multipers 2.3.3b6__cp312-cp312-macosx_10_13_x86_64.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
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- multipers/.dylibs/libc++.1.0.dylib +0 -0
- multipers/.dylibs/libtbb.12.16.dylib +0 -0
- multipers/__init__.py +33 -0
- multipers/_signed_measure_meta.py +453 -0
- multipers/_slicer_meta.py +211 -0
- multipers/array_api/__init__.py +45 -0
- multipers/array_api/numpy.py +41 -0
- multipers/array_api/torch.py +58 -0
- multipers/data/MOL2.py +458 -0
- multipers/data/UCR.py +18 -0
- multipers/data/__init__.py +1 -0
- multipers/data/graphs.py +466 -0
- multipers/data/immuno_regions.py +27 -0
- multipers/data/minimal_presentation_to_st_bf.py +0 -0
- multipers/data/pytorch2simplextree.py +91 -0
- multipers/data/shape3d.py +101 -0
- multipers/data/synthetic.py +113 -0
- multipers/distances.py +202 -0
- multipers/filtration_conversions.pxd +229 -0
- multipers/filtration_conversions.pxd.tp +84 -0
- multipers/filtrations/__init__.py +18 -0
- multipers/filtrations/density.py +574 -0
- multipers/filtrations/filtrations.py +361 -0
- multipers/filtrations.pxd +224 -0
- multipers/function_rips.cpython-312-darwin.so +0 -0
- multipers/function_rips.pyx +105 -0
- multipers/grids.cpython-312-darwin.so +0 -0
- multipers/grids.pyx +433 -0
- multipers/gudhi/Persistence_slices_interface.h +132 -0
- multipers/gudhi/Simplex_tree_interface.h +239 -0
- multipers/gudhi/Simplex_tree_multi_interface.h +551 -0
- multipers/gudhi/cubical_to_boundary.h +59 -0
- multipers/gudhi/gudhi/Bitmap_cubical_complex.h +450 -0
- multipers/gudhi/gudhi/Bitmap_cubical_complex_base.h +1070 -0
- multipers/gudhi/gudhi/Bitmap_cubical_complex_periodic_boundary_conditions_base.h +579 -0
- multipers/gudhi/gudhi/Debug_utils.h +45 -0
- multipers/gudhi/gudhi/Fields/Multi_field.h +484 -0
- multipers/gudhi/gudhi/Fields/Multi_field_operators.h +455 -0
- multipers/gudhi/gudhi/Fields/Multi_field_shared.h +450 -0
- multipers/gudhi/gudhi/Fields/Multi_field_small.h +531 -0
- multipers/gudhi/gudhi/Fields/Multi_field_small_operators.h +507 -0
- multipers/gudhi/gudhi/Fields/Multi_field_small_shared.h +531 -0
- multipers/gudhi/gudhi/Fields/Z2_field.h +355 -0
- multipers/gudhi/gudhi/Fields/Z2_field_operators.h +376 -0
- multipers/gudhi/gudhi/Fields/Zp_field.h +420 -0
- multipers/gudhi/gudhi/Fields/Zp_field_operators.h +400 -0
- multipers/gudhi/gudhi/Fields/Zp_field_shared.h +418 -0
- multipers/gudhi/gudhi/Flag_complex_edge_collapser.h +337 -0
- multipers/gudhi/gudhi/Matrix.h +2107 -0
- multipers/gudhi/gudhi/Multi_critical_filtration.h +1038 -0
- multipers/gudhi/gudhi/Multi_persistence/Box.h +174 -0
- multipers/gudhi/gudhi/Multi_persistence/Line.h +282 -0
- multipers/gudhi/gudhi/Off_reader.h +173 -0
- multipers/gudhi/gudhi/One_critical_filtration.h +1441 -0
- multipers/gudhi/gudhi/Persistence_matrix/Base_matrix.h +769 -0
- multipers/gudhi/gudhi/Persistence_matrix/Base_matrix_with_column_compression.h +686 -0
- multipers/gudhi/gudhi/Persistence_matrix/Boundary_matrix.h +842 -0
- multipers/gudhi/gudhi/Persistence_matrix/Chain_matrix.h +1350 -0
- multipers/gudhi/gudhi/Persistence_matrix/Id_to_index_overlay.h +1105 -0
- multipers/gudhi/gudhi/Persistence_matrix/Position_to_index_overlay.h +859 -0
- multipers/gudhi/gudhi/Persistence_matrix/RU_matrix.h +910 -0
- multipers/gudhi/gudhi/Persistence_matrix/allocators/entry_constructors.h +139 -0
- multipers/gudhi/gudhi/Persistence_matrix/base_pairing.h +230 -0
- multipers/gudhi/gudhi/Persistence_matrix/base_swap.h +211 -0
- multipers/gudhi/gudhi/Persistence_matrix/boundary_cell_position_to_id_mapper.h +60 -0
- multipers/gudhi/gudhi/Persistence_matrix/boundary_face_position_to_id_mapper.h +60 -0
- multipers/gudhi/gudhi/Persistence_matrix/chain_pairing.h +136 -0
- multipers/gudhi/gudhi/Persistence_matrix/chain_rep_cycles.h +190 -0
