microlive 1.0.11__py3-none-any.whl
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- microlive/__init__.py +50 -0
- microlive/data/__init__.py +0 -0
- microlive/data/icons/__init__.py +0 -0
- microlive/data/icons/icon_micro.png +0 -0
- microlive/data/models/__init__.py +0 -0
- microlive/gui/__init__.py +1 -0
- microlive/gui/app.py +16340 -0
- microlive/gui/main.py +86 -0
- microlive/gui/micro_mac.command +18 -0
- microlive/gui/micro_windows.bat +24 -0
- microlive/imports.py +209 -0
- microlive/microscopy.py +13321 -0
- microlive/ml_spot_detection.py +252 -0
- microlive/pipelines/__init__.py +17 -0
- microlive/pipelines/pipeline_FRAP.py +1225 -0
- microlive/pipelines/pipeline_folding_efficiency.py +297 -0
- microlive/pipelines/pipeline_particle_tracking.py +489 -0
- microlive/pipelines/pipeline_spot_detection_no_tracking.py +368 -0
- microlive/utils/__init__.py +13 -0
- microlive/utils/device.py +99 -0
- microlive/utils/resources.py +60 -0
- microlive-1.0.11.dist-info/METADATA +361 -0
- microlive-1.0.11.dist-info/RECORD +26 -0
- microlive-1.0.11.dist-info/WHEEL +4 -0
- microlive-1.0.11.dist-info/entry_points.txt +2 -0
- microlive-1.0.11.dist-info/licenses/LICENSE +674 -0
microlive/__init__.py
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# -*- coding: utf-8 -*-
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"""
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MicroLive - Live-cell microscopy image analysis toolkit
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A Python-based GUI application for live-cell microscopy image analysis
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and single-molecule measurements.
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Example usage:
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# Programmatic API
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from microlive import microscopy as mi
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# Or: import microlive.microscopy as mi
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# Load and analyze images
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reader = mi.ReadLif("experiment.lif")
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images = reader.get_images()
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# Run segmentation
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seg = mi.CellSegmentation(images[0])
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masks = seg.calculate_masks()
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Authors:
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Luis U. Aguilera, William S. Raymond, Rhiannon M. Sears,
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Nathan L. Nowling, Brian Munsky, Ning Zhao
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"""
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__version__ = "1.0.11"
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__author__ = "Luis U. Aguilera, William S. Raymond, Rhiannon M. Sears, Nathan L. Nowling, Brian Munsky, Ning Zhao"
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# Package name (for backward compatibility)
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name = 'microlive'
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# Direct submodule access (import these directly, not through __getattr__)
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# Users should use:
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# from microlive import microscopy as mi
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# import microlive.microscopy as mi
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# from microlive.microscopy import ReadLif
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#
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# Note: We intentionally do NOT import microscopy here to avoid
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# circular imports with imports.py and slow startup times.
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__all__ = [
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"__version__",
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"__author__",
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# Submodules (listed for pdoc documentation discovery)
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"microscopy",
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"imports",
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"pipelines",
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"utils",
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"gui",
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]
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"""MicroLive GUI module."""
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