multipers 2.0.0__cp312-cp312-macosx_13_0_x86_64.whl

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  1. multipers/.dylibs/libc++.1.0.dylib +0 -0
  2. multipers/.dylibs/libtbb.12.12.dylib +0 -0
  3. multipers/.dylibs/libtbbmalloc.2.12.dylib +0 -0
  4. multipers/__init__.py +11 -0
  5. multipers/_signed_measure_meta.py +268 -0
  6. multipers/_slicer_meta.py +171 -0
  7. multipers/data/MOL2.py +350 -0
  8. multipers/data/UCR.py +18 -0
  9. multipers/data/__init__.py +1 -0
  10. multipers/data/graphs.py +466 -0
  11. multipers/data/immuno_regions.py +27 -0
  12. multipers/data/minimal_presentation_to_st_bf.py +0 -0
  13. multipers/data/pytorch2simplextree.py +91 -0
  14. multipers/data/shape3d.py +101 -0
  15. multipers/data/synthetic.py +68 -0
  16. multipers/distances.py +198 -0
  17. multipers/euler_characteristic.pyx +132 -0
  18. multipers/filtration_conversions.pxd +229 -0
  19. multipers/filtrations.pxd +225 -0
  20. multipers/function_rips.cpython-312-darwin.so +0 -0
  21. multipers/function_rips.pyx +105 -0
  22. multipers/grids.cpython-312-darwin.so +0 -0
  23. multipers/grids.pyx +281 -0
  24. multipers/hilbert_function.pyi +46 -0
  25. multipers/hilbert_function.pyx +153 -0
  26. multipers/io.cpython-312-darwin.so +0 -0
  27. multipers/io.pyx +571 -0
  28. multipers/ml/__init__.py +0 -0
  29. multipers/ml/accuracies.py +90 -0
  30. multipers/ml/convolutions.py +532 -0
  31. multipers/ml/invariants_with_persistable.py +79 -0
  32. multipers/ml/kernels.py +176 -0
  33. multipers/ml/mma.py +659 -0
  34. multipers/ml/one.py +472 -0
  35. multipers/ml/point_clouds.py +238 -0
  36. multipers/ml/signed_betti.py +50 -0
  37. multipers/ml/signed_measures.py +1542 -0
  38. multipers/ml/sliced_wasserstein.py +461 -0
  39. multipers/ml/tools.py +113 -0
  40. multipers/mma_structures.cpython-312-darwin.so +0 -0
  41. multipers/mma_structures.pxd +127 -0
  42. multipers/mma_structures.pyx +2433 -0
  43. multipers/multiparameter_edge_collapse.py +41 -0
  44. multipers/multiparameter_module_approximation.cpython-312-darwin.so +0 -0
  45. multipers/multiparameter_module_approximation.pyx +211 -0
  46. multipers/pickle.py +53 -0
  47. multipers/plots.py +326 -0
  48. multipers/point_measure_integration.cpython-312-darwin.so +0 -0
  49. multipers/point_measure_integration.pyx +139 -0
  50. multipers/rank_invariant.cpython-312-darwin.so +0 -0
  51. multipers/rank_invariant.pyx +229 -0
  52. multipers/simplex_tree_multi.cpython-312-darwin.so +0 -0
  53. multipers/simplex_tree_multi.pxd +129 -0
  54. multipers/simplex_tree_multi.pyi +715 -0
  55. multipers/simplex_tree_multi.pyx +4655 -0
  56. multipers/slicer.cpython-312-darwin.so +0 -0
  57. multipers/slicer.pxd +781 -0
  58. multipers/slicer.pyx +3393 -0
  59. multipers/tensor.pxd +13 -0
  60. multipers/test.pyx +44 -0
  61. multipers/tests/__init__.py +40 -0
  62. multipers/tests/old_test_rank_invariant.py +91 -0
  63. multipers/tests/test_diff_helper.py +74 -0
  64. multipers/tests/test_hilbert_function.py +82 -0
  65. multipers/tests/test_mma.py +51 -0
  66. multipers/tests/test_point_clouds.py +59 -0
  67. multipers/tests/test_python-cpp_conversion.py +82 -0
  68. multipers/tests/test_signed_betti.py +181 -0
  69. multipers/tests/test_simplextreemulti.py +98 -0
  70. multipers/tests/test_slicer.py +63 -0
  71. multipers/torch/__init__.py +1 -0
  72. multipers/torch/diff_grids.py +217 -0
  73. multipers/torch/rips_density.py +257 -0
  74. multipers-2.0.0.dist-info/LICENSE +21 -0
  75. multipers-2.0.0.dist-info/METADATA +29 -0
  76. multipers-2.0.0.dist-info/RECORD +78 -0
  77. multipers-2.0.0.dist-info/WHEEL +5 -0
  78. multipers-2.0.0.dist-info/top_level.txt +1 -0
multipers/mma_structures.pxd ADDED
@@ -0,0 +1,127 @@
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+ from libcpp.utility cimport pair
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+ from libcpp cimport bool
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+ from libcpp.vector cimport vector
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+ from libcpp cimport tuple
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+ from libc.stdint cimport uintptr_t,intptr_t
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+
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+
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+
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+ from multipers.filtrations cimport *
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+ ctypedef vector[unsigned int] boundary_type
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+ ctypedef vector[boundary_type] boundary_matrix
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+ ctypedef vector[int] simplex_type
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+
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+ cdef extern from "multiparameter_module_approximation/approximation.h" namespace "Gudhi::multiparameter::mma":
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+ cdef cppclass Summand[T=*]:
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+ ctypedef vector[T] corner_type
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+ ctypedef T value_type
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+
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+ ctypedef pair[vector[T],vector[T]] interval
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+ Summand() except +
