multipers 2.3.3b6__cp312-cp312-macosx_10_13_x86_64.whl
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- multipers/.dylibs/libc++.1.0.dylib +0 -0
- multipers/.dylibs/libtbb.12.16.dylib +0 -0
- multipers/__init__.py +33 -0
- multipers/_signed_measure_meta.py +453 -0
- multipers/_slicer_meta.py +211 -0
- multipers/array_api/__init__.py +45 -0
- multipers/array_api/numpy.py +41 -0
- multipers/array_api/torch.py +58 -0
- multipers/data/MOL2.py +458 -0
- multipers/data/UCR.py +18 -0
- multipers/data/__init__.py +1 -0
- multipers/data/graphs.py +466 -0
- multipers/data/immuno_regions.py +27 -0
- multipers/data/minimal_presentation_to_st_bf.py +0 -0
- multipers/data/pytorch2simplextree.py +91 -0
- multipers/data/shape3d.py +101 -0
- multipers/data/synthetic.py +113 -0
- multipers/distances.py +202 -0
- multipers/filtration_conversions.pxd +229 -0
- multipers/filtration_conversions.pxd.tp +84 -0
- multipers/filtrations/__init__.py +18 -0
- multipers/filtrations/density.py +574 -0
- multipers/filtrations/filtrations.py +361 -0
- multipers/filtrations.pxd +224 -0
- multipers/function_rips.cpython-312-darwin.so +0 -0
- multipers/function_rips.pyx +105 -0
- multipers/grids.cpython-312-darwin.so +0 -0
- multipers/grids.pyx +433 -0
- multipers/gudhi/Persistence_slices_interface.h +132 -0
- multipers/gudhi/Simplex_tree_interface.h +239 -0
- multipers/gudhi/Simplex_tree_multi_interface.h +551 -0
- multipers/gudhi/cubical_to_boundary.h +59 -0
- multipers/gudhi/gudhi/Bitmap_cubical_complex.h +450 -0
- multipers/gudhi/gudhi/Bitmap_cubical_complex_base.h +1070 -0
- multipers/gudhi/gudhi/Bitmap_cubical_complex_periodic_boundary_conditions_base.h +579 -0
- multipers/gudhi/gudhi/Debug_utils.h +45 -0
- multipers/gudhi/gudhi/Fields/Multi_field.h +484 -0
- multipers/gudhi/gudhi/Fields/Multi_field_operators.h +455 -0
- multipers/gudhi/gudhi/Fields/Multi_field_shared.h +450 -0
- multipers/gudhi/gudhi/Fields/Multi_field_small.h +531 -0
- multipers/gudhi/gudhi/Fields/Multi_field_small_operators.h +507 -0
- multipers/gudhi/gudhi/Fields/Multi_field_small_shared.h +531 -0
- multipers/gudhi/gudhi/Fields/Z2_field.h +355 -0
- multipers/gudhi/gudhi/Fields/Z2_field_operators.h +376 -0
- multipers/gudhi/gudhi/Fields/Zp_field.h +420 -0
- multipers/gudhi/gudhi/Fields/Zp_field_operators.h +400 -0
- multipers/gudhi/gudhi/Fields/Zp_field_shared.h +418 -0
- multipers/gudhi/gudhi/Flag_complex_edge_collapser.h +337 -0
- multipers/gudhi/gudhi/Matrix.h +2107 -0
- multipers/gudhi/gudhi/Multi_critical_filtration.h +1038 -0
- multipers/gudhi/gudhi/Multi_persistence/Box.h +174 -0
- multipers/gudhi/gudhi/Multi_persistence/Line.h +282 -0
- multipers/gudhi/gudhi/Off_reader.h +173 -0
- multipers/gudhi/gudhi/One_critical_filtration.h +1441 -0
- multipers/gudhi/gudhi/Persistence_matrix/Base_matrix.h +769 -0
- multipers/gudhi/gudhi/Persistence_matrix/Base_matrix_with_column_compression.h +686 -0
- multipers/gudhi/gudhi/Persistence_matrix/Boundary_matrix.h +842 -0
- multipers/gudhi/gudhi/Persistence_matrix/Chain_matrix.h +1350 -0
- multipers/gudhi/gudhi/Persistence_matrix/Id_to_index_overlay.h +1105 -0
- multipers/gudhi/gudhi/Persistence_matrix/Position_to_index_overlay.h +859 -0
- multipers/gudhi/gudhi/Persistence_matrix/RU_matrix.h +910 -0
- multipers/gudhi/gudhi/Persistence_matrix/allocators/entry_constructors.h +139 -0
- multipers/gudhi/gudhi/Persistence_matrix/base_pairing.h +230 -0
- multipers/gudhi/gudhi/Persistence_matrix/base_swap.h +211 -0
- multipers/gudhi/gudhi/Persistence_matrix/boundary_cell_position_to_id_mapper.h +60 -0
- multipers/gudhi/gudhi/Persistence_matrix/boundary_face_position_to_id_mapper.h +60 -0
- multipers/gudhi/gudhi/Persistence_matrix/chain_pairing.h +136 -0
- multipers/gudhi/gudhi/Persistence_matrix/chain_rep_cycles.h +190 -0
- multipers/gudhi/gudhi/Persistence_matrix/chain_vine_swap.h +616 -0
- multipers/gudhi/gudhi/Persistence_matrix/columns/chain_column_extra_properties.h +150 -0
- multipers/gudhi/gudhi/Persistence_matrix/columns/column_dimension_holder.h +106 -0
- multipers/gudhi/gudhi/Persistence_matrix/columns/column_utilities.h +219 -0
- multipers/gudhi/gudhi/Persistence_matrix/columns/entry_types.h +327 -0
- multipers/gudhi/gudhi/Persistence_matrix/columns/heap_column.h +1140 -0
- multipers/gudhi/gudhi/Persistence_matrix/columns/intrusive_list_column.h +934 -0
- multipers/gudhi/gudhi/Persistence_matrix/columns/intrusive_set_column.h +934 -0
- multipers/gudhi/gudhi/Persistence_matrix/columns/list_column.h +980 -0
- multipers/gudhi/gudhi/Persistence_matrix/columns/naive_vector_column.h +1092 -0
- multipers/gudhi/gudhi/Persistence_matrix/columns/row_access.h +192 -0
- multipers/gudhi/gudhi/Persistence_matrix/columns/set_column.h +921 -0
- multipers/gudhi/gudhi/Persistence_matrix/columns/small_vector_column.h +1093 -0
- multipers/gudhi/gudhi/Persistence_matrix/columns/unordered_set_column.h +1012 -0
- multipers/gudhi/gudhi/Persistence_matrix/columns/vector_column.h +1244 -0
- multipers/gudhi/gudhi/Persistence_matrix/matrix_dimension_holders.h +186 -0
- multipers/gudhi/gudhi/Persistence_matrix/matrix_row_access.h +164 -0
- multipers/gudhi/gudhi/Persistence_matrix/ru_pairing.h +156 -0
- multipers/gudhi/gudhi/Persistence_matrix/ru_rep_cycles.h +376 -0
- multipers/gudhi/gudhi/Persistence_matrix/ru_vine_swap.h +540 -0
- multipers/gudhi/gudhi/Persistent_cohomology/Field_Zp.h +118 -0
- multipers/gudhi/gudhi/Persistent_cohomology/Multi_field.h +173 -0
- multipers/gudhi/gudhi/Persistent_cohomology/Persistent_cohomology_column.h +128 -0
- multipers/gudhi/gudhi/Persistent_cohomology.h +745 -0
- multipers/gudhi/gudhi/Points_off_io.h +171 -0
- multipers/gudhi/gudhi/Simple_object_pool.h +69 -0
- multipers/gudhi/gudhi/Simplex_tree/Simplex_tree_iterators.h +463 -0
- multipers/gudhi/gudhi/Simplex_tree/Simplex_tree_node_explicit_storage.h +83 -0
- multipers/gudhi/gudhi/Simplex_tree/Simplex_tree_siblings.h +106 -0
- multipers/gudhi/gudhi/Simplex_tree/Simplex_tree_star_simplex_iterators.h +277 -0
- multipers/gudhi/gudhi/Simplex_tree/hooks_simplex_base.h +62 -0
- multipers/gudhi/gudhi/Simplex_tree/indexing_tag.h +27 -0
- multipers/gudhi/gudhi/Simplex_tree/serialization_utils.h +62 -0
- multipers/gudhi/gudhi/Simplex_tree/simplex_tree_options.h +157 -0
- multipers/gudhi/gudhi/Simplex_tree.h +2794 -0
- multipers/gudhi/gudhi/Simplex_tree_multi.h +152 -0
- multipers/gudhi/gudhi/distance_functions.h +62 -0
- multipers/gudhi/gudhi/graph_simplicial_complex.h +104 -0
- multipers/gudhi/gudhi/persistence_interval.h +253 -0
- multipers/gudhi/gudhi/persistence_matrix_options.h +170 -0
- multipers/gudhi/gudhi/reader_utils.h +367 -0
- multipers/gudhi/mma_interface_coh.h +256 -0
- multipers/gudhi/mma_interface_h0.h +223 -0
- multipers/gudhi/mma_interface_matrix.h +293 -0
- multipers/gudhi/naive_merge_tree.h +536 -0
- multipers/gudhi/scc_io.h +310 -0
- multipers/gudhi/truc.h +1403 -0
- multipers/io.cpython-312-darwin.so +0 -0
- multipers/io.pyx +644 -0
- multipers/ml/__init__.py +0 -0
- multipers/ml/accuracies.py +90 -0
- multipers/ml/invariants_with_persistable.py +79 -0
- multipers/ml/kernels.py +176 -0
- multipers/ml/mma.py +713 -0
- multipers/ml/one.py +472 -0
- multipers/ml/point_clouds.py +352 -0
- multipers/ml/signed_measures.py +1589 -0
- multipers/ml/sliced_wasserstein.py +461 -0
- multipers/ml/tools.py +113 -0
- multipers/mma_structures.cpython-312-darwin.so +0 -0
- multipers/mma_structures.pxd +128 -0
- multipers/mma_structures.pyx +2786 -0
- multipers/mma_structures.pyx.tp +1094 -0
- multipers/multi_parameter_rank_invariant/diff_helpers.h +84 -0
- multipers/multi_parameter_rank_invariant/euler_characteristic.h +97 -0
- multipers/multi_parameter_rank_invariant/function_rips.h +322 -0
