morphml 1.0.0__py3-none-any.whl

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  1. morphml/__init__.py +14 -0
  2. morphml/api/__init__.py +26 -0
  3. morphml/api/app.py +326 -0
  4. morphml/api/auth.py +193 -0
  5. morphml/api/client.py +338 -0
  6. morphml/api/models.py +132 -0
  7. morphml/api/rate_limit.py +192 -0
  8. morphml/benchmarking/__init__.py +36 -0
  9. morphml/benchmarking/comparison.py +430 -0
  10. morphml/benchmarks/__init__.py +56 -0
  11. morphml/benchmarks/comparator.py +409 -0
  12. morphml/benchmarks/datasets.py +280 -0
  13. morphml/benchmarks/metrics.py +199 -0
  14. morphml/benchmarks/openml_suite.py +201 -0
  15. morphml/benchmarks/problems.py +289 -0
  16. morphml/benchmarks/suite.py +318 -0
  17. morphml/cli/__init__.py +5 -0
  18. morphml/cli/commands/experiment.py +329 -0
  19. morphml/cli/main.py +457 -0
  20. morphml/cli/quickstart.py +312 -0
  21. morphml/config.py +278 -0
  22. morphml/constraints/__init__.py +19 -0
  23. morphml/constraints/handler.py +205 -0
  24. morphml/constraints/predicates.py +285 -0
  25. morphml/core/__init__.py +3 -0
  26. morphml/core/crossover.py +449 -0
  27. morphml/core/dsl/README.md +359 -0
  28. morphml/core/dsl/__init__.py +72 -0
  29. morphml/core/dsl/ast_nodes.py +364 -0
  30. morphml/core/dsl/compiler.py +318 -0
  31. morphml/core/dsl/layers.py +368 -0
  32. morphml/core/dsl/lexer.py +336 -0
  33. morphml/core/dsl/parser.py +455 -0
  34. morphml/core/dsl/search_space.py +386 -0
  35. morphml/core/dsl/syntax.py +199 -0
  36. morphml/core/dsl/type_system.py +361 -0
  37. morphml/core/dsl/validator.py +386 -0
  38. morphml/core/graph/__init__.py +40 -0
  39. morphml/core/graph/edge.py +124 -0
  40. morphml/core/graph/graph.py +507 -0
  41. morphml/core/graph/mutations.py +409 -0
  42. morphml/core/graph/node.py +196 -0
  43. morphml/core/graph/serialization.py +361 -0
  44. morphml/core/graph/visualization.py +431 -0
  45. morphml/core/objectives/__init__.py +20 -0
  46. morphml/core/search/__init__.py +33 -0
  47. morphml/core/search/individual.py +252 -0
  48. morphml/core/search/parameters.py +453 -0
  49. morphml/core/search/population.py +375 -0
  50. morphml/core/search/search_engine.py +340 -0
  51. morphml/distributed/__init__.py +76 -0
  52. morphml/distributed/fault_tolerance.py +497 -0
  53. morphml/distributed/health_monitor.py +348 -0
  54. morphml/distributed/master.py +709 -0
  55. morphml/distributed/proto/README.md +224 -0
  56. morphml/distributed/proto/__init__.py +74 -0
  57. morphml/distributed/proto/worker.proto +170 -0
  58. morphml/distributed/proto/worker_pb2.py +79 -0
  59. morphml/distributed/proto/worker_pb2_grpc.py +423 -0
  60. morphml/distributed/resource_manager.py +416 -0
  61. morphml/distributed/scheduler.py +567 -0
  62. morphml/distributed/storage/__init__.py +33 -0
  63. morphml/distributed/storage/artifacts.py +381 -0
  64. morphml/distributed/storage/cache.py +366 -0
  65. morphml/distributed/storage/checkpointing.py +329 -0
  66. morphml/distributed/storage/database.py +459 -0
  67. morphml/distributed/worker.py +549 -0
  68. morphml/evaluation/__init__.py +5 -0
  69. morphml/evaluation/heuristic.py +237 -0
  70. morphml/exceptions.py +55 -0
  71. morphml/execution/__init__.py +5 -0
  72. morphml/execution/local_executor.py +350 -0
  73. morphml/integrations/__init__.py +28 -0
  74. morphml/integrations/jax_adapter.py +206 -0
  75. morphml/integrations/pytorch_adapter.py +530 -0
  76. morphml/integrations/sklearn_adapter.py +206 -0
  77. morphml/integrations/tensorflow_adapter.py +230 -0
  78. morphml/logging_config.py +93 -0
  79. morphml/meta_learning/__init__.py +66 -0
  80. morphml/meta_learning/architecture_similarity.py +277 -0
  81. morphml/meta_learning/experiment_database.py +240 -0
  82. morphml/meta_learning/knowledge_base/__init__.py +19 -0
  83. morphml/meta_learning/knowledge_base/embedder.py +179 -0
  84. morphml/meta_learning/knowledge_base/knowledge_base.py +313 -0
  85. morphml/meta_learning/knowledge_base/meta_features.py +265 -0
  86. morphml/meta_learning/knowledge_base/vector_store.py +271 -0
  87. morphml/meta_learning/predictors/__init__.py +27 -0
  88. morphml/meta_learning/predictors/ensemble.py +221 -0
  89. morphml/meta_learning/predictors/gnn_predictor.py +552 -0