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+ Summand(vector[Finitely_critical_multi_filtration[T]]&, vector[Finitely_critical_multi_filtration[T]]&, int) except + nogil
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+ T get_interleaving() nogil
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+ T get_local_weight(const vector[T]&, const T) nogil
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+ void add_bar(T, T, const vector[T]&, vector[T]&, vector[T]&, const bool, const interval&) nogil
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+ bool is_empty() nogil
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+ vector[Finitely_critical_multi_filtration[T]] get_birth_list() nogil
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+ vector[Finitely_critical_multi_filtration[T]] get_death_list() nogil
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+ void complete_birth(const T) nogil
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+ void complete_death(const T) nogil
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+ int get_dimension() nogil const
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+ void set_dimension(int) nogil
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+ bool contains(const vector[T]&) nogil const
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+ Box[T] get_bounds() nogil const
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+ void rescale(const vector[T]&) nogil
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+
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+
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+
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+
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+
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+ cdef extern from "multiparameter_module_approximation/utilities.h" namespace "Gudhi::multiparameter::mma":
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+ cdef cppclass MultiDiagram_point[T=*]:
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+ ctypedef T value_type
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+ ctypedef Finitely_critical_multi_filtration[double] filtration_type
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+ MultiDiagram_point() except + nogil
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+ MultiDiagram_point(int , T , T ) except + nogil
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+ const T& get_birth() nogil const
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+ const T& get_death() nogil const
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+ int get_dimension() nogil const
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+
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+ cdef extern from "multiparameter_module_approximation/utilities.h" namespace "Gudhi::multiparameter::mma":
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+ cdef cppclass MultiDiagram[T=*, value_type=*]:
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+ MultiDiagram() except + nogil
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+ ctypedef pair[vector[T], vector[T]] bar
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+ ctypedef vector[bar] barcode
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+ ctypedef vector[float] multipers_bar
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+ ctypedef vector[multipers_bar] multipers_barcode
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+
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+ vector[pair[vector[value_type],vector[value_type]]] get_points(const int) const
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+ vector[vector[double]] to_multipers(const int) nogil const
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+ vector[MultiDiagram_point[T]].const_iterator begin()
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+ vector[MultiDiagram_point[T]].const_iterator end()
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+ unsigned int size() const
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+ MultiDiagram_point[T]& at(unsigned int) nogil
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+
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+ cdef extern from "multiparameter_module_approximation/utilities.h" namespace "Gudhi::multiparameter::mma":
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+ cdef cppclass MultiDiagrams[T=*, value_type=*]:
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+ MultiDiagrams() except + nogil
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+ ctypedef pair[vector[pair[double, double]], vector[unsigned int]] plot_interface_type
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+ ctypedef vector[T] corner_type
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+ ctypedef pair[corner_type, corner_type] bar
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+ ctypedef vector[bar] barcode
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+ ctypedef vector[T] multipers_bar
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+ ctypedef vector[multipers_bar] multipers_barcode
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+ ctypedef vector[barcode] barcodes
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+ vector[vector[vector[double]]] to_multipers() nogil const
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+ MultiDiagram[T, value_type]& at(const unsigned int) nogil
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+ unsigned int size() nogil const