- multipers/multi_parameter_rank_invariant/hilbert_function.h +769 -0
- multipers/multi_parameter_rank_invariant/persistence_slices.h +148 -0
- multipers/multi_parameter_rank_invariant/rank_invariant.h +369 -0
- multipers/multiparameter_edge_collapse.py +41 -0
- multipers/multiparameter_module_approximation/approximation.h +2330 -0
- multipers/multiparameter_module_approximation/combinatory.h +129 -0
- multipers/multiparameter_module_approximation/debug.h +107 -0
- multipers/multiparameter_module_approximation/euler_curves.h +0 -0
- multipers/multiparameter_module_approximation/format_python-cpp.h +286 -0
- multipers/multiparameter_module_approximation/heap_column.h +238 -0
- multipers/multiparameter_module_approximation/images.h +79 -0
- multipers/multiparameter_module_approximation/list_column.h +174 -0
- multipers/multiparameter_module_approximation/list_column_2.h +232 -0
- multipers/multiparameter_module_approximation/ru_matrix.h +347 -0
- multipers/multiparameter_module_approximation/set_column.h +135 -0
- multipers/multiparameter_module_approximation/structure_higher_dim_barcode.h +36 -0
- multipers/multiparameter_module_approximation/unordered_set_column.h +166 -0
- multipers/multiparameter_module_approximation/utilities.h +403 -0
- multipers/multiparameter_module_approximation/vector_column.h +223 -0
- multipers/multiparameter_module_approximation/vector_matrix.h +331 -0
- multipers/multiparameter_module_approximation/vineyards.h +464 -0
- multipers/multiparameter_module_approximation/vineyards_trajectories.h +649 -0
- multipers/multiparameter_module_approximation.cpython-312-darwin.so +0 -0
- multipers/multiparameter_module_approximation.pyx +235 -0
- multipers/pickle.py +90 -0
- multipers/plots.py +456 -0
- multipers/point_measure.cpython-312-darwin.so +0 -0
- multipers/point_measure.pyx +395 -0
- multipers/simplex_tree_multi.cpython-312-darwin.so +0 -0
- multipers/simplex_tree_multi.pxd +134 -0
- multipers/simplex_tree_multi.pyx +10840 -0
- multipers/simplex_tree_multi.pyx.tp +2009 -0
- multipers/slicer.cpython-312-darwin.so +0 -0
- multipers/slicer.pxd +3034 -0
- multipers/slicer.pxd.tp +234 -0
- multipers/slicer.pyx +20481 -0
- multipers/slicer.pyx.tp +1088 -0
- multipers/tensor/tensor.h +672 -0
- multipers/tensor.pxd +13 -0
- multipers/test.pyx +44 -0
- multipers/tests/__init__.py +62 -0
- multipers/torch/__init__.py +1 -0
- multipers/torch/diff_grids.py +240 -0
- multipers/torch/rips_density.py +310 -0
- multipers-2.3.3b6.dist-info/METADATA +128 -0
- multipers-2.3.3b6.dist-info/RECORD +183 -0
- multipers-2.3.3b6.dist-info/WHEEL +6 -0
- multipers-2.3.3b6.dist-info/licenses/LICENSE +21 -0
- multipers-2.3.3b6.dist-info/top_level.txt +1 -0
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/* This file is part of the Gudhi Library - https://gudhi.inria.fr/ - which is released under MIT.
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* See file LICENSE or go to https://gudhi.inria.fr/licensing/ for full license details.
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* Author(s): Hannah Schreiber
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*
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* Copyright (C) 2022-24 Inria
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*
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* Modification(s):
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* - YYYY/MM Author: Description of the modification
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*/
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/**
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* @file unordered_set_column.h
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* @author Hannah Schreiber
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* @brief Contains the @ref Gudhi::persistence_matrix::Unordered_set_column class.
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* Also defines the std::hash method for @ref Gudhi::persistence_matrix::Unordered_set_column.
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*/
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#ifndef PM_UNORDERED_SET_COLUMN_H
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#define PM_UNORDERED_SET_COLUMN_H
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#include <vector>
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#include <stdexcept>
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#include <type_traits>
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#include <set>
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#include <utility> //std::swap, std::move & std::exchange
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#include <boost/iterator/indirect_iterator.hpp>
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#if BOOST_VERSION >= 108100
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#include <boost/unordered/unordered_flat_set.hpp>
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#else
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#include <unordered_set>
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#endif
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#include <gudhi/Persistence_matrix/allocators/entry_constructors.h>
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namespace Gudhi {
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namespace persistence_matrix {
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// For unordered_set container. Outside of Unordered_set_column because of a msvc bug who can't compile properly
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// unordered_flat_set if the hash method is nested.
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template <class Entry>
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struct EntryPointerHash
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{
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size_t operator()(const Entry* c) const { return std::hash<Entry>()(*c); }
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};
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template <class Entry>
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struct EntryPointerEq
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{
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bool operator()(const Entry* c1, const Entry* c2) const { return *c1 == *c2; }
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};
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/**
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* @class Unordered_set_column unordered_set_column.h gudhi/Persistence_matrix/columns/unordered_set_column.h
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* @ingroup persistence_matrix
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*
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* @brief Column class following the @ref PersistenceMatrixColumn concept.
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*
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* Column based on an unordered set structure. The entries are not ordered, but only non-zero values
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* are stored uniquely in the underlying container. When adding an entry range into it, the given entry range
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* also does not need to be ordered (contrary to most other column types).
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*
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* @tparam Master_matrix An instantiation of @ref Matrix from which all types and options are deduced.
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* @tparam Entry_constructor Factory of @ref Entry classes.
