junifer 0.0.7.dev18__py3-none-any.whl → 0.0.7.dev47__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (91) hide show
  1. junifer/_version.py +2 -2
  2. junifer/api/decorators.py +0 -1
  3. junifer/api/functions.py +1 -2
  4. junifer/api/queue_context/gnu_parallel_local_adapter.py +4 -7
  5. junifer/api/queue_context/htcondor_adapter.py +6 -10
  6. junifer/cli/tests/test_parser.py +66 -0
  7. junifer/data/_dispatch.py +5 -5
  8. junifer/data/coordinates/_ants_coordinates_warper.py +1 -1
  9. junifer/data/coordinates/_coordinates.py +1 -1
  10. junifer/data/coordinates/_fsl_coordinates_warper.py +1 -1
  11. junifer/data/coordinates/tests/test_coordinates.py +38 -16
  12. junifer/data/masks/_ants_mask_warper.py +1 -1
  13. junifer/data/masks/_fsl_mask_warper.py +1 -1
  14. junifer/data/masks/tests/test_masks.py +66 -33
  15. junifer/data/parcellations/_ants_parcellation_warper.py +1 -1
  16. junifer/data/parcellations/_fsl_parcellation_warper.py +1 -1
  17. junifer/data/parcellations/_parcellations.py +7 -7
  18. junifer/data/parcellations/tests/test_parcellations.py +162 -76
  19. junifer/data/tests/test_data_utils.py +0 -1
  20. junifer/data/utils.py +1 -1
  21. junifer/datagrabber/aomic/id1000.py +6 -0
  22. junifer/datagrabber/aomic/piop1.py +4 -3
  23. junifer/datagrabber/aomic/piop2.py +4 -3
  24. junifer/datagrabber/pattern_datalad.py +0 -1
  25. junifer/datagrabber/pattern_validation_mixin.py +0 -1
  26. junifer/datagrabber/tests/test_dmcc13_benchmark.py +4 -8
  27. junifer/markers/base.py +3 -3
  28. junifer/markers/brainprint.py +5 -5
  29. junifer/markers/complexity/multiscale_entropy_auc.py +3 -3
  30. junifer/markers/complexity/range_entropy.py +3 -3
  31. junifer/markers/complexity/sample_entropy.py +3 -3
  32. junifer/markers/falff/falff_parcels.py +2 -6
  33. junifer/markers/falff/falff_spheres.py +2 -6
  34. junifer/markers/functional_connectivity/functional_connectivity_base.py +0 -1
  35. junifer/markers/functional_connectivity/tests/test_functional_connectivity_parcels.py +2 -1
  36. junifer/markers/functional_connectivity/tests/test_functional_connectivity_spheres.py +2 -1
  37. junifer/markers/reho/_afni_reho.py +1 -1
  38. junifer/markers/reho/reho_base.py +0 -1
  39. junifer/markers/reho/reho_parcels.py +0 -1
  40. junifer/markers/reho/reho_spheres.py +0 -1
  41. junifer/markers/temporal_snr/temporal_snr_base.py +0 -1
  42. junifer/markers/tests/test_markers_base.py +0 -1
  43. junifer/onthefly/_brainprint.py +3 -3
  44. junifer/onthefly/read_transform.py +1 -2
  45. junifer/onthefly/tests/test_read_transform.py +0 -1
  46. junifer/pipeline/tests/test_marker_collection.py +2 -1
  47. junifer/pipeline/workdir_manager.py +1 -2
  48. junifer/preprocess/confounds/fmriprep_confound_remover.py +1 -1
  49. junifer/preprocess/confounds/tests/test_fmriprep_confound_remover.py +0 -1
  50. junifer/preprocess/smoothing/tests/test_smoothing.py +0 -1
  51. junifer/preprocess/warping/_ants_warper.py +2 -3
  52. junifer/preprocess/warping/_fsl_warper.py +1 -1
  53. junifer/preprocess/warping/space_warper.py +4 -2
  54. junifer/storage/hdf5.py +14 -2
  55. junifer/storage/pandas_base.py +3 -1
  56. junifer/storage/sqlite.py +3 -8
  57. junifer/storage/tests/test_hdf5.py +1 -0
  58. junifer/storage/tests/test_pandas_base.py +6 -3
  59. junifer/storage/tests/test_storage_base.py +2 -1
  60. junifer/utils/logging.py +38 -128
  61. junifer/utils/tests/test_logging.py +12 -4
  62. {junifer-0.0.7.dev18.dist-info → junifer-0.0.7.dev47.dist-info}/METADATA +3 -2
  63. {junifer-0.0.7.dev18.dist-info → junifer-0.0.7.dev47.dist-info}/RECORD +68 -91
  64. {junifer-0.0.7.dev18.dist-info → junifer-0.0.7.dev47.dist-info}/WHEEL +1 -1
  65. junifer/data/coordinates/VOIs/meta/AutobiographicalMemory_VOIs.txt +0 -23
  66. junifer/data/coordinates/VOIs/meta/CogAC_VOIs.txt +0 -19
  67. junifer/data/coordinates/VOIs/meta/CogAR_VOIs.txt +0 -8
  68. junifer/data/coordinates/VOIs/meta/DMNBuckner_VOIs.txt +0 -6
  69. junifer/data/coordinates/VOIs/meta/Dosenbach2010_MNI_VOIs.txt +0 -160
  70. junifer/data/coordinates/VOIs/meta/Empathy_VOIs.txt +0 -22
  71. junifer/data/coordinates/VOIs/meta/Motor_VOIs.txt +0 -10
  72. junifer/data/coordinates/VOIs/meta/MultiTask_VOIs.txt +0 -9
  73. junifer/data/coordinates/VOIs/meta/PhysioStress_VOIs.txt +0 -18
  74. junifer/data/coordinates/VOIs/meta/Power2011_MNI_VOIs.txt +0 -264
  75. junifer/data/coordinates/VOIs/meta/Power2013_MNI_VOIs.tsv +0 -264
  76. junifer/data/coordinates/VOIs/meta/Rew_VOIs.txt +0 -25
  77. junifer/data/coordinates/VOIs/meta/Somatosensory_VOIs.txt +0 -10
  78. junifer/data/coordinates/VOIs/meta/ToM_VOIs.txt +0 -15
  79. junifer/data/coordinates/VOIs/meta/VigAtt_VOIs.txt +0 -16
  80. junifer/data/coordinates/VOIs/meta/WM_VOIs.txt +0 -23
  81. junifer/data/coordinates/VOIs/meta/eMDN_VOIs.txt +0 -17
  82. junifer/data/coordinates/VOIs/meta/eSAD_VOIs.txt +0 -12
  83. junifer/data/coordinates/VOIs/meta/extDMN_VOIs.txt +0 -16
  84. junifer/data/masks/ukb/UKB_15K_GM_template.nii.gz +0 -0
  85. junifer/data/masks/vickery-patil/CAT12_IXI555_MNI152_TMP_GS_GMprob0.2_clean.nii.gz +0 -0
  86. junifer/data/masks/vickery-patil/CAT12_IXI555_MNI152_TMP_GS_GMprob0.2_clean_3mm.nii.gz +0 -0
  87. junifer/data/masks/vickery-patil/GMprob0.2_cortex_3mm_NA_rm.nii.gz +0 -0
  88. {junifer-0.0.7.dev18.dist-info → junifer-0.0.7.dev47.dist-info}/entry_points.txt +0 -0
  89. {junifer-0.0.7.dev18.dist-info → junifer-0.0.7.dev47.dist-info}/licenses/AUTHORS.rst +0 -0
  90. {junifer-0.0.7.dev18.dist-info → junifer-0.0.7.dev47.dist-info}/licenses/LICENSE.md +0 -0
  91. {junifer-0.0.7.dev18.dist-info → junifer-0.0.7.dev47.dist-info}/top_level.txt +0 -0
junifer/utils/logging.py CHANGED
@@ -8,15 +8,14 @@ import os
8
8
  import sys
9
9
 
