opentrons 8.1.0a0__py2.py3-none-any.whl → 8.2.0__py2.py3-none-any.whl

opentrons/protocol_engine/state/update_types.py

@@ -0,0 +1,424 @@
+"""Structures to represent changes that commands want to make to engine state."""
+
+
+import dataclasses
+import enum
+import typing
+from datetime import datetime
+
+from opentrons.hardware_control.nozzle_manager import NozzleMap
+from opentrons.protocol_engine.resources import pipette_data_provider
+from opentrons.protocol_engine.types import DeckPoint, LabwareLocation, TipGeometry
+from opentrons.types import MountType
+from opentrons_shared_data.labware.labware_definition import LabwareDefinition
+from opentrons_shared_data.pipette.types import PipetteNameType
+
+
+class _NoChangeEnum(enum.Enum):
+    NO_CHANGE = enum.auto()
+
+
+NO_CHANGE: typing.Final = _NoChangeEnum.NO_CHANGE
+"""A sentinel value to indicate that a value shouldn't be changed.
+
+Useful when `None` is semantically unclear or already has some other meaning.
+"""
+
+
+NoChangeType: typing.TypeAlias = typing.Literal[_NoChangeEnum.NO_CHANGE]
+"""The type of `NO_CHANGE`, as `NoneType` is to `None`.
+
+Unfortunately, mypy doesn't let us write `Literal[NO_CHANGE]`. Use this instead.
+"""
+
+
+class _ClearEnum(enum.Enum):
+    CLEAR = enum.auto()
+
+
+CLEAR: typing.Final = _ClearEnum.CLEAR
+"""A sentinel value to indicate that a value should be cleared.
+
+Useful when `None` is semantically unclear or has some other meaning.
+"""
+
+
+ClearType: typing.TypeAlias = typing.Literal[_ClearEnum.CLEAR]
+"""The type of `CLEAR`, as `NoneType` is to `None`.
+
+Unfortunately, mypy doesn't let us write `Literal[CLEAR]`. Use this instead.
+"""
+
+
+@dataclasses.dataclass(frozen=True)
+class Well:
+    """Designates a well in a labware."""
+
+    labware_id: str
+    well_name: str
+
+
+@dataclasses.dataclass(frozen=True)
+class AddressableArea:
+    """Designates an addressable area."""
+
+    addressable_area_name: str
+
+
+@dataclasses.dataclass
+class PipetteLocationUpdate:
+    """An update to a pipette's location."""
+
+    pipette_id: str
+    """The ID of the already-loaded pipette."""
+
+    new_location: Well | AddressableArea | None | NoChangeType
+    """The pipette's new logical location.
+
+    Note: `new_location=None` means "change the location to `None` (unknown)",
+    not "do not change the location".
+    """
+
+    new_deck_point: DeckPoint | NoChangeType
+
+
+@dataclasses.dataclass
+class LabwareLocationUpdate:
+    """An update to a labware's location."""
+
+    labware_id: str
+    """The ID of the already-loaded labware."""
+
+    new_location: LabwareLocation
+    """The labware's new location."""
+
+    offset_id: typing.Optional[str]
+    """The ID of the labware's new offset, for its new location."""
+
+
+@dataclasses.dataclass
+class LoadedLabwareUpdate:
+    """An update that loads a new labware."""
+
+    labware_id: str
+    """The unique ID of the new labware."""
+
+    new_location: LabwareLocation
+    """The labware's initial location."""
+
+    offset_id: typing.Optional[str]
+    """The ID of the labware's offset."""
+
+    display_name: typing.Optional[str]
+
+    definition: LabwareDefinition
+
+
+@dataclasses.dataclass
+class LoadPipetteUpdate:
+    """An update that loads a new pipette.
+
+    NOTE: Currently, if this is provided, a PipetteConfigUpdate must always be
+    provided alongside it to fully initialize everything.
+    """
+
+    pipette_id: str
+    """The unique ID of the new pipette."""
+
+    pipette_name: PipetteNameType
+    mount: MountType
+    liquid_presence_detection: typing.Optional[bool]
+
+
+@dataclasses.dataclass
+class PipetteConfigUpdate:
+    """An update to a pipette's config."""
+
+    pipette_id: str
+    """The ID of the already-loaded pipette."""
+
+    # todo(mm, 2024-10-14): Does serial_number belong in LoadPipetteUpdate?
+    serial_number: str
+
+    config: pipette_data_provider.LoadedStaticPipetteData
+
+
+@dataclasses.dataclass
+class PipetteNozzleMapUpdate:
+    """Update pipette nozzle map."""
