junifer 0.0.7.dev18__py3-none-any.whl → 0.0.7.dev47__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (91) hide show
  1. junifer/_version.py +2 -2
  2. junifer/api/decorators.py +0 -1
  3. junifer/api/functions.py +1 -2
  4. junifer/api/queue_context/gnu_parallel_local_adapter.py +4 -7
  5. junifer/api/queue_context/htcondor_adapter.py +6 -10
  6. junifer/cli/tests/test_parser.py +66 -0
  7. junifer/data/_dispatch.py +5 -5
  8. junifer/data/coordinates/_ants_coordinates_warper.py +1 -1
  9. junifer/data/coordinates/_coordinates.py +1 -1
  10. junifer/data/coordinates/_fsl_coordinates_warper.py +1 -1
  11. junifer/data/coordinates/tests/test_coordinates.py +38 -16
  12. junifer/data/masks/_ants_mask_warper.py +1 -1
  13. junifer/data/masks/_fsl_mask_warper.py +1 -1
  14. junifer/data/masks/tests/test_masks.py +66 -33
  15. junifer/data/parcellations/_ants_parcellation_warper.py +1 -1
  16. junifer/data/parcellations/_fsl_parcellation_warper.py +1 -1
  17. junifer/data/parcellations/_parcellations.py +7 -7
  18. junifer/data/parcellations/tests/test_parcellations.py +162 -76
  19. junifer/data/tests/test_data_utils.py +0 -1
  20. junifer/data/utils.py +1 -1
  21. junifer/datagrabber/aomic/id1000.py +6 -0
  22. junifer/datagrabber/aomic/piop1.py +4 -3
  23. junifer/datagrabber/aomic/piop2.py +4 -3
  24. junifer/datagrabber/pattern_datalad.py +0 -1
  25. junifer/datagrabber/pattern_validation_mixin.py +0 -1
  26. junifer/datagrabber/tests/test_dmcc13_benchmark.py +4 -8
  27. junifer/markers/base.py +3 -3
  28. junifer/markers/brainprint.py +5 -5
  29. junifer/markers/complexity/multiscale_entropy_auc.py +3 -3
  30. junifer/markers/complexity/range_entropy.py +3 -3
  31. junifer/markers/complexity/sample_entropy.py +3 -3
  32. junifer/markers/falff/falff_parcels.py +2 -6
  33. junifer/markers/falff/falff_spheres.py +2 -6
  34. junifer/markers/functional_connectivity/functional_connectivity_base.py +0 -1
  35. junifer/markers/functional_connectivity/tests/test_functional_connectivity_parcels.py +2 -1
  36. junifer/markers/functional_connectivity/tests/test_functional_connectivity_spheres.py +2 -1
  37. junifer/markers/reho/_afni_reho.py +1 -1
  38. junifer/markers/reho/reho_base.py +0 -1
  39. junifer/markers/reho/reho_parcels.py +0 -1
  40. junifer/markers/reho/reho_spheres.py +0 -1
  41. junifer/markers/temporal_snr/temporal_snr_base.py +0 -1
  42. junifer/markers/tests/test_markers_base.py +0 -1
  43. junifer/onthefly/_brainprint.py +3 -3
  44. junifer/onthefly/read_transform.py +1 -2
  45. junifer/onthefly/tests/test_read_transform.py +0 -1
  46. junifer/pipeline/tests/test_marker_collection.py +2 -1
  47. junifer/pipeline/workdir_manager.py +1 -2
  48. junifer/preprocess/confounds/fmriprep_confound_remover.py +1 -1
  49. junifer/preprocess/confounds/tests/test_fmriprep_confound_remover.py +0 -1
  50. junifer/preprocess/smoothing/tests/test_smoothing.py +0 -1
  51. junifer/preprocess/warping/_ants_warper.py +2 -3
  52. junifer/preprocess/warping/_fsl_warper.py +1 -1
  53. junifer/preprocess/warping/space_warper.py +4 -2
  54. junifer/storage/hdf5.py +14 -2
  55. junifer/storage/pandas_base.py +3 -1
  56. junifer/storage/sqlite.py +3 -8
  57. junifer/storage/tests/test_hdf5.py +1 -0
  58. junifer/storage/tests/test_pandas_base.py +6 -3
  59. junifer/storage/tests/test_storage_base.py +2 -1
  60. junifer/utils/logging.py +38 -128
  61. junifer/utils/tests/test_logging.py +12 -4
  62. {junifer-0.0.7.dev18.dist-info → junifer-0.0.7.dev47.dist-info}/METADATA +3 -2
  63. {junifer-0.0.7.dev18.dist-info → junifer-0.0.7.dev47.dist-info}/RECORD +68 -91
  64. {junifer-0.0.7.dev18.dist-info → junifer-0.0.7.dev47.dist-info}/WHEEL +1 -1
