mat3ra-esse 2025.7.1.post0__py3-none-any.whl → 2025.7.29.post0__py3-none-any.whl

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  1. mat3ra/esse/data/examples.py +1 -1
  2. mat3ra/esse/data/schemas.py +1 -1
  3. mat3ra/esse/models/apse/file/applications/espresso/7.2/pw_x.py +6 -6
  4. mat3ra/esse/models/core/abstract/vector_2d.py +13 -0
  5. mat3ra/esse/models/core/primitive/array_of_2_numbers.py +13 -0
  6. mat3ra/esse/models/core/reusable/energy.py +2 -2
  7. mat3ra/esse/models/element.py +6 -6
  8. mat3ra/esse/models/job/__init__.py +8 -0
  9. mat3ra/esse/models/material/__init__.py +14 -14
  10. mat3ra/esse/models/materials_category/compound_pristine_structures/two_dimensional/interface/__init__.py +3 -0
  11. mat3ra/esse/models/materials_category/compound_pristine_structures/two_dimensional/interface/configuration.py +6039 -0
  12. mat3ra/esse/models/materials_category/defective_structures/one_dimensional/grain_boundary_linear/__init__.py +3 -0
  13. mat3ra/esse/models/materials_category/defective_structures/one_dimensional/grain_boundary_linear/configuration.py +6043 -0
  14. mat3ra/esse/models/materials_category/defective_structures/two_dimensional/__init__.py +3 -0
  15. mat3ra/esse/models/materials_category/defective_structures/two_dimensional/adatom/__init__.py +3 -0
  16. mat3ra/esse/models/materials_category/defective_structures/two_dimensional/adatom/configuration.py +2116 -0
  17. mat3ra/esse/models/materials_category/defective_structures/two_dimensional/base_configuration.py +1561 -0
  18. mat3ra/esse/models/materials_category/defective_structures/two_dimensional/grain_boundary_planar/__init__.py +3 -0
  19. mat3ra/esse/models/materials_category/defective_structures/two_dimensional/grain_boundary_planar/configuration.py +6039 -0
  20. mat3ra/esse/models/materials_category/defective_structures/two_dimensional/island/__init__.py +3 -0
  21. mat3ra/esse/models/materials_category/defective_structures/two_dimensional/island/configuration.py +2888 -0
  22. mat3ra/esse/models/materials_category/defective_structures/two_dimensional/terrace/__init__.py +3 -0
  23. mat3ra/esse/models/materials_category/defective_structures/two_dimensional/terrace/configuration.py +2892 -0
  24. mat3ra/esse/models/materials_category/defective_structures/zero_dimensional/point_defect/__init__.py +3 -0
  25. mat3ra/esse/models/materials_category/defective_structures/zero_dimensional/point_defect/base_configuration.py +544 -0
  26. mat3ra/esse/models/materials_category/defective_structures/zero_dimensional/point_defect/interstitial.py +1099 -0
  27. mat3ra/esse/models/materials_category/defective_structures/zero_dimensional/point_defect/substitutional.py +1099 -0
  28. mat3ra/esse/models/materials_category/defective_structures/zero_dimensional/point_defect/vacancy.py +556 -0
  29. mat3ra/esse/models/materials_category/pristine_structures/three_dimensional/ideal_crystal.py +14 -14
  30. mat3ra/esse/models/materials_category/pristine_structures/two_dimensional/nanoribbon.py +1582 -0
  31. mat3ra/esse/models/materials_category/pristine_structures/two_dimensional/nanotape.py +1148 -0
  32. mat3ra/esse/models/materials_category/pristine_structures/two_dimensional/slab.py +78 -94
  33. mat3ra/esse/models/materials_category/pristine_structures/two_dimensional/slab_strained_supercell.py +1147 -0
  34. mat3ra/esse/models/materials_category/pristine_structures/two_dimensional/slab_strained_supercell_with_gap.py +1151 -0
  35. mat3ra/esse/models/materials_category/processed_structures/two_dimensional/passivation/__init__.py +3 -0
  36. mat3ra/esse/models/materials_category/processed_structures/two_dimensional/passivation/configuration.py +1232 -0
  37. mat3ra/esse/models/materials_category_components/entities/auxiliary/one_dimensional/__init__.py +3 -0
  38. mat3ra/esse/models/materials_category_components/entities/auxiliary/one_dimensional/miller_indices_2d.py +16 -0
  39. mat3ra/esse/models/materials_category_components/entities/auxiliary/zero_dimensional/crystal_site.py +527 -2
  40. mat3ra/esse/models/materials_category_components/entities/auxiliary/zero_dimensional/point_defect_site.py +676 -0
  41. mat3ra/esse/models/materials_category_components/entities/auxiliary/zero_dimensional/void_region.py +555 -0
  42. mat3ra/esse/models/materials_category_components/entities/auxiliary/zero_dimensional/void_site.py +1576 -0
  43. mat3ra/esse/models/materials_category_components/entities/core/three_dimensional/crystal.py +14 -14
  44. mat3ra/esse/models/materials_category_components/entities/core/two_dimensional/vacuum.py +14 -14
  45. mat3ra/esse/models/materials_category_components/entities/core/zero_dimensional/vacancy.py +22 -0
  46. mat3ra/esse/models/materials_category_components/entities/reusable/one_dimensional/__init__.py +3 -0
  47. mat3ra/esse/models/materials_category_components/entities/reusable/one_dimensional/crystal_lattice_base.py +541 -0
  48. mat3ra/esse/models/materials_category_components/entities/reusable/one_dimensional/crystal_lattice_lines.py +545 -0
  49. mat3ra/esse/models/materials_category_components/entities/reusable/one_dimensional/crystal_lattice_lines_unique_repeated.py +708 -0
  50. mat3ra/esse/models/materials_category_components/entities/reusable/three_dimensional/crystal_lattice_base.py +541 -0
  51. mat3ra/esse/models/materials_category_components/entities/reusable/three_dimensional/strained_non_uniform.py +14 -14
  52. mat3ra/esse/models/materials_category_components/entities/reusable/three_dimensional/strained_uniform.py +14 -14
  53. mat3ra/esse/models/materials_category_components/entities/reusable/three_dimensional/supercell.py +14 -14
  54. mat3ra/esse/models/materials_category_components/entities/reusable/two_dimensional/atomic_layers.py +4 -4
  55. mat3ra/esse/models/materials_category_components/entities/reusable/two_dimensional/atomic_layers_unique.py +4 -4
  56. mat3ra/esse/models/materials_category_components/entities/reusable/two_dimensional/atomic_layers_unique_repeated.py +4 -4
  57. mat3ra/esse/models/materials_category_components/entities/reusable/two_dimensional/crystal_lattice_planes.py +18 -18
  58. mat3ra/esse/models/materials_category_components/entities/reusable/two_dimensional/slab_stack_configuration.py +1561 -0
  59. mat3ra/esse/models/materials_category_components/entities/reusable/two_dimensional/slab_unit_cell.py +74 -77
  60. mat3ra/esse/models/materials_category_components/operations/core/combinations/enums.py +13 -0
  61. mat3ra/esse/models/materials_category_components/operations/core/combinations/merge.py +9 -981
  62. mat3ra/esse/models/materials_category_components/operations/core/combinations/stack.py +3 -947
  63. mat3ra/esse/models/materials_category_components/operations/core/modifications/perturb.py +538 -0
  64. mat3ra/esse/models/properties_directory/derived_properties.py +11 -11
  65. mat3ra/esse/models/properties_directory/non_scalar/density_of_states.py +2 -2
  66. mat3ra/esse/models/properties_directory/non_scalar/phonon_dispersions.py +2 -2
  67. mat3ra/esse/models/properties_directory/non_scalar/phonon_dos.py +2 -2
  68. mat3ra/esse/models/properties_directory/non_scalar/total_energy_contributions.py +50 -50
  69. mat3ra/esse/models/properties_directory/non_scalar/vibrational_spectrum.py +2 -2
  70. mat3ra/esse/models/properties_directory/scalar/electron_affinity.py +2 -2
  71. mat3ra/esse/models/properties_directory/scalar/fermi_energy.py +2 -2
  72. mat3ra/esse/models/properties_directory/scalar/formation_energy.py +2 -2
  73. mat3ra/esse/models/properties_directory/scalar/ionization_potential.py +2 -2
  74. mat3ra/esse/models/properties_directory/scalar/reaction_energy_barrier.py +2 -2
  75. mat3ra/esse/models/properties_directory/scalar/surface_energy.py +2 -2
  76. mat3ra/esse/models/properties_directory/scalar/total_energy.py +2 -2
  77. mat3ra/esse/models/properties_directory/scalar/valence_band_offset.py +2 -2
  78. mat3ra/esse/models/properties_directory/scalar/zero_point_energy.py +2 -2
  79. mat3ra/esse/models/properties_directory/structural/basis/__init__.py +2 -2
  80. mat3ra/esse/models/properties_directory/structural/molecular_pattern.py +4 -4
  81. mat3ra/esse/models/properties_directory/workflow/convergence/ionic.py +2 -2
  82. mat3ra/esse/models/software/flavor.py +4 -0
  83. mat3ra/esse/models/software_directory/ml/unit/execution/__init__.py +16 -0
  84. mat3ra/esse/models/software_directory/ml/unit/execution/evaluate/cross_validate.py +4 -0
  85. mat3ra/esse/models/software_directory/ml/unit/execution/initialize.py +4 -0
  86. mat3ra/esse/models/software_directory/ml/unit/execution/score.py +4 -0
  87. mat3ra/esse/models/software_directory/ml/unit/execution/train.py +4 -0
  88. mat3ra/esse/models/software_directory/modeling/unit/execution.py +4 -0
  89. mat3ra/esse/models/software_directory/scripting/unit/execution.py +4 -0
  90. mat3ra/esse/models/workflow/__init__.py +8 -0
  91. mat3ra/esse/models/workflow/subworkflow/__init__.py +4 -0
  92. mat3ra/esse/models/workflow/subworkflow/unit.py +4 -0
  93. mat3ra/esse/models/workflow/unit/__init__.py +4 -0
  94. mat3ra/esse/models/workflow/unit/execution.py +4 -0
  95. {mat3ra_esse-2025.7.1.post0.dist-info → mat3ra_esse-2025.7.29.post0.dist-info}/METADATA +5 -5
  96. {mat3ra_esse-2025.7.1.post0.dist-info → mat3ra_esse-2025.7.29.post0.dist-info}/RECORD +99 -58
  97. {mat3ra_esse-2025.7.1.post0.dist-info → mat3ra_esse-2025.7.29.post0.dist-info}/WHEEL +0 -0
  98. {mat3ra_esse-2025.7.1.post0.dist-info → mat3ra_esse-2025.7.29.post0.dist-info}/licenses/LICENSE.md +0 -0