+
+    pipette_id: str
+    nozzle_map: NozzleMap
+
+
+@dataclasses.dataclass
+class PipetteTipStateUpdate:
+    """Update pipette tip state."""
+
+    pipette_id: str
+    tip_geometry: typing.Optional[TipGeometry]
+
+
+@dataclasses.dataclass
+class TipsUsedUpdate:
+    """Represents an update that marks tips in a tip rack as used."""
+
+    pipette_id: str
+    """The pipette that did the tip pickup."""
+
+    labware_id: str
+
+    well_name: str
+    """The well that the pipette's primary nozzle targeted.
+
+    Wells in addition to this one will also be marked as used, depending on the
+    pipette's nozzle layout.
+    """
+
+
+@dataclasses.dataclass
+class LiquidLoadedUpdate:
+    """An update from loading a liquid."""
+
+    labware_id: str
+    volumes: typing.Dict[str, float]
+    last_loaded: datetime
+
+
+@dataclasses.dataclass
+class LiquidProbedUpdate:
+    """An update from probing a liquid."""
+
+    labware_id: str
+    well_name: str
+    last_probed: datetime
+    height: float | ClearType
+    volume: float | ClearType
+
+
+@dataclasses.dataclass
+class LiquidOperatedUpdate:
+    """An update from operating a liquid."""
+
+    labware_id: str
+    well_name: str
+    volume_added: float | ClearType
+
+
+@dataclasses.dataclass
+class AbsorbanceReaderLidUpdate:
+    """An update to an absorbance reader's lid location."""
+
+    module_id: str
+    is_lid_on: bool
+
+
+@dataclasses.dataclass
+class StateUpdate:
+    """Represents an update to perform on engine state."""
+
+    pipette_location: PipetteLocationUpdate | NoChangeType | ClearType = NO_CHANGE
+
+    loaded_pipette: LoadPipetteUpdate | NoChangeType = NO_CHANGE
+
+    pipette_config: PipetteConfigUpdate | NoChangeType = NO_CHANGE
+
+    pipette_nozzle_map: PipetteNozzleMapUpdate | NoChangeType = NO_CHANGE
+
+    pipette_tip_state: PipetteTipStateUpdate | NoChangeType = NO_CHANGE
+
+    labware_location: LabwareLocationUpdate | NoChangeType = NO_CHANGE
+
+    loaded_labware: LoadedLabwareUpdate | NoChangeType = NO_CHANGE
+
+    tips_used: TipsUsedUpdate | NoChangeType = NO_CHANGE
+
+    liquid_loaded: LiquidLoadedUpdate | NoChangeType = NO_CHANGE
+
+    liquid_probed: LiquidProbedUpdate | NoChangeType = NO_CHANGE
+
+    liquid_operated: LiquidOperatedUpdate | NoChangeType = NO_CHANGE
+
+    absorbance_reader_lid: AbsorbanceReaderLidUpdate | NoChangeType = NO_CHANGE
+
+    # These convenience functions let the caller avoid the boilerplate of constructing a
+    # complicated dataclass tree.
+
+    @typing.overload
+    def set_pipette_location(
+        self,
+        *,
+        pipette_id: str,
+        new_labware_id: str,
+        new_well_name: str,
+        new_deck_point: DeckPoint,
+    ) -> None:
+        """Schedule a pipette's location to be set to a well."""
+
+    @typing.overload
+    def set_pipette_location(
+        self,
+        *,
+        pipette_id: str,
+        new_addressable_area_name: str,
+        new_deck_point: DeckPoint,
+    ) -> None:
+        """Schedule a pipette's location to be set to an addressable area."""
+        pass
+
+    def set_pipette_location(  # noqa: D102
+        self,
+        *,
+        pipette_id: str,
+        new_labware_id: str | NoChangeType = NO_CHANGE,
+        new_well_name: str | NoChangeType = NO_CHANGE,
+        new_addressable_area_name: str | NoChangeType = NO_CHANGE,
+        new_deck_point: DeckPoint,
+    ) -> None:
+        if new_addressable_area_name != NO_CHANGE:
+            self.pipette_location = PipetteLocationUpdate(
+                pipette_id=pipette_id,
+                new_location=AddressableArea(
+                    addressable_area_name=new_addressable_area_name
+                ),
+                new_deck_point=new_deck_point,
+            )
+        else:
+            # These asserts should always pass because of the overloads.
+            assert new_labware_id != NO_CHANGE
+            assert new_well_name != NO_CHANGE
+
+            self.pipette_location = PipetteLocationUpdate(
+                pipette_id=pipette_id,
+                new_location=Well(labware_id=new_labware_id, well_name=new_well_name),
+                new_deck_point=new_deck_point,
+            )
+
+    def clear_all_pipette_locations(self) -> None:
+        """Mark all pipettes as having an unknown location."""