  65. junifer/data/coordinates/VOIs/meta/AutobiographicalMemory_VOIs.txt +0 -23
  66. junifer/data/coordinates/VOIs/meta/CogAC_VOIs.txt +0 -19
  67. junifer/data/coordinates/VOIs/meta/CogAR_VOIs.txt +0 -8
  68. junifer/data/coordinates/VOIs/meta/DMNBuckner_VOIs.txt +0 -6
  69. junifer/data/coordinates/VOIs/meta/Dosenbach2010_MNI_VOIs.txt +0 -160
  70. junifer/data/coordinates/VOIs/meta/Empathy_VOIs.txt +0 -22
  71. junifer/data/coordinates/VOIs/meta/Motor_VOIs.txt +0 -10
  72. junifer/data/coordinates/VOIs/meta/MultiTask_VOIs.txt +0 -9
  73. junifer/data/coordinates/VOIs/meta/PhysioStress_VOIs.txt +0 -18
  74. junifer/data/coordinates/VOIs/meta/Power2011_MNI_VOIs.txt +0 -264
  75. junifer/data/coordinates/VOIs/meta/Power2013_MNI_VOIs.tsv +0 -264
  76. junifer/data/coordinates/VOIs/meta/Rew_VOIs.txt +0 -25
  77. junifer/data/coordinates/VOIs/meta/Somatosensory_VOIs.txt +0 -10
  78. junifer/data/coordinates/VOIs/meta/ToM_VOIs.txt +0 -15
  79. junifer/data/coordinates/VOIs/meta/VigAtt_VOIs.txt +0 -16
  80. junifer/data/coordinates/VOIs/meta/WM_VOIs.txt +0 -23
  81. junifer/data/coordinates/VOIs/meta/eMDN_VOIs.txt +0 -17
  82. junifer/data/coordinates/VOIs/meta/eSAD_VOIs.txt +0 -12
  83. junifer/data/coordinates/VOIs/meta/extDMN_VOIs.txt +0 -16
  84. junifer/data/masks/ukb/UKB_15K_GM_template.nii.gz +0 -0
  85. junifer/data/masks/vickery-patil/CAT12_IXI555_MNI152_TMP_GS_GMprob0.2_clean.nii.gz +0 -0
  86. junifer/data/masks/vickery-patil/CAT12_IXI555_MNI152_TMP_GS_GMprob0.2_clean_3mm.nii.gz +0 -0
  87. junifer/data/masks/vickery-patil/GMprob0.2_cortex_3mm_NA_rm.nii.gz +0 -0
  88. {junifer-0.0.7.dev18.dist-info → junifer-0.0.7.dev47.dist-info}/entry_points.txt +0 -0
  89. {junifer-0.0.7.dev18.dist-info → junifer-0.0.7.dev47.dist-info}/licenses/AUTHORS.rst +0 -0
  90. {junifer-0.0.7.dev18.dist-info → junifer-0.0.7.dev47.dist-info}/licenses/LICENSE.md +0 -0
  91. {junifer-0.0.7.dev18.dist-info → junifer-0.0.7.dev47.dist-info}/top_level.txt +0 -0
junifer/data/coordinates/VOIs/meta/Power2013_MNI_VOIs.tsv DELETED
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junifer/data/coordinates/VOIs/meta/Rew_VOIs.txt DELETED
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1
- 12.0 10.0 -6.0 rNAc
2
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3
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4
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5
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6
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11
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junifer/data/coordinates/VOIs/meta/Somatosensory_VOIs.txt DELETED
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junifer/data/coordinates/VOIs/meta/ToM_VOIs.txt DELETED
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junifer/data/coordinates/VOIs/meta/eSAD_VOIs.txt DELETED
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- 0.0 38.0 10.0 ACC
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- -2.0 -52.0 26.0 PrC
5
- -2.0 32.0 -8.0 SGC
6
- -46.0 -66.0 18.0 TPJ_L
7
- 50.0 -60.0 18.0 TPJ_R
8
- -2.0 52.0 14.0 dmPFC
9
- -6.0 10.0 -8.0 vBG_L
10
- 6.0 10.0 -8.0 vBG_R
11
- -2.0 50.0 -10.0 vmPFC
12
- -54.0 -10.0 -20.0 aMTS/aMTG
junifer/data/coordinates/VOIs/meta/extDMN_VOIs.txt DELETED
@@ -1,16 +0,0 @@
1
- 0 -53 6 PCC
2
- 0 52 -6 MPFC
3
- -48 -62 36 lAG
4
- 46 -62 32 rAG
5
- -24 -22 -20 lHF
6
- 24 -22 -20 rHF
7
- 10 -22 42 Middlecingulate
8
- -48 -20 38 lIPG
9
- 0 -48 -30 cerebellum
10
- 34 -80 -34 rCerebellum
11
- 56 30 8 rdlPFC
12
- -42 -82 10 lateraloccipital
13
- -54 24 10 rdrPFC
14
- 22 34 54 RSFG
15
- -50 14 -40 lTempP
16
- -38 14 54 leftmiddlefrontalgyrus(BA6)