opentrons-shared-data 8.8.0a6__py3-none-any.whl → 9.0.0a2__py3-none-any.whl

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Files changed (97) hide show
  1. opentrons_shared_data/__init__.py +1 -2
  2. opentrons_shared_data/_version.py +2 -2
  3. opentrons_shared_data/command/__init__.py +6 -6
  4. opentrons_shared_data/data/command/schemas/16.json +7690 -0
  5. opentrons_shared_data/data/commandAnnotation/schemas/2.json +105 -0
  6. opentrons_shared_data/data/deck/definitions/5/ot3_standard.json +24 -0
  7. opentrons_shared_data/data/labware/definitions/2/black_96_well_microtiter_plate_lid/2.json +110 -0
  8. opentrons_shared_data/data/labware/definitions/2/corning_96_wellplate_360ul_lid/2.json +117 -0
  9. opentrons_shared_data/data/labware/definitions/2/corning_falcon_384_wellplate_130ul_flat_lid/2.json +118 -0
  10. opentrons_shared_data/data/labware/definitions/2/opentrons_tough_pcr_auto_sealing_lid/2.json +2 -2
  11. opentrons_shared_data/data/labware/definitions/2/thermofisher_nunc_maxisorp_lockwell_elisa/1.json +1168 -0
  12. opentrons_shared_data/data/liquid-class/definitions/1/water/3.json +7880 -0
  13. opentrons_shared_data/data/liquid-class/schemas/1.json +3 -0
  14. opentrons_shared_data/data/module/definitions/3/vacuumModuleMilliporeV1.json +70 -0
  15. opentrons_shared_data/data/module/schemas/3.json +3 -2
  16. opentrons_shared_data/data/pipette/definitions/2/general/eight_channel/p50/3_0.json +27 -9
  17. opentrons_shared_data/data/pipette/definitions/2/general/eight_channel/p50/3_3.json +27 -9
  18. opentrons_shared_data/data/pipette/definitions/2/general/eight_channel/p50/3_4.json +53 -15
  19. opentrons_shared_data/data/pipette/definitions/2/general/eight_channel/p50/3_5.json +53 -15
  20. opentrons_shared_data/data/pipette/definitions/2/general/ninety_six_channel/p200/3_0.json +154 -13
  21. opentrons_shared_data/data/pipette/definitions/2/general/ninety_six_channel/p200/3_1.json +187 -18
  22. opentrons_shared_data/data/pipette/definitions/2/general/ninety_six_channel/p200/3_2.json +187 -18
  23. opentrons_shared_data/data/pipette/definitions/2/general/single_channel/p50/3_0.json +2 -0
  24. opentrons_shared_data/data/pipette/definitions/2/general/single_channel/p50/3_3.json +2 -0
  25. opentrons_shared_data/data/pipette/definitions/2/general/single_channel/p50/3_4.json +4 -0
  26. opentrons_shared_data/data/pipette/definitions/2/general/single_channel/p50/3_5.json +4 -0
  27. opentrons_shared_data/data/pipette/definitions/2/general/single_channel/p50/3_6.json +4 -0
  28. opentrons_shared_data/data/pipette/definitions/2/geometry/single_channel/p1000/2_2.json +2 -2
  29. opentrons_shared_data/data/pipette/definitions/2/geometry/single_channel/p1000/3_5.json +4 -0
  30. opentrons_shared_data/data/pipette/definitions/2/geometry/single_channel/p20/2_2.json +2 -2
  31. opentrons_shared_data/data/pipette/definitions/2/geometry/single_channel/p300/2_1.json +2 -2
  32. opentrons_shared_data/data/pipette/definitions/2/liquid/eight_channel/p50/default/3_0.json +67 -0
  33. opentrons_shared_data/data/pipette/definitions/2/liquid/eight_channel/p50/default/3_3.json +68 -1
  34. opentrons_shared_data/data/pipette/definitions/2/liquid/eight_channel/p50/default/3_4.json +67 -0
  35. opentrons_shared_data/data/pipette/definitions/2/liquid/eight_channel/p50/default/3_5.json +2 -0
  36. opentrons_shared_data/data/pipette/definitions/2/liquid/eight_channel/p50/lowVolumeDefault/3_0.json +67 -2
  37. opentrons_shared_data/data/pipette/definitions/2/liquid/eight_channel/p50/lowVolumeDefault/3_3.json +67 -2
  38. opentrons_shared_data/data/pipette/definitions/2/liquid/eight_channel/p50/lowVolumeDefault/3_4.json +67 -2
  39. opentrons_shared_data/data/pipette/definitions/2/liquid/eight_channel/p50/lowVolumeDefault/3_5.json +4 -2
  40. opentrons_shared_data/data/pipette/definitions/2/liquid/ninety_six_channel/p200/default/3_0.json +2 -1
  41. opentrons_shared_data/data/pipette/definitions/2/liquid/single_channel/p50/default/3_0.json +68 -1
  42. opentrons_shared_data/data/pipette/definitions/2/liquid/single_channel/p50/default/3_3.json +68 -1
  43. opentrons_shared_data/data/pipette/definitions/2/liquid/single_channel/p50/default/3_4.json +68 -1
  44. opentrons_shared_data/data/pipette/definitions/2/liquid/single_channel/p50/default/3_5.json +3 -1
  45. opentrons_shared_data/data/pipette/definitions/2/liquid/single_channel/p50/default/3_6.json +3 -1
  46. opentrons_shared_data/data/pipette/definitions/2/liquid/single_channel/p50/lowVolumeDefault/3_0.json +67 -2
  47. opentrons_shared_data/data/pipette/definitions/2/liquid/single_channel/p50/lowVolumeDefault/3_3.json +67 -2
  48. opentrons_shared_data/data/pipette/definitions/2/liquid/single_channel/p50/lowVolumeDefault/3_4.json +67 -2
  49. opentrons_shared_data/data/pipette/definitions/2/liquid/single_channel/p50/lowVolumeDefault/3_5.json +4 -2
  50. opentrons_shared_data/data/pipette/definitions/2/liquid/single_channel/p50/lowVolumeDefault/3_6.json +4 -2
  51. opentrons_shared_data/data_files/__init__.py +5 -6
  52. opentrons_shared_data/data_files/types.py +4 -2
  53. opentrons_shared_data/deck/__init__.py +11 -13
  54. opentrons_shared_data/deck/types.py +2 -2
  55. opentrons_shared_data/errors/__init__.py +2 -2
  56. opentrons_shared_data/errors/categories.py +2 -3
  57. opentrons_shared_data/errors/codes.py +3 -3
  58. opentrons_shared_data/errors/exceptions.py +13 -13
  59. opentrons_shared_data/gripper/__init__.py +7 -5
  60. opentrons_shared_data/gripper/gripper_definition.py +6 -4
  61. opentrons_shared_data/labware/__init__.py +5 -8
  62. opentrons_shared_data/labware/constants.py +1 -1
  63. opentrons_shared_data/labware/labware_definition.py +15 -14
  64. opentrons_shared_data/labware/types.py +5 -2
  65. opentrons_shared_data/liquid_classes/__init__.py +3 -2
  66. opentrons_shared_data/liquid_classes/liquid_class_definition.py +47 -22
  67. opentrons_shared_data/liquid_classes/types.py +5 -1
  68. opentrons_shared_data/load.py +2 -2
  69. opentrons_shared_data/module/__init__.py +12 -14
  70. opentrons_shared_data/module/types.py +7 -1
  71. opentrons_shared_data/pipette/__init__.py +9 -8
  72. opentrons_shared_data/pipette/dev_types.py +3 -3
  73. opentrons_shared_data/pipette/file_operation_helpers.py +2 -2
  74. opentrons_shared_data/pipette/load_data.py +8 -10