  99. {mat3ra_esse-2025.7.1.post0.dist-info → mat3ra_esse-2025.7.29.post0.dist-info}/top_level.txt +0 -0
@@ -0,0 +1,1099 @@
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+ # generated by datamodel-codegen:
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+ # filename: materials_category/defective_structures/zero_dimensional/point_defect/substitutional.json
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+ # version: 0.28.5
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+
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+ from __future__ import annotations
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+
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+ from enum import Enum
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+ from typing import Any, Dict, List, Literal, Optional, Union
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+
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+ from pydantic import BaseModel, Field, RootModel, confloat, conint
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+
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+
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+ class Value(Enum):
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+ H = "H"
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+ He = "He"
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+ Li = "Li"
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+ Be = "Be"
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+ B = "B"
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+ C = "C"
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+ N = "N"
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+ O = "O"
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+ F = "F"
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+ Ne = "Ne"
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+ Na = "Na"
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+ Mg = "Mg"
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+ Al = "Al"
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+ Si = "Si"
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+ P = "P"
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+ S = "S"
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+ Cl = "Cl"
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+ Ar = "Ar"
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+ K = "K"
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+ Ca = "Ca"
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+ Sc = "Sc"
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+ Ti = "Ti"
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+ V = "V"
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+ Cr = "Cr"
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+ Mn = "Mn"
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+ Fe = "Fe"
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+ Co = "Co"
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+ Ni = "Ni"
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+ Cu = "Cu"
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+ Zn = "Zn"
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+ Ga = "Ga"
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+ Ge = "Ge"
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+ As = "As"
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+ Se = "Se"
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+ Br = "Br"
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+ Kr = "Kr"
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+ Rb = "Rb"
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+ Sr = "Sr"
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+ Y = "Y"
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+ Zr = "Zr"
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+ Nb = "Nb"
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+ Mo = "Mo"
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+ Tc = "Tc"
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+ Ru = "Ru"
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+ Rh = "Rh"
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+ Pd = "Pd"
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+ Ag = "Ag"
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+ Cd = "Cd"
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+ In = "In"
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+ Sn = "Sn"
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+ Sb = "Sb"
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+ Te = "Te"
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+ I = "I"
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+ Xe = "Xe"
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+ Cs = "Cs"
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+ Ba = "Ba"
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+ La = "La"
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+ Ce = "Ce"
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+ Pr = "Pr"
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+ Nd = "Nd"
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+ Pm = "Pm"
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+ Sm = "Sm"
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+ Eu = "Eu"
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+ Gd = "Gd"
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+ Tb = "Tb"
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+ Dy = "Dy"
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+ Ho = "Ho"
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+ Er = "Er"
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+ Tm = "Tm"
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+ Yb = "Yb"
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+ Lu = "Lu"
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+ Hf = "Hf"
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+ Ta = "Ta"
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+ W = "W"
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+ Re = "Re"
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+ Os = "Os"
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+ Ir = "Ir"
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+ Pt = "Pt"
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+ Au = "Au"
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+ Hg = "Hg"
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+ Tl = "Tl"
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+ Pb = "Pb"
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+ Bi = "Bi"
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+ Po = "Po"
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+ At = "At"
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+ Rn = "Rn"
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+ Fr = "Fr"
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+ Ra = "Ra"
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+ Ac = "Ac"
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+ Th = "Th"
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+ Pa = "Pa"
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+ U = "U"
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+ Np = "Np"
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+ Pu = "Pu"
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+ Am = "Am"
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+ Cm = "Cm"
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+ Bk = "Bk"
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+ Cf = "Cf"
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+ Es = "Es"
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+ Fm = "Fm"
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+ Md = "Md"
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+ No = "No"
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+ Lr = "Lr"
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+ Rf = "Rf"
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+ Db = "Db"
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+ Sg = "Sg"
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+ Bh = "Bh"
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+ Hs = "Hs"
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+ Mt = "Mt"
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+ Ds = "Ds"
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+ Rg = "Rg"
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+ Cn = "Cn"
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+ Nh = "Nh"
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+ Fl = "Fl"
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+ Mc = "Mc"
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+ Lv = "Lv"
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+ Ts = "Ts"
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+ Og = "Og"
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+
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+
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+ class Value193(Enum):
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+ X = "X"
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+ Vac = "Vac"
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+
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+
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+ class AtomicElementSchema(BaseModel):
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+ value: Union[Value, Value193]
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+ """