  90. morphml/meta_learning/predictors/learning_curve.py +231 -0
  91. morphml/meta_learning/predictors/proxy_metrics.py +261 -0
  92. morphml/meta_learning/strategy_evolution/__init__.py +27 -0
  93. morphml/meta_learning/strategy_evolution/adaptive_optimizer.py +226 -0
  94. morphml/meta_learning/strategy_evolution/bandit.py +276 -0
  95. morphml/meta_learning/strategy_evolution/portfolio.py +230 -0
  96. morphml/meta_learning/transfer.py +581 -0
  97. morphml/meta_learning/warm_start.py +286 -0
  98. morphml/optimizers/__init__.py +74 -0
  99. morphml/optimizers/adaptive_operators.py +399 -0
  100. morphml/optimizers/bayesian/__init__.py +52 -0
  101. morphml/optimizers/bayesian/acquisition.py +387 -0
  102. morphml/optimizers/bayesian/base.py +319 -0
  103. morphml/optimizers/bayesian/gaussian_process.py +635 -0
  104. morphml/optimizers/bayesian/smac.py +534 -0
  105. morphml/optimizers/bayesian/tpe.py +411 -0
  106. morphml/optimizers/differential_evolution.py +220 -0
  107. morphml/optimizers/evolutionary/__init__.py +61 -0
  108. morphml/optimizers/evolutionary/cma_es.py +416 -0
  109. morphml/optimizers/evolutionary/differential_evolution.py +556 -0
  110. morphml/optimizers/evolutionary/encoding.py +426 -0
  111. morphml/optimizers/evolutionary/particle_swarm.py +449 -0
  112. morphml/optimizers/genetic_algorithm.py +486 -0
  113. morphml/optimizers/gradient_based/__init__.py +22 -0
  114. morphml/optimizers/gradient_based/darts.py +550 -0
  115. morphml/optimizers/gradient_based/enas.py +585 -0
  116. morphml/optimizers/gradient_based/operations.py +474 -0
  117. morphml/optimizers/gradient_based/utils.py +601 -0
  118. morphml/optimizers/hill_climbing.py +169 -0
  119. morphml/optimizers/multi_objective/__init__.py +56 -0
  120. morphml/optimizers/multi_objective/indicators.py +504 -0
  121. morphml/optimizers/multi_objective/nsga2.py +647 -0
  122. morphml/optimizers/multi_objective/visualization.py +427 -0
  123. morphml/optimizers/nsga2.py +308 -0
  124. morphml/optimizers/random_search.py +172 -0
  125. morphml/optimizers/simulated_annealing.py +181 -0
  126. morphml/plugins/__init__.py +35 -0
  127. morphml/plugins/custom_evaluator_example.py +81 -0
  128. morphml/plugins/custom_optimizer_example.py +63 -0
  129. morphml/plugins/plugin_system.py +454 -0
  130. morphml/reports/__init__.py +30 -0
  131. morphml/reports/generator.py +362 -0
  132. morphml/tracking/__init__.py +7 -0
  133. morphml/tracking/experiment.py +309 -0
  134. morphml/tracking/logger.py +301 -0
  135. morphml/tracking/reporter.py +357 -0
  136. morphml/utils/__init__.py +6 -0
  137. morphml/utils/checkpoint.py +189 -0
  138. morphml/utils/comparison.py +390 -0
  139. morphml/utils/export.py +407 -0
  140. morphml/utils/progress.py +392 -0
  141. morphml/utils/validation.py +392 -0
  142. morphml/version.py +7 -0
  143. morphml/visualization/__init__.py +50 -0
  144. morphml/visualization/analytics.py +423 -0
  145. morphml/visualization/architecture_diagrams.py +353 -0
  146. morphml/visualization/architecture_plot.py +223 -0
  147. morphml/visualization/convergence_plot.py +174 -0
  148. morphml/visualization/crossover_viz.py +386 -0
  149. morphml/visualization/graph_viz.py +338 -0
  150. morphml/visualization/pareto_plot.py +149 -0
  151. morphml/visualization/plotly_dashboards.py +422 -0
  152. morphml/visualization/population.py +309 -0
  153. morphml/visualization/progress.py +260 -0
  154. morphml-1.0.0.dist-info/METADATA +434 -0
  155. morphml-1.0.0.dist-info/RECORD +158 -0
  156. morphml-1.0.0.dist-info/WHEEL +4 -0
  157. morphml-1.0.0.dist-info/entry_points.txt +3 -0
  158. morphml-1.0.0.dist-info/licenses/LICENSE +21 -0
@@ -0,0 +1,359 @@
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+ # MorphML DSL Implementation
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+
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+ This directory contains the complete text-based Domain-Specific Language (DSL) implementation for MorphML, as specified in Phase 1, Component 2.
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+
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+ ## Architecture
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+
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+ ```