  75. opentrons_shared_data/pipette/model_constants.py +4 -4
  76. opentrons_shared_data/pipette/mutable_configurations.py +20 -20
  77. opentrons_shared_data/pipette/pipette_definition.py +7 -5
  78. opentrons_shared_data/pipette/pipette_load_name_conversions.py +11 -10
  79. opentrons_shared_data/pipette/scripts/build_json_script.py +11 -13
  80. opentrons_shared_data/pipette/scripts/update_configuration_files.py +17 -18
  81. opentrons_shared_data/pipette/types.py +1 -2
  82. opentrons_shared_data/pipette/ul_per_mm.py +1 -1
  83. opentrons_shared_data/protocol/__init__.py +2 -1
  84. opentrons_shared_data/protocol/constants.py +25 -82
  85. opentrons_shared_data/protocol/models/__init__.py +11 -10
  86. opentrons_shared_data/protocol/models/protocol_schema_v6.py +10 -9
  87. opentrons_shared_data/protocol/models/protocol_schema_v7.py +9 -9
  88. opentrons_shared_data/protocol/models/protocol_schema_v8.py +10 -8
  89. opentrons_shared_data/protocol/models/shared_models.py +2 -1
  90. opentrons_shared_data/protocol/types.py +4 -3
  91. opentrons_shared_data/robot/__init__.py +3 -3
  92. opentrons_shared_data/robot/types.py +4 -2
  93. opentrons_shared_data/util/__init__.py +21 -0
  94. {opentrons_shared_data-8.8.0a6.dist-info → opentrons_shared_data-9.0.0a2.dist-info}/METADATA +2 -1
  95. {opentrons_shared_data-8.8.0a6.dist-info → opentrons_shared_data-9.0.0a2.dist-info}/RECORD +97 -88
  96. {opentrons_shared_data-8.8.0a6.dist-info → opentrons_shared_data-9.0.0a2.dist-info}/WHEEL +0 -0
  97. {opentrons_shared_data-8.8.0a6.dist-info → opentrons_shared_data-9.0.0a2.dist-info}/licenses/LICENSE +0 -0
@@ -0,0 +1,105 @@
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+ {
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+ "$id": "opentronsCommandAnnotationSchemaV2#",
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+ "$schema": "http://json-schema.org/draft-07/schema#",
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+ "$defs": {
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+ "baseAnnotation": {
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+ "description": "Things all annotations have",
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+ "type": "object",
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+ "required": ["annotationType", "annotationId"],
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+ "properties": {
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+ "annotationId": {
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+ "description": "A unique identifier for a command annotation.",
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+ "type": "string"
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+ },
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+ "annotationType": {
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+ "description": "The type of annotation (for machine parsing)",
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+ "type": "string"
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+ },
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+ "parentAnnotation": {
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+ "description": "The parent annotation of this annotation, if any.",
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+ "type": "string"
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+ }
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+ }
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+ },
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+ "secondOrderCommand": {
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+ "description": "Annotates a group of atomic commands which were the direct result of a second order command (e.g. transfer, consolidate, mix)",
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+ "allOf": [{ "$ref": "#/$defs/baseAnnotation" }],
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+ "type": "object",
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+ "required": [
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+ "annotationType",
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+ "annotationId",
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+ "params",
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+ "machineReadableName"
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+ ],
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+ "properties": {
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+ "annotationType": {
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+ "type": "string",
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+ "enum": ["secondOrderCommand"]
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+ },
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+ "params": {
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+ "description": "key value pairs of the parameters that were passed to the second order command that this annotates",
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+ "type": "object"
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+ },
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+ "machineReadableName": {
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+ "description": "The name of the second order command in the form that the generating software refers to it. (e.g. 'transfer', 'thermocyclerStep')",
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+ "type": "string"
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+ },
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+ "userSpecifiedName": {
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+ "description": "The optional user-specified name of the second order command",
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+ "type": "string"
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+ },
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+ "userSpecifiedDescription": {
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+ "description": "The optional user-specified description of the second order command",
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+ "type": "string"
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+ }
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+ }
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+ },
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+ "userCommand": {