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+ All elements, including extra elements
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+ """
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+ id: int
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+ """
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+ integer id of this entry
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+ """
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+
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+
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+ class AtomicCoordinateSchema(BaseModel):
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+ value: List[float] = Field(..., max_length=3, min_length=3, title="coordinate 3d schema")
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+ """
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+ value of this entry
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+ """
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+ id: int
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+ """
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+ integer id of this entry
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+ """
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+
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+
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+ class BasisUnitsEnum(Enum):
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+ crystal = "crystal"
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+ cartesian = "cartesian"
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+
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+
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+ class AtomicLabelSchema(BaseModel):
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+ value: Union[Union[int, str, float], conint(ge=1, le=9)]
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+ """
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+ value of this entry
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+ """
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+ id: int
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+ """
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+ integer id of this entry
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+ """
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+
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+
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+ class BasisSchema(BaseModel):
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+ elements: List[AtomicElementSchema] = Field(..., title="atomic elements schema")
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+ """
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+ atomic elements schema
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+ """
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+ coordinates: List[AtomicCoordinateSchema] = Field(..., title="atomic coordinates schema")
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+ """
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+ atomic coordinates schema
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+ """
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+ units: Optional[BasisUnitsEnum] = Field("crystal", title="basis units enum")
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+ labels: Optional[List[AtomicLabelSchema]] = Field(None, title="atomic labels schema")
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+ """
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+ atomic labels schema
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+ """
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+
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+
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+ class LatticeVectorsUnitsEnum(Enum):
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+ angstrom = "angstrom"
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+ bohr = "bohr"
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+
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+
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+ class LatticeVectorsSchema(BaseModel):
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+ a: List[float] = Field(..., max_length=3, min_length=3, title="vector 3d schema")
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+ b: List[float] = Field(..., max_length=3, min_length=3, title="vector 3d schema")
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+ c: List[float] = Field(..., max_length=3, min_length=3, title="vector 3d schema")
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+ alat: Optional[float] = 1
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+ """
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+ lattice parameter for fractional coordinates
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+ """
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+ units: Optional[LatticeVectorsUnitsEnum] = Field("angstrom", title="lattice vectors units enum")
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+
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+
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+ class LatticeTypeEnum(Enum):
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+ CUB = "CUB"
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+ BCC = "BCC"
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+ FCC = "FCC"
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+ TET = "TET"
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+ MCL = "MCL"
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+ ORC = "ORC"
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+ ORCC = "ORCC"
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+ ORCF = "ORCF"
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+ ORCI = "ORCI"
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+ HEX = "HEX"
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+ BCT = "BCT"
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+ TRI = "TRI"
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+ MCLC = "MCLC"
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+ RHL = "RHL"
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+
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+
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+ class LatticeUnitsLengthEnum(Enum):
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+ angstrom = "angstrom"
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+ bohr = "bohr"
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+
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+
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+ class LatticeUnitsAngleEnum(Enum):
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+ degree = "degree"
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+ radian = "radian"
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+
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+
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+ class LatticeUnitsSchema(BaseModel):
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+ length: Optional[LatticeUnitsLengthEnum] = Field("angstrom", title="lattice units length enum")
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+ angle: Optional[LatticeUnitsAngleEnum] = Field("degree", title="lattice units angle enum")
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+
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+
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+ class LatticeSchema(BaseModel):
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+ a: float
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+ """
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+ length of the first lattice vector
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+ """
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+ b: float
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+ """
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+ length of the second lattice vector
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+ """
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+ c: float
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+ """
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+ length of the third lattice vector
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+ """
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+ alpha: float
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+ """
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+ angle between first and second lattice vector
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+ """
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+ beta: float
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+ """
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+ angle between second and third lattice vector
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+ """
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+ gamma: float
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+ """
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+ angle between first and third lattice vector
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+ """
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+ vectors: Optional[LatticeVectorsSchema] = Field(None, title="lattice vectors schema")
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+ type: Optional[LatticeTypeEnum] = Field("TRI", title="lattice type enum")