- multipers/gudhi/gudhi/Persistence_matrix/chain_vine_swap.h +616 -0
- multipers/gudhi/gudhi/Persistence_matrix/columns/chain_column_extra_properties.h +150 -0
- multipers/gudhi/gudhi/Persistence_matrix/columns/column_dimension_holder.h +106 -0
- multipers/gudhi/gudhi/Persistence_matrix/columns/column_utilities.h +219 -0
- multipers/gudhi/gudhi/Persistence_matrix/columns/entry_types.h +327 -0
- multipers/gudhi/gudhi/Persistence_matrix/columns/heap_column.h +1140 -0
- multipers/gudhi/gudhi/Persistence_matrix/columns/intrusive_list_column.h +934 -0
- multipers/gudhi/gudhi/Persistence_matrix/columns/intrusive_set_column.h +934 -0
- multipers/gudhi/gudhi/Persistence_matrix/columns/list_column.h +980 -0
- multipers/gudhi/gudhi/Persistence_matrix/columns/naive_vector_column.h +1092 -0
- multipers/gudhi/gudhi/Persistence_matrix/columns/row_access.h +192 -0
- multipers/gudhi/gudhi/Persistence_matrix/columns/set_column.h +921 -0
- multipers/gudhi/gudhi/Persistence_matrix/columns/small_vector_column.h +1093 -0
- multipers/gudhi/gudhi/Persistence_matrix/columns/unordered_set_column.h +1012 -0
- multipers/gudhi/gudhi/Persistence_matrix/columns/vector_column.h +1244 -0
- multipers/gudhi/gudhi/Persistence_matrix/matrix_dimension_holders.h +186 -0
- multipers/gudhi/gudhi/Persistence_matrix/matrix_row_access.h +164 -0
- multipers/gudhi/gudhi/Persistence_matrix/ru_pairing.h +156 -0
- multipers/gudhi/gudhi/Persistence_matrix/ru_rep_cycles.h +376 -0
- multipers/gudhi/gudhi/Persistence_matrix/ru_vine_swap.h +540 -0
- multipers/gudhi/gudhi/Persistent_cohomology/Field_Zp.h +118 -0
- multipers/gudhi/gudhi/Persistent_cohomology/Multi_field.h +173 -0
- multipers/gudhi/gudhi/Persistent_cohomology/Persistent_cohomology_column.h +128 -0
- multipers/gudhi/gudhi/Persistent_cohomology.h +745 -0
- multipers/gudhi/gudhi/Points_off_io.h +171 -0
- multipers/gudhi/gudhi/Simple_object_pool.h +69 -0
- multipers/gudhi/gudhi/Simplex_tree/Simplex_tree_iterators.h +463 -0
- multipers/gudhi/gudhi/Simplex_tree/Simplex_tree_node_explicit_storage.h +83 -0
- multipers/gudhi/gudhi/Simplex_tree/Simplex_tree_siblings.h +106 -0
- multipers/gudhi/gudhi/Simplex_tree/Simplex_tree_star_simplex_iterators.h +277 -0
- multipers/gudhi/gudhi/Simplex_tree/hooks_simplex_base.h +62 -0
- multipers/gudhi/gudhi/Simplex_tree/indexing_tag.h +27 -0
- multipers/gudhi/gudhi/Simplex_tree/serialization_utils.h +62 -0
- multipers/gudhi/gudhi/Simplex_tree/simplex_tree_options.h +157 -0
- multipers/gudhi/gudhi/Simplex_tree.h +2794 -0
- multipers/gudhi/gudhi/Simplex_tree_multi.h +152 -0
- multipers/gudhi/gudhi/distance_functions.h +62 -0
- multipers/gudhi/gudhi/graph_simplicial_complex.h +104 -0
- multipers/gudhi/gudhi/persistence_interval.h +253 -0
- multipers/gudhi/gudhi/persistence_matrix_options.h +170 -0
- multipers/gudhi/gudhi/reader_utils.h +367 -0
- multipers/gudhi/mma_interface_coh.h +256 -0
- multipers/gudhi/mma_interface_h0.h +223 -0
- multipers/gudhi/mma_interface_matrix.h +293 -0
- multipers/gudhi/naive_merge_tree.h +536 -0
- multipers/gudhi/scc_io.h +310 -0
- multipers/gudhi/truc.h +1403 -0
- multipers/io.cpython-312-darwin.so +0 -0
- multipers/io.pyx +644 -0
- multipers/ml/__init__.py +0 -0
- multipers/ml/accuracies.py +90 -0
- multipers/ml/invariants_with_persistable.py +79 -0
- multipers/ml/kernels.py +176 -0
- multipers/ml/mma.py +713 -0
- multipers/ml/one.py +472 -0
- multipers/ml/point_clouds.py +352 -0
- multipers/ml/signed_measures.py +1589 -0
- multipers/ml/sliced_wasserstein.py +461 -0
- multipers/ml/tools.py +113 -0
- multipers/mma_structures.cpython-312-darwin.so +0 -0
- multipers/mma_structures.pxd +128 -0
- multipers/mma_structures.pyx +2786 -0
- multipers/mma_structures.pyx.tp +1094 -0
- multipers/multi_parameter_rank_invariant/diff_helpers.h +84 -0