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+ Text DSL Source
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+
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+ syntax.py (Token definitions, grammar)
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+
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+ lexer.py (Tokenization)
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+
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+ parser.py (AST construction)
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+
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+ ast_nodes.py (AST node classes)
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+
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+ validator.py (Semantic validation)
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+
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+ type_system.py (Type checking)
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+
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+ compiler.py (Compile to internal IR)
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+
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+ SearchSpace + Config
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+ ```
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+
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+ ## Files Implemented
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+
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+ ### 1. `syntax.py` (~300 LOC)
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+ **Purpose:** Token definitions and grammar rules
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+
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+ **Key Components:**
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+ - `TokenType` enum - All token types (NUMBER, STRING, IDENTIFIER, etc.)
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+ - `KEYWORDS` - Reserved words (SearchSpace, Layer, Evolution, etc.)
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+ - `LAYER_TYPES` - Supported layer types (conv2d, dense, dropout, etc.)
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+ - `OPERATORS` - Operators and delimiters (=, ,, ., etc.)
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+ - Grammar documentation in EBNF notation
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+
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+ ### 2. `lexer.py` (~800 LOC)
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+ **Purpose:** Convert source code into token stream
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+
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+ **Key Classes:**
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+ - `Token` - Represents a single token with type, value, line, column
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+ - `Lexer` - Main lexical analyzer
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+
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+ **Features:**
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+ - Handles numbers (int, float, scientific notation)
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+ - Handles strings (single/double quotes, escape sequences)
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+ - Handles comments (# style)
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+ - Tracks line and column for error messages
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+ - Comprehensive error reporting with context
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+
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+ **Example:**
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+ ```python
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+ from morphml.core.dsl import Lexer
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+
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+ source = "Layer.conv2d(filters=[32, 64])"
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+ lexer = Lexer(source)
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+ tokens = lexer.tokenize()
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+ # Returns: [Token(LAYER, 'Layer'), Token(DOT, '.'), ...]