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+ "description": "A user generated command annotation as opposed to one generated automatically.",
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+ "allOf": [{ "$ref": "#/$defs/baseAnnotation" }],
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+ "type": "object",
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+ "required": [
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+ "annotationType",
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+ "annotationId",
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+ "params",
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+ "userSpecifiedName"
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+ ],
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+ "properties": {
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+ "annotationType": {
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+ "type": "string",
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+ "enum": ["userCommand"]
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+ },
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+ "params": {
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+ "description": "key value pairs of the parameters that were passed to the second order command that this annotates",
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+ "type": "object"
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+ },
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+ "userSpecifiedName": {
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+ "description": "The optional user-specified name of the second order command",
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+ "type": "string"
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+ },
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+ "userSpecifiedDescription": {
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+ "description": "The optional user-specified description of the second order command",
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+ "type": "string"
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+ }
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+ }
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+ },
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+ "custom": {
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+ "description": "Annotates a group of atomic commands in some manner that Opentrons software does not anticipate or originate",
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+ "allOf": [{ "$ref": "#/$defs/baseAnnotation" }],
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+ "type": "object",
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+ "required": ["annotationType", "annotationId"],
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+ "properties": {
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+ "annotationType": {
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+ "type": "string",
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+ "enum": ["custom"]
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+ }
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+ },
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+ "additionalProperties": true
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+ }
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+ },
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+ "oneOf": [
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+ { "$ref": "#/$defs/secondOrderCommand" },
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+ { "$ref": "#/$defs/userCommand" },
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+ { "$ref": "#/$defs/custom" }
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+ ]
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+ }
@@ -975,6 +975,19 @@
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  "displayName": "Flex Stacker in A4",
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  "features": {},
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  "orientation": "right"
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+ },
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+ {
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+ "id": "vacuumModuleMilliporeV1A3",
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+ "areaType": "vacuumModule",
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+ "offsetFromCutoutFixture": [161.0, 0.0, 31.0],
983
+ "boundingBox": {
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+ "xDimension": 128.0,
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+ "yDimension": 86.0,
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+ "zDimension": 0
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+ },
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+ "displayName": "Vacuum Module in A3",
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+ "features": {},
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+ "orientation": "right"
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  }
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  ],
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  "cutouts": [
@@ -1400,6 +1413,17 @@
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  },
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  "fixtureGroup": {},
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  "height": 10.65
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+ },
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+ {
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+ "id": "vacuumModuleMilliporeV1",
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+ "expectOpentronsModuleSerialNumber": true,
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+ "mayMountTo": ["cutoutA3"],
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+ "displayName": "Slot With a Vacuum Module Millipore Base",
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+ "providesAddressableAreas": {
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+ "cutoutA3": ["vacuumModuleMilliporeV1A3", "A4"]
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+ },
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+ "fixtureGroup": {},
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+ "height": 10.65
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  }