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+ units: Optional[LatticeUnitsSchema] = Field(
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+ default_factory=lambda: LatticeUnitsSchema.model_validate({"length": "angstrom", "angle": "degree"}),
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+ title="Lattice units schema",
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+ )
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+
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+
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+ class Name(Enum):
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+ volume = "volume"
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+
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+
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+ class Units(Enum):
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+ angstrom_3 = "angstrom^3"
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+
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+
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+ class VolumeSchema(BaseModel):
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+ name: Literal["0#-datamodel-code-generator-#-object-#-special-#"]
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+ units: Optional[Units] = None
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+ value: float
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+
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+
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+ class Name775(Enum):
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+ density = "density"
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+
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+
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+ class Units313(Enum):
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+ g_cm_3 = "g/cm^3"
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+
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+
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+ class DensitySchema(BaseModel):
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+ name: Literal["1#-datamodel-code-generator-#-object-#-special-#"]
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+ units: Optional[Units313] = None
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+ value: float
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+
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+
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+ class Units314(Enum):
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+ angstrom = "angstrom"
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+
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+
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+ class ScalarSchema(BaseModel):
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+ units: Optional[Units314] = None
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+ value: float
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+
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+
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+ class Name776(Enum):
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+ symmetry = "symmetry"
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+
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+
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+ class SymmetrySchema(BaseModel):
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+ pointGroupSymbol: Optional[str] = None
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+ """
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+ point group symbol in Schoenflies notation
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+ """
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+ spaceGroupSymbol: Optional[str] = None
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+ """
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+ space group symbol in Hermann–Mauguin notation
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+ """
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+ tolerance: Optional[ScalarSchema] = Field(None, title="scalar schema")
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+ """
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+ tolerance used for symmetry calculation
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+ """
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+ name: Literal["2#-datamodel-code-generator-#-object-#-special-#"]
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+
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+
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+ class Name777(Enum):
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+ elemental_ratio = "elemental_ratio"
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+
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+
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+ class ElementalRatio(BaseModel):
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+ name: Literal["3#-datamodel-code-generator-#-object-#-special-#"]
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+ value: confloat(ge=0.0, le=1.0)
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+ element: Optional[str] = None
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+ """
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+ the element this ratio is for
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+ """
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+
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+
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+ class Name778(Enum):
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+ p_norm = "p-norm"
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+
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+
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+ class PNorm(BaseModel):
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+ name: Literal["4#-datamodel-code-generator-#-object-#-special-#"]
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+ degree: Optional[int] = None
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+ """
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+ degree of the dimensionality of the norm
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+ """
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+ value: float
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+
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+
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+ class Name779(Enum):
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+ inchi = "inchi"
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+
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+
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+ class InChIRepresentationSchema(BaseModel):
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+ name: Literal["5#-datamodel-code-generator-#-object-#-special-#"]
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+ value: str
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+
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+
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+ class Name780(Enum):
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+ inchi_key = "inchi_key"
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+
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+
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+ class InChIKeyRepresentationSchema(BaseModel):
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+ name: Literal["6#-datamodel-code-generator-#-object-#-special-#"]
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+ value: str
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+
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+
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+ class DerivedPropertiesSchema(
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+ RootModel[
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+ Union[
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+ VolumeSchema,
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+ DensitySchema,
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+ SymmetrySchema,
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+ ElementalRatio,
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+ PNorm,
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+ InChIRepresentationSchema,
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+ InChIKeyRepresentationSchema,
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+ ]
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+ ]
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+ ):
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+ root: Union[
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+ VolumeSchema,
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+ DensitySchema,
391
+ SymmetrySchema,
392
+ ElementalRatio,
393
+ PNorm,
394
+ InChIRepresentationSchema,
395
+ InChIKeyRepresentationSchema,
396
+ ] = Field(..., discriminator="name")
397
+
398
+
399
+ class DatabaseSourceSchema(BaseModel):
400
+ id: Union[str, float]
401
+ """
402
+ ID string for the materials uploaded from a third party source inside the third party source. For materialsproject.org an example ID is mp-32
403
+ """
404
+ source: str
405
+ """
406
+ Third party source name, e.g. materials project, 2dmatpedia, ICSD, etc.
