nukes
1569
1569
  extras:
1570
1570
  ambiguous_char: N
@@ -1576,10 +1576,10 @@ states:
1576
1576
  - !!python/object:python.hmmwriter.State
1577
1577
  emissions:
1578
1578
  probs:
1579
- A: 0.036749014910624996
1580
- C: 0.036749014910624996
1581
- G: 0.889752955268125
1582
- T: 0.036749014910624996
1579
+ A: 0.0276162271726
1580
+ C: 0.0276162271726
1581
+ G: 0.9171513184822
1582
+ T: 0.0276162271726
1583
1583
  track: nukes
1584
1584
  extras:
1585
1585
  ambiguous_char: N
@@ -1591,10 +1591,10 @@ states:
1591
1591
  - !!python/object:python.hmmwriter.State
1592
1592
  emissions:
1593
1593
  probs:
1594
- A: 0.036749014910624996
1595
- C: 0.889752955268125
1596
- G: 0.036749014910624996
1597
- T: 0.036749014910624996
1594
+ A: 0.0276162271726
1595
+ C: 0.9171513184822
1596
+ G: 0.0276162271726
1597
+ T: 0.0276162271726
1598
1598
  track: nukes
1599
1599
  extras:
1600
1600
  ambiguous_char: N
@@ -1606,10 +1606,10 @@ states:
1606
1606
  - !!python/object:python.hmmwriter.State
1607
1607
  emissions:
1608
1608
  probs:
1609
- A: 0.036749014910624996
1610
- C: 0.036749014910624996
1611
- G: 0.036749014910624996
1612
- T: 0.889752955268125
1609
+ A: 0.0276162271726
1610
+ C: 0.0276162271726
1611
+ G: 0.0276162271726
1612
+ T: 0.9171513184822
1613
1613
  track: nukes
1614
1614
  extras:
1615
1615
  ambiguous_char: N
@@ -1621,10 +1621,10 @@ states:
1621
1621
  - !!python/object:python.hmmwriter.State
1622
1622
  emissions:
1623
1623
  probs:
1624
- A: 0.036749014910624996
1625
- C: 0.036749014910624996
1626
- G: 0.889752955268125
1627
- T: 0.036749014910624996
1624
+ A: 0.0276162271726
1625
+ C: 0.0276162271726
1626
+ G: 0.9171513184822
1627
+ T: 0.0276162271726
1628
1628
  track: nukes
1629
1629
  extras:
1630
1630
  ambiguous_char: N
@@ -1636,10 +1636,10 @@ states:
1636
1636
  - !!python/object:python.hmmwriter.State
1637
1637
  emissions:
1638
1638
  probs:
1639
- A: 0.036749014910624996
1640
- C: 0.036749014910624996
1641
- G: 0.889752955268125
1642
- T: 0.036749014910624996
1639
+ A: 0.0276162271726
1640
+ C: 0.0276162271726
1641
+ G: 0.9171513184822
1642
+ T: 0.0276162271726
1643
1643
  track: nukes
1644
1644
  extras:
1645
1645
  ambiguous_char: N
@@ -1651,10 +1651,10 @@ states:
1651
1651
  - !!python/object:python.hmmwriter.State
1652
1652
  emissions:
1653
1653
  probs:
1654
- A: 0.036749014910624996
1655
- C: 0.036749014910624996
1656
- G: 0.889752955268125
1657
- T: 0.036749014910624996
1654
+ A: 0.0276162271726
1655
+ C: 0.0276162271726
1656
+ G: 0.9171513184822
1657
+ T: 0.0276162271726
1658
1658
  track: nukes
1659
1659
  extras:
1660
1660
  ambiguous_char: N
@@ -1666,10 +1666,10 @@ states:
1666
1666
  - !!python/object:python.hmmwriter.State
1667
1667
  emissions:
1668
1668
  probs:
1669
- A: 0.036749014910624996
1670
- C: 0.036749014910624996
1671
- G: 0.036749014910624996
1672
- T: 0.889752955268125
1669
+ A: 0.0276162271726
1670
+ C: 0.0276162271726
1671
+ G: 0.0276162271726
1672
+ T: 0.9171513184822
1673
1673
  track: nukes
1674
1674
  extras:
1675
1675
  ambiguous_char: N
@@ -1681,10 +1681,10 @@ states:
1681
1681
  - !!python/object:python.hmmwriter.State
1682
1682
  emissions:
1683
1683
  probs:
1684
- A: 0.036749014910624996
1685
- C: 0.889752955268125
1686
- G: 0.036749014910624996
1687
- T: 0.036749014910624996
1684
+ A: 0.0276162271726
1685
+ C: 0.9171513184822
1686
+ G: 0.0276162271726
1687
+ T: 0.0276162271726
1688
1688
  track: nukes
1689
1689
  extras:
1690
1690
  ambiguous_char: N
@@ -1696,10 +1696,10 @@ states:
1696
1696
  - !!python/object:python.hmmwriter.State
1697
1697
  emissions:
1698
1698
  probs:
1699
- A: 0.036749014910624996
1700
- C: 0.889752955268125
1701
- G: 0.036749014910624996
1702
- T: 0.036749014910624996
1699
+ A: 0.0276162271726
1700
+ C: 0.9171513184822
1701
+ G: 0.0276162271726
1702
+ T: 0.0276162271726
1703
1703
  track: nukes
1704
1704
  extras:
1705
1705
  ambiguous_char: N
@@ -1711,10 +1711,10 @@ states:
1711
1711
  - !!python/object:python.hmmwriter.State
1712
1712
  emissions:
1713
1713
  probs:
1714
- A: 0.036749014910624996
1715
- C: 0.036749014910624996
1716
- G: 0.889752955268125
1717
- T: 0.036749014910624996
1714
+ A: 0.0276162271726
1715
+ C: 0.0276162271726
1716
+ G: 0.9171513184822
1717
+ T: 0.0276162271726
1718
1718
  track: nukes
1719
1719
  extras:
1720
1720
  ambiguous_char: N
@@ -1726,10 +1726,10 @@ states:
1726
1726
  - !!python/object:python.hmmwriter.State
1727
1727
  emissions:
1728
1728
  probs:
1729
- A: 0.036749014910624996
1730
- C: 0.889752955268125
1731
- G: 0.036749014910624996
1732
- T: 0.036749014910624996
1729
+ A: 0.0276162271726
1730
+ C: 0.9171513184822
1731
+ G: 0.0276162271726
1732
+ T: 0.0276162271726
1733
1733
  track: nukes
1734
1734
  extras:
1735
1735
  ambiguous_char: N
@@ -1741,10 +1741,10 @@ states:
1741
1741
  - !!python/object:python.hmmwriter.State
1742
1742
  emissions:
1743
1743
  probs:
1744
- A: 0.036749014910624996
1745
- C: 0.889752955268125
1746
- G: 0.036749014910624996
1747
- T: 0.036749014910624996
1744
+ A: 0.0276162271726
1745
+ C: 0.9171513184822
1746
+ G: 0.0276162271726
1747
+ T: 0.0276162271726
1748
1748
  track: nukes
1749
1749
  extras:
1750
1750
  ambiguous_char: N
@@ -1756,10 +1756,10 @@ states:
1756
1756
  - !!python/object:python.hmmwriter.State
1757
1757
  emissions:
1758
1758
  probs:
1759
- A: 0.889752955268125
1760
- C: 0.036749014910624996
1761
- G: 0.036749014910624996
1762
- T: 0.036749014910624996
1759
+ A: 0.9171513184822
1760
+ C: 0.0276162271726
1761
+ G: 0.0276162271726
1762
+ T: 0.0276162271726
1763
1763
  track: nukes
1764
1764
  extras:
1765
1765
  ambiguous_char: N
@@ -1771,10 +1771,10 @@ states:
1771
1771
  - !!python/object:python.hmmwriter.State
1772
1772
  emissions:
1773
1773
  probs:
1774
- A: 0.036749014910624996
1775
- C: 0.036749014910624996
1776
- G: 0.889752955268125
1777
- T: 0.036749014910624996
1774
+ A: 0.0276162271726
1775
+ C: 0.0276162271726
1776
+ G: 0.9171513184822
1777
+ T: 0.0276162271726
1778
1778
  track: nukes
1779
1779
  extras:
1780
1780
  ambiguous_char: N
@@ -1786,10 +1786,10 @@ states:
1786
1786
  - !!python/object:python.hmmwriter.State
1787
1787
  emissions:
1788
1788
  probs:
1789
- A: 0.036749014910624996
1790
- C: 0.036749014910624996
1791
- G: 0.889752955268125
1792
- T: 0.036749014910624996
1789
+ A: 0.0276162271726
1790
+ C: 0.0276162271726
1791
+ G: 0.9171513184822
1792
+ T: 0.0276162271726
1793
1793
  track: nukes
1794
1794
  extras:
1795
1795
  ambiguous_char: N
@@ -1801,10 +1801,10 @@ states:
1801
1801
  - !!python/object:python.hmmwriter.State
1802
1802
  emissions:
1803
1803
  probs:
1804
- A: 0.036749014910624996
1805
- C: 0.889752955268125
1806
- G: 0.036749014910624996
1807
- T: 0.036749014910624996
1804
+ A: 0.0276162271726
1805
+ C: 0.9171513184822
1806
+ G: 0.0276162271726
1807
+ T: 0.0276162271726
1808
1808
  track: nukes
1809
1809
  extras:
1810
1810
  ambiguous_char: N
@@ -1816,10 +1816,10 @@ states:
1816
1816
  - !!python/object:python.hmmwriter.State
1817
1817
  emissions:
1818
1818
  probs:
1819
- A: 0.036749014910624996
1820
- C: 0.036749014910624996
1821
- G: 0.036749014910624996
1822
- T: 0.889752955268125
1819
+ A: 0.0276162271726
1820
+ C: 0.0276162271726
1821
+ G: 0.0276162271726
1822
+ T: 0.9171513184822
1823
1823
  track: nukes
1824
1824
  extras:
1825
1825
  ambiguous_char: N
@@ -1831,10 +1831,10 @@ states:
1831
1831
  - !!python/object:python.hmmwriter.State
1832
1832
  emissions:
1833
1833
  probs:
1834
- A: 0.036749014910624996
1835
- C: 0.889752955268125
1836
- G: 0.036749014910624996
1837
- T: 0.036749014910624996
1834
+ A: 0.0276162271726
1835
+ C: 0.9171513184822
1836
+ G: 0.0276162271726
1837
+ T: 0.0276162271726
1838
1838
  track: nukes
1839
1839
  extras:
1840
1840
  ambiguous_char: N
@@ -1846,10 +1846,10 @@ states:
1846
1846
  - !!python/object:python.hmmwriter.State
1847
1847
  emissions:
1848
1848
  probs:
1849
- A: 0.036749014910624996
1850
- C: 0.889752955268125
1851
- G: 0.036749014910624996
1852
- T: 0.036749014910624996
1849
+ A: 0.0276162271726
1850
+ C: 0.9171513184822
1851
+ G: 0.0276162271726
1852
+ T: 0.0276162271726
1853
1853
  track: nukes
1854
1854
  extras:
1855
1855
  ambiguous_char: N
@@ -1861,10 +1861,10 @@ states:
1861
1861
  - !!python/object:python.hmmwriter.State
1862
1862
  emissions:
1863
1863
  probs:
1864
- A: 0.889752955268125
1865
- C: 0.036749014910624996
1866
- G: 0.036749014910624996
1867
- T: 0.036749014910624996
1864
+ A: 0.9171513184822
1865
+ C: 0.0276162271726
1866
+ G: 0.0276162271726
1867
+ T: 0.0276162271726
1868
1868
  track: nukes
1869
1869
  extras:
1870
1870
  ambiguous_char: N
@@ -1876,10 +1876,10 @@ states:
1876
1876
  - !!python/object:python.hmmwriter.State
1877
1877
  emissions:
1878
1878
  probs:
1879
- A: 0.036749014910624996
1880
- C: 0.036749014910624996
1881
- G: 0.889752955268125
1882
- T: 0.036749014910624996
1879
+ A: 0.043333333333333335
1880
+ C: 0.043333333333333335
1881
+ G: 0.87
1882
+ T: 0.043333333333333335
1883
1883
  track: nukes
1884
1884
  extras:
1885
1885
  ambiguous_char: N
@@ -1891,10 +1891,10 @@ states:
1891
1891
  - !!python/object:python.hmmwriter.State
1892
1892
  emissions:
1893
1893
  probs:
1894
- A: 0.036749014910624996
1895
- C: 0.036749014910624996
1896
- G: 0.889752955268125
1897
- T: 0.036749014910624996
1894
+ A: 0.0276162271726
1895
+ C: 0.0276162271726
1896
+ G: 0.9171513184822
1897
+ T: 0.0276162271726
1898
1898
  track: nukes
1899
1899
  extras:
1900
1900
  ambiguous_char: N
@@ -1906,10 +1906,10 @@ states:
1906
1906
  - !!python/object:python.hmmwriter.State
1907
1907
  emissions:
1908
1908
  probs:
1909
- A: 0.036749014910624996
1910
- C: 0.036749014910624996
1911
- G: 0.889752955268125
1912
- T: 0.036749014910624996
1909
+ A: 0.0276162271726
1910
+ C: 0.0276162271726
1911
+ G: 0.9171513184822
1912
+ T: 0.0276162271726
1913
1913
  track: nukes
1914
1914
  extras:
1915
1915
  ambiguous_char: N
@@ -1921,10 +1921,10 @@ states:
1921
1921
  - !!python/object:python.hmmwriter.State
1922
1922
  emissions:
1923
1923
  probs:
1924
- A: 0.889752955268125
1925
- C: 0.036749014910624996
1926
- G: 0.036749014910624996
1927
- T: 0.036749014910624996
1924
+ A: 0.92
1925
+ C: 0.026666666666666665
1926
+ G: 0.026666666666666665
1927
+ T: 0.026666666666666665
1928
1928
  track: nukes
1929
1929
  extras:
1930
1930
  ambiguous_char: N