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+ vector[MultiDiagram[T, value_type]].const_iterator begin()
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+ vector[MultiDiagram[T, value_type]].const_iterator end()
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+ plot_interface_type _for_python_plot(int, double) nogil
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+ vector[vector[pair[vector[value_type], vector[value_type]]]] get_points() nogil
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+
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+ cdef extern from "multiparameter_module_approximation/approximation.h" namespace "Gudhi::multiparameter::mma":
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+ cdef cppclass Module[T=*]:
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+ ctypedef vector[vector[T]] image_type
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+ Module() except + nogil
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+ void resize(unsigned int) nogil
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+ Summand[T]& at(unsigned int) nogil
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+ vector[Summand[T]].iterator begin()
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+ vector[Summand[T]].iterator end()
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+ void clean(const bool) nogil
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+ void fill(const T) nogil
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+ # vector[image_type] get_vectorization(const T,const T, unsigned int,unsigned int,const Box&)
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+ # image_type get_vectorization_in_dimension(const int,const T,unsigned int,unsigned int,const Box&)
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+ void add_summand(Summand[T]) nogil
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+ unsigned int size() const
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+ Box[T] get_box() const
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+ Box[T] get_bounds() nogil const
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+ void set_box(Box[T]) nogil
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+ int get_dimension() const
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+ vector[pair[vector[vector[T]], vector[vector[T]]]] get_corners_of_dimension(unsigned int) nogil
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+ image_type get_vectorization_in_dimension(const int, const T, const T, const bool, Box[T]&, unsigned int, unsigned int) nogil
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+ vector[image_type] get_vectorization(const T, const T, const bool, Box[T], unsigned int, unsigned int) nogil
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+ MultiDiagram[Finitely_critical_multi_filtration[T], T] get_barcode(Line[T]&, const int, const bool) nogil
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+ vector[vector[pair[T,T]]] get_barcode2(Line[T]&, const int) nogil
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+ MultiDiagrams[Finitely_critical_multi_filtration[T],T] get_barcodes(const vector[Finitely_critical_multi_filtration[T]]& , const int, const bool ) nogil
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+ vector[vector[vector[pair[T,T]]]] get_barcodes2(const vector[Line[T]]& , const int, ) nogil
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+ image_type get_landscape(const int,const unsigned int,Box[T],const vector[unsigned int]&) nogil
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+ vector[image_type] get_landscapes(const int,const vector[unsigned int],Box[T],const vector[unsigned int]&) nogil
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+ vector[int] euler_curve(const vector[Finitely_critical_multi_filtration[T]]&) nogil
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+ void rescale(vector[T]&, int) nogil
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+ void translate(vector[T]&, int) nogil
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+ vector[vector[T]] compute_pixels(vector[vector[T]], vector[int], Box[T], T, T, bool,int) nogil
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+ vector[vector[pair[vector[vector[int]],vector[vector[int]]]]] to_idx(vector[vector[T]]) nogil
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+ vector[vector[vector[int]]] to_flat_idx(vector[vector[T]]) nogil
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+ vector[vector[vector[int]]] compute_distances_idx_to(vector[vector[T]],bool, int) nogil
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+ vector[vector[T]] compute_distances_to(vector[vector[T]],bool, int) nogil
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+ vector[T] get_interleavings(Box[T]) nogil
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+ vector[int] get_degree_splits() nogil
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+
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+
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+
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+
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+
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+
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+ cdef inline list[tuple[list[double],list[double]]] _bc2py(vector[pair[vector[double],vector[double]]] bc):
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+ return bc