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*/
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template <class Master_matrix>
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class Unordered_set_column : public Master_matrix::Row_access_option,
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public Master_matrix::Column_dimension_option,
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public Master_matrix::Chain_column_option
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{
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public:
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using Master = Master_matrix;
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using Index = typename Master_matrix::Index;
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using ID_index = typename Master_matrix::ID_index;
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using Dimension = typename Master_matrix::Dimension;
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using Field_element = typename Master_matrix::Element;
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using Entry = typename Master_matrix::Matrix_entry;
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using Column_settings = typename Master_matrix::Column_settings;
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private:
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using Field_operators = typename Master_matrix::Field_operators;
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using Entry_constructor = typename Master_matrix::Entry_constructor;
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struct EntryPointerComp {
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bool operator()(const Entry* c1, const Entry* c2) const { return *c1 < *c2; }
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};
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#if BOOST_VERSION >= 108100
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using Column_support = boost::unordered_flat_set<Entry*, EntryPointerHash<Entry>, EntryPointerEq<Entry>>;
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#else
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using Column_support = std::unordered_set<Entry*, EntryPointerHash<Entry>, EntryPointerEq<Entry>>;
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#endif
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public:
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using iterator = boost::indirect_iterator<typename Column_support::iterator>;
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using const_iterator = boost::indirect_iterator<typename Column_support::const_iterator>;
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Unordered_set_column(Column_settings* colSettings = nullptr);
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template <class Container = typename Master_matrix::Boundary>
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Unordered_set_column(const Container& nonZeroRowIndices, Column_settings* colSettings);
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template <class Container = typename Master_matrix::Boundary, class Row_container>
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Unordered_set_column(Index columnIndex,
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const Container& nonZeroRowIndices,
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Row_container* rowContainer,
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Column_settings* colSettings);
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template <class Container = typename Master_matrix::Boundary>
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Unordered_set_column(const Container& nonZeroChainRowIndices, Dimension dimension, Column_settings* colSettings);
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template <class Container = typename Master_matrix::Boundary, class Row_container>
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Unordered_set_column(Index columnIndex,
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const Container& nonZeroChainRowIndices,
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Dimension dimension,
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Row_container* rowContainer,
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Column_settings* colSettings);
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Unordered_set_column(const Unordered_set_column& column, Column_settings* colSettings = nullptr);
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template <class Row_container>
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Unordered_set_column(const Unordered_set_column& column,
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Index columnIndex,
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Row_container* rowContainer,
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Column_settings* colSettings = nullptr);
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Unordered_set_column(Unordered_set_column&& column) noexcept;
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~Unordered_set_column();
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std::vector<Field_element> get_content(int columnLength = -1) const;
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bool is_non_zero(ID_index rowIndex) const;
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bool is_empty() const;
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std::size_t size() const;
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template <class Row_index_map>
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void reorder(const Row_index_map& valueMap, [[maybe_unused]] Index columnIndex = -1);
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void clear();
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void clear(ID_index rowIndex);
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ID_index get_pivot() const;
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Field_element get_pivot_value() const;
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iterator begin() noexcept;
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136
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+
const_iterator begin() const noexcept;
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137
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+
iterator end() noexcept;
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138
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+
const_iterator end() const noexcept;
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139
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+
|
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140
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+
template <class Entry_range>
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141
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+
Unordered_set_column& operator+=(const Entry_range& column);
|
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142
|
+
Unordered_set_column& operator+=(Unordered_set_column& column);
|
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143
|
+
|
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144
|
+
Unordered_set_column& operator*=(unsigned int v);
|
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145
|
+
|
|
146
|
+
// this = v * this + column
|
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147
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+
template <class Entry_range>
|
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148
|
+
Unordered_set_column& multiply_target_and_add(const Field_element& val, const Entry_range& column);
|
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149
|
+
Unordered_set_column& multiply_target_and_add(const Field_element& val, Unordered_set_column& column);
|
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150
|
+
// this = this + column * v
|
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151
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+
template <class Entry_range>
|
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152
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+
Unordered_set_column& multiply_source_and_add(const Entry_range& column, const Field_element& val);
|
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153
|
+
Unordered_set_column& multiply_source_and_add(Unordered_set_column& column, const Field_element& val);
|
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154
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+
|
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155
|
+
void push_back(const Entry& entry);
|
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+
|
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157
|
+
friend bool operator==(const Unordered_set_column& c1, const Unordered_set_column& c2) {
|
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158
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+
if (&c1 == &c2) return true;
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159
|
+
if (c1.column_.size() != c2.column_.size()) return false;
|
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160
|
+
|
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161
|
+
for (Entry* entry : c1.column_) {
|
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162
|
+
auto it = c2.column_.find(entry);
|
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163
