megadetector 5.0.8__py3-none-any.whl → 5.0.9__py3-none-any.whl

data_management/databases/remove_corrupted_images_from_db.py

@@ -1,191 +0,0 @@
-########
-#
-# remove_corrupted_images_from_db.py
-#
-# Given a coco-camera-traps .json file, checks all images for corruption
-# and generates a new .json file that only contains the non-corrupted images.
-#
-########
-
-#%% Imports and constants
-
-import argparse
-import gc
-import json
-import sys
-import os
-import time
-
-from multiprocessing.pool import ThreadPool
-
-import humanfriendly
-import numpy as np
-import tensorflow as tf
-
-N_THREADS = 16
-DEBUG_MAX_IMAGES = -1
-IMAGE_PRINT_FREQUENCY = 10
-
-
-#%% Function definitions
-
-def check_images(images, image_file_root):    
-    """
-    Checks all the images in [images] for corruption using TF.
-    
-    [images] is a list of image dictionaries, as they would appear in COCO
-    files.
-    
-    Returns a dictionary mapping image IDs to booleans. 
-    """    
-    
-    # I sometimes pass in a list of images, sometimes a dict with a single
-    # element mapping a job ID to the list of images
-    if isinstance(images,dict):
-        assert(len(images) == 1)
-        jobID = list(images.keys())[0]
-        images = images[jobID]
-    else:
-        jobID = 0
-        
-    keep_im = {im['id']:True for im in images}
-            
-    count = 0
-    nImages = len(images)
-    
-    # We're about to start a lot of TF sessions, and we don't want gobs 
-    # of debugging information printing out for every session.
-    os.environ['TF_CPP_MIN_LOG_LEVEL'] = '3'
-    config=tf.ConfigProto(log_device_placement=False)
-    
-    # At some point we were creating a single session and looping over images
-    # within that session, but the only way I found to reliably not run out
-    # of GPU memory was to create a session per image and gc.collect() after
-    # each session.
-    for iImage,im in enumerate(images):
-
-        with tf.Session(config=config) as sess:
-
-            if ((DEBUG_MAX_IMAGES > 0) and (iImage >= DEBUG_MAX_IMAGES)):
-                print('Breaking after {} images'.format(DEBUG_MAX_IMAGES))
-                break
-            
-            if (count % IMAGE_PRINT_FREQUENCY == 0):
-                print('Job {}: processed {} of {} images'.format(jobID,count,nImages))
-                
-            count += 1
-            image_file = os.path.join(image_file_root,im['file_name'])
-            assert(os.path.isfile(image_file))
-            
-            try:
-                image_data = tf.gfile.FastGFile(image_file,'rb').read()
-                image = tf.image.decode_jpeg(image_data)
-                sess.run(image)
-            except:
-                keep_im[im['id']] = False
-
-        gc.collect()
-        
-    return keep_im
-
-
-def remove_corrupted_images_from_database(data, image_file_root):
-    """
-    Given the COCO database [data], checks all images for corruption using
-    TF, and returns a subset of [data] containing only non-corrupted images.
-    """
-    
-    # Map Image IDs to boolean (should I keep this image?)
-    images = data['images']
-    
-    if (N_THREADS == 1):
-        
-        keep_im = check_images(images,image_file_root)
-        
-    else:
-        
-        start = time.time()
-        imageChunks = np.array_split(images,N_THREADS)
-        # Convert to lists, append job numbers to the image lists
-        for iChunk in range(0,len(imageChunks)):
-            imageChunks[iChunk] = list(imageChunks[iChunk])
-            imageChunks[iChunk] = {iChunk:imageChunks[iChunk]}
-        pool = ThreadPool(N_THREADS)
-        # results = pool.imap_unordered(lambda x: fetch_url(x,nImages), indexedUrlList)
-        results = pool.map(lambda x: check_images(x,image_file_root), imageChunks)
-        processingTime = time.time() - start
-        
-        # Merge results
-        keep_im = {}
-        for d in results:
-            keep_im.update(d)
-        bValid = keep_im.values()
-            
-        print("Checked image corruption in {}, found {} invalid images (of {})".format(
-                humanfriendly.format_timespan(processingTime),
-                len(bValid)-sum(bValid),len(bValid)))
-        
-    data['images'] = [im for im in data['images'] if keep_im[im['id']]]
-    data['annotations'] = [ann for ann in data['annotations'] if keep_im[ann['image_id']]]
-    
-    return data
-
-
-#%% Interactive driver
-
-if False:    
-    
-    #%%
-    
-    # base_dir = r'D:\temp\snapshot_serengeti_tfrecord_generation'
-    base_dir = r'/data/ss_corruption_check'
-    input_file = os.path.join(base_dir,'imerit_batch7_renamed.json')
-    output_file = os.path.join(base_dir,'imerit_batch7_renamed_uncorrupted.json')
-    image_file_root = os.path.join(base_dir,'imerit_batch7_images_renamed')
-    assert(os.path.isfile(input_file))
-    assert(os.path.isdir(image_file_root))
-
-    # Load annotations
-    with open(input_file,'r') as f:
-            data = json.load(f)    
-            
-    # Check for corruption
-    data_uncorrupted = remove_corrupted_images_from_database(data,image_file_root)
-    
-    # Write out only the uncorrupted data
-    json.dump(data_uncorrupted, open(output_file,'w'))
-    
-    
-#%% Command-line driver 
-
-def main():
-    
-    parser = argparse.ArgumentParser(description = 'Remove images from a .json file that can''t be opened in TF')
-
-    parser.add_argument('--input_file', dest='input_file',
-                         help='Path to .json database that includes corrupted jpegs',
-                         type=str, required=True)
-    parser.add_argument('--image_file_root', dest='image_file_root',
-                         help='Path to image files',
-                         type=str, required=True)
-    parser.add_argument('--output_file', dest='output_file',
-                         help='Path to store uncorrupted .json database',
-                         type=str, required=True)
-
-    if len(sys.argv[1:]) == 0:
-        parser.print_help()
-        parser.exit()
-
-    args = parser.parse_args()
-    
-    print('Reading input file')
-    with open(args.input_file,'r') as f:
-        data = json.load(f)
-    print('Removing corrupted images from database')
-    uncorrupted_data = remove_corrupted_images_from_database(data, args.image_file_root)
-
-    json.dump(uncorrupted_data, open(args.output_file,'w'))
-
-
-if __name__ == '__main__':    
-    main()