@@ -1936,10 +1936,10 @@ states:
1936
1936
  - !!python/object:python.hmmwriter.State
1937
1937
  emissions:
1938
1938
  probs:
1939
- A: 0.889752955268125
1940
- C: 0.036749014910624996
1941
- G: 0.036749014910624996
1942
- T: 0.036749014910624996
1939
+ A: 0.9171513184822
1940
+ C: 0.0276162271726
1941
+ G: 0.0276162271726
1942
+ T: 0.0276162271726
1943
1943
  track: nukes
1944
1944
  extras:
1945
1945
  ambiguous_char: N
@@ -1951,10 +1951,10 @@ states:
1951
1951
  - !!python/object:python.hmmwriter.State
1952
1952
  emissions:
1953
1953
  probs:
1954
- A: 0.036749014910624996
1955
- C: 0.036749014910624996
1956
- G: 0.889752955268125
1957
- T: 0.036749014910624996
1954
+ A: 0.0276162271726
1955
+ C: 0.0276162271726
1956
+ G: 0.9171513184822
1957
+ T: 0.0276162271726
1958
1958
  track: nukes
1959
1959
  extras:
1960
1960
  ambiguous_char: N
@@ -1966,10 +1966,10 @@ states:
1966
1966
  - !!python/object:python.hmmwriter.State
1967
1967
  emissions:
1968
1968
  probs:
1969
- A: 0.036749014910624996
1970
- C: 0.036749014910624996
1971
- G: 0.889752955268125
1972
- T: 0.036749014910624996
1969
+ A: 0.0276162271726
1970
+ C: 0.0276162271726
1971
+ G: 0.9171513184822
1972
+ T: 0.0276162271726
1973
1973
  track: nukes
1974
1974
  extras:
1975
1975
  ambiguous_char: N
@@ -1981,10 +1981,10 @@ states:
1981
1981
  - !!python/object:python.hmmwriter.State
1982
1982
  emissions:
1983
1983
  probs:
1984
- A: 0.036749014910624996
1985
- C: 0.036749014910624996
1986
- G: 0.889752955268125
1987
- T: 0.036749014910624996
1984
+ A: 0.0276162271726
1985
+ C: 0.0276162271726
1986
+ G: 0.9171513184822
1987
+ T: 0.0276162271726
1988
1988
  track: nukes
1989
1989
  extras:
1990
1990
  ambiguous_char: N
@@ -1996,10 +1996,10 @@ states:
1996
1996
  - !!python/object:python.hmmwriter.State
1997
1997
  emissions:
1998
1998
  probs:
1999
- A: 0.03833333333333333
2000
- C: 0.03833333333333333
2001
- G: 0.885
2002
- T: 0.03833333333333333
1999
+ A: 0.026666666666666665
2000
+ C: 0.026666666666666665
2001
+ G: 0.92
2002
+ T: 0.026666666666666665
2003
2003
  track: nukes
2004
2004
  extras:
2005
2005
  ambiguous_char: N
@@ -2011,10 +2011,10 @@ states:
2011
2011
  - !!python/object:python.hmmwriter.State
2012
2012
  emissions:
2013
2013
  probs:
2014
- A: 0.036749014910624996
2015
- C: 0.889752955268125
2016
- G: 0.036749014910624996
2017
- T: 0.036749014910624996
2014
+ A: 0.0276162271726
2015
+ C: 0.9171513184822
2016
+ G: 0.0276162271726
2017
+ T: 0.0276162271726
2018
2018
  track: nukes
2019
2019
  extras:
2020
2020
  ambiguous_char: N
@@ -2026,10 +2026,10 @@ states:
2026
2026
  - !!python/object:python.hmmwriter.State
2027
2027
  emissions:
2028
2028
  probs:
2029
- A: 0.036749014910624996
2030
- C: 0.036749014910624996
2031
- G: 0.036749014910624996
2032
- T: 0.889752955268125
2029
+ A: 0.0276162271726
2030
+ C: 0.0276162271726
2031
+ G: 0.0276162271726
2032
+ T: 0.9171513184822
2033
2033
  track: nukes
2034
2034
  extras:
2035
2035
  ambiguous_char: N
@@ -2041,10 +2041,10 @@ states:
2041
2041
  - !!python/object:python.hmmwriter.State
2042
2042
  emissions:
2043
2043
  probs:
2044
- A: 0.036749014910624996
2045
- C: 0.036749014910624996
2046
- G: 0.889752955268125
2047
- T: 0.036749014910624996
2044
+ A: 0.0276162271726
2045
+ C: 0.0276162271726
2046
+ G: 0.9171513184822
2047
+ T: 0.0276162271726
2048
2048
  track: nukes
2049
2049
  extras:
2050
2050
  ambiguous_char: N
@@ -2056,10 +2056,10 @@ states:
2056
2056
  - !!python/object:python.hmmwriter.State
2057
2057
  emissions:
2058
2058
  probs:
2059
- A: 0.036749014910624996
2060
- C: 0.036749014910624996
2061
- G: 0.889752955268125
2062
- T: 0.036749014910624996
2059
+ A: 0.0276162271726
2060
+ C: 0.0276162271726
2061
+ G: 0.9171513184822
2062
+ T: 0.0276162271726
2063
2063
  track: nukes
2064
2064
  extras:
2065
2065
  ambiguous_char: N
@@ -2071,10 +2071,10 @@ states:
2071
2071
  - !!python/object:python.hmmwriter.State
2072
2072
  emissions:
2073
2073
  probs:
2074
- A: 0.889752955268125
2075
- C: 0.036749014910624996
2076
- G: 0.036749014910624996
2077
- T: 0.036749014910624996
2074
+ A: 0.9171513184822
2075
+ C: 0.0276162271726
2076
+ G: 0.0276162271726
2077
+ T: 0.0276162271726
2078
2078
  track: nukes
2079
2079
  extras:
2080
2080
  ambiguous_char: N
@@ -2086,10 +2086,10 @@ states:
2086
2086
  - !!python/object:python.hmmwriter.State
2087
2087
  emissions:
2088
2088
  probs:
2089
- A: 0.036749014910624996
2090
- C: 0.036749014910624996
2091
- G: 0.889752955268125
2092
- T: 0.036749014910624996
2089
+ A: 0.0276162271726
2090
+ C: 0.0276162271726
2091
+ G: 0.9171513184822
2092
+ T: 0.0276162271726
2093
2093
  track: nukes
2094
2094
  extras:
2095
2095
  ambiguous_char: N
@@ -2101,10 +2101,10 @@ states:
2101
2101
  - !!python/object:python.hmmwriter.State
2102
2102
  emissions:
2103
2103
  probs:
2104
- A: 0.036749014910624996
2105
- C: 0.036749014910624996
2106
- G: 0.036749014910624996
2107
- T: 0.889752955268125
2104
+ A: 0.0276162271726
2105
+ C: 0.0276162271726
2106
+ G: 0.0276162271726
2107
+ T: 0.9171513184822
2108
2108
  track: nukes
2109
2109
  extras:
2110
2110
  ambiguous_char: N
@@ -2116,10 +2116,10 @@ states:
2116
2116
  - !!python/object:python.hmmwriter.State
2117
2117
  emissions:
2118
2118
  probs:
2119
- A: 0.036749014910624996
2120
- C: 0.036749014910624996
2121
- G: 0.889752955268125
2122
- T: 0.036749014910624996
2119
+ A: 0.0276162271726
2120
+ C: 0.0276162271726
2121
+ G: 0.9171513184822
2122
+ T: 0.0276162271726
2123
2123
  track: nukes
2124
2124
  extras:
2125
2125
  ambiguous_char: N
@@ -2131,10 +2131,10 @@ states:
2131
2131
  - !!python/object:python.hmmwriter.State
2132
2132
  emissions:
2133
2133
  probs:
2134
- A: 0.036749014910624996
2135
- C: 0.036749014910624996
2136
- G: 0.889752955268125
2137
- T: 0.036749014910624996
2134
+ A: 0.0276162271726
2135
+ C: 0.0276162271726
2136
+ G: 0.9171513184822
2137
+ T: 0.0276162271726
2138
2138
  track: nukes
2139
2139
  extras:
2140
2140
  ambiguous_char: N
@@ -2146,10 +2146,10 @@ states:
2146
2146
  - !!python/object:python.hmmwriter.State
2147
2147
  emissions:
2148
2148
  probs:
2149
- A: 0.036749014910624996
2150
- C: 0.036749014910624996
2151
- G: 0.889752955268125
2152
- T: 0.036749014910624996
2149
+ A: 0.0276162271726
2150
+ C: 0.0276162271726
2151
+ G: 0.9171513184822
2152
+ T: 0.0276162271726
2153
2153
  track: nukes
2154
2154
  extras:
2155
2155
  ambiguous_char: N
@@ -2161,10 +2161,10 @@ states:
2161
2161
  - !!python/object:python.hmmwriter.State
2162
2162
  emissions:
2163
2163
  probs:
2164
- A: 0.036749014910624996
2165
- C: 0.036749014910624996
2166
- G: 0.036749014910624996
2167
- T: 0.889752955268125
2164
+ A: 0.0276162271726
2165
+ C: 0.0276162271726
2166
+ G: 0.0276162271726
2167
+ T: 0.9171513184822
2168
2168
  track: nukes
2169
2169
  extras:
2170
2170
  ambiguous_char: N
@@ -2176,10 +2176,10 @@ states:
2176
2176
  - !!python/object:python.hmmwriter.State
2177
2177
  emissions:
2178
2178
  probs:
2179
- A: 0.036749014910624996
2180
- C: 0.889752955268125
2181
- G: 0.036749014910624996
2182
- T: 0.036749014910624996
2179
+ A: 0.0276162271726
2180
+ C: 0.9171513184822
2181
+ G: 0.0276162271726
2182
+ T: 0.0276162271726
2183
2183
  track: nukes
2184
2184
  extras:
2185
2185
  ambiguous_char: N
@@ -2191,10 +2191,10 @@ states:
2191
2191
  - !!python/object:python.hmmwriter.State
2192
2192
  emissions:
2193
2193
  probs:
2194
- A: 0.036749014910624996
2195
- C: 0.036749014910624996
2196
- G: 0.036749014910624996
2197
- T: 0.889752955268125
2194
+ A: 0.0276162271726
2195
+ C: 0.0276162271726
2196
+ G: 0.0276162271726
2197
+ T: 0.9171513184822
2198
2198
  track: nukes
2199
2199
  extras:
2200
2200
  ambiguous_char: N
@@ -2206,10 +2206,10 @@ states:
2206
2206
  - !!python/object:python.hmmwriter.State
2207
2207
  emissions:
2208
2208
  probs:
2209
- A: 0.08249999999999999
2210
- C: 0.835
2211
- G: 0.041249999999999995
2212
- T: 0.041249999999999995
2209
+ A: 0.065
2210
+ C: 0.87
2211
+ G: 0.0325
2212
+ T: 0.0325
2213
2213
  track: nukes
2214
2214
  extras:
2215
2215
  ambiguous_char: N
@@ -2221,10 +2221,10 @@ states:
2221
2221
  - !!python/object:python.hmmwriter.State
2222
2222
  emissions:
2223
2223
  probs:
2224
- A: 0.889752955268125
2225
- C: 0.036749014910624996
2226
- G: 0.036749014910624996
2227
- T: 0.036749014910624996
2224
+ A: 0.9171513184822
2225
+ C: 0.0276162271726
2226
+ G: 0.0276162271726
2227
+ T: 0.0276162271726
2228
2228
  track: nukes
2229
2229
  extras:
2230
2230
  ambiguous_char: N
@@ -2236,10 +2236,10 @@ states:
2236
2236
  - !!python/object:python.hmmwriter.State
2237
2237
  emissions:
2238
2238
  probs:
2239
- A: 0.036749014910624996
2240
- C: 0.036749014910624996
2241
- G: 0.889752955268125
2242
- T: 0.036749014910624996
2239
+ A: 0.0276162271726
2240
+ C: 0.0276162271726
2241
+ G: 0.9171513184822
2242
+ T: 0.0276162271726
2243
2243
  track: nukes
2244
2244
  extras:
2245
2245
  ambiguous_char: N
@@ -2251,10 +2251,10 @@ states:
2251
2251
  - !!python/object:python.hmmwriter.State
2252
2252
  emissions:
2253
2253
  probs:
2254
- A: 0.036749014910624996
2255
- C: 0.036749014910624996
2256
- G: 0.036749014910624996
2257
- T: 0.889752955268125
2254
+ A: 0.0276162271726
2255
+ C: 0.0276162271726
2256
+ G: 0.0276162271726
2257
+ T: 0.9171513184822
2258
2258
  track: nukes
2259
2259
  extras:
2260
2260
  ambiguous_char: N
@@ -2266,10 +2266,10 @@ states:
2266
2266
  - !!python/object:python.hmmwriter.State
2267
2267
  emissions:
2268
2268
  probs:
2269
- A: 0.036749014910624996
2270
- C: 0.036749014910624996
2271
- G: 0.036749014910624996
2272
- T: 0.889752955268125
2269
+ A: 0.0276162271726
2270
+ C: 0.0276162271726
2271
+ G: 0.0276162271726
2272
+ T: 0.9171513184822
2273
2273
  track: nukes
2274
2274
  extras:
2275
2275
  ambiguous_char: N
@@ -2281,10 +2281,10 @@ states:
2281
2281
  - !!python/object:python.hmmwriter.State
2282
2282
  emissions:
2283
2283
  probs:
2284
- A: 0.889752955268125
2285
- C: 0.036749014910624996
2286
- G: 0.036749014910624996
2287
- T: 0.036749014910624996
2284
+ A: 0.9171513184822
2285
+ C: 0.0276162271726
2286
+ G: 0.0276162271726
2287
+ T: 0.0276162271726
2288
2288
  track: nukes
2289
2289
  extras:
2290
2290
  ambiguous_char: N
@@ -2296,10 +2296,10 @@ states:
2296
2296
  - !!python/object:python.hmmwriter.State
2297
2297
  emissions:
2298
2298
  probs:
2299
- A: 0.036749014910624996