|
+
if (it == c2.column_.end()) return false;
|
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164
|
+
if constexpr (!Master_matrix::Option_list::is_z2)
|
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165
|
+
if ((*it)->get_element() != entry->get_element()) return false;
|
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166
|
+
}
|
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167
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+
return true;
|
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168
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+
}
|
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169
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+
friend bool operator<(const Unordered_set_column& c1, const Unordered_set_column& c2) {
|
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170
|
+
if (&c1 == &c2) return false;
|
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171
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+
|
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172
|
+
using ID_index = Unordered_set_column<Master_matrix>::ID_index;
|
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173
|
+
using Entry_rep =
|
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174
|
+
typename std::conditional<Master_matrix::Option_list::is_z2,
|
|
175
|
+
ID_index,
|
|
176
|
+
std::pair<ID_index, unsigned int>
|
|
177
|
+
>::type;
|
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178
|
+
|
|
179
|
+
auto it1 = c1.column_.begin();
|
|
180
|
+
auto it2 = c2.column_.begin();
|
|
181
|
+
std::set<Entry_rep> entries1, entries2;
|
|
182
|
+
while (it1 != c1.column_.end() && it2 != c2.column_.end()) {
|
|
183
|
+
if constexpr (Master_matrix::Option_list::is_z2) {
|
|
184
|
+
entries1.insert((*it1)->get_row_index());
|
|
185
|
+
entries2.insert((*it2)->get_row_index());
|
|
186
|
+
} else {
|
|
187
|
+
entries1.emplace((*it1)->get_row_index(), (*it1)->get_element());
|
|
188
|
+
entries2.emplace((*it2)->get_row_index(), (*it2)->get_element());
|
|
189
|
+
}
|
|
190
|
+
++it1;
|
|
191
|
+
++it2;
|
|
192
|
+
}
|
|
193
|
+
while (it1 != c1.column_.end()) {
|
|
194
|
+
if constexpr (Master_matrix::Option_list::is_z2) {
|
|
195
|
+
entries1.insert((*it1)->get_row_index());
|
|
196
|
+
} else {
|
|
197
|
+
entries1.emplace((*it1)->get_row_index(), (*it1)->get_element());
|
|
198
|
+
}
|
|
199
|
+
++it1;
|
|
200
|
+
}
|
|
201
|
+
while (it2 != c2.column_.end()) {
|
|
202
|
+
if constexpr (Master_matrix::Option_list::is_z2) {
|
|
203
|
+
entries2.insert((*it2)->get_row_index());
|
|
204
|
+
} else {
|
|
205
|
+
entries2.emplace((*it2)->get_row_index(), (*it2)->get_element());
|
|
206
|
+
}
|
|
207
|
+
++it2;
|
|
208
|
+
}
|
|
209
|
+
return entries1 < entries2;
|
|
210
|
+
}
|
|
211
|
+
|
|
212
|
+
// Disabled with row access.
|
|
213
|
+
Unordered_set_column& operator=(const Unordered_set_column& other);
|
|
214
|
+
|
|
215
|
+
friend void swap(Unordered_set_column& col1, Unordered_set_column& col2) {
|
|
216
|
+
swap(static_cast<typename Master_matrix::Row_access_option&>(col1),
|
|
217
|
+
static_cast<typename Master_matrix::Row_access_option&>(col2));
|
|
218
|
+
swap(static_cast<typename Master_matrix::Column_dimension_option&>(col1),
|
|
219
|
+
static_cast<typename Master_matrix::Column_dimension_option&>(col2));
|
|
220
|
+
swap(static_cast<typename Master_matrix::Chain_column_option&>(col1),
|
|
221
|
+
static_cast<typename Master_matrix::Chain_column_option&>(col2));
|
|
222
|
+
col1.column_.swap(col2.column_);
|
|
223
|
+
std::swap(col1.operators_, col2.operators_);
|
|
224
|
+
std::swap(col1.entryPool_, col2.entryPool_);
|
|
225
|
+
}
|
|
226
|
+
|
|
227
|
+
private:
|
|
228
|
+
using RA_opt = typename Master_matrix::Row_access_option;
|
|
229
|
+
using Dim_opt = typename Master_matrix::Column_dimension_option;
|
|
230
|
+
using Chain_opt = typename Master_matrix::Chain_column_option;
|
|
231
|
+
|
|
232
|
+
Column_support column_;
|
|
233
|
+
Field_operators* operators_;
|
|
234
|
+
Entry_constructor* entryPool_;
|
|
235
|
+
|
|
236
|
+
void _delete_entry(typename Column_support::iterator& it);
|
|
237
|
+
Entry* _insert_entry(const Field_element& value, ID_index rowIndex);
|
|
238
|
+
void _insert_entry(ID_index rowIndex);
|
|
239
|
+
template <class Entry_range>
|
|
240
|
+
bool _add(const Entry_range& column);
|
|
241
|
+
template <class Entry_range>
|
|
242
|
+
bool _multiply_target_and_add(const Field_element& val, const Entry_range& column);
|
|
243
|
+
template <class Entry_range>
|
|
244
|
+
bool _multiply_source_and_add(const Entry_range& column, const Field_element& val);
|
|
245
|
+
template <class Entry_range, typename F1, typename F2>
|
|
246
|
+
bool _generic_add(const Entry_range& source, F1&& process_source, F2&& update_target);
|
|
247
|
+
};
|
|
248
|
+
|
|
249
|
+
template <class Master_matrix>
|
|
250
|
+
inline Unordered_set_column<Master_matrix>::Unordered_set_column(Column_settings* colSettings)
|
|
251
|
+
: RA_opt(),
|
|
252
|
+
Dim_opt(),
|
|
253
|
+
Chain_opt(),
|
|
254
|
+
operators_(nullptr),
|
|
255
|
+
entryPool_(colSettings == nullptr ? nullptr : &(colSettings->entryConstructor))
|
|
256
|
+
{
|
|
257
|
+
if (operators_ == nullptr && entryPool_ == nullptr) return; // to allow default constructor which gives a dummy column
|
|
258
|
+
if constexpr (!Master_matrix::Option_list::is_z2) {
|
|
259
|
+
operators_ = &(colSettings->operators);
|
|
260
|
+
}
|
|
261
|
+
}
|
|
262
|
+
|
|
263
|
+
template <class Master_matrix>
|
|
264
|
+
template <class Container>
|
|
265
|
+
inline Unordered_set_column<Master_matrix>::Unordered_set_column(const Container& nonZeroRowIndices,
|
|
266
|
+
Column_settings* colSettings)
|
|
267
|
+
: RA_opt(),
|
|
268
|
+
Dim_opt(nonZeroRowIndices.size() == 0 ? 0 : nonZeroRowIndices.size() - 1),
|
|
269
|
+
Chain_opt(),
|
|
270
|
+
column_(nonZeroRowIndices.size()),
|
|
271
|
+
operators_(nullptr),
|
|
272
|
+
entryPool_(&(colSettings->entryConstructor))
|
|
273
|
+
{
|
|
274
|
+
static_assert(!Master_matrix::isNonBasic || Master_matrix::Option_list::is_of_boundary_type,
|
|
275
|
+
"Constructor not available for chain columns, please specify the dimension of the chain.");
|
|
276
|
+
|
|
277
|
+
if constexpr (Master_matrix::Option_list::is_z2) {
|
|
278
|
+
for (ID_index id : nonZeroRowIndices) {
|
|
279
|
+
_insert_entry(id);
|
|
280
|
+
}
|
|
281
|
+
} else {
|
|
282
|
+
operators_ = &(colSettings->operators);
|
|
283
|
+
for (const auto& p : nonZeroRowIndices) {
|
|
284
|
+
_insert_entry(operators_->get_value(p.second), p.first);
|
|
285
|
+
}
|
|
286
|
+
}
|
|
287
|
+
}
|
|
288
|
+
|
|
289
|
+
template <class Master_matrix>
|
|
290
|
+
template <class Container, class Row_container>
|
|
291
|
+
inline Unordered_set_column<Master_matrix>::Unordered_set_column(Index columnIndex,
|
|
292
|
+
const Container& nonZeroRowIndices,
|
|
293
|
+
Row_container* rowContainer,
|
|
294
|
+
Column_settings* colSettings)
|
|
295
|
+
: RA_opt(columnIndex, rowContainer),
|
|
296
|
+
Dim_opt(nonZeroRowIndices.size() == 0 ? 0 : nonZeroRowIndices.size() - 1),
|
|
297
|
+
Chain_opt([&] {
|
|
298
|
+
if constexpr (Master_matrix::Option_list::is_z2) {
|
|
299
|
+
return nonZeroRowIndices.begin() == nonZeroRowIndices.end() ? -1 : *std::prev(nonZeroRowIndices.end());
|
|
300
|
+
} else {
|
|
301
|
+
return nonZeroRowIndices.begin() == nonZeroRowIndices.end() ? -1 : std::prev(nonZeroRowIndices.end())->first;
|
|
302
|
+
}
|
|
303
|
+
}()),
|
|
304
|
+
column_(nonZeroRowIndices.size()),
|
|
305
|
+
operators_(nullptr),
|
|
306
|
+
entryPool_(&(colSettings->entryConstructor))
|
|
307
|
+
{
|
|
308
|
+
static_assert(!Master_matrix::isNonBasic || Master_matrix::Option_list::is_of_boundary_type,
|
|
309
|
+
"Constructor not available for chain columns, please specify the dimension of the chain.");
|
|
310
|
+
|
|
311
|
+
if constexpr (Master_matrix::Option_list::is_z2) {
|
|
312
|
+
for (ID_index id : nonZeroRowIndices) {
|
|
313
|
+
_insert_entry(id);
|
|
314
|
+
}
|
|
315
|
+
} else {
|
|
316
|
+
operators_ = &(colSettings->operators);
|
|
317
|
+
for (const auto& p : nonZeroRowIndices) {
|
|
318
|
+
_insert_entry(operators_->get_value(p.second), p.first);
|
|
319
|
+
}
|
|
320
|
+
}
|
|
321
|
+
}
|
|
322
|
+
|
|
323
|
+
template <class Master_matrix>
|
|
324
|
+
template <class Container>
|
|
325
|
+
inline Unordered_set_column<Master_matrix>::Unordered_set_column(const Container& nonZeroRowIndices,
|
|
326
|
+
Dimension dimension,
|
|
327
|
+
Column_settings* colSettings)
|
|
328
|
+
: RA_opt(),
|
|
329
|
+
Dim_opt(dimension),
|
|
330
|
+
Chain_opt([&] {
|
|
331
|
+
if constexpr (Master_matrix::Option_list::is_z2) {
|
|
332
|
+
return nonZeroRowIndices.begin() == nonZeroRowIndices.end() ? -1 : *std::prev(nonZeroRowIndices.end());
|
|
333
|
+
} else {
|
|
334
|
+
return nonZeroRowIndices.begin() == nonZeroRowIndices.end() ? -1 : std::prev(nonZeroRowIndices.end())->first;
|
|
335
|
+
}
|
|
336
|
+
}()),
|
|
337
|
+
column_(nonZeroRowIndices.size()),
|
|
338
|
+
operators_(nullptr),
|
|
339
|
+
entryPool_(&(colSettings->entryConstructor))
|
|
340
|
+
{
|
|
341
|
+
if constexpr (Master_matrix::Option_list::is_z2) {
|
|
342
|
+
for (ID_index id : nonZeroRowIndices) {
|
|
343
|
+
_insert_entry(id);
|
|
344
|
+
}
|
|
345
|
+
} else {
|
|
346
|
+
operators_ = &(colSettings->operators);
|
|
347
|
+
for (const auto& p : nonZeroRowIndices) {
|
|
348
|
+
_insert_entry(operators_->get_value(p.second), p.first);
|
|
349
|
+
}
|
|
350
|
+
}
|
|
351
|
+
}
|
|
352
|
+
|
|
353
|
+