- multipers/multi_parameter_rank_invariant/euler_characteristic.h +97 -0
- multipers/multi_parameter_rank_invariant/function_rips.h +322 -0
- multipers/multi_parameter_rank_invariant/hilbert_function.h +769 -0
- multipers/multi_parameter_rank_invariant/persistence_slices.h +148 -0
- multipers/multi_parameter_rank_invariant/rank_invariant.h +369 -0
- multipers/multiparameter_edge_collapse.py +41 -0
- multipers/multiparameter_module_approximation/approximation.h +2330 -0
- multipers/multiparameter_module_approximation/combinatory.h +129 -0
- multipers/multiparameter_module_approximation/debug.h +107 -0
- multipers/multiparameter_module_approximation/euler_curves.h +0 -0
- multipers/multiparameter_module_approximation/format_python-cpp.h +286 -0
- multipers/multiparameter_module_approximation/heap_column.h +238 -0
- multipers/multiparameter_module_approximation/images.h +79 -0
- multipers/multiparameter_module_approximation/list_column.h +174 -0
- multipers/multiparameter_module_approximation/list_column_2.h +232 -0
- multipers/multiparameter_module_approximation/ru_matrix.h +347 -0
- multipers/multiparameter_module_approximation/set_column.h +135 -0
- multipers/multiparameter_module_approximation/structure_higher_dim_barcode.h +36 -0
- multipers/multiparameter_module_approximation/unordered_set_column.h +166 -0
- multipers/multiparameter_module_approximation/utilities.h +403 -0
- multipers/multiparameter_module_approximation/vector_column.h +223 -0
- multipers/multiparameter_module_approximation/vector_matrix.h +331 -0
- multipers/multiparameter_module_approximation/vineyards.h +464 -0
- multipers/multiparameter_module_approximation/vineyards_trajectories.h +649 -0
- multipers/multiparameter_module_approximation.cpython-312-darwin.so +0 -0
- multipers/multiparameter_module_approximation.pyx +235 -0
- multipers/pickle.py +90 -0
- multipers/plots.py +456 -0
- multipers/point_measure.cpython-312-darwin.so +0 -0
- multipers/point_measure.pyx +395 -0
- multipers/simplex_tree_multi.cpython-312-darwin.so +0 -0
- multipers/simplex_tree_multi.pxd +134 -0
- multipers/simplex_tree_multi.pyx +10840 -0
- multipers/simplex_tree_multi.pyx.tp +2009 -0
- multipers/slicer.cpython-312-darwin.so +0 -0
- multipers/slicer.pxd +3034 -0
- multipers/slicer.pxd.tp +234 -0
- multipers/slicer.pyx +20481 -0
- multipers/slicer.pyx.tp +1088 -0
- multipers/tensor/tensor.h +672 -0
- multipers/tensor.pxd +13 -0
- multipers/test.pyx +44 -0
- multipers/tests/__init__.py +62 -0
- multipers/torch/__init__.py +1 -0
- multipers/torch/diff_grids.py +240 -0
- multipers/torch/rips_density.py +310 -0
- multipers-2.3.3b6.dist-info/METADATA +128 -0
- multipers-2.3.3b6.dist-info/RECORD +183 -0
- multipers-2.3.3b6.dist-info/WHEEL +6 -0
- multipers-2.3.3b6.dist-info/licenses/LICENSE +21 -0
- multipers-2.3.3b6.dist-info/top_level.txt +1 -0
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from libcpp.utility cimport pair
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from libcpp cimport bool
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from libcpp.vector cimport vector
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from libc.stdint cimport uintptr_t,intptr_t
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from multipers.filtrations cimport *
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ctypedef vector[unsigned int] boundary_type
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ctypedef vector[boundary_type] boundary_matrix
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ctypedef vector[int] simplex_type
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cdef extern from "multiparameter_module_approximation/approximation.h" namespace "Gudhi::multiparameter::mma":
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cdef cppclass Summand[T=*]:
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ctypedef vector[T] corner_type