2300
- C: 0.036749014910624996
2301
- G: 0.036749014910624996
2302
- T: 0.889752955268125
2299
+ A: 0.0276162271726
2300
+ C: 0.0276162271726
2301
+ G: 0.0276162271726
2302
+ T: 0.9171513184822
2303
2303
  track: nukes
2304
2304
  extras:
2305
2305
  ambiguous_char: N
@@ -2311,10 +2311,10 @@ states:
2311
2311
  - !!python/object:python.hmmwriter.State
2312
2312
  emissions:
2313
2313
  probs:
2314
- A: 0.036749014910624996
2315
- C: 0.036749014910624996
2316
- G: 0.036749014910624996
2317
- T: 0.889752955268125
2314
+ A: 0.0276162271726
2315
+ C: 0.0276162271726
2316
+ G: 0.0276162271726
2317
+ T: 0.9171513184822
2318
2318
  track: nukes
2319
2319
  extras:
2320
2320
  ambiguous_char: N
@@ -2326,10 +2326,10 @@ states:
2326
2326
  - !!python/object:python.hmmwriter.State
2327
2327
  emissions:
2328
2328
  probs:
2329
- A: 0.036749014910624996
2330
- C: 0.036749014910624996
2331
- G: 0.036749014910624996
2332
- T: 0.889752955268125
2329
+ A: 0.0276162271726
2330
+ C: 0.0276162271726
2331
+ G: 0.0276162271726
2332
+ T: 0.9171513184822
2333
2333
  track: nukes
2334
2334
  extras:
2335
2335
  ambiguous_char: N
@@ -2341,10 +2341,10 @@ states:
2341
2341
  - !!python/object:python.hmmwriter.State
2342
2342
  emissions:
2343
2343
  probs:
2344
- A: 0.889752955268125
2345
- C: 0.036749014910624996
2346
- G: 0.036749014910624996
2347
- T: 0.036749014910624996
2344
+ A: 0.9171513184822
2345
+ C: 0.0276162271726
2346
+ G: 0.0276162271726
2347
+ T: 0.0276162271726
2348
2348
  track: nukes
2349
2349
  extras:
2350
2350
  ambiguous_char: N
@@ -2356,10 +2356,10 @@ states:
2356
2356
  - !!python/object:python.hmmwriter.State
2357
2357
  emissions:
2358
2358
  probs:
2359
- A: 0.036749014910624996
2360
- C: 0.036749014910624996
2361
- G: 0.036749014910624996
2362
- T: 0.889752955268125
2359
+ A: 0.0276162271726
2360
+ C: 0.0276162271726
2361
+ G: 0.0276162271726
2362
+ T: 0.9171513184822
2363
2363
  track: nukes
2364
2364
  extras:
2365
2365
  ambiguous_char: N
@@ -2371,10 +2371,10 @@ states:
2371
2371
  - !!python/object:python.hmmwriter.State
2372
2372
  emissions:
2373
2373
  probs:
2374
- A: 0.889752955268125
2375
- C: 0.036749014910624996
2376
- G: 0.036749014910624996
2377
- T: 0.036749014910624996
2374
+ A: 0.9171513184822
2375
+ C: 0.0276162271726
2376
+ G: 0.0276162271726
2377
+ T: 0.0276162271726
2378
2378
  track: nukes
2379
2379
  extras:
2380
2380
  ambiguous_char: N
@@ -2386,10 +2386,10 @@ states:
2386
2386
  - !!python/object:python.hmmwriter.State
2387
2387
  emissions:
2388
2388
  probs:
2389
- A: 0.036749014910624996
2390
- C: 0.036749014910624996
2391
- G: 0.889752955268125
2392
- T: 0.036749014910624996
2389
+ A: 0.0276162271726
2390
+ C: 0.0276162271726
2391
+ G: 0.9171513184822
2392
+ T: 0.0276162271726
2393
2393
  track: nukes
2394
2394
  extras:
2395
2395
  ambiguous_char: N
@@ -2401,10 +2401,10 @@ states:
2401
2401
  - !!python/object:python.hmmwriter.State
2402
2402
  emissions:
2403
2403
  probs:
2404
- A: 0.03833333333333333
2405
- C: 0.885
2406
- G: 0.03833333333333333
2407
- T: 0.03833333333333333
2404
+ A: 0.026666666666666665
2405
+ C: 0.92
2406
+ G: 0.026666666666666665
2407
+ T: 0.026666666666666665
2408
2408
  track: nukes
2409
2409
  extras:
2410
2410
  ambiguous_char: N
@@ -2416,10 +2416,10 @@ states:
2416
2416
  - !!python/object:python.hmmwriter.State
2417
2417
  emissions:
2418
2418
  probs:
2419
- A: 0.036749014910624996
2420
- C: 0.036749014910624996
2421
- G: 0.889752955268125
2422
- T: 0.036749014910624996
2419
+ A: 0.0276162271726
2420
+ C: 0.0276162271726
2421
+ G: 0.9171513184822
2422
+ T: 0.0276162271726
2423
2423
  track: nukes
2424
2424
  extras:
2425
2425
  ambiguous_char: N
@@ -2431,10 +2431,10 @@ states:
2431
2431
  - !!python/object:python.hmmwriter.State
2432
2432
  emissions:
2433
2433
  probs:
2434
- A: 0.036749014910624996
2435
- C: 0.036749014910624996
2436
- G: 0.889752955268125
2437
- T: 0.036749014910624996
2434
+ A: 0.0276162271726
2435
+ C: 0.0276162271726
2436
+ G: 0.9171513184822
2437
+ T: 0.0276162271726
2438
2438
  track: nukes
2439
2439
  extras:
2440
2440
  ambiguous_char: N
@@ -2446,10 +2446,10 @@ states:
2446
2446
  - !!python/object:python.hmmwriter.State
2447
2447
  emissions:
2448
2448
  probs:
2449
- A: 0.036749014910624996
2450
- C: 0.036749014910624996
2451
- G: 0.036749014910624996
2452
- T: 0.889752955268125
2449
+ A: 0.0276162271726
2450
+ C: 0.0276162271726
2451
+ G: 0.0276162271726
2452
+ T: 0.9171513184822
2453
2453
  track: nukes
2454
2454
  extras:
2455
2455
  ambiguous_char: N
@@ -2461,10 +2461,10 @@ states:
2461
2461
  - !!python/object:python.hmmwriter.State
2462
2462
  emissions:
2463
2463
  probs:
2464
- A: 0.036749014910624996
2465
- C: 0.036749014910624996
2466
- G: 0.889752955268125
2467
- T: 0.036749014910624996
2464
+ A: 0.0276162271726
2465
+ C: 0.0276162271726
2466
+ G: 0.9171513184822
2467
+ T: 0.0276162271726
2468
2468
  track: nukes
2469
2469
  extras:
2470
2470
  ambiguous_char: N
@@ -2476,10 +2476,10 @@ states:
2476
2476
  - !!python/object:python.hmmwriter.State
2477
2477
  emissions:
2478
2478
  probs:
2479
- A: 0.036749014910624996
2480
- C: 0.036749014910624996
2481
- G: 0.889752955268125
2482
- T: 0.036749014910624996
2479
+ A: 0.0276162271726
2480
+ C: 0.0276162271726
2481
+ G: 0.9171513184822
2482
+ T: 0.0276162271726
2483
2483
  track: nukes
2484
2484
  extras:
2485
2485
  ambiguous_char: N
@@ -2491,10 +2491,10 @@ states:
2491
2491
  - !!python/object:python.hmmwriter.State
2492
2492
  emissions:
2493
2493
  probs:
2494
- A: 0.036749014910624996
2495
- C: 0.036749014910624996
2496
- G: 0.036749014910624996
2497
- T: 0.889752955268125
2494
+ A: 0.0276162271726
2495
+ C: 0.0276162271726
2496
+ G: 0.0276162271726
2497
+ T: 0.9171513184822
2498
2498
  track: nukes
2499
2499
  extras:
2500
2500
  ambiguous_char: N
@@ -2506,10 +2506,10 @@ states:
2506
2506
  - !!python/object:python.hmmwriter.State
2507
2507
  emissions:
2508
2508
  probs:
2509
- A: 0.889752955268125
2510
- C: 0.036749014910624996
2511
- G: 0.036749014910624996
2512
- T: 0.036749014910624996
2509
+ A: 0.9171513184822
2510
+ C: 0.0276162271726
2511
+ G: 0.0276162271726
2512
+ T: 0.0276162271726
2513
2513
  track: nukes
2514
2514
  extras:
2515
2515
  ambiguous_char: N
@@ -2521,10 +2521,10 @@ states:
2521
2521
  - !!python/object:python.hmmwriter.State
2522
2522
  emissions:
2523
2523
  probs:
2524
- A: 0.036749014910624996
2525
- C: 0.036749014910624996
2526
- G: 0.889752955268125
2527
- T: 0.036749014910624996
2524
+ A: 0.0276162271726
2525
+ C: 0.0276162271726
2526
+ G: 0.9171513184822
2527
+ T: 0.0276162271726
2528
2528
  track: nukes
2529
2529
  extras:
2530
2530
  ambiguous_char: N
@@ -2536,10 +2536,10 @@ states:
2536
2536
  - !!python/object:python.hmmwriter.State
2537
2537
  emissions:
2538
2538
  probs:
2539
- A: 0.036749014910624996
2540
- C: 0.889752955268125
2541
- G: 0.036749014910624996
2542
- T: 0.036749014910624996
2539
+ A: 0.0276162271726
2540
+ C: 0.9171513184822
2541
+ G: 0.0276162271726
2542
+ T: 0.0276162271726
2543
2543
  track: nukes
2544
2544
  extras:
2545
2545
  ambiguous_char: N
@@ -2551,10 +2551,10 @@ states:
2551
2551
  - !!python/object:python.hmmwriter.State
2552
2552
  emissions:
2553
2553
  probs:
2554
- A: 0.889752955268125
2555
- C: 0.036749014910624996
2556
- G: 0.036749014910624996
2557
- T: 0.036749014910624996
2554
+ A: 0.9171513184822
2555
+ C: 0.0276162271726
2556
+ G: 0.0276162271726
2557
+ T: 0.0276162271726
2558
2558
  track: nukes
2559
2559
  extras:
2560
2560
  ambiguous_char: N
@@ -2566,10 +2566,10 @@ states:
2566
2566
  - !!python/object:python.hmmwriter.State
2567
2567
  emissions:
2568
2568
  probs:
2569
- A: 0.036749014910624996
2570
- C: 0.889752955268125
2571
- G: 0.036749014910624996
2572
- T: 0.036749014910624996
2569
+ A: 0.0276162271726
2570
+ C: 0.9171513184822
2571
+ G: 0.0276162271726
2572
+ T: 0.0276162271726
2573
2573
  track: nukes
2574
2574
  extras:
2575
2575
  ambiguous_char: N
@@ -2581,10 +2581,10 @@ states:
2581
2581
  - !!python/object:python.hmmwriter.State
2582
2582
  emissions:
2583
2583
  probs:
2584
- A: 0.889752955268125
2585
- C: 0.036749014910624996
2586
- G: 0.036749014910624996
2587
- T: 0.036749014910624996
2584
+ A: 0.9171513184822
2585
+ C: 0.0276162271726
2586
+ G: 0.0276162271726
2587
+ T: 0.0276162271726
2588
2588
  track: nukes
2589
2589
  extras:
2590
2590
  ambiguous_char: N
@@ -2596,10 +2596,10 @@ states:
2596
2596
  - !!python/object:python.hmmwriter.State
2597
2597
  emissions:
2598
2598
  probs:
2599
- A: 0.036749014910624996
2600
- C: 0.036749014910624996
2601
- G: 0.036749014910624996
2602
- T: 0.889752955268125
2599
+ A: 0.0276162271726
2600
+ C: 0.0276162271726
2601
+ G: 0.0276162271726
2602
+ T: 0.9171513184822
2603
2603
  track: nukes
2604
2604
  extras:
2605
2605
  ambiguous_char: N
@@ -2611,10 +2611,10 @@ states:
2611
2611
  - !!python/object:python.hmmwriter.State
2612
2612
  emissions:
2613
2613
  probs:
2614
- A: 0.889752955268125
2615
- C: 0.036749014910624996
2616
- G: 0.036749014910624996
2617
- T: 0.036749014910624996
2614
+ A: 0.9171513184822
2615
+ C: 0.0276162271726
2616
+ G: 0.0276162271726
2617
+ T: 0.0276162271726
2618
2618
  track: nukes
2619
2619
  extras:
2620
2620
  ambiguous_char: N
@@ -2626,10 +2626,10 @@ states:
2626
2626
  - !!python/object:python.hmmwriter.State
2627
2627
  emissions:
2628
2628
  probs:
2629
- A: 0.036749014910624996
2630
- C: 0.889752955268125
2631
- G: 0.036749014910624996
2632
- T: 0.036749014910624996
2629
+ A: 0.0276162271726
2630
+ C: 0.9171513184822
2631
+ G: 0.0276162271726
2632
+ T: 0.0276162271726
2633
2633
  track: nukes
2634
2634
  extras:
2635
2635
  ambiguous_char: N
@@ -2641,10 +2641,10 @@ states:
2641
2641
  - !!python/object:python.hmmwriter.State
2642
2642
  emissions:
2643
2643
  probs:
2644
- A: 0.036749014910624996
2645
- C: 0.036749014910624996
2646
- G: 0.036749014910624996
2647
- T: 0.889752955268125
2644
+ A: 0.0276162271726
2645
+ C: 0.0276162271726
2646
+ G: 0.0276162271726
2647
+ T: 0.9171513184822
2648
2648
  track: nukes
2649
2649
  extras:
2650
2650
  ambiguous_char: N
@@ -2656,10 +2656,10 @@ states:
2656
2656
  - !!python/object:python.hmmwriter.State
2657
2657
  emissions:
2658
2658
  probs:
2659
- A: 0.889752955268125
2660
- C: 0.036749014910624996
2661
- G: 0.036749014910624996
2662