+        self.pipette_location = CLEAR
+
+    def set_labware_location(
+        self,
+        *,
+        labware_id: str,
+        new_location: LabwareLocation,
+        new_offset_id: str | None,
+    ) -> None:
+        """Set a labware's location. See `LabwareLocationUpdate`."""
+        self.labware_location = LabwareLocationUpdate(
+            labware_id=labware_id,
+            new_location=new_location,
+            offset_id=new_offset_id,
+        )
+
+    def set_loaded_labware(
+        self,
+        definition: LabwareDefinition,
+        labware_id: str,
+        offset_id: typing.Optional[str],
+        display_name: typing.Optional[str],
+        location: LabwareLocation,
+    ) -> None:
+        """Add a new labware to state. See `LoadedLabwareUpdate`."""
+        self.loaded_labware = LoadedLabwareUpdate(
+            definition=definition,
+            labware_id=labware_id,
+            offset_id=offset_id,
+            new_location=location,
+            display_name=display_name,
+        )
+
+    def set_load_pipette(
+        self,
+        pipette_id: str,
+        pipette_name: PipetteNameType,
+        mount: MountType,
+        liquid_presence_detection: typing.Optional[bool],
+    ) -> None:
+        """Add a new pipette to state. See `LoadPipetteUpdate`."""
+        self.loaded_pipette = LoadPipetteUpdate(
+            pipette_id=pipette_id,
+            pipette_name=pipette_name,
+            mount=mount,
+            liquid_presence_detection=liquid_presence_detection,
+        )
+
+    def update_pipette_config(
+        self,
+        pipette_id: str,
+        config: pipette_data_provider.LoadedStaticPipetteData,
+        serial_number: str,
+    ) -> None:
+        """Update a pipette's config. See `PipetteConfigUpdate`."""
+        self.pipette_config = PipetteConfigUpdate(
+            pipette_id=pipette_id, config=config, serial_number=serial_number
+        )
+
+    def update_pipette_nozzle(self, pipette_id: str, nozzle_map: NozzleMap) -> None:
+        """Update a pipette's nozzle map. See `PipetteNozzleMapUpdate`."""
+        self.pipette_nozzle_map = PipetteNozzleMapUpdate(
+            pipette_id=pipette_id, nozzle_map=nozzle_map
+        )
+
+    def update_pipette_tip_state(
+        self, pipette_id: str, tip_geometry: typing.Optional[TipGeometry]
+    ) -> None:
+        """Update a pipette's tip state. See `PipetteTipStateUpdate`."""
+        self.pipette_tip_state = PipetteTipStateUpdate(
+            pipette_id=pipette_id, tip_geometry=tip_geometry
+        )
+
+    def mark_tips_as_used(
+        self, pipette_id: str, labware_id: str, well_name: str
+    ) -> None:
+        """Mark tips in a tip rack as used. See `TipsUsedUpdate`."""
+        self.tips_used = TipsUsedUpdate(
+            pipette_id=pipette_id, labware_id=labware_id, well_name=well_name
+        )
+
+    def set_liquid_loaded(
+        self,
+        labware_id: str,
+        volumes: typing.Dict[str, float],
+        last_loaded: datetime,
+    ) -> None:
+        """Add liquid volumes to well state. See `LoadLiquidUpdate`."""
+        self.liquid_loaded = LiquidLoadedUpdate(
+            labware_id=labware_id,
+            volumes=volumes,
+            last_loaded=last_loaded,
+        )
+
+    def set_liquid_probed(
+        self,
+        labware_id: str,
+        well_name: str,
+        last_probed: datetime,
+        height: float | ClearType,
+        volume: float | ClearType,
+    ) -> None:
+        """Add a liquid height and volume to well state. See `ProbeLiquidUpdate`."""
+        self.liquid_probed = LiquidProbedUpdate(
+            labware_id=labware_id,
+            well_name=well_name,
+            height=height,
+            volume=volume,
+            last_probed=last_probed,
+        )
+
+    def set_liquid_operated(
+        self, labware_id: str, well_name: str, volume_added: float | ClearType
+    ) -> None:
+        """Update liquid volumes in well state. See `OperateLiquidUpdate`."""
+        self.liquid_operated = LiquidOperatedUpdate(
+            labware_id=labware_id,
+            well_name=well_name,
+            volume_added=volume_added,
+        )
+
+    def set_absorbance_reader_lid(self, module_id: str, is_lid_on: bool) -> None:
+        """Update an absorbance reader's lid location. See `AbsorbanceReaderLidUpdate`."""