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+ ```
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+
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+ ### 3. `ast_nodes.py` (~600 LOC)
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+ **Purpose:** Define Abstract Syntax Tree node classes
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+
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+ **Key Classes:**
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+ - `ASTNode` - Base class for all AST nodes
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+ - `ParamNode` - Hyperparameter specification
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+ - `LayerNode` - Layer specification
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+ - `SearchSpaceNode` - Complete search space
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+ - `EvolutionNode` - Evolution configuration
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+ - `ConstraintNode` - Constraint specification
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+ - `ExperimentNode` - Root node (complete experiment)
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+ - `ASTVisitor` - Visitor pattern for AST traversal
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+
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+ **Features:**
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+ - Immutable dataclasses (frozen=True)
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+ - Automatic validation in __post_init__
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+ - Type inference for parameters
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+ - Visitor pattern support
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+
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+ **Example:**
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+ ```python
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+ layer = LayerNode(
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+ layer_type='conv2d',
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+ params={'filters': ParamNode('filters', [32, 64])}
87
+ )
88
+ ```
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+
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+ ### 4. `parser.py` (~1,200 LOC)
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+ **Purpose:** Parse token stream into AST
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+
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+ **Key Classes:**
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+ - `Parser` - Recursive descent parser
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+
96
+ **Methods:**
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+ - `parse()` - Parse complete experiment
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+ - `parse_search_space()` - Parse search space definition
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+ - `parse_layer()` - Parse layer specification
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+ - `parse_evolution()` - Parse evolution config
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+ - `_parse_param_list()` - Parse parameters
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+ - `_parse_value_expr()` - Parse values or value lists
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+
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+ **Features:**
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+ - Recursive descent parsing
106
+ - Clear error messages with position
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+ - Helper methods for token manipulation
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+ - Convenience function `parse_dsl(source)`
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+
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+ **Example:**
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+ ```python
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+ from morphml.core.dsl import Parser, parse_dsl
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+
114
+ source = '''
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+ SearchSpace(
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+ layers=[Layer.conv2d(filters=[32, 64])]
117
+ )
118
+ '''
119
+ ast = parse_dsl(source)
120
+ ```
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+
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+ ### 5. `compiler.py` (~800 LOC)
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+ **Purpose:** Compile AST into executable internal representation
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+
125
+ **Key Classes:**
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+ - `Compiler` - Main compiler
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+ - `CompilationContext` - Tracks compilation state
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+
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+ **Methods:**
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+ - `compile()` - Compile complete experiment
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+ - `_compile_search_space()` - Convert SearchSpaceNode to SearchSpace
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+ - `_compile_layer()` - Convert LayerNode to LayerSpec
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+ - `_compile_evolution()` - Convert to optimizer config
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+ - `_compile_constraint()` - Convert to constraint config
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+
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+ **Features:**
137
+ - Type inference from values
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+ - Parameter mapping (DSL names → internal names)
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+ - Symbol table management
140
+ - Convenience function `compile_dsl(source)`
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+
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+ **Example:**
143
+ ```python
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+ from morphml.core.dsl import compile_dsl
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+
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+ source = "SearchSpace(layers=[Layer.dense(units=[128])])"
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+ result = compile_dsl(source)
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+ search_space = result['search_space']
149
+ ```
150
+
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+ ### 6. `validator.py` (~400 LOC)
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+ **Purpose:** Semantic validation of AST
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+
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+ **Key Classes:**
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+ - `ValidationError` - Represents a validation error
156
+ - `Validator` - Validates AST using visitor pattern
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+
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+ **Validations:**
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+ - Required parameters present
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+ - Parameter values are valid
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+ - Layer types are supported
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+ - Evolution strategy is valid
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+ - Type consistency
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+ - Architectural patterns (conv + pool, etc.)
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+
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+ **Features:**
167
+ - Errors and warnings
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+ - Parameter-specific validation (filters, kernel_size, etc.)
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+ - Layer diversity checking
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+ - Helpful suggestions
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+
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+ **Example:**
173
+ ```python
174
+ from morphml.core.dsl import validate_ast
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+
176
+ errors = validate_ast(ast)
177
+ if errors:
178
+ for error in errors:
179
+ print(error)
180
+ ```
181
+
182
+ ### 7. `type_system.py` (~350 LOC)
183
+ **Purpose:** Type checking for DSL
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+
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+ **Key Classes:**
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+ - `Type` - Type enum (INT, FLOAT, STRING, BOOL, etc.)