- T: 0.036749014910624996
2659
+ A: 0.9171513184822
2660
+ C: 0.0276162271726
2661
+ G: 0.0276162271726
2662
+ T: 0.0276162271726
2663
2663
  track: nukes
2664
2664
  extras:
2665
2665
  ambiguous_char: N
@@ -2671,10 +2671,10 @@ states:
2671
2671
  - !!python/object:python.hmmwriter.State
2672
2672
  emissions:
2673
2673
  probs:
2674
- A: 0.036749014910624996
2675
- C: 0.889752955268125
2676
- G: 0.036749014910624996
2677
- T: 0.036749014910624996
2674
+ A: 0.0276162271726
2675
+ C: 0.9171513184822
2676
+ G: 0.0276162271726
2677
+ T: 0.0276162271726
2678
2678
  track: nukes
2679
2679
  extras:
2680
2680
  ambiguous_char: N
@@ -2686,10 +2686,10 @@ states:
2686
2686
  - !!python/object:python.hmmwriter.State
2687
2687
  emissions:
2688
2688
  probs:
2689
- A: 0.036749014910624996
2690
- C: 0.036749014910624996
2691
- G: 0.889752955268125
2692
- T: 0.036749014910624996
2689
+ A: 0.0276162271726
2690
+ C: 0.0276162271726
2691
+ G: 0.9171513184822
2692
+ T: 0.0276162271726
2693
2693
  track: nukes
2694
2694
  extras:
2695
2695
  ambiguous_char: N
@@ -2701,10 +2701,10 @@ states:
2701
2701
  - !!python/object:python.hmmwriter.State
2702
2702
  emissions:
2703
2703
  probs:
2704
- A: 0.036749014910624996
2705
- C: 0.889752955268125
2706
- G: 0.036749014910624996
2707
- T: 0.036749014910624996
2704
+ A: 0.0276162271726
2705
+ C: 0.9171513184822
2706
+ G: 0.0276162271726
2707
+ T: 0.0276162271726
2708
2708
  track: nukes
2709
2709
  extras:
2710
2710
  ambiguous_char: N
@@ -2716,10 +2716,10 @@ states:
2716
2716
  - !!python/object:python.hmmwriter.State
2717
2717
  emissions:
2718
2718
  probs:
2719
- A: 0.889752955268125
2720
- C: 0.036749014910624996
2721
- G: 0.036749014910624996
2722
- T: 0.036749014910624996
2719
+ A: 0.9171513184822
2720
+ C: 0.0276162271726
2721
+ G: 0.0276162271726
2722
+ T: 0.0276162271726
2723
2723
  track: nukes
2724
2724
  extras:
2725
2725
  ambiguous_char: N
@@ -2731,10 +2731,10 @@ states:
2731
2731
  - !!python/object:python.hmmwriter.State
2732
2732
  emissions:
2733
2733
  probs:
2734
- A: 0.036749014910624996
2735
- C: 0.036749014910624996
2736
- G: 0.889752955268125
2737
- T: 0.036749014910624996
2734
+ A: 0.0276162271726
2735
+ C: 0.0276162271726
2736
+ G: 0.9171513184822
2737
+ T: 0.0276162271726
2738
2738
  track: nukes
2739
2739
  extras:
2740
2740
  ambiguous_char: N
@@ -2746,10 +2746,10 @@ states:
2746
2746
  - !!python/object:python.hmmwriter.State
2747
2747
  emissions:
2748
2748
  probs:
2749
- A: 0.889752955268125
2750
- C: 0.036749014910624996
2751
- G: 0.036749014910624996
2752
- T: 0.036749014910624996
2749
+ A: 0.9171513184822
2750
+ C: 0.0276162271726
2751
+ G: 0.0276162271726
2752
+ T: 0.0276162271726
2753
2753
  track: nukes
2754
2754
  extras:
2755
2755
  ambiguous_char: N
@@ -2761,10 +2761,10 @@ states:
2761
2761
  - !!python/object:python.hmmwriter.State
2762
2762
  emissions:
2763
2763
  probs:
2764
- A: 0.036749014910624996
2765
- C: 0.889752955268125
2766
- G: 0.036749014910624996
2767
- T: 0.036749014910624996
2764
+ A: 0.0276162271726
2765
+ C: 0.9171513184822
2766
+ G: 0.0276162271726
2767
+ T: 0.0276162271726
2768
2768
  track: nukes
2769
2769
  extras:
2770
2770
  ambiguous_char: N
@@ -2776,10 +2776,10 @@ states:
2776
2776
  - !!python/object:python.hmmwriter.State
2777
2777
  emissions:
2778
2778
  probs:
2779
- A: 0.036749014910624996
2780
- C: 0.036749014910624996
2781
- G: 0.036749014910624996
2782
- T: 0.889752955268125
2779
+ A: 0.0276162271726
2780
+ C: 0.0276162271726
2781
+ G: 0.0276162271726
2782
+ T: 0.9171513184822
2783
2783
  track: nukes
2784
2784
  extras:
2785
2785
  ambiguous_char: N
@@ -2791,10 +2791,10 @@ states:
2791
2791
  - !!python/object:python.hmmwriter.State
2792
2792
  emissions:
2793
2793
  probs:
2794
- A: 0.036749014910624996
2795
- C: 0.889752955268125
2796
- G: 0.036749014910624996
2797
- T: 0.036749014910624996
2794
+ A: 0.0276162271726
2795
+ C: 0.9171513184822
2796
+ G: 0.0276162271726
2797
+ T: 0.0276162271726
2798
2798
  track: nukes
2799
2799
  extras:
2800
2800
  ambiguous_char: N
@@ -2806,10 +2806,10 @@ states:
2806
2806
  - !!python/object:python.hmmwriter.State
2807
2807
  emissions:
2808
2808
  probs:
2809
- A: 0.036749014910624996
2810
- C: 0.889752955268125
2811
- G: 0.036749014910624996
2812
- T: 0.036749014910624996
2809
+ A: 0.0276162271726
2810
+ C: 0.9171513184822
2811
+ G: 0.0276162271726
2812
+ T: 0.0276162271726
2813
2813
  track: nukes
2814
2814
  extras:
2815
2815
  ambiguous_char: N
@@ -2821,10 +2821,10 @@ states:
2821
2821
  - !!python/object:python.hmmwriter.State
2822
2822
  emissions:
2823
2823
  probs:
2824
- A: 0.041249999999999995
2825
- C: 0.041249999999999995
2826
- G: 0.835
2827
- T: 0.08249999999999999
2824
+ A: 0.0325
2825
+ C: 0.0325
2826
+ G: 0.87
2827
+ T: 0.065
2828
2828
  track: nukes
2829
2829
  extras:
2830
2830
  ambiguous_char: N
@@ -2836,10 +2836,10 @@ states:
2836
2836
  - !!python/object:python.hmmwriter.State
2837
2837
  emissions:
2838
2838
  probs:
2839
- A: 0.036749014910624996
2840
- C: 0.036749014910624996
2841
- G: 0.036749014910624996
2842
- T: 0.889752955268125
2839
+ A: 0.0276162271726
2840
+ C: 0.0276162271726
2841
+ G: 0.0276162271726
2842
+ T: 0.9171513184822
2843
2843
  track: nukes
2844
2844
  extras:
2845
2845
  ambiguous_char: N
@@ -2851,10 +2851,10 @@ states:
2851
2851
  - !!python/object:python.hmmwriter.State
2852
2852
  emissions:
2853
2853
  probs:
2854
- A: 0.036749014910624996
2855
- C: 0.036749014910624996
2856
- G: 0.889752955268125
2857
- T: 0.036749014910624996
2854
+ A: 0.0276162271726
2855
+ C: 0.0276162271726
2856
+ G: 0.9171513184822
2857
+ T: 0.0276162271726
2858
2858
  track: nukes
2859
2859
  extras:
2860
2860
  ambiguous_char: N
@@ -2866,10 +2866,10 @@ states:
2866
2866
  - !!python/object:python.hmmwriter.State
2867
2867
  emissions:
2868
2868
  probs:
2869
- A: 0.889752955268125
2870
- C: 0.036749014910624996
2871
- G: 0.036749014910624996
2872
- T: 0.036749014910624996
2869
+ A: 0.9171513184822
2870
+ C: 0.0276162271726
2871
+ G: 0.0276162271726
2872
+ T: 0.0276162271726
2873
2873
  track: nukes
2874
2874
  extras:
2875
2875
  ambiguous_char: N
@@ -2881,10 +2881,10 @@ states:
2881
2881
  - !!python/object:python.hmmwriter.State
2882
2882
  emissions:
2883
2883
  probs:
2884
- A: 0.889752955268125
2885
- C: 0.036749014910624996
2886
- G: 0.036749014910624996
2887
- T: 0.036749014910624996
2884
+ A: 0.9171513184822
2885
+ C: 0.0276162271726
2886
+ G: 0.0276162271726
2887
+ T: 0.0276162271726
2888
2888
  track: nukes
2889
2889
  extras:
2890
2890
  ambiguous_char: N
@@ -2896,10 +2896,10 @@ states:
2896
2896
  - !!python/object:python.hmmwriter.State
2897
2897
  emissions:
2898
2898
  probs:
2899
- A: 0.036749014910624996
2900
- C: 0.036749014910624996
2901
- G: 0.889752955268125
2902
- T: 0.036749014910624996
2899
+ A: 0.0276162271726
2900
+ C: 0.0276162271726
2901
+ G: 0.9171513184822
2902
+ T: 0.0276162271726
2903
2903
  track: nukes
2904
2904
  extras:
2905
2905
  ambiguous_char: N
@@ -2911,10 +2911,10 @@ states:
2911
2911
  - !!python/object:python.hmmwriter.State
2912
2912
  emissions:
2913
2913
  probs:
2914
- A: 0.036749014910624996
2915
- C: 0.036749014910624996
2916
- G: 0.889752955268125
2917
- T: 0.036749014910624996
2914
+ A: 0.0276162271726
2915
+ C: 0.0276162271726
2916
+ G: 0.9171513184822
2917
+ T: 0.0276162271726
2918
2918
  track: nukes
2919
2919
  extras:
2920
2920
  ambiguous_char: N
@@ -2926,10 +2926,10 @@ states:
2926
2926
  - !!python/object:python.hmmwriter.State
2927
2927
  emissions:
2928
2928
  probs:
2929
- A: 0.036749014910624996
2930
- C: 0.036749014910624996
2931
- G: 0.889752955268125
2932
- T: 0.036749014910624996
2929
+ A: 0.0276162271726
2930
+ C: 0.0276162271726
2931
+ G: 0.9171513184822
2932
+ T: 0.0276162271726
2933
2933
  track: nukes
2934
2934
  extras:
2935
2935
  ambiguous_char: N
@@ -2941,10 +2941,10 @@ states:
2941
2941
  - !!python/object:python.hmmwriter.State
2942
2942
  emissions:
2943
2943
  probs:
2944
- A: 0.036749014910624996
2945
- C: 0.889752955268125
2946
- G: 0.036749014910624996
2947
- T: 0.036749014910624996
2944
+ A: 0.0276162271726
2945
+ C: 0.9171513184822
2946
+ G: 0.0276162271726
2947
+ T: 0.0276162271726
2948
2948
  track: nukes
2949
2949
  extras:
2950
2950
  ambiguous_char: N
@@ -2956,10 +2956,10 @@ states:
2956
2956
  - !!python/object:python.hmmwriter.State
2957
2957
  emissions:
2958
2958
  probs:
2959
- A: 0.036749014910624996
2960
- C: 0.889752955268125
2961
- G: 0.036749014910624996
2962
- T: 0.036749014910624996
2959
+ A: 0.0276162271726
2960
+ C: 0.9171513184822
2961
+ G: 0.0276162271726
2962
+ T: 0.0276162271726
2963
2963
  track: nukes
2964
2964
  extras:
2965
2965
  ambiguous_char: N
@@ -2971,10 +2971,10 @@ states:
2971
2971
  - !!python/object:python.hmmwriter.State
2972
2972
  emissions:
2973
2973
  probs:
2974
- A: 0.036749014910624996
2975
- C: 0.036749014910624996
2976
- G: 0.889752955268125
2977
- T: 0.036749014910624996
2974
+ A: 0.0276162271726
2975
+ C: 0.0276162271726
2976
+ G: 0.9171513184822
2977
+ T: 0.0276162271726
2978
2978
  track: nukes
2979
2979
  extras:
2980
2980
  ambiguous_char: N
@@ -2986,10 +2986,10 @@ states:
2986
2986
  - !!python/object:python.hmmwriter.State
2987
2987
  emissions:
2988
2988
  probs:
2989
- A: 0.889752955268125
2990
- C: 0.036749014910624996
2991
- G: 0.036749014910624996
2992
- T: 0.036749014910624996
2989
+ A: 0.9171513184822
2990
+ C: 0.0276162271726
2991
+ G: 0.0276162271726
2992
+ T: 0.0276162271726
2993
2993
  track: nukes
2994
2994
  extras:
2995
2995
  ambiguous_char: N
@@ -3001,10 +3001,10 @@ states:
3001
3001
  - !!python/object:python.hmmwriter.State
3002
3002
  emissions:
3003
3003
  probs:
3004
- A: 0.036749014910624996
3005
- C: 0.036749014910624996
3006
- G: 0.036749014910624996
3007
- T: 0.889752955268125
3004
+ A: 0.0276162271726
3005
+ C: 0.0276162271726
3006
+ G: 0.0276162271726
3007
+ T: 0.9171513184822
3008
3008
  track: nukes
3009
3009
  extras:
3010
3010
  ambiguous_char: N
@@ -3016,10 +3016,10 @@ states:
3016
3016
  - !!python/object:python.hmmwriter.State
3017
3017
  emissions:
3018
3018
  probs:
3019
- A: 0.036749014910624996
3020
- C: 0.036749014910624996
3021
- G: 0.036749014910624996
3022
- T: 0.889752955268125
3019
+ A: 0.0276162271726
3020
+ C: 0.0276162271726
3021
+ G: 0.0276162271726
3022
+ T: 0.9171513184822
3023