407
+ """
408
+ origin: bool
409
+ """
410
+ Deprecated. To be removed. A flag that is true when material is initially imported from a third party * (as opposed to being independently designed from scratch).
411
+ """
412
+ data: Optional[Dict[str, Any]] = None
413
+ """
414
+ Original response from external source.
415
+ """
416
+ doi: Optional[str] = None
417
+ """
418
+ Digital Object Identifier, e.g. 10.1088/0953-8984/25/10/105506
419
+ """
420
+ url: Optional[str] = None
421
+ """
422
+ The URL of the original record, e.g. https://next-gen.materialsproject.org/materials/mp-48; ToDo: update to use URI type per https://json-schema.org/understanding-json-schema/reference/string#resource-identifiers
423
+ """
424
+
425
+
426
+ class FileSourceSchema(BaseModel):
427
+ extension: Optional[str] = None
428
+ """
429
+ file extension
430
+ """
431
+ filename: str
432
+ """
433
+ file name without extension
434
+ """
435
+ text: str
436
+ """
437
+ file content as raw text
438
+ """
439
+ hash: str
440
+ """
441
+ MD5 hash based on file content
442
+ """
443
+
444
+
445
+ class Name781(Enum):
446
+ default = "default"
447
+ atomsTooClose = "atomsTooClose"
448
+ atomsOverlap = "atomsOverlap"
449
+
450
+
451
+ class Severity(Enum):
452
+ info = "info"
453
+ warning = "warning"
454
+ error = "error"
455
+
456
+
457
+ class MaterialConsistencyCheckSchema(BaseModel):
458
+ name: Name781
459
+ """
460
+ Name of the consistency check that is performed, which is listed in an enum.
461
+ """
462
+ key: str
463
+ """
464
+ Key of the property of the entity on which the consistency check is performed in Mongo dot notation, e.g. 'basis.coordinates.1'
465
+ """
466
+ severity: Severity
467
+ """
468
+ Severity level of the problem, which is used in UI to differentiate.
469
+ """
470
+ message: str
471
+ """
472
+ Message generated by the consistency check describing the problem.
473
+ """
474
+
475
+
476
+ class CrystalSchema(BaseModel):
477
+ formula: Optional[str] = None
478
+ """
479
+ reduced chemical formula
480
+ """
481
+ unitCellFormula: Optional[str] = None
482
+ """
483
+ chemical formula based on the number of atoms of each element in the supercell
484
+ """
485
+ basis: BasisSchema = Field(..., title="basis schema")
486
+ lattice: LatticeSchema = Field(..., title="lattice schema")
487
+ derivedProperties: Optional[List[DerivedPropertiesSchema]] = Field(None, title="derived properties schema")
488
+ external: Optional[DatabaseSourceSchema] = Field(None, title="database source schema")
489
+ """
490
+ information about a database source
491
+ """
492
+ src: Optional[FileSourceSchema] = Field(None, title="file source schema")
493
+ """
494
+ file source with the information inside
495
+ """
496
+ scaledHash: Optional[str] = None
497
+ """
498
+ Hash string for a scaled structure with lattice vector a set to 1 (eg. for materials under pressure).
499
+ """
500
+ icsdId: Optional[int] = None
501
+ """
502
+ Corresponding ICSD id of the material
503
+ """
504
+ isNonPeriodic: Optional[bool] = None
505
+ """
506
+ Whether to work in the finite molecular picture (usually with atomic orbital basis)
507
+ """
508
+ consistencyChecks: Optional[List[MaterialConsistencyCheckSchema]] = None
509
+ field_id: Optional[str] = Field(None, alias="_id")
510
+ """
511
+ entity identity
512
+ """
513
+ slug: Optional[str] = None
514
+ """
515
+ entity slug
516
+ """
517
+ systemName: Optional[str] = None
518
+ schemaVersion: Optional[str] = "2022.8.16"
519
+ """
520
+ entity's schema version. Used to distinct between different schemas.
521
+ """
522
+ name: Optional[str] = None
523
+ """
524
+ entity name
525
+ """
526
+ isDefault: Optional[bool] = False
527
+ """
528
+ Identifies that entity is defaultable
529
+ """
530
+ metadata: Optional[Dict[str, Any]] = None
531
+
532
+
533
+ class Value194(Enum):
534
+ H = "H"
535
+ He = "He"
536
+ Li = "Li"
537
+ Be = "Be"
538
+ B = "B"
539
+ C = "C"
540
+ N = "N"
541
+ O = "O"
542
+ F = "F"
543
+ Ne = "Ne"
544
+ Na = "Na"
545
+ Mg = "Mg"
546
+ Al = "Al"
547
+ Si = "Si"
548
+ P = "P"
549
+ S = "S"
550
+ Cl = "Cl"
551
+ Ar = "Ar"
552
+ K = "K"
553
+ Ca = "Ca"
554
+ Sc = "Sc"
555
+ Ti = "Ti"
556
+ V = "V"
557
+ Cr = "Cr"
558
+ Mn = "Mn"
559
+ Fe = "Fe"
560
+ Co = "Co"
561
+ Ni = "Ni"
562
+ Cu = "Cu"
563
+ Zn = "Zn"
564
+ Ga = "Ga"
565
+ Ge = "Ge"
566
+ As = "As"
567
+ Se = "Se"
568
+ Br = "Br"
569
+ Kr = "Kr"
570
+ Rb = "Rb"
571
+ Sr = "Sr"
572
+ Y = "Y"
573
+ Zr = "Zr"
574
+ Nb = "Nb"
575
+ Mo = "Mo"
576
+ Tc = "Tc"
577
+ Ru = "Ru"
578
+ Rh = "Rh"
579
+ Pd = "Pd"
