lamindb 1.4.0__py3-none-any.whl → 1.5.1__py3-none-any.whl

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Files changed (57) hide show
  1. lamindb/__init__.py +52 -36
  2. lamindb/_finish.py +17 -10
  3. lamindb/_tracked.py +1 -1
  4. lamindb/base/__init__.py +3 -1
  5. lamindb/base/fields.py +40 -22
  6. lamindb/base/ids.py +1 -94
  7. lamindb/base/types.py +2 -0
  8. lamindb/base/uids.py +117 -0
  9. lamindb/core/_context.py +203 -102
  10. lamindb/core/_settings.py +38 -25
  11. lamindb/core/datasets/__init__.py +11 -4
  12. lamindb/core/datasets/_core.py +5 -5
  13. lamindb/core/datasets/_small.py +0 -93
  14. lamindb/core/datasets/mini_immuno.py +172 -0
  15. lamindb/core/loaders.py +1 -1
  16. lamindb/core/storage/_backed_access.py +100 -6
  17. lamindb/core/storage/_polars_lazy_df.py +51 -0
  18. lamindb/core/storage/_pyarrow_dataset.py +15 -30
  19. lamindb/core/storage/_tiledbsoma.py +29 -13
  20. lamindb/core/storage/objects.py +6 -0
  21. lamindb/core/subsettings/__init__.py +2 -0
  22. lamindb/core/subsettings/_annotation_settings.py +11 -0
  23. lamindb/curators/__init__.py +7 -3349
  24. lamindb/curators/_legacy.py +2056 -0
  25. lamindb/curators/core.py +1534 -0
  26. lamindb/errors.py +11 -0
  27. lamindb/examples/__init__.py +27 -0
  28. lamindb/examples/schemas/__init__.py +12 -0
  29. lamindb/examples/schemas/_anndata.py +25 -0
  30. lamindb/examples/schemas/_simple.py +19 -0
  31. lamindb/integrations/_vitessce.py +8 -5
  32. lamindb/migrations/0091_alter_featurevalue_options_alter_space_options_and_more.py +24 -0
  33. lamindb/migrations/0092_alter_artifactfeaturevalue_artifact_and_more.py +75 -0
  34. lamindb/migrations/0093_alter_schemacomponent_unique_together.py +16 -0
  35. lamindb/models/__init__.py +4 -1
  36. lamindb/models/_describe.py +21 -4
  37. lamindb/models/_feature_manager.py +382 -287
  38. lamindb/models/_label_manager.py +8 -2
  39. lamindb/models/artifact.py +177 -106
  40. lamindb/models/artifact_set.py +122 -0
  41. lamindb/models/collection.py +73 -52
  42. lamindb/models/core.py +1 -1
  43. lamindb/models/feature.py +51 -17
  44. lamindb/models/has_parents.py +69 -14
  45. lamindb/models/project.py +1 -1
  46. lamindb/models/query_manager.py +221 -22
  47. lamindb/models/query_set.py +247 -172
  48. lamindb/models/record.py +65 -247
  49. lamindb/models/run.py +4 -4
  50. lamindb/models/save.py +8 -2
  51. lamindb/models/schema.py +456 -184
  52. lamindb/models/transform.py +2 -2
  53. lamindb/models/ulabel.py +8 -5
  54. {lamindb-1.4.0.dist-info → lamindb-1.5.1.dist-info}/METADATA +6 -6
  55. {lamindb-1.4.0.dist-info → lamindb-1.5.1.dist-info}/RECORD +57 -43
  56. {lamindb-1.4.0.dist-info → lamindb-1.5.1.dist-info}/LICENSE +0 -0
  57. {lamindb-1.4.0.dist-info → lamindb-1.5.1.dist-info}/WHEEL +0 -0
lamindb/core/subsettings/_annotation_settings.py ADDED
@@ -0,0 +1,11 @@
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+ class AnnotationSettings:
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+ n_max_records: int = 1000
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+ """Maximal number of records to annotate with during automated annotation.
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+
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+ If the number of records to annotate exceeds this limit, print a warning and do not annotate.
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+
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+ The number is calculated per feature for labels, and per schema for features.
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+ """
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+
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+
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+ annotation_settings = AnnotationSettings()