3023
  track: nukes
3024
3024
  extras:
3025
3025
  ambiguous_char: N
@@ -3031,10 +3031,10 @@ states:
3031
3031
  - !!python/object:python.hmmwriter.State
3032
3032
  emissions:
3033
3033
  probs:
3034
- A: 0.036749014910624996
3035
- C: 0.889752955268125
3036
- G: 0.036749014910624996
3037
- T: 0.036749014910624996
3034
+ A: 0.0276162271726
3035
+ C: 0.9171513184822
3036
+ G: 0.0276162271726
3037
+ T: 0.0276162271726
3038
3038
  track: nukes
3039
3039
  extras:
3040
3040
  ambiguous_char: N
@@ -3046,10 +3046,10 @@ states:
3046
3046
  - !!python/object:python.hmmwriter.State
3047
3047
  emissions:
3048
3048
  probs:
3049
- A: 0.889752955268125
3050
- C: 0.036749014910624996
3051
- G: 0.036749014910624996
3052
- T: 0.036749014910624996
3049
+ A: 0.9171513184822
3050
+ C: 0.0276162271726
3051
+ G: 0.0276162271726
3052
+ T: 0.0276162271726
3053
3053
  track: nukes
3054
3054
  extras:
3055
3055
  ambiguous_char: N
@@ -3061,10 +3061,10 @@ states:
3061
3061
  - !!python/object:python.hmmwriter.State
3062
3062
  emissions:
3063
3063
  probs:
3064
- A: 0.036749014910624996
3065
- C: 0.889752955268125
3066
- G: 0.036749014910624996
3067
- T: 0.036749014910624996
3064
+ A: 0.0276162271726
3065
+ C: 0.9171513184822
3066
+ G: 0.0276162271726
3067
+ T: 0.0276162271726
3068
3068
  track: nukes
3069
3069
  extras:
3070
3070
  ambiguous_char: N
@@ -3076,10 +3076,10 @@ states:
3076
3076
  - !!python/object:python.hmmwriter.State
3077
3077
  emissions:
3078
3078
  probs:
3079
- A: 0.036749014910624996
3080
- C: 0.889752955268125
3081
- G: 0.036749014910624996
3082
- T: 0.036749014910624996
3079
+ A: 0.0276162271726
3080
+ C: 0.9171513184822
3081
+ G: 0.0276162271726
3082
+ T: 0.0276162271726
3083
3083
  track: nukes
3084
3084
  extras:
3085
3085
  ambiguous_char: N
@@ -3091,10 +3091,10 @@ states:
3091
3091
  - !!python/object:python.hmmwriter.State
3092
3092
  emissions:
3093
3093
  probs:
3094
- A: 0.889752955268125
3095
- C: 0.036749014910624996
3096
- G: 0.036749014910624996
3097
- T: 0.036749014910624996
3094
+ A: 0.9171513184822
3095
+ C: 0.0276162271726
3096
+ G: 0.0276162271726
3097
+ T: 0.0276162271726
3098
3098
  track: nukes
3099
3099
  extras:
3100
3100
  ambiguous_char: N
@@ -3106,10 +3106,10 @@ states:
3106
3106
  - !!python/object:python.hmmwriter.State
3107
3107
  emissions:
3108
3108
  probs:
3109
- A: 0.036749014910624996
3110
- C: 0.036749014910624996
3111
- G: 0.036749014910624996
3112
- T: 0.889752955268125
3109
+ A: 0.0276162271726
3110
+ C: 0.0276162271726
3111
+ G: 0.0276162271726
3112
+ T: 0.9171513184822
3113
3113
  track: nukes
3114
3114
  extras:
3115
3115
  ambiguous_char: N
@@ -3121,10 +3121,10 @@ states:
3121
3121
  - !!python/object:python.hmmwriter.State
3122
3122
  emissions:
3123
3123
  probs:
3124
- A: 0.036749014910624996
3125
- C: 0.889752955268125
3126
- G: 0.036749014910624996
3127
- T: 0.036749014910624996
3124
+ A: 0.0276162271726
3125
+ C: 0.9171513184822
3126
+ G: 0.0276162271726
3127
+ T: 0.0276162271726
3128
3128
  track: nukes
3129
3129
  extras:
3130
3130
  ambiguous_char: N
@@ -3136,10 +3136,10 @@ states:
3136
3136
  - !!python/object:python.hmmwriter.State
3137
3137
  emissions:
3138
3138
  probs:
3139
- A: 0.036749014910624996
3140
- C: 0.036749014910624996
3141
- G: 0.036749014910624996
3142
- T: 0.889752955268125
3139
+ A: 0.0276162271726
3140
+ C: 0.0276162271726
3141
+ G: 0.0276162271726
3142
+ T: 0.9171513184822
3143
3143
  track: nukes
3144
3144
  extras:
3145
3145
  ambiguous_char: N
@@ -3151,10 +3151,10 @@ states:
3151
3151
  - !!python/object:python.hmmwriter.State
3152
3152
  emissions:
3153
3153
  probs:
3154
- A: 0.036749014910624996
3155
- C: 0.889752955268125
3156
- G: 0.036749014910624996
3157
- T: 0.036749014910624996
3154
+ A: 0.0276162271726
3155
+ C: 0.9171513184822
3156
+ G: 0.0276162271726
3157
+ T: 0.0276162271726
3158
3158
  track: nukes
3159
3159
  extras:
3160
3160
  ambiguous_char: N
@@ -3166,10 +3166,10 @@ states:
3166
3166
  - !!python/object:python.hmmwriter.State
3167
3167
  emissions:
3168
3168
  probs:
3169
- A: 0.03833333333333333
3170
- C: 0.885
3171
- G: 0.03833333333333333
3172
- T: 0.03833333333333333
3169
+ A: 0.026666666666666665
3170
+ C: 0.92
3171
+ G: 0.026666666666666665
3172
+ T: 0.026666666666666665
3173
3173
  track: nukes
3174
3174
  extras:
3175
3175
  ambiguous_char: N
@@ -3181,10 +3181,10 @@ states:
3181
3181
  - !!python/object:python.hmmwriter.State
3182
3182
  emissions:
3183
3183
  probs:
3184
- A: 0.889752955268125
3185
- C: 0.036749014910624996
3186
- G: 0.036749014910624996
3187
- T: 0.036749014910624996
3184
+ A: 0.9171513184822
3185
+ C: 0.0276162271726
3186
+ G: 0.0276162271726
3187
+ T: 0.0276162271726
3188
3188
  track: nukes
3189
3189
  extras:
3190
3190
  ambiguous_char: N
@@ -3196,10 +3196,10 @@ states:
3196
3196
  - !!python/object:python.hmmwriter.State
3197
3197
  emissions:
3198
3198
  probs:
3199
- A: 0.08249999999999999
3200
- C: 0.041249999999999995
3201
- G: 0.835
3202
- T: 0.041249999999999995
3199
+ A: 0.108
3200
+ C: 0.036
3201
+ G: 0.8200000000000001
3202
+ T: 0.036
3203
3203
  track: nukes
3204
3204
  extras:
3205
3205
  ambiguous_char: N
@@ -3211,10 +3211,10 @@ states:
3211
3211
  - !!python/object:python.hmmwriter.State
3212
3212
  emissions:
3213
3213
  probs:
3214
- A: 0.889752955268125
3215
- C: 0.036749014910624996
3216
- G: 0.036749014910624996
3217
- T: 0.036749014910624996
3214
+ A: 0.9171513184822
3215
+ C: 0.0276162271726
3216
+ G: 0.0276162271726
3217
+ T: 0.0276162271726
3218
3218
  track: nukes
3219
3219
  extras:
3220
3220
  ambiguous_char: N
@@ -3226,10 +3226,10 @@ states:
3226
3226
  - !!python/object:python.hmmwriter.State
3227
3227
  emissions:
3228
3228
  probs:
3229
- A: 0.036749014910624996
3230
- C: 0.036749014910624996
3231
- G: 0.889752955268125
3232
- T: 0.036749014910624996
3229
+ A: 0.0276162271726
3230
+ C: 0.0276162271726
3231
+ G: 0.9171513184822
3232
+ T: 0.0276162271726
3233
3233
  track: nukes
3234
3234
  extras:
3235
3235
  ambiguous_char: N
@@ -3241,10 +3241,10 @@ states:
3241
3241
  - !!python/object:python.hmmwriter.State
3242
3242
  emissions:
3243
3243
  probs:
3244
- A: 0.889752955268125
3245
- C: 0.036749014910624996
3246
- G: 0.036749014910624996
3247
- T: 0.036749014910624996
3244
+ A: 0.9171513184822
3245
+ C: 0.0276162271726
3246
+ G: 0.0276162271726
3247
+ T: 0.0276162271726
3248
3248
  track: nukes
3249
3249
  extras:
3250
3250
  ambiguous_char: N
@@ -3256,10 +3256,10 @@ states:
3256
3256
  - !!python/object:python.hmmwriter.State
3257
3257
  emissions:
3258
3258
  probs:
3259
- A: 0.036749014910624996
3260
- C: 0.889752955268125
3261
- G: 0.036749014910624996
3262
- T: 0.036749014910624996
3259
+ A: 0.0276162271726
3260
+ C: 0.9171513184822
3261
+ G: 0.0276162271726
3262
+ T: 0.0276162271726
3263
3263
  track: nukes
3264
3264
  extras:
3265
3265
  ambiguous_char: N
@@ -3271,10 +3271,10 @@ states:
3271
3271
  - !!python/object:python.hmmwriter.State
3272
3272
  emissions:
3273
3273
  probs:
3274
- A: 0.889752955268125
3275
- C: 0.036749014910624996
3276
- G: 0.036749014910624996
3277
- T: 0.036749014910624996
3274
+ A: 0.9171513184822
3275
+ C: 0.0276162271726
3276
+ G: 0.0276162271726
3277
+ T: 0.0276162271726
3278
3278
  track: nukes
3279
3279
  extras:
3280
3280
  ambiguous_char: N
@@ -3286,10 +3286,10 @@ states:
3286
3286
  - !!python/object:python.hmmwriter.State
3287
3287
  emissions:
3288
3288
  probs:
3289
- A: 0.889752955268125
3290
- C: 0.036749014910624996
3291
- G: 0.036749014910624996
3292
- T: 0.036749014910624996
3289
+ A: 0.9171513184822
3290
+ C: 0.0276162271726
3291
+ G: 0.0276162271726
3292
+ T: 0.0276162271726
3293
3293
  track: nukes
3294
3294
  extras:
3295
3295
  ambiguous_char: N
@@ -3301,10 +3301,10 @@ states:
3301
3301
  - !!python/object:python.hmmwriter.State
3302
3302
  emissions:
3303
3303
  probs:
3304
- A: 0.036749014910624996
3305
- C: 0.036749014910624996
3306
- G: 0.036749014910624996
3307
- T: 0.889752955268125
3304
+ A: 0.0276162271726
3305
+ C: 0.0276162271726
3306
+ G: 0.0276162271726
3307
+ T: 0.9171513184822
3308
3308
  track: nukes
3309
3309
  extras:
3310
3310
  ambiguous_char: N
@@ -3316,10 +3316,10 @@ states:
3316
3316
  - !!python/object:python.hmmwriter.State
3317
3317
  emissions:
3318
3318
  probs:
3319
- A: 0.036749014910624996
3320
- C: 0.036749014910624996
3321
- G: 0.036749014910624996
3322
- T: 0.889752955268125
3319
+ A: 0.0276162271726
3320
+ C: 0.0276162271726
3321
+ G: 0.0276162271726
3322
+ T: 0.9171513184822
3323
3323
  track: nukes
3324
3324
  extras:
3325
3325
  ambiguous_char: N
@@ -3331,10 +3331,10 @@ states:
3331
3331
  - !!python/object:python.hmmwriter.State
3332
3332
  emissions:
3333
3333
  probs:
3334
- A: 0.036749014910624996
3335
- C: 0.889752955268125
3336
- G: 0.036749014910624996
3337
- T: 0.036749014910624996
3334
+ A: 0.0276162271726
3335
+ C: 0.9171513184822
3336
+ G: 0.0276162271726
3337
+ T: 0.0276162271726
3338
3338
  track: nukes
3339
3339
  extras:
3340
3340
  ambiguous_char: N
@@ -3346,10 +3346,10 @@ states:
3346
3346
  - !!python/object:python.hmmwriter.State
3347
3347
  emissions:
3348
3348
  probs:
3349
- A: 0.036749014910624996
3350
- C: 0.889752955268125
3351
- G: 0.036749014910624996
3352
- T: 0.036749014910624996
3349
+ A: 0.0276162271726
3350
+ C: 0.9171513184822
3351
+ G: 0.0276162271726
3352
+ T: 0.0276162271726
3353
3353
  track: nukes
3354
3354
  extras:
3355
3355
  ambiguous_char: N
@@ -3361,10 +3361,10 @@ states:
3361
3361
  - !!python/object:python.hmmwriter.State
3362
3362
  emissions:
3363
3363
  probs:
3364
- A: 0.889752955268125
3365
- C: 0.036749014910624996
3366
- G: 0.036749014910624996
3367
- T: 0.036749014910624996
3364
+ A: 0.9171513184822
3365
+ C: 0.0276162271726
3366
+ G: 0.0276162271726
3367
+ T: 0.0276162271726
3368
3368
  track: nukes
3369
3369
  extras:
3370
3370
  ambiguous_char: N
@@ -3376,10 +3376,10 @@ states:
3376
3376
  - !!python/object:python.hmmwriter.State
3377
3377
  emissions:
3378
3378
  probs:
3379
- A: 0.889752955268125
3380
- C: 0.036749014910624996
3381
- G: 0.036749014910624996
3382
- T: 0.036749014910624996
3379
+ A: 0.9171513184822
3380
+ C: 0.0276162271726
3381
+ G: 0.0276162271726
3382
+ T: 0.0276162271726
3383
3383
  track: nukes
3384
3384
  extras:
3385
3385
  ambiguous_char: N
@@ -3391,10 +3391,10 @@ states:
3391
3391