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  ],
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  "gripperOffsets": {
@@ -0,0 +1,110 @@
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+ {
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+ "allowedRoles": ["labware", "lid"],
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+ "ordering": [],
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+ "brand": {
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+ "brand": "greiner",
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+ "brandId": []
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+ },
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+ "metadata": {
9
+ "displayName": "Black 96-well Microtiter Plate Lid",
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+ "displayCategory": "lid",
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+ "displayVolumeUnits": "\u00b5L",
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+ "tags": []
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+ },
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+ "dimensions": {
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+ "xDimension": 127.5,
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+ "yDimension": 85,
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+ "zDimension": 10
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+ },
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+ "wells": {},
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+ "groups": [
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+ {
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+ "metadata": {},
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+ "wells": []
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+ }
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+ ],
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+ "cornerOffsetFromSlot": {
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+ "x": 0,
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+ "y": 0,
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+ "z": 0
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+ },
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+ "parameters": {
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+ "format": "irregular",
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+ "quirks": ["stackingMaxFive"],
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+ "isTiprack": false,
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+ "isMagneticModuleCompatible": false,
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+ "loadName": "black_96_well_microtiter_plate_lid"
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+ },
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+ "namespace": "opentrons",
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+ "version": 2,
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+ "schemaVersion": 2,
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+ "stackingOffsetWithLabware": {
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+ "milliplex_r_96_well_microtiter_plate": {
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+ "x": 0,
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+ "y": 0,
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+ "z": 7.4
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+ },
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+ "black_96_well_microtiter_plate_lid": {
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+ "x": 0,
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+ "y": 0,
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+ "z": 1
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+ },
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+ "opentrons_flex_deck_riser": {
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+ "x": 0,
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+ "y": 0,
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+ "z": 34
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+ },
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+ "protocol_engine_lid_stack_object": {
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+ "x": 0,
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+ "y": 0,
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+ "z": 0
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+ }
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+ },
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+ "stackLimit": 5,
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+ "compatibleParentLabware": [
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+ "protocol_engine_lid_stack_object",
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+ "opentrons_flex_deck_riser",
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+ "milliplex_r_96_well_microtiter_plate",
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+ "black_96_well_microtiter_plate_lid"
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+ ],
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+ "gripForce": 10,
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+ "gripHeightFromLabwareBottom": 7,
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+ "gripperOffsets": {
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+ "default": {
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+ "pickUpOffset": {
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+ "x": 0,
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+ "y": 0,
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+ "z": 0
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+ },
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+ "dropOffset": {
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+ "x": 0,
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+ "y": 0,
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+ "z": -5
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+ }
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+ },
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+ "lidOffsets": {
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+ "pickUpOffset": {
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+ "x": 0,
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+ "y": 0,
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+ "z": -5