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ctypedef T value_type
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ctypedef pair[vector[T],vector[T]] interval
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Summand() except +
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Summand(vector[One_critical_filtration[T]]&, vector[One_critical_filtration[T]]&, int) except + nogil
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T get_interleaving() nogil
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T get_local_weight(const vector[T]&, const T) nogil
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void add_bar(T, T, const vector[T]&, vector[T]&, vector[T]&, const bool, const interval&) nogil
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vector[One_critical_filtration[T]] get_birth_list() nogil
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vector[One_critical_filtration[T]] get_death_list() nogil
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void complete_birth(const T) nogil
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void complete_death(const T) nogil
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int get_dimension() nogil const
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void set_dimension(int) nogil
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bool contains(const vector[T]&) nogil const
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void rescale(const vector[T]&) nogil
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bool operator==(const Summand[T]&) nogil
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cdef extern from "multiparameter_module_approximation/utilities.h" namespace "Gudhi::multiparameter::mma":
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cdef cppclass MultiDiagram_point[T=*]:
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ctypedef T value_type
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ctypedef One_critical_filtration[double] filtration_type
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MultiDiagram_point() except + nogil
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MultiDiagram_point(int , T , T ) except + nogil
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cdef extern from "multiparameter_module_approximation/utilities.h" namespace "Gudhi::multiparameter::mma":
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cdef cppclass MultiDiagram[T=*, value_type=*]:
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ctypedef pair[vector[T], vector[T]] bar
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ctypedef vector[bar] barcode
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ctypedef vector[float] multipers_bar
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ctypedef vector[multipers_bar] multipers_barcode
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vector[pair[vector[value_type],vector[value_type]]] get_points(const int) const
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vector[MultiDiagram_point[T]].const_iterator begin()
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vector[MultiDiagram_point[T]].const_iterator end()
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unsigned int size() const
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cdef extern from "multiparameter_module_approximation/utilities.h" namespace "Gudhi::multiparameter::mma":
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cdef cppclass MultiDiagrams[T=*, value_type=*]:
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MultiDiagrams() except + nogil
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ctypedef pair[vector[pair[double, double]], vector[unsigned int]] plot_interface_type