  - !!python/object:python.hmmwriter.State
3392
3392
  emissions:
3393
3393
  probs:
3394
- A: 0.036749014910624996
3395
- C: 0.036749014910624996
3396
- G: 0.889752955268125
3397
- T: 0.036749014910624996
3394
+ A: 0.0276162271726
3395
+ C: 0.0276162271726
3396
+ G: 0.9171513184822
3397
+ T: 0.0276162271726
3398
3398
  track: nukes
3399
3399
  extras:
3400
3400
  ambiguous_char: N
@@ -3406,10 +3406,10 @@ states:
3406
3406
  - !!python/object:python.hmmwriter.State
3407
3407
  emissions:
3408
3408
  probs:
3409
- A: 0.889752955268125
3410
- C: 0.036749014910624996
3411
- G: 0.036749014910624996
3412
- T: 0.036749014910624996
3409
+ A: 0.9171513184822
3410
+ C: 0.0276162271726
3411
+ G: 0.0276162271726
3412
+ T: 0.0276162271726
3413
3413
  track: nukes
3414
3414
  extras:
3415
3415
  ambiguous_char: N
@@ -3421,10 +3421,10 @@ states:
3421
3421
  - !!python/object:python.hmmwriter.State
3422
3422
  emissions:
3423
3423
  probs:
3424
- A: 0.889752955268125
3425
- C: 0.036749014910624996
3426
- G: 0.036749014910624996
3427
- T: 0.036749014910624996
3424
+ A: 0.9171513184822
3425
+ C: 0.0276162271726
3426
+ G: 0.0276162271726
3427
+ T: 0.0276162271726
3428
3428
  track: nukes
3429
3429
  extras:
3430
3430
  ambiguous_char: N
@@ -3436,10 +3436,10 @@ states:
3436
3436
  - !!python/object:python.hmmwriter.State
3437
3437
  emissions:
3438
3438
  probs:
3439
- A: 0.036749014910624996
3440
- C: 0.889752955268125
3441
- G: 0.036749014910624996
3442
- T: 0.036749014910624996
3439
+ A: 0.026666666666666665
3440
+ C: 0.92
3441
+ G: 0.026666666666666665
3442
+ T: 0.026666666666666665
3443
3443
  track: nukes
3444
3444
  extras:
3445
3445
  ambiguous_char: N
@@ -3451,10 +3451,10 @@ states:
3451
3451
  - !!python/object:python.hmmwriter.State
3452
3452
  emissions:
3453
3453
  probs:
3454
- A: 0.889752955268125
3455
- C: 0.036749014910624996
3456
- G: 0.036749014910624996
3457
- T: 0.036749014910624996
3454
+ A: 0.9171513184822
3455
+ C: 0.0276162271726
3456
+ G: 0.0276162271726
3457
+ T: 0.0276162271726
3458
3458
  track: nukes
3459
3459
  extras:
3460
3460
  ambiguous_char: N
@@ -3466,10 +3466,10 @@ states:
3466
3466
  - !!python/object:python.hmmwriter.State
3467
3467
  emissions:
3468
3468
  probs:
3469
- A: 0.036749014910624996
3470
- C: 0.889752955268125
3471
- G: 0.036749014910624996
3472
- T: 0.036749014910624996
3469
+ A: 0.0276162271726
3470
+ C: 0.9171513184822
3471
+ G: 0.0276162271726
3472
+ T: 0.0276162271726
3473
3473
  track: nukes
3474
3474
  extras:
3475
3475
  ambiguous_char: N
@@ -3481,10 +3481,10 @@ states:
3481
3481
  - !!python/object:python.hmmwriter.State
3482
3482
  emissions:
3483
3483
  probs:
3484
- A: 0.036749014910624996
3485
- C: 0.036749014910624996
3486
- G: 0.889752955268125
3487
- T: 0.036749014910624996
3484
+ A: 0.0276162271726
3485
+ C: 0.0276162271726
3486
+ G: 0.9171513184822
3487
+ T: 0.0276162271726
3488
3488
  track: nukes
3489
3489
  extras:
3490
3490
  ambiguous_char: N
@@ -3496,10 +3496,10 @@ states:
3496
3496
  - !!python/object:python.hmmwriter.State
3497
3497
  emissions:
3498
3498
  probs:
3499
- A: 0.036749014910624996
3500
- C: 0.889752955268125
3501
- G: 0.036749014910624996
3502
- T: 0.036749014910624996
3499
+ A: 0.0276162271726
3500
+ C: 0.9171513184822
3501
+ G: 0.0276162271726
3502
+ T: 0.0276162271726
3503
3503
  track: nukes
3504
3504
  extras:
3505
3505
  ambiguous_char: N
@@ -3511,10 +3511,10 @@ states:
3511
3511
  - !!python/object:python.hmmwriter.State
3512
3512
  emissions:
3513
3513
  probs:
3514
- A: 0.036749014910624996
3515
- C: 0.036749014910624996
3516
- G: 0.036749014910624996
3517
- T: 0.889752955268125
3514
+ A: 0.0276162271726
3515
+ C: 0.0276162271726
3516
+ G: 0.0276162271726
3517
+ T: 0.9171513184822
3518
3518
  track: nukes
3519
3519
  extras:
3520
3520
  ambiguous_char: N
@@ -3526,10 +3526,10 @@ states:
3526
3526
  - !!python/object:python.hmmwriter.State
3527
3527
  emissions:
3528
3528
  probs:
3529
- A: 0.036749014910624996
3530
- C: 0.036749014910624996
3531
- G: 0.889752955268125
3532
- T: 0.036749014910624996
3529
+ A: 0.0276162271726
3530
+ C: 0.0276162271726
3531
+ G: 0.9171513184822
3532
+ T: 0.0276162271726
3533
3533
  track: nukes
3534
3534
  extras:
3535
3535
  ambiguous_char: N
@@ -3541,10 +3541,10 @@ states:
3541
3541
  - !!python/object:python.hmmwriter.State
3542
3542
  emissions:
3543
3543
  probs:
3544
- A: 0.036749014910624996
3545
- C: 0.036749014910624996
3546
- G: 0.036749014910624996
3547
- T: 0.889752955268125
3544
+ A: 0.0276162271726
3545
+ C: 0.0276162271726
3546
+ G: 0.0276162271726
3547
+ T: 0.9171513184822
3548
3548
  track: nukes
3549
3549
  extras:
3550
3550
  ambiguous_char: N
@@ -3556,10 +3556,10 @@ states:
3556
3556
  - !!python/object:python.hmmwriter.State
3557
3557
  emissions:
3558
3558
  probs:
3559
- A: 0.889752955268125
3560
- C: 0.036749014910624996
3561
- G: 0.036749014910624996
3562
- T: 0.036749014910624996
3559
+ A: 0.9171513184822
3560
+ C: 0.0276162271726
3561
+ G: 0.0276162271726
3562
+ T: 0.0276162271726
3563
3563
  track: nukes
3564
3564
  extras:
3565
3565
  ambiguous_char: N
@@ -3571,10 +3571,10 @@ states:
3571
3571
  - !!python/object:python.hmmwriter.State
3572
3572
  emissions:
3573
3573
  probs:
3574
- A: 0.036749014910624996
3575
- C: 0.036749014910624996
3576
- G: 0.036749014910624996
3577
- T: 0.889752955268125
3574
+ A: 0.0276162271726
3575
+ C: 0.0276162271726
3576
+ G: 0.0276162271726
3577
+ T: 0.9171513184822
3578
3578
  track: nukes
3579
3579
  extras:
3580
3580
  ambiguous_char: N
@@ -3586,10 +3586,10 @@ states:
3586
3586
  - !!python/object:python.hmmwriter.State
3587
3587
  emissions:
3588
3588
  probs:
3589
- A: 0.036749014910624996
3590
- C: 0.889752955268125
3591
- G: 0.036749014910624996
3592
- T: 0.036749014910624996
3589
+ A: 0.0276162271726
3590
+ C: 0.9171513184822
3591
+ G: 0.0276162271726
3592
+ T: 0.0276162271726
3593
3593
  track: nukes
3594
3594
  extras:
3595
3595
  ambiguous_char: N
@@ -3601,10 +3601,10 @@ states:
3601
3601
  - !!python/object:python.hmmwriter.State
3602
3602
  emissions:
3603
3603
  probs:
3604
- A: 0.036749014910624996
3605
- C: 0.036749014910624996
3606
- G: 0.036749014910624996
3607
- T: 0.889752955268125
3604
+ A: 0.0276162271726
3605
+ C: 0.0276162271726
3606
+ G: 0.0276162271726
3607
+ T: 0.9171513184822
3608
3608
  track: nukes
3609
3609
  extras:
3610
3610
  ambiguous_char: N
@@ -3616,10 +3616,10 @@ states:
3616
3616
  - !!python/object:python.hmmwriter.State
3617
3617
  emissions:
3618
3618
  probs:
3619
- A: 0.036749014910624996
3620
- C: 0.036749014910624996
3621
- G: 0.036749014910624996
3622
- T: 0.889752955268125
3619
+ A: 0.0276162271726
3620
+ C: 0.0276162271726
3621
+ G: 0.0276162271726
3622
+ T: 0.9171513184822
3623
3623
  track: nukes
3624
3624
  extras:
3625
3625
  ambiguous_char: N
@@ -3631,10 +3631,10 @@ states:
3631
3631
  - !!python/object:python.hmmwriter.State
3632
3632
  emissions:
3633
3633
  probs:
3634
- A: 0.036749014910624996
3635
- C: 0.889752955268125
3636
- G: 0.036749014910624996
3637
- T: 0.036749014910624996
3634
+ A: 0.026666666666666665
3635
+ C: 0.92
3636
+ G: 0.026666666666666665
3637
+ T: 0.026666666666666665
3638
3638
  track: nukes
3639
3639
  extras:
3640
3640
  ambiguous_char: N
@@ -3646,10 +3646,10 @@ states:
3646
3646
  - !!python/object:python.hmmwriter.State
3647
3647
  emissions:
3648
3648
  probs:
3649
- A: 0.889752955268125
3650
- C: 0.036749014910624996
3651
- G: 0.036749014910624996
3652
- T: 0.036749014910624996
3649
+ A: 0.9171513184822
3650
+ C: 0.0276162271726
3651
+ G: 0.0276162271726
3652
+ T: 0.0276162271726
3653
3653
  track: nukes
3654
3654
  extras:
3655
3655
  ambiguous_char: N
@@ -3661,10 +3661,10 @@ states:
3661
3661
  - !!python/object:python.hmmwriter.State
3662
3662
  emissions:
3663
3663
  probs:
3664
- A: 0.889752955268125
3665
- C: 0.036749014910624996
3666
- G: 0.036749014910624996
3667
- T: 0.036749014910624996
3664
+ A: 0.9171513184822
3665
+ C: 0.0276162271726
3666
+ G: 0.0276162271726
3667
+ T: 0.0276162271726
3668
3668
  track: nukes
3669
3669
  extras:
3670
3670
  ambiguous_char: N
@@ -3676,10 +3676,10 @@ states:
3676
3676
  - !!python/object:python.hmmwriter.State
3677
3677
  emissions:
3678
3678
  probs:
3679
- A: 0.889752955268125
3680
- C: 0.036749014910624996
3681
- G: 0.036749014910624996
3682
- T: 0.036749014910624996
3679
+ A: 0.9171513184822
3680
+ C: 0.0276162271726
3681
+ G: 0.0276162271726
3682
+ T: 0.0276162271726
3683
3683
  track: nukes
3684
3684
  extras:
3685
3685
  ambiguous_char: N
@@ -3691,10 +3691,10 @@ states:
3691
3691
  - !!python/object:python.hmmwriter.State
3692
3692
  emissions:
3693
3693
  probs:
3694
- A: 0.036749014910624996
3695
- C: 0.036749014910624996
3696
- G: 0.036749014910624996
3697
- T: 0.889752955268125
3694
+ A: 0.0276162271726
3695
+ C: 0.0276162271726
3696
+ G: 0.0276162271726
3697
+ T: 0.9171513184822
3698
3698
  track: nukes
3699
3699
  extras:
3700
3700
  ambiguous_char: N
@@ -3706,10 +3706,10 @@ states:
3706
3706
  - !!python/object:python.hmmwriter.State
3707
3707
  emissions:
3708
3708
  probs:
3709
- A: 0.036749014910624996
3710
- C: 0.036749014910624996
3711
- G: 0.889752955268125
3712
- T: 0.036749014910624996
3709
+ A: 0.0276162271726
3710
+ C: 0.0276162271726
3711
+ G: 0.9171513184822
3712
+ T: 0.0276162271726
3713
3713
  track: nukes
3714
3714
  extras:
3715
3715
  ambiguous_char: N
@@ -3721,10 +3721,10 @@ states:
3721
3721
  - !!python/object:python.hmmwriter.State
3722
3722
  emissions:
3723
3723
  probs:
3724
- A: 0.889752955268125
3725
- C: 0.036749014910624996
3726
- G: 0.036749014910624996
3727
- T: 0.036749014910624996
3724
+ A: 0.9171513184822
3725
+ C: 0.0276162271726
3726
+ G: 0.0276162271726
3727
+ T: 0.0276162271726
3728
3728
  track: nukes
3729
3729
  extras:
3730
3730
  ambiguous_char: N
@@ -3736,10 +3736,10 @@ states:
3736
3736
  - !!python/object:python.hmmwriter.State
3737
3737
  emissions:
3738
3738
  probs:
3739
- A: 0.889752955268125
3740
- C: 0.036749014910624996
3741
- G: 0.036749014910624996
3742
- T: 0.036749014910624996
3739
+ A: 0.9171513184822
3740
+ C: 0.0276162271726
3741
+ G: 0.0276162271726
3742
+ T: 0.0276162271726
3743
3743
  track: nukes
3744
3744
  extras:
3745
3745
  ambiguous_char: N
@@ -3751,10 +3751,10 @@ states:
3751
3751
  - !!python/object:python.hmmwriter.State
3752
3752
  emissions:
3753
3753