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+ },
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+ "dropOffset": {
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+ "x": 0,
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+ "y": 0,
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+ "z": -5
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+ }
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+ },
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+ "lidDisposalOffsets": {
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+ "pickUpOffset": {
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+ "x": 0,
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+ "y": 0,
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+ "z": 0
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+ },
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+ "dropOffset": {
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+ "x": 0,
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+ "y": 5.0,
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+ "z": 50.0
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+ }
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+ }
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+ }
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+ }
@@ -0,0 +1,117 @@
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+ {
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+ "allowedRoles": ["labware", "lid"],
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+ "ordering": [],
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+ "brand": {
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+ "brand": "Corning",
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+ "brandId": []
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+ },
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+ "metadata": {
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+ "displayName": "Corning 96 Wellplate 360ul Lid",
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+ "displayCategory": "lid",
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+ "displayVolumeUnits": "\u00b5L",
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+ "tags": []
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+ },
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+ "dimensions": {
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+ "xDimension": 127,
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+ "yDimension": 85,
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+ "zDimension": 10
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+ },
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+ "wells": {},
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+ "groups": [
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+ {
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+ "metadata": {},
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+ "wells": []
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+ }
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+ ],
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+ "cornerOffsetFromSlot": {
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+ "x": 0,
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+ "y": 0,
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+ "z": 0
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+ },
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+ "parameters": {
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+ "format": "irregular",
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+ "quirks": ["stackingMaxFive"],
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+ "isTiprack": false,
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+ "isMagneticModuleCompatible": false,
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+ "loadName": "corning_96_wellplate_360ul_lid"
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+ },
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+ "namespace": "opentrons",
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+ "version": 2,
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+ "schemaVersion": 2,
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+ "stackingOffsetWithModule": {
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+ "thermocyclerModuleV2": {
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+ "x": 0,
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+ "y": 0,
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+ "z": 0
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+ }
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+ },
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+ "stackingOffsetWithLabware": {
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+ "corning_96_wellplate_360ul_flat": {
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+ "x": 0,
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+ "y": 0,
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+ "z": 6.5
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+ },
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+ "corning_96_wellplate_360ul_lid": {
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+ "x": 0,
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+ "y": 0,
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+ "z": 1
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+ },
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+ "opentrons_flex_deck_riser": {
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+ "x": 0,
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+ "y": 0,
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+ "z": 34
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+ },
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+ "protocol_engine_lid_stack_object": {
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+ "x": 0,
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+ "y": 0,
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+ "z": 0
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+ }
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+ },
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+ "stackLimit": 5,
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+ "compatibleParentLabware": [