580
+ Ag = "Ag"
581
+ Cd = "Cd"
582
+ In = "In"
583
+ Sn = "Sn"
584
+ Sb = "Sb"
585
+ Te = "Te"
586
+ I = "I"
587
+ Xe = "Xe"
588
+ Cs = "Cs"
589
+ Ba = "Ba"
590
+ La = "La"
591
+ Ce = "Ce"
592
+ Pr = "Pr"
593
+ Nd = "Nd"
594
+ Pm = "Pm"
595
+ Sm = "Sm"
596
+ Eu = "Eu"
597
+ Gd = "Gd"
598
+ Tb = "Tb"
599
+ Dy = "Dy"
600
+ Ho = "Ho"
601
+ Er = "Er"
602
+ Tm = "Tm"
603
+ Yb = "Yb"
604
+ Lu = "Lu"
605
+ Hf = "Hf"
606
+ Ta = "Ta"
607
+ W = "W"
608
+ Re = "Re"
609
+ Os = "Os"
610
+ Ir = "Ir"
611
+ Pt = "Pt"
612
+ Au = "Au"
613
+ Hg = "Hg"
614
+ Tl = "Tl"
615
+ Pb = "Pb"
616
+ Bi = "Bi"
617
+ Po = "Po"
618
+ At = "At"
619
+ Rn = "Rn"
620
+ Fr = "Fr"
621
+ Ra = "Ra"
622
+ Ac = "Ac"
623
+ Th = "Th"
624
+ Pa = "Pa"
625
+ U = "U"
626
+ Np = "Np"
627
+ Pu = "Pu"
628
+ Am = "Am"
629
+ Cm = "Cm"
630
+ Bk = "Bk"
631
+ Cf = "Cf"
632
+ Es = "Es"
633
+ Fm = "Fm"
634
+ Md = "Md"
635
+ No = "No"
636
+ Lr = "Lr"
637
+ Rf = "Rf"
638
+ Db = "Db"
639
+ Sg = "Sg"
640
+ Bh = "Bh"
641
+ Hs = "Hs"
642
+ Mt = "Mt"
643
+ Ds = "Ds"
644
+ Rg = "Rg"
645
+ Cn = "Cn"
646
+ Nh = "Nh"
647
+ Fl = "Fl"
648
+ Mc = "Mc"
649
+ Lv = "Lv"
650
+ Ts = "Ts"
651
+ Og = "Og"
652
+
653
+
654
+ class Value195(Enum):
655
+ X = "X"
656
+ Vac = "Vac"
657
+
658
+
659
+ class AtomicElementSchema93(BaseModel):
660
+ value: Union[Value194, Value195]
661
+ """
662
+ All elements, including extra elements
663
+ """
664
+ id: int
665
+ """
666
+ integer id of this entry
667
+ """
668
+
669
+
670
+ class BasisSchema91(BaseModel):
671
+ elements: List[AtomicElementSchema93] = Field(..., title="atomic elements schema")
672
+ """
673
+ atomic elements schema
674
+ """
675
+ coordinates: List[AtomicCoordinateSchema] = Field(..., title="atomic coordinates schema")
676
+ """
677
+ atomic coordinates schema
678
+ """
679
+ units: Optional[BasisUnitsEnum] = Field("crystal", title="basis units enum")
680
+ labels: Optional[List[AtomicLabelSchema]] = Field(None, title="atomic labels schema")
681
+ """
682
+ atomic labels schema
683
+ """
684
+
685
+
686
+ class LatticeVectorsSchema91(BaseModel):
687
+ a: List[float] = Field(..., max_length=3, min_length=3, title="vector 3d schema")
688
+ b: List[float] = Field(..., max_length=3, min_length=3, title="vector 3d schema")
689
+ c: List[float] = Field(..., max_length=3, min_length=3, title="vector 3d schema")
690
+ alat: Optional[float] = 1
691
+ """
692
+ lattice parameter for fractional coordinates
693
+ """
694
+ units: Optional[LatticeVectorsUnitsEnum] = Field("angstrom", title="lattice vectors units enum")
695
+
696
+
697
+ class LatticeUnitsSchema92(BaseModel):
698
+ length: Optional[LatticeUnitsLengthEnum] = Field("angstrom", title="lattice units length enum")
699
+ angle: Optional[LatticeUnitsAngleEnum] = Field("degree", title="lattice units angle enum")
700
+
701
+
702
+ class LatticeSchema91(BaseModel):
703
+ a: float
704
+ """
705
+ length of the first lattice vector
706
+ """
707
+ b: float
708
+ """
709
+ length of the second lattice vector
710
+ """
711
+ c: float
712
+ """
713
+ length of the third lattice vector
714
+ """
715
+ alpha: float
716
+ """
717
+ angle between first and second lattice vector
718
+ """
719
+ beta: float
720
+ """
721
+ angle between second and third lattice vector
722
+ """
723
+ gamma: float
724
+ """
725
+ angle between first and third lattice vector
726
+ """
727
+ vectors: Optional[LatticeVectorsSchema91] = Field(None, title="lattice vectors schema")
728
+ type: Optional[LatticeTypeEnum] = Field("TRI", title="lattice type enum")
729
+ units: Optional[LatticeUnitsSchema92] = Field(
730
+ default_factory=lambda: LatticeUnitsSchema92.model_validate({"length": "angstrom", "angle": "degree"}),
731
+ title="Lattice units schema",
732
+ )
733
+
734
+
735
+ class Name782(Enum):
736
+ volume = "volume"
737
+
738
+
739
+ class Units315(Enum):
740
+ angstrom_3 = "angstrom^3"
741
+
742
+
743
+ class VolumeSchema91(BaseModel):
744
+ name: Literal["0#-datamodel-code-generator-#-object-#-special-#"]
745
+ units: Optional[Units315] = None
746
+ value: float
747
+
748
+
749
+ class Name783(Enum):
750
+ density = "density"
751
+
752
+
753
+ class Units316(Enum):
754
+ g_cm_3 = "g/cm^3"
755
+
756
+
757
+ class DensitySchema92(BaseModel):
758
+ name: Literal["1#-datamodel-code-generator-#-object-#-special-#"]
759
+ units: Optional[Units316] = None
760
+ value: float
761
+
762
+
763
+ class Units317(Enum):
764
+ angstrom = "angstrom"
765
+
766
+
767
+ class ScalarSchema93(BaseModel):
768
+ units: Optional[Units317] = None
769
+ value: float
770
+
771
+
772
+ class Name784(Enum):