detection/detector_training/copy_checkpoints.py

@@ -1,43 +0,0 @@
-########
-#
-# copy_checkpoints.py
-#
-# Run this script with specified source_dir and target_dir while the model is training to make a copy
-# of every checkpoint (checkpoints are kept once an hour by default and is difficult to adjust)
-#
-########
-
-#%% Imports and constants
-
-import time
-import os
-import shutil
-
-check_every_n_minutes = 10
-
-source_dir = '/datadrive/megadetectorv3/experiments/190425'
-target_dir = '/datadrive/megadetectorv3/experiments/0425_checkpoints'
-
-os.makedirs(target_dir, exist_ok=True)
-
-
-#%% Main loop
-
-num_checks = 0
-
-while True:
-    
-    num_checks += 1
-    print('Checking round {}.'.format(num_checks))
-
-    for f in os.listdir(source_dir):
-        # do not copy event or evaluation results
-        if f.startswith('model') or f.startswith('graph'):
-            target_path = os.path.join(target_dir, f)
-            if not os.path.exists(target_path):
-                _ = shutil.copy(os.path.join(source_dir, f), target_path)
-                print('Copied {}.'.format(f))
-
-    print('End of round {}.'.format(num_checks))
-
-    time.sleep(check_every_n_minutes * 60)

megadetector-5.0.8.dist-info/RECORD

@@ -1,205 +0,0 @@
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