opentrons 8.1.0a0__py2.py3-none-any.whl → 8.2.0__py2.py3-none-any.whl

opentrons/protocol_engine/commands/absorbance_reader/measure.py

@@ -1,94 +0,0 @@
-"""Command models to measure absorbance."""
-from __future__ import annotations
-from typing import List, Optional, TYPE_CHECKING
-from typing_extensions import Literal, Type
-
-from pydantic import BaseModel, Field
-
-from ..command import AbstractCommandImpl, BaseCommand, BaseCommandCreate, SuccessData
-from ...errors.error_occurrence import ErrorOccurrence
-
-if TYPE_CHECKING:
-    from opentrons.protocol_engine.state import StateView
-    from opentrons.protocol_engine.execution import EquipmentHandler
-
-
-MeasureAbsorbanceCommandType = Literal["absorbanceReader/measure"]
-
-
-class MeasureAbsorbanceParams(BaseModel):
-    """Input parameters for a single absorbance reading."""
-
-    moduleId: str = Field(..., description="Unique ID of the Absorbance Reader.")
-    sampleWavelength: int = Field(..., description="Sample wavelength in nm.")
-
-
-class MeasureAbsorbanceResult(BaseModel):
-    """Result data from running an aborbance reading."""
-
-    # TODO: Transform this into a more complex model, such as a map with well names.
-    data: Optional[List[float]] = Field(
-        ..., min_items=96, max_items=96, description="Absorbance data points."
-    )
-
-
-class MeasureAbsorbanceImpl(
-    AbstractCommandImpl[
-        MeasureAbsorbanceParams, SuccessData[MeasureAbsorbanceResult, None]
-    ]
-):
-    """Execution implementation of an Absorbance Reader measurement."""
-
-    def __init__(
-        self,
-        state_view: StateView,
-        equipment: EquipmentHandler,
-        **unused_dependencies: object,
-    ) -> None:
-        self._state_view = state_view
-        self._equipment = equipment
-
-    async def execute(
-        self, params: MeasureAbsorbanceParams
-    ) -> SuccessData[MeasureAbsorbanceResult, None]:
-        """Initiate a single absorbance measurement."""
-        abs_reader_substate = self._state_view.modules.get_absorbance_reader_substate(
-            module_id=params.moduleId
-        )
-        # Allow propagation of ModuleNotAttachedError.
-        abs_reader = self._equipment.get_module_hardware_api(
-            abs_reader_substate.module_id
-        )
-
-        if abs_reader is not None:
-            result = await abs_reader.start_measure(wavelength=params.sampleWavelength)
-            return SuccessData(
-                public=MeasureAbsorbanceResult(data=result),
-                private=None,
-            )
-
-        return SuccessData(
-            public=MeasureAbsorbanceResult(data=None),
-            private=None,
-        )
-
-
-class MeasureAbsorbance(
-    BaseCommand[MeasureAbsorbanceParams, MeasureAbsorbanceResult, ErrorOccurrence]
-):
-    """A command to execute an Absorbance Reader measurement."""
-
-    commandType: MeasureAbsorbanceCommandType = "absorbanceReader/measure"
-    params: MeasureAbsorbanceParams
-    result: Optional[MeasureAbsorbanceResult]
-
-    _ImplementationCls: Type[MeasureAbsorbanceImpl] = MeasureAbsorbanceImpl
-
-
-class MeasureAbsorbanceCreate(BaseCommandCreate[MeasureAbsorbanceParams]):
-    """A request to execute an Absorbance Reader measurement."""
-
-    commandType: MeasureAbsorbanceCommandType = "absorbanceReader/measure"
-    params: MeasureAbsorbanceParams
-
-    _CommandCls: Type[MeasureAbsorbance] = MeasureAbsorbance

opentrons/protocol_engine/commands/configuring_common.py

@@ -1,26 +0,0 @@
-"""Common configuration command base models."""
-
-from dataclasses import dataclass
-from opentrons.hardware_control.nozzle_manager import (
-    NozzleMap,
-)
-from ..resources import pipette_data_provider
-
-
-@dataclass
-class PipetteConfigUpdateResultMixin:
-    """A mixin-suitable model for adding pipette config to private results."""
-
-    pipette_id: str
-    serial_number: str
-    config: pipette_data_provider.LoadedStaticPipetteData
-
-
-@dataclass
-class PipetteNozzleLayoutResultMixin:
-    """A nozzle layout result for updating the pipette state."""
-
-    pipette_id: str
-
-    nozzle_map: NozzleMap
-    """A dataclass object holding information about the current nozzle configuration."""