773
+ symmetry = "symmetry"
774
+
775
+
776
+ class SymmetrySchema91(BaseModel):
777
+ pointGroupSymbol: Optional[str] = None
778
+ """
779
+ point group symbol in Schoenflies notation
780
+ """
781
+ spaceGroupSymbol: Optional[str] = None
782
+ """
783
+ space group symbol in Hermann–Mauguin notation
784
+ """
785
+ tolerance: Optional[ScalarSchema93] = Field(None, title="scalar schema")
786
+ """
787
+ tolerance used for symmetry calculation
788
+ """
789
+ name: Literal["2#-datamodel-code-generator-#-object-#-special-#"]
790
+
791
+
792
+ class Name785(Enum):
793
+ elemental_ratio = "elemental_ratio"
794
+
795
+
796
+ class ElementalRatio92(BaseModel):
797
+ name: Literal["3#-datamodel-code-generator-#-object-#-special-#"]
798
+ value: confloat(ge=0.0, le=1.0)
799
+ element: Optional[str] = None
800
+ """
801
+ the element this ratio is for
802
+ """
803
+
804
+
805
+ class Name786(Enum):
806
+ p_norm = "p-norm"
807
+
808
+
809
+ class PNorm92(BaseModel):
810
+ name: Literal["4#-datamodel-code-generator-#-object-#-special-#"]
811
+ degree: Optional[int] = None
812
+ """
813
+ degree of the dimensionality of the norm
814
+ """
815
+ value: float
816
+
817
+
818
+ class Name787(Enum):
819
+ inchi = "inchi"
820
+
821
+
822
+ class InChIRepresentationSchema92(BaseModel):
823
+ name: Literal["5#-datamodel-code-generator-#-object-#-special-#"]
824
+ value: str
825
+
826
+
827
+ class Name788(Enum):
828
+ inchi_key = "inchi_key"
829
+
830
+
831
+ class InChIKeyRepresentationSchema92(BaseModel):
832
+ name: Literal["6#-datamodel-code-generator-#-object-#-special-#"]
833
+ value: str
834
+
835
+
836
+ class DerivedPropertiesSchema92(
837
+ RootModel[
838
+ Union[
839
+ VolumeSchema91,
840
+ DensitySchema92,
841
+ SymmetrySchema91,
842
+ ElementalRatio92,
843
+ PNorm92,
844
+ InChIRepresentationSchema92,
845
+ InChIKeyRepresentationSchema92,
846
+ ]
847
+ ]
848
+ ):
849
+ root: Union[
850
+ VolumeSchema91,
851
+ DensitySchema92,
852
+ SymmetrySchema91,
853
+ ElementalRatio92,
854
+ PNorm92,
855
+ InChIRepresentationSchema92,
856
+ InChIKeyRepresentationSchema92,
857
+ ] = Field(..., discriminator="name")
858
+
859
+
860
+ class Name789(Enum):
861
+ default = "default"
862
+ atomsTooClose = "atomsTooClose"
863
+ atomsOverlap = "atomsOverlap"
864
+
865
+
866
+ class MaterialConsistencyCheckSchema91(BaseModel):
867
+ name: Name789
868
+ """
869
+ Name of the consistency check that is performed, which is listed in an enum.
870
+ """
871
+ key: str
872
+ """
873
+ Key of the property of the entity on which the consistency check is performed in Mongo dot notation, e.g. 'basis.coordinates.1'
874
+ """
875
+ severity: Severity
876
+ """
877
+ Severity level of the problem, which is used in UI to differentiate.
878
+ """
879
+ message: str
880
+ """
881
+ Message generated by the consistency check describing the problem.
882
+ """
883
+
884
+
885
+ class CrystalSchema86(BaseModel):
886
+ formula: Optional[str] = None
887
+ """
888
+ reduced chemical formula
889
+ """
890
+ unitCellFormula: Optional[str] = None
891
+ """
892
+ chemical formula based on the number of atoms of each element in the supercell
893
+ """
894
+ basis: BasisSchema91 = Field(..., title="basis schema")
895
+ lattice: LatticeSchema91 = Field(..., title="lattice schema")
896
+ derivedProperties: Optional[List[DerivedPropertiesSchema92]] = Field(None, title="derived properties schema")
897
+ external: Optional[DatabaseSourceSchema] = Field(None, title="database source schema")
898
+ """
899
+ information about a database source
900
+ """
901
+ src: Optional[FileSourceSchema] = Field(None, title="file source schema")
902
+ """
903
+ file source with the information inside
904
+ """
905
+ scaledHash: Optional[str] = None
906
+ """
907
+ Hash string for a scaled structure with lattice vector a set to 1 (eg. for materials under pressure).
908
+ """
909
+ icsdId: Optional[int] = None
910
+ """
911
+ Corresponding ICSD id of the material
912
+ """
913
+ isNonPeriodic: Optional[bool] = None
914
+ """
915
+ Whether to work in the finite molecular picture (usually with atomic orbital basis)
916
+ """
917
+ consistencyChecks: Optional[List[MaterialConsistencyCheckSchema91]] = None
918
+ field_id: Optional[str] = Field(None, alias="_id")
919
+ """
920
+ entity identity
921
+ """
922
+ slug: Optional[str] = None
923
+ """
924
+ entity slug
925
+ """
926
+ systemName: Optional[str] = None
927
+ schemaVersion: Optional[str] = "2022.8.16"
928
+ """
929
+ entity's schema version. Used to distinct between different schemas.