  probs:
3754
- A: 0.036749014910624996
3755
- C: 0.889752955268125
3756
- G: 0.036749014910624996
3757
- T: 0.036749014910624996
3754
+ A: 0.0276162271726
3755
+ C: 0.9171513184822
3756
+ G: 0.0276162271726
3757
+ T: 0.0276162271726
3758
3758
  track: nukes
3759
3759
  extras:
3760
3760
  ambiguous_char: N
@@ -3766,10 +3766,10 @@ states:
3766
3766
  - !!python/object:python.hmmwriter.State
3767
3767
  emissions:
3768
3768
  probs:
3769
- A: 0.889752955268125
3770
- C: 0.036749014910624996
3771
- G: 0.036749014910624996
3772
- T: 0.036749014910624996
3769
+ A: 0.9171513184822
3770
+ C: 0.0276162271726
3771
+ G: 0.0276162271726
3772
+ T: 0.0276162271726
3773
3773
  track: nukes
3774
3774
  extras:
3775
3775
  ambiguous_char: N
@@ -3781,10 +3781,10 @@ states:
3781
3781
  - !!python/object:python.hmmwriter.State
3782
3782
  emissions:
3783
3783
  probs:
3784
- A: 0.036749014910624996
3785
- C: 0.036749014910624996
3786
- G: 0.889752955268125
3787
- T: 0.036749014910624996
3784
+ A: 0.0276162271726
3785
+ C: 0.0276162271726
3786
+ G: 0.9171513184822
3787
+ T: 0.0276162271726
3788
3788
  track: nukes
3789
3789
  extras:
3790
3790
  ambiguous_char: N
@@ -3796,10 +3796,10 @@ states:
3796
3796
  - !!python/object:python.hmmwriter.State
3797
3797
  emissions:
3798
3798
  probs:
3799
- A: 0.036749014910624996
3800
- C: 0.889752955268125
3801
- G: 0.036749014910624996
3802
- T: 0.036749014910624996
3799
+ A: 0.0276162271726
3800
+ C: 0.9171513184822
3801
+ G: 0.0276162271726
3802
+ T: 0.0276162271726
3803
3803
  track: nukes
3804
3804
  extras:
3805
3805
  ambiguous_char: N
@@ -3811,10 +3811,10 @@ states:
3811
3811
  - !!python/object:python.hmmwriter.State
3812
3812
  emissions:
3813
3813
  probs:
3814
- A: 0.036749014910624996
3815
- C: 0.889752955268125
3816
- G: 0.036749014910624996
3817
- T: 0.036749014910624996
3814
+ A: 0.0276162271726
3815
+ C: 0.9171513184822
3816
+ G: 0.0276162271726
3817
+ T: 0.0276162271726
3818
3818
  track: nukes
3819
3819
  extras:
3820
3820
  ambiguous_char: N
@@ -3826,10 +3826,10 @@ states:
3826
3826
  - !!python/object:python.hmmwriter.State
3827
3827
  emissions:
3828
3828
  probs:
3829
- A: 0.036749014910624996
3830
- C: 0.036749014910624996
3831
- G: 0.036749014910624996
3832
- T: 0.889752955268125
3829
+ A: 0.0276162271726
3830
+ C: 0.0276162271726
3831
+ G: 0.0276162271726
3832
+ T: 0.9171513184822
3833
3833
  track: nukes
3834
3834
  extras:
3835
3835
  ambiguous_char: N
@@ -3841,10 +3841,10 @@ states:
3841
3841
  - !!python/object:python.hmmwriter.State
3842
3842
  emissions:
3843
3843
  probs:
3844
- A: 0.036749014910624996
3845
- C: 0.036749014910624996
3846
- G: 0.889752955268125
3847
- T: 0.036749014910624996
3844
+ A: 0.0276162271726
3845
+ C: 0.0276162271726
3846
+ G: 0.9171513184822
3847
+ T: 0.0276162271726
3848
3848
  track: nukes
3849
3849
  extras:
3850
3850
  ambiguous_char: N
@@ -3856,10 +3856,10 @@ states:
3856
3856
  - !!python/object:python.hmmwriter.State
3857
3857
  emissions:
3858
3858
  probs:
3859
- A: 0.889752955268125
3860
- C: 0.036749014910624996
3861
- G: 0.036749014910624996
3862
- T: 0.036749014910624996
3859
+ A: 0.9171513184822
3860
+ C: 0.0276162271726
3861
+ G: 0.0276162271726
3862
+ T: 0.0276162271726
3863
3863
  track: nukes
3864
3864
  extras:
3865
3865
  ambiguous_char: N
@@ -3871,10 +3871,10 @@ states:
3871
3871
  - !!python/object:python.hmmwriter.State
3872
3872
  emissions:
3873
3873
  probs:
3874
- A: 0.036749014910624996
3875
- C: 0.036749014910624996
3876
- G: 0.889752955268125
3877
- T: 0.036749014910624996
3874
+ A: 0.0276162271726
3875
+ C: 0.0276162271726
3876
+ G: 0.9171513184822
3877
+ T: 0.0276162271726
3878
3878
  track: nukes
3879
3879
  extras:
3880
3880
  ambiguous_char: N
@@ -3886,10 +3886,10 @@ states:
3886
3886
  - !!python/object:python.hmmwriter.State
3887
3887
  emissions:
3888
3888
  probs:
3889
- A: 0.889752955268125
3890
- C: 0.036749014910624996
3891
- G: 0.036749014910624996
3892
- T: 0.036749014910624996
3889
+ A: 0.9171513184822
3890
+ C: 0.0276162271726
3891
+ G: 0.0276162271726
3892
+ T: 0.0276162271726
3893
3893
  track: nukes
3894
3894
  extras:
3895
3895
  ambiguous_char: N
@@ -3901,10 +3901,10 @@ states:
3901
3901
  - !!python/object:python.hmmwriter.State
3902
3902
  emissions:
3903
3903
  probs:
3904
- A: 0.036749014910624996
3905
- C: 0.036749014910624996
3906
- G: 0.889752955268125
3907
- T: 0.036749014910624996
3904
+ A: 0.026666666666666665
3905
+ C: 0.026666666666666665
3906
+ G: 0.92
3907
+ T: 0.026666666666666665
3908
3908
  track: nukes
3909
3909
  extras:
3910
3910
  ambiguous_char: N
@@ -3916,10 +3916,10 @@ states:
3916
3916
  - !!python/object:python.hmmwriter.State
3917
3917
  emissions:
3918
3918
  probs:
3919
- A: 0.036749014910624996
3920
- C: 0.889752955268125
3921
- G: 0.036749014910624996
3922
- T: 0.036749014910624996
3919
+ A: 0.0276162271726
3920
+ C: 0.9171513184822
3921
+ G: 0.0276162271726
3922
+ T: 0.0276162271726
3923
3923
  track: nukes
3924
3924
  extras:
3925
3925
  ambiguous_char: N
@@ -3931,10 +3931,10 @@ states:
3931
3931
  - !!python/object:python.hmmwriter.State
3932
3932
  emissions:
3933
3933
  probs:
3934
- A: 0.036749014910624996
3935
- C: 0.036749014910624996
3936
- G: 0.036749014910624996
3937
- T: 0.889752955268125
3934
+ A: 0.0276162271726
3935
+ C: 0.0276162271726
3936
+ G: 0.0276162271726
3937
+ T: 0.9171513184822
3938
3938
  track: nukes
3939
3939
  extras:
3940
3940
  ambiguous_char: N
@@ -3946,10 +3946,10 @@ states:
3946
3946
  - !!python/object:python.hmmwriter.State
3947
3947
  emissions:
3948
3948
  probs:
3949
- A: 0.08249999999999999
3950
- C: 0.041249999999999995
3951
- G: 0.835
3952
- T: 0.041249999999999995
3949
+ A: 0.108
3950
+ C: 0.036
3951
+ G: 0.8200000000000001
3952
+ T: 0.036
3953
3953
  track: nukes
3954
3954
  extras:
3955
3955
  ambiguous_char: N
@@ -3961,10 +3961,10 @@ states:
3961
3961
  - !!python/object:python.hmmwriter.State
3962
3962
  emissions:
3963
3963
  probs:
3964
- A: 0.889752955268125
3965
- C: 0.036749014910624996
3966
- G: 0.036749014910624996
3967
- T: 0.036749014910624996
3964
+ A: 0.9171513184822
3965
+ C: 0.0276162271726
3966
+ G: 0.0276162271726
3967
+ T: 0.0276162271726
3968
3968
  track: nukes
3969
3969
  extras:
3970
3970
  ambiguous_char: N
@@ -3976,10 +3976,10 @@ states:
3976
3976
  - !!python/object:python.hmmwriter.State
3977
3977
  emissions:
3978
3978
  probs:
3979
- A: 0.036749014910624996
3980
- C: 0.036749014910624996
3981
- G: 0.889752955268125
3982
- T: 0.036749014910624996
3979
+ A: 0.0276162271726
3980
+ C: 0.0276162271726
3981
+ G: 0.9171513184822
3982
+ T: 0.0276162271726
3983
3983
  track: nukes
3984
3984
  extras:
3985
3985
  ambiguous_char: N
@@ -3991,10 +3991,10 @@ states:
3991
3991
  - !!python/object:python.hmmwriter.State
3992
3992
  emissions:
3993
3993
  probs:
3994
- A: 0.036749014910624996
3995
- C: 0.036749014910624996
3996
- G: 0.889752955268125
3997
- T: 0.036749014910624996
3994
+ A: 0.0276162271726
3995
+ C: 0.0276162271726
3996
+ G: 0.9171513184822
3997
+ T: 0.0276162271726
3998
3998
  track: nukes
3999
3999
  extras:
4000
4000
  ambiguous_char: N
@@ -4006,10 +4006,10 @@ states:
4006
4006
  - !!python/object:python.hmmwriter.State
4007
4007
  emissions:
4008
4008
  probs:
4009
- A: 0.889752955268125
4010
- C: 0.036749014910624996
4011
- G: 0.036749014910624996
4012
- T: 0.036749014910624996
4009
+ A: 0.9171513184822
4010
+ C: 0.0276162271726
4011
+ G: 0.0276162271726
4012
+ T: 0.0276162271726
4013
4013
  track: nukes
4014
4014
  extras:
4015
4015
  ambiguous_char: N
@@ -4021,10 +4021,10 @@ states:
4021
4021
  - !!python/object:python.hmmwriter.State
4022
4022
  emissions:
4023
4023
  probs:
4024
- A: 0.036749014910624996
4025
- C: 0.889752955268125
4026
- G: 0.036749014910624996
4027
- T: 0.036749014910624996
4024
+ A: 0.0276162271726
4025
+ C: 0.9171513184822
4026
+ G: 0.0276162271726
4027
+ T: 0.0276162271726
4028
4028
  track: nukes
4029
4029
  extras:
4030
4030
  ambiguous_char: N
@@ -4036,10 +4036,10 @@ states:
4036
4036
  - !!python/object:python.hmmwriter.State
4037
4037
  emissions:
4038
4038
  probs:
4039
- A: 0.889752955268125
4040
- C: 0.036749014910624996
4041
- G: 0.036749014910624996
4042
- T: 0.036749014910624996
4039
+ A: 0.9171513184822
4040
+ C: 0.0276162271726
4041
+ G: 0.0276162271726
4042
+ T: 0.0276162271726
4043
4043
  track: nukes
4044
4044
  extras:
4045
4045
  ambiguous_char: N
@@ -4051,10 +4051,10 @@ states:
4051
4051
  - !!python/object:python.hmmwriter.State
4052
4052
  emissions:
4053
4053
  probs:
4054
- A: 0.036749014910624996
4055
- C: 0.889752955268125
4056
- G: 0.036749014910624996
4057
- T: 0.036749014910624996
4054
+ A: 0.026666666666666665
4055
+ C: 0.92
4056
+ G: 0.026666666666666665
4057
+ T: 0.026666666666666665
4058
4058
  track: nukes
4059
4059
  extras:
4060
4060
  ambiguous_char: N
@@ -4066,10 +4066,10 @@ states:
4066
4066
  - !!python/object:python.hmmwriter.State
4067
4067
  emissions:
4068
4068
  probs:
4069
- A: 0.036749014910624996
4070
- C: 0.036749014910624996
4071
- G: 0.889752955268125
4072
- T: 0.036749014910624996
4069
+ A: 0.0276162271726
4070
+ C: 0.0276162271726
4071
+ G: 0.9171513184822
4072
+ T: 0.0276162271726
4073
4073
  track: nukes
4074
4074
  extras:
4075
4075
  ambiguous_char: N
@@ -4081,10 +4081,10 @@ states:
4081
4081
  - !!python/object:python.hmmwriter.State
4082
4082
  emissions:
4083
4083
  probs:
4084
- A: 0.036749014910624996
4085
- C: 0.036749014910624996
4086
- G: 0.889752955268125
4087
- T: 0.036749014910624996
4084
+ A: 0.0276162271726
4085
+ C: 0.0276162271726
4086
+ G: 0.9171513184822
4087
+ T: 0.0276162271726
4088
4088
  track: nukes
4089
4089
  extras:
4090
4090
  ambiguous_char: N
@@ -4096,10 +4096,10 @@ states:
4096
4096
  - !!python/object:python.hmmwriter.State
4097
4097
  emissions:
4098
4098
  probs:
4099
- A: 0.036749014910624996
4100
- C: 0.889752955268125
4101
- G: 0.036749014910624996
4102
- T: 0.036749014910624996
4099
+ A: 0.0276162271726
4100
+ C: 0.9171513184822
4101
+ G: 0.0276162271726
4102
+ T: 0.0276162271726
4103
4103
  track: nukes
4104
4104
  extras:
4105
4105
  ambiguous_char: N
@@ -4111,10 +4111,10 @@ states:
4111
4111
  - !!python/object:python.hmmwriter.State
4112
4112
  emissions:
4113
4113
  probs:
4114
- A: 0.036749014910624996
4115
- C: 0.036749014910624996
4116
- G: 0.036749014910624996
4117