template <class Master_matrix>
|
|
354
|
+
template <class Container, class Row_container>
|
|
355
|
+
inline Unordered_set_column<Master_matrix>::Unordered_set_column(Index columnIndex,
|
|
356
|
+
const Container& nonZeroRowIndices,
|
|
357
|
+
Dimension dimension,
|
|
358
|
+
Row_container* rowContainer,
|
|
359
|
+
Column_settings* colSettings)
|
|
360
|
+
: RA_opt(columnIndex, rowContainer),
|
|
361
|
+
Dim_opt(dimension),
|
|
362
|
+
Chain_opt([&] {
|
|
363
|
+
if constexpr (Master_matrix::Option_list::is_z2) {
|
|
364
|
+
return nonZeroRowIndices.begin() == nonZeroRowIndices.end() ? -1 : *std::prev(nonZeroRowIndices.end());
|
|
365
|
+
} else {
|
|
366
|
+
return nonZeroRowIndices.begin() == nonZeroRowIndices.end() ? -1 : std::prev(nonZeroRowIndices.end())->first;
|
|
367
|
+
}
|
|
368
|
+
}()),
|
|
369
|
+
column_(nonZeroRowIndices.size()),
|
|
370
|
+
operators_(nullptr),
|
|
371
|
+
entryPool_(&(colSettings->entryConstructor))
|
|
372
|
+
{
|
|
373
|
+
if constexpr (Master_matrix::Option_list::is_z2) {
|
|
374
|
+
for (ID_index id : nonZeroRowIndices) {
|
|
375
|
+
_insert_entry(id);
|
|
376
|
+
}
|
|
377
|
+
} else {
|
|
378
|
+
operators_ = &(colSettings->operators);
|
|
379
|
+
for (const auto& p : nonZeroRowIndices) {
|
|
380
|
+
_insert_entry(operators_->get_value(p.second), p.first);
|
|
381
|
+
}
|
|
382
|
+
}
|
|
383
|
+
}
|
|
384
|
+
|
|
385
|
+
template <class Master_matrix>
|
|
386
|
+
inline Unordered_set_column<Master_matrix>::Unordered_set_column(const Unordered_set_column& column,
|
|
387
|
+
Column_settings* colSettings)
|
|
388
|
+
: RA_opt(),
|
|
389
|
+
Dim_opt(static_cast<const Dim_opt&>(column)),
|
|
390
|
+
Chain_opt(static_cast<const Chain_opt&>(column)),
|
|
391
|
+
column_(column.column_.bucket_count()),
|
|
392
|
+
operators_(colSettings == nullptr ? column.operators_ : nullptr),
|
|
393
|
+
entryPool_(colSettings == nullptr ? column.entryPool_ : &(colSettings->entryConstructor))
|
|
394
|
+
{
|
|
395
|
+
static_assert(!Master_matrix::Option_list::has_row_access,
|
|
396
|
+
"Simple copy constructor not available when row access option enabled. Please specify the new column "
|
|
397
|
+
"index and the row container.");
|
|
398
|
+
|
|
399
|
+
if constexpr (!Master_matrix::Option_list::is_z2) {
|
|
400
|
+
if (colSettings != nullptr) operators_ = &(colSettings->operators);
|
|
401
|
+
}
|
|
402
|
+
|
|
403
|
+
for (const Entry* entry : column.column_) {
|
|
404
|
+
if constexpr (Master_matrix::Option_list::is_z2) {
|
|
405
|
+
_insert_entry(entry->get_row_index());
|
|
406
|
+
} else {
|
|
407
|
+
_insert_entry(entry->get_element(), entry->get_row_index());
|
|
408
|
+
}
|
|
409
|
+
}
|
|
410
|
+
}
|
|
411
|
+
|
|
412
|
+
template <class Master_matrix>
|
|
413
|
+
template <class Row_container>
|
|
414
|
+
inline Unordered_set_column<Master_matrix>::Unordered_set_column(const Unordered_set_column& column,
|
|
415
|
+
Index columnIndex,
|
|
416
|
+
Row_container* rowContainer,
|
|
417
|
+
Column_settings* colSettings)
|
|
418
|
+
: RA_opt(columnIndex, rowContainer),
|
|
419
|
+
Dim_opt(static_cast<const Dim_opt&>(column)),
|
|
420
|
+
Chain_opt(static_cast<const Chain_opt&>(column)),
|
|
421
|
+
column_(column.column_.bucket_count()),
|
|
422
|
+
operators_(colSettings == nullptr ? column.operators_ : nullptr),
|
|
423
|
+
entryPool_(colSettings == nullptr ? column.entryPool_ : &(colSettings->entryConstructor))
|
|
424
|
+
{
|
|
425
|
+
if constexpr (!Master_matrix::Option_list::is_z2) {
|
|
426
|
+
if (colSettings != nullptr) operators_ = &(colSettings->operators);
|
|
427
|
+
}
|
|
428
|
+
|
|
429
|
+
for (const Entry* entry : column.column_) {
|
|
430
|
+
if constexpr (Master_matrix::Option_list::is_z2) {
|
|
431
|
+
_insert_entry(entry->get_row_index());
|
|
432
|
+
} else {
|
|
433
|
+
_insert_entry(entry->get_element(), entry->get_row_index());
|
|
434
|
+
}
|
|
435
|
+
}
|
|
436
|
+
}
|
|
437
|
+
|
|
438
|
+
template <class Master_matrix>
|
|
439
|
+
inline Unordered_set_column<Master_matrix>::Unordered_set_column(Unordered_set_column&& column) noexcept
|
|
440
|
+
: RA_opt(std::move(static_cast<RA_opt&>(column))),
|
|
441
|
+
Dim_opt(std::move(static_cast<Dim_opt&>(column))),
|
|
442
|
+
Chain_opt(std::move(static_cast<Chain_opt&>(column))),
|
|
443
|
+
column_(std::move(column.column_)),
|
|
444
|
+
operators_(std::exchange(column.operators_, nullptr)),
|
|
445
|
+
entryPool_(std::exchange(column.entryPool_, nullptr))
|
|
446
|
+
{}
|
|
447
|
+
|
|
448
|
+
template <class Master_matrix>
|
|
449
|
+
inline Unordered_set_column<Master_matrix>::~Unordered_set_column()
|
|
450
|
+
{
|
|
451
|
+
for (auto* entry : column_) {
|
|
452
|
+
if constexpr (Master_matrix::Option_list::has_row_access) RA_opt::unlink(entry);
|
|
453
|
+
entryPool_->destroy(entry);
|
|
454
|
+
}
|
|
455
|
+
}
|
|
456
|
+
|
|
457
|
+
template <class Master_matrix>
|
|
458
|
+
inline std::vector<typename Unordered_set_column<Master_matrix>::Field_element>
|
|
459
|
+
Unordered_set_column<Master_matrix>::get_content(int columnLength) const
|
|
460
|
+
{
|
|
461
|
+
if (columnLength < 0 && column_.size() > 0)
|
|
462
|
+
columnLength = (*std::max_element(column_.begin(), column_.end(), EntryPointerComp()))->get_row_index() + 1;
|
|
463
|
+
else if (columnLength < 0)
|
|
464
|
+
return std::vector<Field_element>();
|
|
465
|
+
|
|
466
|
+
std::vector<Field_element> container(columnLength, 0);
|
|
467
|
+
for (auto it = column_.begin(); it != column_.end(); ++it) {
|
|
468
|
+
if ((*it)->get_row_index() < static_cast<ID_index>(columnLength)) {
|
|
469
|
+
if constexpr (Master_matrix::Option_list::is_z2) {
|
|
470
|
+
container[(*it)->get_row_index()] = 1;
|
|
471
|
+
} else {
|
|
472
|
+
container[(*it)->get_row_index()] = (*it)->get_element();
|
|
473
|
+
}
|
|
474
|
+
}
|
|
475
|
+
}
|
|
476
|
+
return container;
|
|
477
|
+
}
|
|
478
|
+
|
|
479
|
+
template <class Master_matrix>
|
|
480
|
+
inline bool Unordered_set_column<Master_matrix>::is_non_zero(ID_index rowIndex) const
|
|
481
|
+
{
|
|
482
|
+
Entry entry(rowIndex);
|
|
483
|
+
return column_.find(&entry) != column_.end();
|
|
484
|
+
}
|
|
485
|
+
|
|
486
|
+
template <class Master_matrix>
|
|
487
|
+
inline bool Unordered_set_column<Master_matrix>::is_empty() const
|
|
488
|
+
{
|
|
489
|
+
return column_.empty();
|
|
490
|
+
}
|
|
491
|
+
|
|
492
|
+
template <class Master_matrix>
|
|
493
|
+
inline std::size_t Unordered_set_column<Master_matrix>::size() const
|
|
494
|
+
{
|
|
495
|
+
return column_.size();
|
|
496
|
+
}
|
|
497
|
+
|
|
498
|
+
template <class Master_matrix>
|
|
499
|
+
template <class Row_index_map>
|
|
500
|
+
inline void Unordered_set_column<Master_matrix>::reorder(const Row_index_map& valueMap,
|
|
501
|
+
[[maybe_unused]] Index columnIndex)
|
|
502
|
+
{
|
|
503
|
+
static_assert(!Master_matrix::isNonBasic || Master_matrix::Option_list::is_of_boundary_type,
|
|
504
|
+
"Method not available for chain columns.");
|
|
505
|
+
|
|
506
|
+
Column_support newSet;
|
|
507
|
+
|
|
508
|
+
for (Entry* entry : column_) {
|
|
509
|
+
if constexpr (Master_matrix::Option_list::has_row_access) {
|
|
510
|
+
RA_opt::unlink(entry);
|
|
511
|
+
if (columnIndex != static_cast<Index>(-1)) entry->set_column_index(columnIndex);
|
|
512
|
+
}
|
|
513
|
+
entry->set_row_index(valueMap.at(entry->get_row_index()));
|
|
514
|
+
newSet.insert(entry);
|
|
515
|
+
if constexpr (Master_matrix::Option_list::has_row_access &&
|
|
516
|
+
Master_matrix::Option_list::has_intrusive_rows) // intrusive list
|
|
517
|
+
RA_opt::insert_entry(entry->get_row_index(), entry);
|
|
518
|
+
}
|
|
519
|
+
|
|
520
|
+
// when row is a set, all entries have to be deleted first, to avoid colliding when inserting
|
|
521
|
+
if constexpr (Master_matrix::Option_list::has_row_access && !Master_matrix::Option_list::has_intrusive_rows) { // set
|
|
522
|
+
for (Entry* entry : newSet) {
|
|
523
|
+
RA_opt::insert_entry(entry->get_row_index(), entry);
|
|
524
|
+
}
|
|
525
|
+
}
|
|
526
|
+
|
|
527
|
+
column_.swap(newSet);
|
|
528
|
+
}
|
|
529
|
+
|
|
530
|
+
template <class Master_matrix>
|
|
531
|
+
inline void Unordered_set_column<Master_matrix>::clear()
|
|
532
|
+
{
|
|
533
|
+
static_assert(!Master_matrix::isNonBasic || Master_matrix::Option_list::is_of_boundary_type,
|
|
534
|
+
"Method not available for chain columns as a base element should not be empty.");
|
|
535
|
+
|
|
536
|
+
for (auto* entry : column_) {
|
|
537
|
+
if constexpr (Master_matrix::Option_list::has_row_access) RA_opt::unlink(entry);
|
|
538
|
+
entryPool_->destroy(entry);
|
|
539
|
+
}
|
|
540
|
+
|
|
541
|
+
column_.clear();
|
|
542
|
+
}
|
|
543
|
+
|
|
544
|
+
template <class Master_matrix>
|
|
545
|
+
inline void Unordered_set_column<Master_matrix>::clear(ID_index rowIndex)
|
|
546
|
+
{
|
|
547
|
+
static_assert(!Master_matrix::isNonBasic || Master_matrix::Option_list::is_of_boundary_type,
|
|
548
|
+
"Method not available for chain columns.");
|
|
549
|
+
|
|
550
|
+
auto entry = entryPool_->construct(rowIndex);
|
|
551
|
+
auto it = column_.find(entry);
|
|
552
|
+
if (it != column_.end()) {
|
|
553
|
+
_delete_entry(it);
|
|
554
|
+
}
|
|
555
|
+
entryPool_->destroy(entry);
|
|
556
|
+
}
|
|
557
|
+
|
|
558
|
+
template <class Master_matrix>
|
|
559
|
+
inline typename Unordered_set_column<Master_matrix>::ID_index Unordered_set_column<Master_matrix>::get_pivot() const
|
|
560
|
+
{
|
|
561
|
+
static_assert(Master_matrix::isNonBasic,
|
|
562
|
+
"Method not available for base columns."); // could technically be, but is the notion useful then?