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+ "protocol_engine_lid_stack_object",
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+ "opentrons_flex_deck_riser",
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+ "corning_96_wellplate_360ul_flat",
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+ "corning_96_wellplate_360ul_lid"
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+ ],
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+ "gripForce": 10,
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+ "gripHeightFromLabwareBottom": 7,
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+ "gripperOffsets": {
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+ "default": {
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+ "pickUpOffset": {
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+ "x": 0,
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+ "y": 0,
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+ "z": 0
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+ },
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+ "dropOffset": {
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+ "x": 0,
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+ "y": 0,
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+ "z": -6
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+ }
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+ },
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+ "lidOffsets": {
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+ "pickUpOffset": {
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+ "x": 0.5,
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+ "y": 0,
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+ "z": -5
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+ },
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+ "dropOffset": {
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+ "x": 0.5,
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+ "y": 0,
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+ "z": -1
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+ }
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+ },
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+ "lidDisposalOffsets": {
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+ "pickUpOffset": {
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+ "x": 0,
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+ "y": 0,
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+ "z": 0
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+ },
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+ "dropOffset": {
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+ "x": 0,
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+ "y": 5.0,
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+ "z": 50.0
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+ }
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+ }
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+ }
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+ }
@@ -0,0 +1,118 @@
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+ {
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+ "allowedRoles": ["labware", "lid"],
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+ "ordering": [],
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+ "brand": {
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+ "brand": "Corning",
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+ "brandId": []
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+ },
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+ "metadata": {
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+ "displayName": "Corning Falcon 384 Well Microtest Plate 130 µL Lid",
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+ "displayCategory": "lid",
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+ "displayVolumeUnits": "\u00b5L",
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+ "tags": []
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+ },
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+ "dimensions": {
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+ "xDimension": 127,
16
+ "yDimension": 84.8,
17
+ "zDimension": 6.85
18
+ },
19
+ "wells": {},
20
+ "groups": [
21
+ {
22
+ "metadata": {},
23
+ "wells": []
24
+ }
25
+ ],
26
+ "cornerOffsetFromSlot": {
27
+ "x": 0,
28
+ "y": 0,
29
+ "z": 0
30
+ },
31
+ "parameters": {
32
+ "format": "irregular",
33
+ "quirks": [],
34
+ "isTiprack": false,
35
+ "isMagneticModuleCompatible": false,
36
+ "loadName": "corning_falcon_384_wellplate_130ul_flat_lid"
37
+ },
38
+ "namespace": "opentrons",
39
+ "version": 2,
40
+ "schemaVersion": 2,
41
+ "stackingOffsetWithModule": {
42
+ "thermocyclerModuleV2": {
43
+ "x": 0,
44
+ "y": 0,
45
+ "z": 0
46
+ }
47
+ },
48
+ "stackingOffsetWithLabware": {
49
+ "corning_falcon_384_wellplate_130ul_flat": {
50
+ "x": 0,
51
+ "y": 0,
52
+ "z": 2.1
53
+ },
54
+ "corning_falcon_384_wellplate_130ul_flat_lid": {
55
+ "x": 0,
56
+ "y": 0,
57
+ "z": 5.9
58
+ },
59
+ "opentrons_flex_deck_riser": {
60
+ "x": 0,
61
+ "y": 0,
62
+ "z": 28
63
+ },
64
+ "protocol_engine_lid_stack_object": {
65
+ "x": 0,
66
+ "y": 0,
67
+ "z": 0
68
+ }
69
+ },
70
+ "stackLimit": 5,
71
+ "compatibleParentLabware": [
72
+ "protocol_engine_lid_stack_object",
73
+ "opentrons_flex_deck_riser",
74
+ "corning_falcon_384_wellplate_130ul_flat",
75
+ "corning_falcon_384_wellplate_130ul_flat_lid",
76
+ "opentrons_universal_flat_adapter"
77
+ ],
78
+ "gripForce": 10,
79
+ "gripHeightFromLabwareBottom": 7,
80
+ "gripperOffsets": {
81
+ "default": {
82
+ "pickUpOffset": {
83
+ "x": 0,
84
+ "y": 0,
85
+ "z": 0
86
+ },
87
+ "dropOffset": {
88
+ "x": 0,
89
+ "y": 0,
90
+ "z": -6
91
+ }
92
+ },
93
+ "lidOffsets": {
94
+ "pickUpOffset": {
95
+ "x": 0.5,
96
+ "y": 0,
97
+ "z": -5
98
+ },
99
+ "dropOffset": {
100
+ "x": 0.5,
101
+ "y": 0,
102
+ "z": -1
103
+ }
104
+ },
105
+ "lidDisposalOffsets": {
106
+ "pickUpOffset": {
107
+ "x": 0,
108
+ "y": 0,
109
+ "z": 0
110
+ },
111
+ "dropOffset": {
112
+ "x": 0,
113
+ "y": 5.0,
114
+ "z": 50.0
115
+ }
116
+ }
117
+ }
118
+ }
@@ -98,12 +98,12 @@
98
98
  "pickUpOffset": {
99
99
  "x": 0,
100
100
  "y": 0,
101
- "z": 1.5
101
+ "z": 0
102
102
  },
103
103
  "dropOffset": {
104
104
  "x": 0,
105
105
  "y": 0.52,
106
- "z": -6
106
+ "z": 0
107
107
  }
108
108
  },
109
109
  "lidOffsets": {