- T: 0.889752955268125
4114
+ A: 0.0276162271726
4115
+ C: 0.0276162271726
4116
+ G: 0.0276162271726
4117
+ T: 0.9171513184822
4118
4118
  track: nukes
4119
4119
  extras:
4120
4120
  ambiguous_char: N
@@ -4126,10 +4126,10 @@ states:
4126
4126
  - !!python/object:python.hmmwriter.State
4127
4127
  emissions:
4128
4128
  probs:
4129
- A: 0.036749014910624996
4130
- C: 0.036749014910624996
4131
- G: 0.889752955268125
4132
- T: 0.036749014910624996
4129
+ A: 0.0276162271726
4130
+ C: 0.0276162271726
4131
+ G: 0.9171513184822
4132
+ T: 0.0276162271726
4133
4133
  track: nukes
4134
4134
  extras:
4135
4135
  ambiguous_char: N
@@ -4141,10 +4141,10 @@ states:
4141
4141
  - !!python/object:python.hmmwriter.State
4142
4142
  emissions:
4143
4143
  probs:
4144
- A: 0.03833333333333333
4145
- C: 0.03833333333333333
4146
- G: 0.03833333333333333
4147
- T: 0.885
4144
+ A: 0.026666666666666665
4145
+ C: 0.026666666666666665
4146
+ G: 0.026666666666666665
4147
+ T: 0.92
4148
4148
  track: nukes
4149
4149
  extras:
4150
4150
  ambiguous_char: N
@@ -4156,10 +4156,10 @@ states:
4156
4156
  - !!python/object:python.hmmwriter.State
4157
4157
  emissions:
4158
4158
  probs:
4159
- A: 0.036749014910624996
4160
- C: 0.036749014910624996
4161
- G: 0.889752955268125
4162
- T: 0.036749014910624996
4159
+ A: 0.0276162271726
4160
+ C: 0.0276162271726
4161
+ G: 0.9171513184822
4162
+ T: 0.0276162271726
4163
4163
  track: nukes
4164
4164
  extras:
4165
4165
  ambiguous_char: N
@@ -4171,10 +4171,10 @@ states:
4171
4171
  - !!python/object:python.hmmwriter.State
4172
4172
  emissions:
4173
4173
  probs:
4174
- A: 0.036749014910624996
4175
- C: 0.036749014910624996
4176
- G: 0.036749014910624996
4177
- T: 0.889752955268125
4174
+ A: 0.0325
4175
+ C: 0.0325
4176
+ G: 0.065
4177
+ T: 0.87
4178
4178
  track: nukes
4179
4179
  extras:
4180
4180
  ambiguous_char: N
@@ -4186,10 +4186,10 @@ states:
4186
4186
  - !!python/object:python.hmmwriter.State
4187
4187
  emissions:
4188
4188
  probs:
4189
- A: 0.889752955268125
4190
- C: 0.036749014910624996
4191
- G: 0.036749014910624996
4192
- T: 0.036749014910624996
4189
+ A: 0.9171513184822
4190
+ C: 0.0276162271726
4191
+ G: 0.0276162271726
4192
+ T: 0.0276162271726
4193
4193
  track: nukes
4194
4194
  extras:
4195
4195
  ambiguous_char: N
@@ -4201,10 +4201,10 @@ states:
4201
4201
  - !!python/object:python.hmmwriter.State
4202
4202
  emissions:
4203
4203
  probs:
4204
- A: 0.036749014910624996
4205
- C: 0.036749014910624996
4206
- G: 0.036749014910624996
4207
- T: 0.889752955268125
4204
+ A: 0.0276162271726
4205
+ C: 0.0276162271726
4206
+ G: 0.0276162271726
4207
+ T: 0.9171513184822
4208
4208
  track: nukes
4209
4209
  extras:
4210
4210
  ambiguous_char: N
@@ -4216,10 +4216,10 @@ states:
4216
4216
  - !!python/object:python.hmmwriter.State
4217
4217
  emissions:
4218
4218
  probs:
4219
- A: 0.036749014910624996
4220
- C: 0.036749014910624996
4221
- G: 0.036749014910624996
4222
- T: 0.889752955268125
4219
+ A: 0.0276162271726
4220
+ C: 0.0276162271726
4221
+ G: 0.0276162271726
4222
+ T: 0.9171513184822
4223
4223
  track: nukes
4224
4224
  extras:
4225
4225
  ambiguous_char: N
@@ -4231,10 +4231,10 @@ states:
4231
4231
  - !!python/object:python.hmmwriter.State
4232
4232
  emissions:
4233
4233
  probs:
4234
- A: 0.889752955268125
4235
- C: 0.036749014910624996
4236
- G: 0.036749014910624996
4237
- T: 0.036749014910624996
4234
+ A: 0.9171513184822
4235
+ C: 0.0276162271726
4236
+ G: 0.0276162271726
4237
+ T: 0.0276162271726
4238
4238
  track: nukes
4239
4239
  extras:
4240
4240
  ambiguous_char: N
@@ -4246,10 +4246,10 @@ states:
4246
4246
  - !!python/object:python.hmmwriter.State
4247
4247
  emissions:
4248
4248
  probs:
4249
- A: 0.036749014910624996
4250
- C: 0.889752955268125
4251
- G: 0.036749014910624996
4252
- T: 0.036749014910624996
4249
+ A: 0.0276162271726
4250
+ C: 0.9171513184822
4251
+ G: 0.0276162271726
4252
+ T: 0.0276162271726
4253
4253
  track: nukes
4254
4254
  extras:
4255
4255
  ambiguous_char: N
@@ -4261,10 +4261,10 @@ states:
4261
4261
  - !!python/object:python.hmmwriter.State
4262
4262
  emissions:
4263
4263
  probs:
4264
- A: 0.036749014910624996
4265
- C: 0.036749014910624996
4266
- G: 0.036749014910624996
4267
- T: 0.889752955268125
4264
+ A: 0.0276162271726
4265
+ C: 0.0276162271726
4266
+ G: 0.0276162271726
4267
+ T: 0.9171513184822
4268
4268
  track: nukes
4269
4269
  extras:
4270
4270
  ambiguous_char: N
@@ -4276,10 +4276,10 @@ states:
4276
4276
  - !!python/object:python.hmmwriter.State
4277
4277
  emissions:
4278
4278
  probs:
4279
- A: 0.036749014910624996
4280
- C: 0.036749014910624996
4281
- G: 0.889752955268125
4282
- T: 0.036749014910624996
4279
+ A: 0.0276162271726
4280
+ C: 0.0276162271726
4281
+ G: 0.9171513184822
4282
+ T: 0.0276162271726
4283
4283
  track: nukes
4284
4284
  extras:
4285
4285
  ambiguous_char: N
@@ -4291,10 +4291,10 @@ states:
4291
4291
  - !!python/object:python.hmmwriter.State
4292
4292
  emissions:
4293
4293
  probs:
4294
- A: 0.036798004811441895
4295
- C: 0.036798004811441895
4296
- G: 0.036798004811441895
4297
- T: 0.8896059855656743
4294
+ A: 0.02769393804182027
4295
+ C: 0.02769393804182027
4296
+ G: 0.02769393804182027
4297
+ T: 0.9169181858745392
4298
4298
  track: nukes
4299
4299
  extras:
4300
4300
  ambiguous_char: N
@@ -4302,15 +4302,15 @@ states:
4302
4302
  germline: T
4303
4303
  name: IGHV3-66_star_02_284
4304
4304
  transitions:
4305
- IGHV3-66_star_02_285: 0.9428571428571428
4306
- end: 0.05714285714285714
4305
+ IGHV3-66_star_02_285: 0.9692307692307692
4306
+ end: 0.03076923076923077
4307
4307
  - !!python/object:python.hmmwriter.State
4308
4308
  emissions:
4309
4309
  probs:
4310
- A: 0.036846994712258795
4311
- C: 0.036846994712258795
4312
- G: 0.8894590158632236
4313
- T: 0.036846994712258795
4310
+ A: 0.027771648911040538
4311
+ C: 0.027771648911040538
4312
+ G: 0.9166850532668784
4313
+ T: 0.027771648911040538
4314
4314
  track: nukes
4315
4315
  extras:
4316
4316
  ambiguous_char: N
@@ -4318,15 +4318,15 @@ states:
4318
4318
  germline: G
4319
4319
  name: IGHV3-66_star_02_285
4320
4320
  transitions:
4321
- IGHV3-66_star_02_286: 0.9428571428571428
4322
- end: 0.05714285714285714
4321
+ IGHV3-66_star_02_286: 0.9692307692307692
4322
+ end: 0.03076923076923077
4323
4323
  - !!python/object:python.hmmwriter.State
4324
4324
  emissions:
4325
4325
  probs:
4326
- A: 0.036895984613075694
4327
- C: 0.8893120461607729
4328
- G: 0.036895984613075694
4329
- T: 0.036895984613075694
4326
+ A: 0.027849359780260804
4327
+ C: 0.9164519206592175
4328
+ G: 0.027849359780260804
4329
+ T: 0.027849359780260804
4330
4330
  track: nukes
4331
4331
  extras:
4332
4332
  ambiguous_char: N
@@ -4334,15 +4334,15 @@ states:
4334
4334
  germline: C
4335
4335
  name: IGHV3-66_star_02_286
4336
4336
  transitions:
4337
- IGHV3-66_star_02_287: 0.9428571428571428
4338
- end: 0.05714285714285714
4337
+ IGHV3-66_star_02_287: 0.9692307692307692
4338
+ end: 0.03076923076923077
4339
4339
  - !!python/object:python.hmmwriter.State
4340
4340
  emissions:
4341
4341
  probs:
4342
- A: 0.03694497451389259
4343
- C: 0.03694497451389259
4344
- G: 0.8891650764583222
4345
- T: 0.03694497451389259
4342
+ A: 0.02792707064948107
4343
+ C: 0.02792707064948107
4344
+ G: 0.9162187880515568
4345
+ T: 0.02792707064948107
4346
4346
  track: nukes
4347
4347
  extras:
4348
4348
  ambiguous_char: N
@@ -4350,15 +4350,15 @@ states:
4350
4350
  germline: G
4351
4351
  name: IGHV3-66_star_02_287
4352
4352
  transitions:
4353
- IGHV3-66_star_02_288: 0.9428571428571428
4354
- end: 0.05714285714285714
4353
+ IGHV3-66_star_02_288: 0.9692307692307692
4354
+ end: 0.03076923076923077
4355
4355
  - !!python/object:python.hmmwriter.State
4356
4356
  emissions:
4357
4357
  probs:
4358
- A: 0.8890181067558716
4359
- C: 0.03699396441470949
4360
- G: 0.03699396441470949
4361
- T: 0.03699396441470949
4358
+ A: 0.915985655443896
4359
+ C: 0.02800478151870134
4360
+ G: 0.02800478151870134
4361
+ T: 0.02800478151870134
4362
4362
  track: nukes
4363
4363
  extras:
4364
4364
  ambiguous_char: N
@@ -4366,15 +4366,15 @@ states:
4366
4366
  germline: A
4367
4367
  name: IGHV3-66_star_02_288
4368
4368
  transitions:
4369
- IGHV3-66_star_02_289: 0.9428571428571428
4370
- end: 0.05714285714285714
4369
+ IGHV3-66_star_02_289: 0.9692307692307692
4370
+ end: 0.03076923076923077
4371
4371
  - !!python/object:python.hmmwriter.State
4372
4372
  emissions:
4373
4373
  probs:
4374
- A: 0.037042954315526386
4375
- C: 0.037042954315526386
4376
- G: 0.8888711370534208
4377
- T: 0.037042954315526386
4374
+ A: 0.028082492387921616
4375
+ C: 0.028082492387921616
4376
+ G: 0.9157525228362351
4377
+ T: 0.028082492387921616
4378
4378
  track: nukes
4379
4379
  extras:
4380
4380
  ambiguous_char: N
@@ -4387,10 +4387,10 @@ states:
4387
4387
  - !!python/object:python.hmmwriter.State
4388
4388
  emissions:
4389
4389
  probs:
4390
- A: 0.8887241673509702
4391
- C: 0.037091944216343285
4392
- G: 0.037091944216343285
4393
- T: 0.037091944216343285
4390
+ A: 0.9155193902285743
4391
+ C: 0.02816020325714188
4392
+ G: 0.02816020325714188
4393
+ T: 0.02816020325714188
4394
4394
  track: nukes
4395
4395
  extras:
4396
4396
  ambiguous_char: N
@@ -4403,10 +4403,10 @@ states:
4403
4403
  - !!python/object:python.hmmwriter.State
4404
4404
  emissions:
4405
4405
  probs:
4406
- A: 0.03676141394190555
4407
- C: 0.03676141394190555
4408
- G: 0.8897157581742834
4409
- T: 0.03676141394190555
4406
+ A: 0.02915520614302789
4407
+ C: 0.02915520614302789
4408
+ G: 0.9125343815709164
4409
+ T: 0.02915520614302789
4410
4410
  track: nukes
4411
4411
  extras:
4412
4412
  ambiguous_char: N
@@ -4414,15 +4414,15 @@ states:
4414
4414
  germline: G
4415
4415
  name: IGHV3-66_star_02_291
4416
4416
  transitions:
4417
- IGHV3-66_star_02_292: 0.9428571428571428
4418
- end: 0.05714285714285714
4417
+ IGHV3-66_star_02_292: 0.7846153846153846
4418
+ end: 0.2153846153846154
4419
4419
  - !!python/object:python.hmmwriter.State
4420
4420
  emissions:
4421
4421
  probs:
4422
- A: 0.8884302279460687
4423
- C: 0.037189924017977084
4424
- G: 0.037189924017977084
4425
- T: 0.037189924017977084
4422
+ A: 0.9150531250132528
4423
+ C: 0.02831562499558242
4424
+ G: 0.02831562499558242
4425
+ T: 0.02831562499558242
4426
4426
  track: nukes
4427
4427
  extras:
4428
4428
  ambiguous_char: N