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ctypedef vector[T] corner_type
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ctypedef pair[corner_type, corner_type] bar
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ctypedef vector[bar] barcode
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ctypedef vector[T] multipers_bar
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ctypedef vector[multipers_bar] multipers_barcode
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ctypedef vector[barcode] barcodes
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vector[vector[vector[double]]] to_multipers() nogil const
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vector[vector[pair[vector[value_type], vector[value_type]]]] get_points() nogil
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cdef extern from "multiparameter_module_approximation/approximation.h" namespace "Gudhi::multiparameter::mma":
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cdef cppclass Module[T=*]:
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void clean(const bool) nogil
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void fill(const T) nogil
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vector[pair[vector[vector[T]], vector[vector[T]]]] get_corners_of_dimension(unsigned int) nogil
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image_type get_vectorization_in_dimension(const int, const T, const T, const bool, Box[T]&, unsigned int, unsigned int) nogil
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vector[image_type] get_vectorization(const T, const T, const bool, Box[T], unsigned int, unsigned int) nogil
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MultiDiagram[One_critical_filtration[T], T] get_barcode(Line[T]&, const int, const bool) nogil
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vector[vector[pair[T,T]]] get_barcode2(Line[T]&, const int) nogil
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MultiDiagrams[One_critical_filtration[T],T] get_barcodes(const vector[One_critical_filtration[T]]& , const int, const bool ) nogil
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vector[vector[vector[pair[T,T]]]] get_barcodes2(const vector[Line[T]]& , const int, ) nogil
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image_type get_landscape(const int,const unsigned int,Box[T],const vector[unsigned int]&) nogil
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vector[image_type] get_landscapes(const int,const vector[unsigned int],Box[T],const vector[unsigned int]&) nogil
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vector[int] euler_curve(const vector[One_critical_filtration[T]]&) nogil
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void rescale(vector[T]&, int) nogil
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void translate(vector[T]&, int) nogil
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vector[vector[T]] compute_pixels(vector[vector[T]], vector[int], Box[T], T, T, bool,int) nogil
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+
vector[vector[pair[vector[vector[int]],vector[vector[int]]]]] to_idx(vector[vector[T]]) nogil
|
|
115
|
+
vector[vector[vector[int]]] to_flat_idx(vector[vector[T]]) nogil
|
|
116
|
+
vector[vector[vector[int]]] compute_distances_idx_to(vector[vector[T]],bool, int) nogil
|
|
117
|
+
vector[vector[T]] compute_distances_to(vector[vector[T]],bool, int) nogil
|
|
118
|
+
vector[T] get_interleavings(Box[T]) nogil
|
|
119
|
+
vector[int] get_degree_splits() nogil
|
|
120
|
+
void compute_distances_to(T*,vector[vector[T]],bool, int) nogil
|
|
121
|
+
|
|
122
|
+
|
|
123
|
+
|
|
124
|
+
|
|
125
|
+
|
|
126
|
+
|
|
127
|
+
cdef inline list[tuple[list[double],list[double]]] _bc2py(vector[pair[vector[double],vector[double]]] bc):
|
|
128
|
+
return bc
|