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+ - `TypeEnvironment` - Symbol table for types
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+ - `TypeError` - Represents a type error
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+ - `TypeChecker` - Type checker using visitor pattern
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+
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+ **Features:**
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+ - Type inference from values
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+ - Type compatibility checking
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+ - Parameter type requirements per layer
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+ - Scoped type environments
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+
197
+ **Example:**
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+ ```python
199
+ from morphml.core.dsl import check_types
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+
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+ type_errors = check_types(ast)
202
+ if type_errors:
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+ for error in type_errors:
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+ print(error)
205
+ ```
206
+
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+ ## Two Approaches to Defining Search Spaces
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+
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+ ### Approach 1: Pythonic Builder Pattern (Recommended)
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+ ```python
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+ from morphml.core.dsl import SearchSpace, Layer
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+
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+ space = SearchSpace("my_cnn")
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+ space.add_layers(
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+ Layer.conv2d(filters=[32, 64, 128], kernel_size=3),
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+ Layer.relu(),
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+ Layer.maxpool(pool_size=2),
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+ Layer.dense(units=[128, 256])
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+ )
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+ ```
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+
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+ **Advantages:**
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+ - Better IDE support (autocomplete, type hints)
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+ - Easier debugging (Python stack traces)
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+ - No context switching
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+ - Direct Python integration
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+
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+ ### Approach 2: Text-based DSL
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+ ```python
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+ from morphml.core.dsl import compile_dsl
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+
232
+ source = """
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+ SearchSpace(
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+ layers=[
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+ Layer.conv2d(filters=[32, 64, 128], kernel_size=3),
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+ Layer.relu(),
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+ Layer.maxpool(pool_size=2),
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+ Layer.dense(units=[128, 256])
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+ ]
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+ )
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+ """
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+
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+ result = compile_dsl(source)
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+ space = result['search_space']
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+ ```
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+
247
+ **Advantages:**
248
+ - Declarative syntax
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+ - External configuration files
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+ - Dynamic generation
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+ - Tool integration
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+ - Human-readable serialization
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+
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+ ## Complete Pipeline Example
255
+
256
+ ```python
257
+ from morphml.core.dsl import (
258
+ Lexer, Parser, Compiler,
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+ Validator, TypeChecker,
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+ parse_dsl, compile_dsl
261
+ )
262
+
263
+ # Define experiment in DSL
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+ source = """
265
+ SearchSpace(
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+ name="cifar10_cnn",
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+ layers=[
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+ Layer.conv2d(filters=[32, 64], kernel_size=3),
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+ Layer.relu(),
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+ Layer.dense(units=[128, 256])
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+ ]
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+ )
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+
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+ Evolution(
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+ strategy="genetic",
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+ population_size=50,
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+ num_generations=100
278
+ )
279
+ """
280
+
281
+ # Method 1: Manual pipeline
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+ lexer = Lexer(source)
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+ tokens = lexer.tokenize()
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+
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+ parser = Parser(tokens)
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+ ast = parser.parse()
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+
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+ validator = Validator()
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+ errors = validator.validate(ast)
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+
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+ checker = TypeChecker()
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+ type_errors = checker.check(ast)
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+
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+ compiler = Compiler()
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+ result = compiler.compile(ast)
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+
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+ # Method 2: Convenience functions
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+ ast = parse_dsl(source) # Lex + Parse
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+ result = compile_dsl(source) # Full pipeline
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+
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+ # Use the compiled result
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+ search_space = result['search_space']
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+ evolution_config = result['evolution']
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+ ```
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+
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+ ## Grammar Reference
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+
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+ ```ebnf
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+ experiment := search_space_def [evolution_def] [constraint_list]