930
+ """
931
+ name: Optional[str] = None
932
+ """
933
+ entity name
934
+ """
935
+ isDefault: Optional[bool] = False
936
+ """
937
+ Identifies that entity is defaultable
938
+ """
939
+ metadata: Optional[Dict[str, Any]] = None
940
+
941
+
942
+ class ChemicalElement(Enum):
943
+ H = "H"
944
+ He = "He"
945
+ Li = "Li"
946
+ Be = "Be"
947
+ B = "B"
948
+ C = "C"
949
+ N = "N"
950
+ O = "O"
951
+ F = "F"
952
+ Ne = "Ne"
953
+ Na = "Na"
954
+ Mg = "Mg"
955
+ Al = "Al"
956
+ Si = "Si"
957
+ P = "P"
958
+ S = "S"
959
+ Cl = "Cl"
960
+ Ar = "Ar"
961
+ K = "K"
962
+ Ca = "Ca"
963
+ Sc = "Sc"
964
+ Ti = "Ti"
965
+ V = "V"
966
+ Cr = "Cr"
967
+ Mn = "Mn"
968
+ Fe = "Fe"
969
+ Co = "Co"
970
+ Ni = "Ni"
971
+ Cu = "Cu"
972
+ Zn = "Zn"
973
+ Ga = "Ga"
974
+ Ge = "Ge"
975
+ As = "As"
976
+ Se = "Se"
977
+ Br = "Br"
978
+ Kr = "Kr"
979
+ Rb = "Rb"
980
+ Sr = "Sr"
981
+ Y = "Y"
982
+ Zr = "Zr"
983
+ Nb = "Nb"
984
+ Mo = "Mo"
985
+ Tc = "Tc"
986
+ Ru = "Ru"
987
+ Rh = "Rh"
988
+ Pd = "Pd"
989
+ Ag = "Ag"
990
+ Cd = "Cd"
991
+ In = "In"
992
+ Sn = "Sn"
993
+ Sb = "Sb"
994
+ Te = "Te"
995
+ I = "I"
996
+ Xe = "Xe"
997
+ Cs = "Cs"
998
+ Ba = "Ba"
999
+ La = "La"
1000
+ Ce = "Ce"
1001
+ Pr = "Pr"
1002
+ Nd = "Nd"
1003
+ Pm = "Pm"
1004
+ Sm = "Sm"
1005
+ Eu = "Eu"
1006
+ Gd = "Gd"
1007
+ Tb = "Tb"
1008
+ Dy = "Dy"
1009
+ Ho = "Ho"
1010
+ Er = "Er"
1011
+ Tm = "Tm"
1012
+ Yb = "Yb"
1013
+ Lu = "Lu"
1014
+ Hf = "Hf"
1015
+ Ta = "Ta"
1016
+ W = "W"
1017
+ Re = "Re"
1018
+ Os = "Os"
1019
+ Ir = "Ir"
1020
+ Pt = "Pt"
1021
+ Au = "Au"
1022
+ Hg = "Hg"
1023
+ Tl = "Tl"
1024
+ Pb = "Pb"
1025
+ Bi = "Bi"
1026
+ Po = "Po"
1027
+ At = "At"
1028
+ Rn = "Rn"
1029
+ Fr = "Fr"
1030
+ Ra = "Ra"
1031
+ Ac = "Ac"
1032
+ Th = "Th"
1033
+ Pa = "Pa"
1034
+ U = "U"
1035
+ Np = "Np"
1036
+ Pu = "Pu"
1037
+ Am = "Am"
1038
+ Cm = "Cm"
1039
+ Bk = "Bk"
1040
+ Cf = "Cf"
1041
+ Es = "Es"
1042
+ Fm = "Fm"
1043
+ Md = "Md"
1044
+ No = "No"
1045
+ Lr = "Lr"
1046
+ Rf = "Rf"
1047
+ Db = "Db"
1048
+ Sg = "Sg"
1049
+ Bh = "Bh"
1050
+ Hs = "Hs"
1051
+ Mt = "Mt"
1052
+ Ds = "Ds"
1053
+ Rg = "Rg"
1054
+ Cn = "Cn"
1055
+ Nh = "Nh"
1056
+ Fl = "Fl"
1057
+ Mc = "Mc"
1058
+ Lv = "Lv"
1059
+ Ts = "Ts"
1060
+ Og = "Og"
1061
+
1062
+
1063
+ class AtomSchema(BaseModel):
1064
+ chemical_element: ChemicalElement
1065
+
1066
+
1067
+ class ChemicalElement11(Enum):
1068
+ X = "X"
1069
+ Vac = "Vac"
1070
+
1071
+
1072
+ class VacancySchema(BaseModel):
1073
+ chemical_element: Optional[ChemicalElement11] = "Vac"
1074
+ """
1075
+ Extra elements, used for convenience purposed
1076
+ """
1077
+
1078
+
1079
+ class PointDefectSiteSchema(BaseModel):
1080
+ crystal: CrystalSchema86 = Field(..., title="Crystal Schema")
1081
+ """
1082
+ A crystal structure, referencing the base material schema
1083
+ """
1084
+ coordinate: List[float] = Field(..., max_length=3, min_length=3, title="coordinate 3d schema")
1085
+ element: Union[AtomSchema, VacancySchema]
1086
+
1087
+
1088
+ class MergeMethodsEnum(Enum):
1089
+ ADD = "ADD"
1090
+ REPLACE = "REPLACE"
1091
+ YIELD = "YIELD"
1092
+
1093
+
1094
+ class SubstitutionalPointDefectSchema(BaseModel):
1095
+ merge_components: List[Union[CrystalSchema, PointDefectSiteSchema]] = Field(..., max_length=2, min_length=2)
1096
+ merge_method: Optional[MergeMethodsEnum] = Field("REPLACE", title="Merge Methods Enum")
1097
+ """
1098
+ Available methods for merging components
1099
+ """