|
|
563
|
+
|
|
564
|
+
if constexpr (Master_matrix::Option_list::is_of_boundary_type) {
|
|
565
|
+
if (column_.empty()) return -1;
|
|
566
|
+
// linear search could be avoided with storing the pivot. But even then, some modifications of the column requires
|
|
567
|
+
// the max, so not clear how much it is worth it.
|
|
568
|
+
return (*std::max_element(column_.begin(), column_.end(), EntryPointerComp()))->get_row_index();
|
|
569
|
+
} else {
|
|
570
|
+
return Chain_opt::get_pivot();
|
|
571
|
+
}
|
|
572
|
+
}
|
|
573
|
+
|
|
574
|
+
template <class Master_matrix>
|
|
575
|
+
inline typename Unordered_set_column<Master_matrix>::Field_element
|
|
576
|
+
Unordered_set_column<Master_matrix>::get_pivot_value() const
|
|
577
|
+
{
|
|
578
|
+
static_assert(Master_matrix::isNonBasic,
|
|
579
|
+
"Method not available for base columns."); // could technically be, but is the notion useful then?
|
|
580
|
+
|
|
581
|
+
if constexpr (Master_matrix::Option_list::is_z2) {
|
|
582
|
+
return 1;
|
|
583
|
+
} else {
|
|
584
|
+
if constexpr (Master_matrix::Option_list::is_of_boundary_type) {
|
|
585
|
+
if (column_.empty()) return 0;
|
|
586
|
+
return (*std::max_element(column_.begin(), column_.end(), EntryPointerComp()))->get_element();
|
|
587
|
+
} else {
|
|
588
|
+
if (Chain_opt::get_pivot() == static_cast<ID_index>(-1)) return Field_element();
|
|
589
|
+
for (const Entry* entry : column_) {
|
|
590
|
+
if (entry->get_row_index() == Chain_opt::get_pivot()) return entry->get_element();
|
|
591
|
+
}
|
|
592
|
+
return Field_element(); // should never happen if chain column is used properly
|
|
593
|
+
}
|
|
594
|
+
}
|
|
595
|
+
}
|
|
596
|
+
|
|
597
|
+
template <class Master_matrix>
|
|
598
|
+
inline typename Unordered_set_column<Master_matrix>::iterator Unordered_set_column<Master_matrix>::begin() noexcept
|
|
599
|
+
{
|
|
600
|
+
return column_.begin();
|
|
601
|
+
}
|
|
602
|
+
|
|
603
|
+
template <class Master_matrix>
|
|
604
|
+
inline typename Unordered_set_column<Master_matrix>::const_iterator Unordered_set_column<Master_matrix>::begin()
|
|
605
|
+
const noexcept
|
|
606
|
+
{
|
|
607
|
+
return column_.begin();
|
|
608
|
+
}
|
|
609
|
+
|
|
610
|
+
template <class Master_matrix>
|
|
611
|
+
inline typename Unordered_set_column<Master_matrix>::iterator Unordered_set_column<Master_matrix>::end() noexcept
|
|
612
|
+
{
|
|
613
|
+
return column_.end();
|
|
614
|
+
}
|
|
615
|
+
|
|
616
|
+
template <class Master_matrix>
|
|
617
|
+
inline typename Unordered_set_column<Master_matrix>::const_iterator Unordered_set_column<Master_matrix>::end()
|
|
618
|
+
const noexcept
|
|
619
|
+
{
|
|
620
|
+
return column_.end();
|
|
621
|
+
}
|
|
622
|
+
|
|
623
|
+
template <class Master_matrix>
|
|
624
|
+
template <class Entry_range>
|
|
625
|
+
inline Unordered_set_column<Master_matrix>& Unordered_set_column<Master_matrix>::operator+=(const Entry_range& column)
|
|
626
|
+
{
|
|
627
|
+
static_assert((!Master_matrix::isNonBasic || std::is_same_v<Entry_range, Unordered_set_column>),
|
|
628
|
+
"For boundary columns, the range has to be a column of same type to help ensure the validity of the "
|
|
629
|
+
"base element."); // could be removed, if we give the responsibility to the user.
|
|
630
|
+
static_assert((!Master_matrix::isNonBasic || Master_matrix::Option_list::is_of_boundary_type),
|
|
631
|
+
"For chain columns, the given column cannot be constant.");
|
|
632
|
+
|
|
633
|
+
_add(column);
|
|
634
|
+
|
|
635
|
+
return *this;
|
|
636
|
+
}
|
|
637
|
+
|
|
638
|
+
template <class Master_matrix>
|
|
639
|
+
inline Unordered_set_column<Master_matrix>& Unordered_set_column<Master_matrix>::operator+=(
|
|
640
|
+
Unordered_set_column& column)
|
|
641
|
+
{
|
|
642
|
+
if constexpr (Master_matrix::isNonBasic && !Master_matrix::Option_list::is_of_boundary_type) {
|
|
643
|
+
// assumes that the addition never zeros out this column.
|
|
644
|
+
if (_add(column)) {
|
|
645
|
+
Chain_opt::swap_pivots(column);
|
|
646
|
+
Dim_opt::swap_dimension(column);
|
|
647
|
+
}
|
|
648
|
+
} else {
|
|
649
|
+
_add(column);
|
|
650
|
+
}
|
|
651
|
+
|
|
652
|
+
return *this;
|
|
653
|
+
}
|
|
654
|
+
|
|
655
|
+
template <class Master_matrix>
|
|
656
|
+
inline Unordered_set_column<Master_matrix>& Unordered_set_column<Master_matrix>::operator*=(unsigned int v)
|
|
657
|
+
{
|
|
658
|
+
if constexpr (Master_matrix::Option_list::is_z2) {
|
|
659
|
+
if (v % 2 == 0) {
|
|
660
|
+
if constexpr (Master_matrix::isNonBasic && !Master_matrix::Option_list::is_of_boundary_type) {
|
|
661
|
+
throw std::invalid_argument("A chain column should not be multiplied by 0.");
|
|
662
|
+
} else {
|
|
663
|
+
clear();
|
|
664
|
+
}
|
|
665
|
+
}
|
|
666
|
+
} else {
|
|
667
|
+
Field_element val = operators_->get_value(v);
|
|
668
|
+
|
|
669
|
+
if (val == Field_operators::get_additive_identity()) {
|
|
670
|
+
if constexpr (Master_matrix::isNonBasic && !Master_matrix::Option_list::is_of_boundary_type) {
|
|
671
|
+
throw std::invalid_argument("A chain column should not be multiplied by 0.");
|
|
672
|
+
} else {
|
|
673
|
+
clear();
|
|
674
|
+
}
|
|
675
|
+
return *this;
|
|
676
|
+
}
|
|
677
|
+
|
|
678
|
+
if (val == Field_operators::get_multiplicative_identity()) return *this;
|
|
679
|
+
|
|
680
|
+
for (Entry* entry : column_) {
|
|
681
|
+
operators_->multiply_inplace(entry->get_element(), val);
|
|
682
|
+
if constexpr (Master_matrix::Option_list::has_row_access) RA_opt::update_entry(*entry);
|
|
683
|
+
}
|
|
684
|
+
}
|
|
685
|
+
|
|
686
|
+
return *this;
|
|
687
|
+
}
|
|
688
|
+
|
|
689
|
+
template <class Master_matrix>
|
|
690
|
+
template <class Entry_range>
|
|
691
|
+
inline Unordered_set_column<Master_matrix>& Unordered_set_column<Master_matrix>::multiply_target_and_add(
|
|
692
|
+
const Field_element& val, const Entry_range& column)
|
|
693
|
+
{
|
|
694
|
+
static_assert((!Master_matrix::isNonBasic || std::is_same_v<Entry_range, Unordered_set_column>),
|
|
695
|
+
"For boundary columns, the range has to be a column of same type to help ensure the validity of the "
|
|
696
|
+
"base element."); // could be removed, if we give the responsibility to the user.