opentrons/protocol_runner/thread_async_queue.py

@@ -1,174 +0,0 @@
-"""Safely pass values between threads and async tasks."""
-
-
-from __future__ import annotations
-
-from collections import deque
-from threading import Condition
-from typing import AsyncIterable, Deque, Generic, Iterable, TypeVar
-
-from anyio.to_thread import run_sync
-
-
-_T = TypeVar("_T")
-
-
-class ThreadAsyncQueue(Generic[_T]):
-    """A queue to safely pass values of type `_T` between threads and async tasks.
-
-    All methods are safe to call concurrently from any thread or task.
-
-    Compared to queue.Queue:
-
-    * This class lets you close the queue to signal that no more values will be added,
-      which makes common producer/consumer patterns easier.
-      (This is like Golang channels and AnyIO memory object streams.)
-    * This class has built-in support for async consumers.
-
-    Compared to asyncio.Queue and AnyIO memory object streams:
-
-    * You can use this class to communicate between async tasks and threads
-      without the threads having to wait for the event loop to be free
-      every time they access the queue.
-    """
-
-    def __init__(self) -> None:
-        """Initialize the queue."""
-        self._is_closed = False
-        self._deque: Deque[_T] = deque()
-        self._condition = Condition()
-
-    def put(self, value: _T) -> None:
-        """Add a value to the back of the queue.
-
-        Returns immediately, without blocking. The queue can grow without bound.
-
-        Raises:
-            QueueClosed: If the queue is already closed.
-        """
-        with self._condition:
-            if self._is_closed:
-                raise QueueClosed("Can't add more values when queue is already closed.")
-            else:
-                self._deque.append(value)
-                self._condition.notify()
-
-    def get(self) -> _T:
-        """Remove and return the value at the front of the queue.
-
-        If the queue is empty, this blocks until a new value is available.
-        If you're calling from an async task, use one of the async methods instead
-        to avoid blocking the event loop.
-
-        Raises:
-            QueueClosed: If all values have been consumed
-                and the queue has been closed with `done_putting()`.
-        """
-        with self._condition:
-            while True:
-                if len(self._deque) > 0:
-                    return self._deque.popleft()
-                elif self._is_closed:
-                    raise QueueClosed("Queue closed; no more items to get.")
-                else:
-                    # We don't have anything to return.
-                    # Wait for something to change, then check again.
-                    self._condition.wait()
-
-    def get_until_closed(self) -> Iterable[_T]:
-        """Remove and return values from the front of the queue until it's closed.
-
-        Example:
-            for value in queue.get_until_closed():
-                print(value)
-        """
-        while True:
-            try:
-                yield self.get()
-            except QueueClosed:
-                break
-
-    async def get_async(self) -> _T:
-        """Like `get()`, except yield to the event loop while waiting.
-
-        Warning:
-            A waiting `get_async()` won't be interrupted by an async cancellation.
-            The proper way to interrupt a waiting `get_async()`
-            is to close the queue, just like you have to do with `get()`.
-        """
-        return await run_sync(
-            self.get,
-            # We keep `cancellable` False so we don't leak this helper thread.
-            # If we made it True, an async cancellation here would detach us
-            # from the helper thread and allow the thread to "run to completion"--
-            # but if no more values are ever enqueued, and the queue is never closed,
-            # completion would never happen and it would hang around forever.
-            cancellable=False,
-        )
-
-    async def get_async_until_closed(self) -> AsyncIterable[_T]:
-        """Like `get_until_closed()`, except yield to the event loop while waiting.
-
-        Example:
-            async for value in queue.get_async_until_closed():
-                print(value)
-
-        Warning:
-            While the ``async for`` is waiting for a new value,
-            it won't be interrupted by an async cancellation.
-            The proper way to interrupt a waiting `get_async_until_closed()`
-            is to close the queue, just like you have to do with `get()`.
-        """
-        while True:
-            try:
-                yield await self.get_async()
-            except QueueClosed:
-                break
-
-    def done_putting(self) -> None:
-        """Close the queue, i.e. signal that no more values will be `put()`.
-
-        You normally *must* close the queue eventually
-        to inform consumers that they can stop waiting for new values.
-        Forgetting to do this can leave them waiting forever,
-        leaking tasks or threads or causing deadlocks.
-
-        Consider using a ``with`` block instead. See `__enter__()`.
-
-        Raises:
-            QueueClosed: If the queue is already closed.
-        """
-        with self._condition:
-            if self._is_closed:
-                raise QueueClosed("Can't close when queue is already closed.")
-            else:
-                self._is_closed = True
-                self._condition.notify_all()
-
-    def __enter__(self) -> ThreadAsyncQueue[_T]:
-        """Use the queue as a context manager, closing the queue upon exit.
-
-        Example:
-            This:
-
-                with queue:
-                    do_stuff()
-
-            Is equivalent to:
-
-                try:
-                    do_stuff()
-                finally:
-                    queue.done_putting()
-        """
-        return self
-
-    def __exit__(self, exc_type: object, exc_val: object, exc_tb: object) -> None:
-        """See `__enter__()`."""
-        self.done_putting()
-
-
-class QueueClosed(Exception):
-    """See `ThreadAsyncQueue.done_putting()`."""
-
-    pass