+        self.absorbance_reader_lid = AbsorbanceReaderLidUpdate(
+            module_id=module_id, is_lid_on=is_lid_on
+        )

opentrons/protocol_engine/state/wells.py

@@ -0,0 +1,236 @@
+"""Basic well data state and store."""
+from dataclasses import dataclass
+from typing import Dict, List, Union, Iterator, Optional, Tuple, overload, TypeVar
+
+from opentrons.protocol_engine.types import (
+    ProbedHeightInfo,
+    ProbedVolumeInfo,
+    LoadedVolumeInfo,
+    WellInfoSummary,
+    WellLiquidInfo,
+)
+
+from . import update_types
+from ._abstract_store import HasState, HandlesActions
+from ..actions import Action
+from ..actions.get_state_update import get_state_updates
+
+
+LabwareId = str
+WellName = str
+
+
+@dataclass
+class WellState:
+    """State of all wells."""
+
+    loaded_volumes: Dict[LabwareId, Dict[WellName, LoadedVolumeInfo]]
+    probed_heights: Dict[LabwareId, Dict[WellName, ProbedHeightInfo]]
+    probed_volumes: Dict[LabwareId, Dict[WellName, ProbedVolumeInfo]]
+
+
+class WellStore(HasState[WellState], HandlesActions):
+    """Well state container."""
+
+    _state: WellState
+
+    def __init__(self) -> None:
+        """Initialize a well store and its state."""
+        self._state = WellState(loaded_volumes={}, probed_heights={}, probed_volumes={})
+
+    def handle_action(self, action: Action) -> None:
+        """Modify state in reaction to an action."""
+        for state_update in get_state_updates(action):
+            if state_update.liquid_loaded != update_types.NO_CHANGE:
+                self._handle_liquid_loaded_update(state_update.liquid_loaded)
+            if state_update.liquid_probed != update_types.NO_CHANGE:
+                self._handle_liquid_probed_update(state_update.liquid_probed)
+            if state_update.liquid_operated != update_types.NO_CHANGE:
+                self._handle_liquid_operated_update(state_update.liquid_operated)
+
+    def _handle_liquid_loaded_update(
+        self, state_update: update_types.LiquidLoadedUpdate
+    ) -> None:
+        labware_id = state_update.labware_id
+        if labware_id not in self._state.loaded_volumes:
+            self._state.loaded_volumes[labware_id] = {}
+        for (well, volume) in state_update.volumes.items():
+            self._state.loaded_volumes[labware_id][well] = LoadedVolumeInfo(
+                volume=_none_from_clear(volume),
+                last_loaded=state_update.last_loaded,
+                operations_since_load=0,
+            )
+
+    def _handle_liquid_probed_update(
+        self, state_update: update_types.LiquidProbedUpdate
+    ) -> None:
+        labware_id = state_update.labware_id
+        well_name = state_update.well_name
+        if labware_id not in self._state.probed_heights:
+            self._state.probed_heights[labware_id] = {}
+        if labware_id not in self._state.probed_volumes:
+            self._state.probed_volumes[labware_id] = {}
+        self._state.probed_heights[labware_id][well_name] = ProbedHeightInfo(
+            height=_none_from_clear(state_update.height),
+            last_probed=state_update.last_probed,
+        )
+        self._state.probed_volumes[labware_id][well_name] = ProbedVolumeInfo(
+            volume=_none_from_clear(state_update.volume),
+            last_probed=state_update.last_probed,
+            operations_since_probe=0,
+        )
+
+    def _handle_liquid_operated_update(
+        self, state_update: update_types.LiquidOperatedUpdate
+    ) -> None:
+        labware_id = state_update.labware_id
+        well_name = state_update.well_name
+        if (
+            labware_id in self._state.loaded_volumes
+            and well_name in self._state.loaded_volumes[labware_id]
+        ):
+            if state_update.volume_added is update_types.CLEAR:
+                del self._state.loaded_volumes[labware_id][well_name]
+            else:
+                prev_loaded_vol_info = self._state.loaded_volumes[labware_id][well_name]
+                assert prev_loaded_vol_info.volume is not None
+                self._state.loaded_volumes[labware_id][well_name] = LoadedVolumeInfo(
+                    volume=prev_loaded_vol_info.volume + state_update.volume_added,
+                    last_loaded=prev_loaded_vol_info.last_loaded,
+                    operations_since_load=prev_loaded_vol_info.operations_since_load
+                    + 1,
+                )
+        if (
+            labware_id in self._state.probed_heights
+            and well_name in self._state.probed_heights[labware_id]
+        ):
+            del self._state.probed_heights[labware_id][well_name]
+        if (
+            labware_id in self._state.probed_volumes
+            and well_name in self._state.probed_volumes[labware_id]
+        ):
+            if state_update.volume_added is update_types.CLEAR:
+                del self._state.probed_volumes[labware_id][well_name]
+            else:
+                prev_probed_vol_info = self._state.probed_volumes[labware_id][well_name]
+                if prev_probed_vol_info.volume is None:
+                    new_vol_info: float | None = None
+                else:
+                    new_vol_info = (
+                        prev_probed_vol_info.volume + state_update.volume_added
+                    )
+                self._state.probed_volumes[labware_id][well_name] = ProbedVolumeInfo(
+                    volume=new_vol_info,
+                    last_probed=prev_probed_vol_info.last_probed,
+                    operations_since_probe=prev_probed_vol_info.operations_since_probe
+                    + 1,
+                )
+
+
+class WellView(HasState[WellState]):
+    """Read-only well state view."""