|
|
697
|
+
static_assert((!Master_matrix::isNonBasic || Master_matrix::Option_list::is_of_boundary_type),
|
|
698
|
+
"For chain columns, the given column cannot be constant.");
|
|
699
|
+
|
|
700
|
+
if constexpr (Master_matrix::Option_list::is_z2) {
|
|
701
|
+
if (val) {
|
|
702
|
+
_add(column);
|
|
703
|
+
} else {
|
|
704
|
+
clear();
|
|
705
|
+
_add(column);
|
|
706
|
+
}
|
|
707
|
+
} else {
|
|
708
|
+
_multiply_target_and_add(val, column);
|
|
709
|
+
}
|
|
710
|
+
|
|
711
|
+
return *this;
|
|
712
|
+
}
|
|
713
|
+
|
|
714
|
+
template <class Master_matrix>
|
|
715
|
+
inline Unordered_set_column<Master_matrix>& Unordered_set_column<Master_matrix>::multiply_target_and_add(
|
|
716
|
+
const Field_element& val, Unordered_set_column& column)
|
|
717
|
+
{
|
|
718
|
+
if constexpr (Master_matrix::isNonBasic && !Master_matrix::Option_list::is_of_boundary_type) {
|
|
719
|
+
// assumes that the addition never zeros out this column.
|
|
720
|
+
if constexpr (Master_matrix::Option_list::is_z2) {
|
|
721
|
+
if (val) {
|
|
722
|
+
if (_add(column)) {
|
|
723
|
+
Chain_opt::swap_pivots(column);
|
|
724
|
+
Dim_opt::swap_dimension(column);
|
|
725
|
+
}
|
|
726
|
+
} else {
|
|
727
|
+
throw std::invalid_argument("A chain column should not be multiplied by 0.");
|
|
728
|
+
}
|
|
729
|
+
} else {
|
|
730
|
+
if (_multiply_target_and_add(val, column)) {
|
|
731
|
+
Chain_opt::swap_pivots(column);
|
|
732
|
+
Dim_opt::swap_dimension(column);
|
|
733
|
+
}
|
|
734
|
+
}
|
|
735
|
+
} else {
|
|
736
|
+
if constexpr (Master_matrix::Option_list::is_z2) {
|
|
737
|
+
if (val) {
|
|
738
|
+
_add(column);
|
|
739
|
+
} else {
|
|
740
|
+
clear();
|
|
741
|
+
_add(column);
|
|
742
|
+
}
|
|
743
|
+
} else {
|
|
744
|
+
_multiply_target_and_add(val, column);
|
|
745
|
+
}
|
|
746
|
+
}
|
|
747
|
+
|
|
748
|
+
return *this;
|
|
749
|
+
}
|
|
750
|
+
|
|
751
|
+
template <class Master_matrix>
|
|
752
|
+
template <class Entry_range>
|
|
753
|
+
inline Unordered_set_column<Master_matrix>& Unordered_set_column<Master_matrix>::multiply_source_and_add(
|
|
754
|
+
const Entry_range& column, const Field_element& val)
|
|
755
|
+
{
|
|
756
|
+
static_assert((!Master_matrix::isNonBasic || std::is_same_v<Entry_range, Unordered_set_column>),
|
|
757
|
+
"For boundary columns, the range has to be a column of same type to help ensure the validity of the "
|
|
758
|
+
"base element."); // could be removed, if we give the responsibility to the user.
|
|
759
|
+
static_assert((!Master_matrix::isNonBasic || Master_matrix::Option_list::is_of_boundary_type),
|
|
760
|
+
"For chain columns, the given column cannot be constant.");
|
|
761
|
+
|
|
762
|
+
if constexpr (Master_matrix::Option_list::is_z2) {
|
|
763
|
+
if (val) {
|
|
764
|
+
_add(column);
|
|
765
|
+
}
|
|
766
|
+
} else {
|
|
767
|
+
_multiply_source_and_add(column, val);
|
|
768
|
+
}
|
|
769
|
+
|
|
770
|
+
return *this;
|
|
771
|
+
}
|
|
772
|
+
|
|
773
|
+
template <class Master_matrix>
|
|
774
|
+
inline Unordered_set_column<Master_matrix>& Unordered_set_column<Master_matrix>::multiply_source_and_add(
|
|
775
|
+
Unordered_set_column& column, const Field_element& val)
|
|
776
|
+
{
|
|
777
|
+
if constexpr (Master_matrix::isNonBasic && !Master_matrix::Option_list::is_of_boundary_type) {
|
|
778
|
+
// assumes that the addition never zeros out this column.
|
|
779
|
+
if constexpr (Master_matrix::Option_list::is_z2) {
|
|
780
|
+
if (val) {
|
|
781
|
+
if (_add(column)) {
|
|
782
|
+
Chain_opt::swap_pivots(column);
|
|
783
|
+
Dim_opt::swap_dimension(column);
|
|
784
|
+
}
|
|
785
|
+
}
|
|
786
|
+
} else {
|
|
787
|
+
if (_multiply_source_and_add(column, val)) {
|
|
788
|
+
Chain_opt::swap_pivots(column);
|
|
789
|
+
Dim_opt::swap_dimension(column);
|
|
790
|
+
}
|
|
791
|
+
}
|
|
792
|
+
} else {
|
|
793
|
+
if constexpr (Master_matrix::Option_list::is_z2) {
|
|
794
|
+
if (val) {
|
|
795
|
+
_add(column);
|
|
796
|
+
}
|
|
797
|
+
} else {
|
|
798
|
+
_multiply_source_and_add(column, val);
|
|
799
|
+
}
|
|
800
|
+
}
|
|
801
|
+
|
|
802
|
+
return *this;
|
|
803
|
+
}
|
|
804
|
+
|
|
805
|
+
template <class Master_matrix>
|
|
806
|
+
inline void Unordered_set_column<Master_matrix>::push_back(const Entry& entry)
|
|
807
|
+
{
|
|
808
|
+
static_assert(Master_matrix::Option_list::is_of_boundary_type, "`push_back` is not available for Chain matrices.");
|
|
809
|
+
|
|
810
|
+
if constexpr (Master_matrix::Option_list::is_z2) {
|
|
811
|
+
_insert_entry(entry.get_row_index());
|
|
812
|
+
} else {
|
|
813
|
+
_insert_entry(entry.get_element(), entry.get_row_index());
|
|
814
|
+
}
|
|
815
|
+
}
|
|
816
|
+
|
|
817
|
+
template <class Master_matrix>
|
|
818
|
+
inline Unordered_set_column<Master_matrix>& Unordered_set_column<Master_matrix>::operator=(
|
|
819
|
+
const Unordered_set_column& other)
|
|
820
|
+
{
|
|
821
|
+
static_assert(!Master_matrix::Option_list::has_row_access, "= assignment not enabled with row access option.");
|
|
822
|
+
|
|
823
|
+
Dim_opt::operator=(other);
|
|
824
|
+
Chain_opt::operator=(other);
|
|
825
|
+
|
|
826
|
+
for (auto* entry : column_) {
|
|
827
|
+
if constexpr (Master_matrix::Option_list::has_row_access) RA_opt::unlink(entry);
|
|
828
|
+
entryPool_->destroy(entry);
|
|
829
|
+
}
|
|
830
|
+
column_.clear();
|
|
831
|
+
|
|
832
|
+
operators_ = other.operators_;
|
|
833
|
+
entryPool_ = other.entryPool_;
|
|
834
|
+
|
|
835
|
+
for (const Entry* entry : other.column_) {
|
|
836
|
+
if constexpr (Master_matrix::Option_list::is_z2) {
|
|
837
|
+
_insert_entry(entry->get_row_index());
|
|
838
|
+
} else {
|
|
839
|
+
_insert_entry(entry->get_element(), entry->get_row_index());
|
|
840
|
+
}
|
|
841
|
+
}
|
|
842
|
+
|
|
843
|
+
return *this;
|
|
844
|
+
}
|
|
845
|
+
|
|
846
|
+
template <class Master_matrix>
|
|
847
|
+
inline void Unordered_set_column<Master_matrix>::_delete_entry(typename Column_support::iterator& it)
|
|
848
|
+
{
|
|
849
|
+
if constexpr (Master_matrix::Option_list::has_row_access) RA_opt::unlink(*it);
|
|
850
|
+
entryPool_->destroy(*it);
|
|
851
|
+
auto tmp = it++;
|
|
852
|
+
// it = column_.erase(it);
|
|
853
|
+
column_.erase(tmp);
|
|
854
|
+
}
|
|
855
|
+
|
|
856
|
+
template <class Master_matrix>
|
|
857
|
+
inline typename Unordered_set_column<Master_matrix>::Entry* Unordered_set_column<Master_matrix>::_insert_entry(
|
|
858
|
+
const Field_element& value, ID_index rowIndex)
|
|
859
|
+
{
|
|
860
|
+
if constexpr (Master_matrix::Option_list::has_row_access) {
|
|
861
|
+
Entry* newEntry = entryPool_->construct(RA_opt::columnIndex_, rowIndex);
|
|
862
|
+
newEntry->set_element(value);