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+ search_space_def := "SearchSpace" "(" [space_params] ")"
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+ space_params := "layers" "=" layer_list ["," param_list]
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+ layer_list := "[" layer_def ("," layer_def)* "]"
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+ layer_def := "Layer" "." layer_type "(" [param_list] ")"
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+ evolution_def := "Evolution" "(" param_list ")"
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+
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+ param_list := param ("," param)*
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+ param := IDENTIFIER "=" value_expr
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+ value_expr := value | value_list
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+ value_list := "[" value ("," value)* "]"
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+ value := NUMBER | STRING | BOOLEAN | IDENTIFIER
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+ ```
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+
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+ ## Testing
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+
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+ Run the example file to see the DSL in action:
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+
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+ ```bash
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+ python examples/dsl_example.py
329
+ ```
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+
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+ ## Status
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+
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+ ✅ **Complete Implementation** (as per Phase 1, Component 2 specification)
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+
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+ - All 7 files implemented
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+ - ~3,500 lines of code total
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+ - Full lexer/parser/compiler pipeline
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+ - Semantic validation
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+ - Type checking
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+ - Error handling with line/column tracking
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+ - Comprehensive examples
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+
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+ ## Integration
344
+
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+ Both DSL approaches are fully integrated and exported from `morphml.core.dsl`:
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+
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+ ```python
348
+ from morphml.core.dsl import (
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+ # Pythonic API
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+ Layer, LayerSpec, SearchSpace,
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+
352
+ # Text-based DSL
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+ Lexer, Parser, Compiler,
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+ parse_dsl, compile_dsl,
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+ validate_ast, check_types
356
+ )
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+ ```
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+
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+ Users can choose either approach based on their needs!
@@ -0,0 +1,72 @@
1
+ """Domain-Specific Language for search space definition.
2
+
3
+ MorphML provides two approaches to defining search spaces:
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+
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+ 1. Pythonic Builder Pattern (Recommended):
6
+ - Direct Python API
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+ - Better IDE support
8
+ - Type checking
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+ - Example: space.add_layers(Layer.conv2d(filters=[32, 64]))
10
+
11
+ 2. Text-based DSL (Advanced):
12
+ - Declarative syntax
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+ - Lexer → Parser → AST → Compiler
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+ - Useful for external configuration
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+ - Example: parse_dsl("SearchSpace(layers=[Layer.conv2d(...)])")
16
+ """
17
+
18
+ # Pythonic API (Primary interface)
19
+ from morphml.core.dsl.ast_nodes import (
20
+ ASTNode,
21
+ ASTVisitor,
22
+ ConstraintNode,
23
+ EvolutionNode,
24
+ ExperimentNode,
25
+ LayerNode,
26
+ ParamNode,
27
+ SearchSpaceNode,
28
+ )
29
+ from morphml.core.dsl.compiler import Compiler, compile_dsl, compile_to_search_space
30
+ from morphml.core.dsl.layers import Layer, LayerSpec
31
+ from morphml.core.dsl.lexer import Lexer, Token
32
+ from morphml.core.dsl.parser import Parser, parse_dsl
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+ from morphml.core.dsl.search_space import SearchSpace, create_cnn_space, create_mlp_space
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+
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+ # Text-based DSL components
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+ from morphml.core.dsl.syntax import KEYWORDS, LAYER_TYPES, OPERATORS, TokenType
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+ from morphml.core.dsl.type_system import Type, TypeChecker, check_types
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+ from morphml.core.dsl.validator import Validator, validate_ast
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+
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+ __all__ = [
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+ # Pythonic API
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+ "Layer",
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+ "LayerSpec",
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+ "SearchSpace",
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+ "create_cnn_space",
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+ "create_mlp_space",
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+ # Text-based DSL
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+ "TokenType",
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+ "KEYWORDS",
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+ "LAYER_TYPES",
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+ "OPERATORS",
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+ "Lexer",
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+ "Token",
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+ "Parser",
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+ "parse_dsl",
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+ "ASTNode",
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+ "ParamNode",
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+ "LayerNode",
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+ "SearchSpaceNode",
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+ "EvolutionNode",
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+ "ConstraintNode",
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+ "ExperimentNode",
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+ "ASTVisitor",
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+ "Compiler",
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+ "compile_dsl",
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+ "compile_to_search_space",
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+ "Validator",
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+ "validate_ast",
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+ "TypeChecker",
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+ "Type",
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+ "check_types",
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+ ]