+
+    _state: WellState
+
+    def __init__(self, state: WellState) -> None:
+        """Initialize the computed view of well state.
+
+        Arguments:
+            state: Well state dataclass used for all calculations.
+        """
+        self._state = state
+
+    def get_well_liquid_info(self, labware_id: str, well_name: str) -> WellLiquidInfo:
+        """Return all the liquid info for a well."""
+        if (
+            labware_id not in self._state.loaded_volumes
+            or well_name not in self._state.loaded_volumes[labware_id]
+        ):
+            loaded_volume_info = None
+        else:
+            loaded_volume_info = self._state.loaded_volumes[labware_id][well_name]
+        if (
+            labware_id not in self._state.probed_heights
+            or well_name not in self._state.probed_heights[labware_id]
+        ):
+            probed_height_info = None
+        else:
+            probed_height_info = self._state.probed_heights[labware_id][well_name]
+        if (
+            labware_id not in self._state.probed_volumes
+            or well_name not in self._state.probed_volumes[labware_id]
+        ):
+            probed_volume_info = None
+        else:
+            probed_volume_info = self._state.probed_volumes[labware_id][well_name]
+        return WellLiquidInfo(
+            loaded_volume=loaded_volume_info,
+            probed_height=probed_height_info,
+            probed_volume=probed_volume_info,
+        )
+
+    def get_all(self) -> List[WellInfoSummary]:
+        """Get all well liquid info summaries."""
+
+        def _all_well_combos() -> Iterator[Tuple[str, str, str]]:
+            for labware, lv_wells in self._state.loaded_volumes.items():
+                for well_name in lv_wells.keys():
+                    yield f"{labware}{well_name}", labware, well_name
+            for labware, ph_wells in self._state.probed_heights.items():
+                for well_name in ph_wells.keys():
+                    yield f"{labware}{well_name}", labware, well_name
+            for labware, pv_wells in self._state.probed_volumes.items():
+                for well_name in pv_wells.keys():
+                    yield f"{labware}{well_name}", labware, well_name
+
+        wells = {
+            key: (labware_id, well_name)
+            for key, labware_id, well_name in _all_well_combos()
+        }
+        return [
+            self._summarize_well(labware_id, well_name)
+            for labware_id, well_name in wells.values()
+        ]
+
+    def _summarize_well(self, labware_id: str, well_name: str) -> WellInfoSummary:
+        well_liquid_info = self.get_well_liquid_info(labware_id, well_name)
+        return WellInfoSummary(
+            labware_id=labware_id,
+            well_name=well_name,
+            loaded_volume=_volume_from_info(well_liquid_info.loaded_volume),
+            probed_volume=_volume_from_info(well_liquid_info.probed_volume),
+            probed_height=_height_from_info(well_liquid_info.probed_height),
+        )
+
+
+@overload
+def _volume_from_info(info: Optional[ProbedVolumeInfo]) -> Optional[float]:
+    ...
+
+
+@overload
+def _volume_from_info(info: Optional[LoadedVolumeInfo]) -> Optional[float]:
+    ...
+
+
+def _volume_from_info(
+    info: Union[ProbedVolumeInfo, LoadedVolumeInfo, None]
+) -> Optional[float]:
+    if info is None:
+        return None
+    return info.volume
+
+
+def _height_from_info(info: Optional[ProbedHeightInfo]) -> Optional[float]:
+    if info is None:
+        return None
+    return info.height
+
+
+MaybeClear = TypeVar("MaybeClear")
+
+
+def _none_from_clear(inval: MaybeClear | update_types.ClearType) -> MaybeClear | None:
+    if inval == update_types.CLEAR:
+        return None
+    return inval