|
|
863
|
+
column_.insert(newEntry);
|
|
864
|
+
RA_opt::insert_entry(rowIndex, newEntry);
|
|
865
|
+
return newEntry;
|
|
866
|
+
} else {
|
|
867
|
+
Entry* newEntry = entryPool_->construct(rowIndex);
|
|
868
|
+
newEntry->set_element(value);
|
|
869
|
+
column_.insert(newEntry);
|
|
870
|
+
return newEntry;
|
|
871
|
+
}
|
|
872
|
+
}
|
|
873
|
+
|
|
874
|
+
template <class Master_matrix>
|
|
875
|
+
inline void Unordered_set_column<Master_matrix>::_insert_entry(ID_index rowIndex)
|
|
876
|
+
{
|
|
877
|
+
if constexpr (Master_matrix::Option_list::has_row_access) {
|
|
878
|
+
Entry* newEntry = entryPool_->construct(RA_opt::columnIndex_, rowIndex);
|
|
879
|
+
column_.insert(newEntry);
|
|
880
|
+
RA_opt::insert_entry(rowIndex, newEntry);
|
|
881
|
+
} else {
|
|
882
|
+
Entry* newEntry = entryPool_->construct(rowIndex);
|
|
883
|
+
column_.insert(newEntry);
|
|
884
|
+
}
|
|
885
|
+
}
|
|
886
|
+
|
|
887
|
+
template <class Master_matrix>
|
|
888
|
+
template <class Entry_range>
|
|
889
|
+
inline bool Unordered_set_column<Master_matrix>::_add(const Entry_range& column)
|
|
890
|
+
{
|
|
891
|
+
return _generic_add(
|
|
892
|
+
column,
|
|
893
|
+
[&](const Entry& oldEntry, Entry* newEntry) {
|
|
894
|
+
if constexpr (!Master_matrix::Option_list::is_z2) newEntry->set_element(oldEntry.get_element());
|
|
895
|
+
},
|
|
896
|
+
[&](Entry* targetEntry, const Entry& sourceEntry) {
|
|
897
|
+
if constexpr (!Master_matrix::Option_list::is_z2)
|
|
898
|
+
operators_->add_inplace(targetEntry->get_element(), sourceEntry.get_element());
|
|
899
|
+
});
|
|
900
|
+
}
|
|
901
|
+
|
|
902
|
+
template <class Master_matrix>
|
|
903
|
+
template <class Entry_range>
|
|
904
|
+
inline bool Unordered_set_column<Master_matrix>::_multiply_target_and_add(const Field_element& val,
|
|
905
|
+
const Entry_range& column)
|
|
906
|
+
{
|
|
907
|
+
if (val == 0u) {
|
|
908
|
+
if constexpr (Master_matrix::isNonBasic && !Master_matrix::Option_list::is_of_boundary_type) {
|
|
909
|
+
throw std::invalid_argument("A chain column should not be multiplied by 0.");
|
|
910
|
+
// this would not only mess up the base, but also the pivots stored.
|
|
911
|
+
} else {
|
|
912
|
+
clear();
|
|
913
|
+
for (const Entry& v : column) {
|
|
914
|
+
_insert_entry(v.get_element(), v.get_row_index());
|
|
915
|
+
}
|
|
916
|
+
return true;
|
|
917
|
+
}
|
|
918
|
+
}
|
|
919
|
+
|
|
920
|
+
// because the column is unordered, I don't see a way to do both operations in one go
|
|
921
|
+
// without guarantees on the entry range...
|
|
922
|
+
operator*=(val);
|
|
923
|
+
return _add(column);
|
|
924
|
+
}
|
|
925
|
+
|
|
926
|
+
template <class Master_matrix>
|
|
927
|
+
template <class Entry_range>
|
|
928
|
+
inline bool Unordered_set_column<Master_matrix>::_multiply_source_and_add(const Entry_range& column,
|
|
929
|
+
const Field_element& val)
|
|
930
|
+
{
|
|
931
|
+
if (val == 0u) {
|
|
932
|
+
return false;
|
|
933
|
+
}
|
|
934
|
+
|
|
935
|
+
return _generic_add(
|
|
936
|
+
column,
|
|
937
|
+
[&](const Entry& oldEntry, Entry* newEntry) {
|
|
938
|
+
newEntry->set_element(oldEntry.get_element());
|
|
939
|
+
operators_->multiply_inplace(newEntry->get_element(), val);
|
|
940
|
+
},
|
|
941
|
+
[&](Entry* targetEntry, const Entry& sourceEntry) {
|
|
942
|
+
operators_->multiply_and_add_inplace_back(sourceEntry.get_element(), val, targetEntry->get_element());
|
|
943
|
+
});
|
|
944
|
+
}
|
|
945
|
+
|
|
946
|
+
template <class Master_matrix>
|
|
947
|
+
template <class Entry_range, typename F1, typename F2>
|
|
948
|
+
inline bool Unordered_set_column<Master_matrix>::_generic_add(const Entry_range& source,
|
|
949
|
+
F1&& process_source,
|
|
950
|
+
F2&& update_target)
|
|
951
|
+
{
|
|
952
|
+
bool pivotIsZeroed = false;
|
|
953
|
+
|
|
954
|
+
for (const Entry& entry : source) {
|
|
955
|
+
Entry* newEntry;
|
|
956
|
+
if constexpr (Master_matrix::Option_list::has_row_access) {
|
|
957
|
+
newEntry = entryPool_->construct(RA_opt::columnIndex_, entry.get_row_index());
|
|
958
|
+
} else {
|
|
959
|
+
newEntry = entryPool_->construct(entry.get_row_index());
|
|
960
|
+
}
|
|
961
|
+
auto res = column_.insert(newEntry);
|
|
962
|
+
if (res.second) {
|
|
963
|
+
process_source(entry, newEntry);
|
|
964
|
+
if constexpr (Master_matrix::Option_list::has_row_access) RA_opt::insert_entry(entry.get_row_index(), newEntry);
|
|
965
|
+
} else {
|
|
966
|
+
entryPool_->destroy(newEntry);
|
|
967
|
+
if constexpr (Master_matrix::Option_list::is_z2) {
|
|
968
|
+
if constexpr (Master_matrix::isNonBasic && !Master_matrix::Option_list::is_of_boundary_type) {
|
|
969
|
+
if (entry.get_row_index() == Chain_opt::get_pivot()) pivotIsZeroed = true;
|
|
970
|
+
}
|
|
971
|
+
_delete_entry(res.first);
|
|
972
|
+
} else {
|
|
973
|
+
update_target(*res.first, entry);
|
|
974
|
+
if ((*res.first)->get_element() == Field_operators::get_additive_identity()) {
|
|
975
|
+
if constexpr (Master_matrix::isNonBasic && !Master_matrix::Option_list::is_of_boundary_type) {
|
|
976
|
+
if ((*res.first)->get_row_index() == Chain_opt::get_pivot()) pivotIsZeroed = true;
|
|
977
|
+
}
|
|
978
|
+
_delete_entry(res.first);
|
|
979
|
+
} else {
|
|
980
|
+
if constexpr (Master_matrix::Option_list::has_row_access) RA_opt::update_entry(**res.first);
|
|
981
|
+
}
|
|
982
|
+
}
|
|
983
|
+
}
|
|
984
|
+
}
|
|
985
|
+
|
|
986
|
+
return pivotIsZeroed;
|
|
987
|
+
}
|
|
988
|
+
|
|
989
|
+
} // namespace persistence_matrix
|
|
990
|
+
} // namespace Gudhi
|
|
991
|
+
|
|
992
|
+
/**
|
|
993
|
+
* @ingroup persistence_matrix
|
|
994
|
+
*
|
|
995
|
+
* @brief Hash method for @ref Gudhi::persistence_matrix::Unordered_set_column.
|
|
996
|
+
*
|
|
997
|
+
* @tparam Master_matrix Template parameter of @ref Gudhi::persistence_matrix::Unordered_set_column.
|
|
998
|
+
* @tparam Entry_constructor Template parameter of @ref Gudhi::persistence_matrix::Unordered_set_column.
|
|
999
|
+
*/
|
|
1000
|
+
template <class Master_matrix>
|
|
1001
|
+
struct std::hash<Gudhi::persistence_matrix::Unordered_set_column<Master_matrix>> {
|
|
1002
|
+
std::size_t operator()(const Gudhi::persistence_matrix::Unordered_set_column<Master_matrix>& column) const {
|
|
1003
|
+
// can't use Gudhi::persistence_matrix::hash_column because unordered
|
|
1004
|
+
std::size_t seed = 0;
|
|
1005
|
+
for (const auto& entry : column) {
|
|
1006
|
+
seed ^= std::hash<unsigned int>()(entry.get_row_index() * static_cast<unsigned int>(entry.get_element()));
|
|
1007
|
+
}
|
|
1008
|
+
return seed;
|
|
1009
|
+
}
|
|
1010
|
+
};
|
|
1011
|
+
|
|
1012
|
+
#endif // PM_UNORDERED_SET_COLUMN_H
|