10
10
 
11
- if sys.version_info < (3, 12):
11
+ if sys.version_info < (3, 12): # pragma: no cover
12
12
  from distutils.version import LooseVersion
13
- else: # pragma: no cover
13
+ else:
14
14
  from looseversion import LooseVersion
15
15
 
16
16
  import logging
17
17
  import warnings
18
18
  from pathlib import Path
19
- from subprocess import PIPE, Popen, TimeoutExpired
20
19
  from typing import ClassVar, NoReturn, Optional, Union
21
20
  from warnings import warn
22
21
 
@@ -77,7 +76,7 @@ class WrapStdOut(logging.StreamHandler):
77
76
  # just stdout) in order for this to work (tested on OSX and Linux)
78
77
  if hasattr(sys.stdout, name):
79
78
  return getattr(sys.stdout, name)
80
- else:
79
+ else: # pragma: no cover
81
80
  raise AttributeError(f"'file' object has not attribute '{name}'")
82
81
 
83
82
 
@@ -107,11 +106,13 @@ class ColorFormatter(logging.Formatter):
107
106
  COLOR_SEQ: str = "\033[1;%dm"
108
107
  BOLD_SEQ: str = "\033[1m"
109
108
 
110
- def __init__(self, fmt: str, datefmt: Optional[str] = None) -> None:
109
+ def __init__(
110
+ self, fmt: str, datefmt: Optional[str] = None
111
+ ) -> None: # pragma: no cover
111
112
  """Initialize the ColorFormatter."""
112
113
  logging.Formatter.__init__(self, fmt, datefmt)
113
114
 
114
- def format(self, record: logging.LogRecord) -> str:
115
+ def format(self, record: logging.LogRecord) -> str: # pragma: no cover
115
116
  """Format the log record.
116
117
 
117
118
  Parameters
@@ -134,45 +135,6 @@ class ColorFormatter(logging.Formatter):
134
135
  return logging.Formatter.format(self, record)
135
136
 
136
137
 
137
- def _get_git_head(path: Path) -> str:
138
- """Aux function to read HEAD from git.
139
-
140
- Parameters
141
- ----------
142
- path : pathlib.Path
143
- The path to read git HEAD from.
144
-
145
- Returns
146
- -------
147
- str
148
- Empty string if timeout expired for subprocess command execution else
149
- git HEAD information.
150
-
151
- Raises
152
- ------
153
- FileNotFoundError
154
- If ``path`` is invalid.
155
-
156
- """
157
- if not path.exists():
158
- raise_error(
159
- msg=f"This path does not exist: {path}", klass=FileNotFoundError
160
- )
161
- command = f"cd {path}; git rev-parse --verify HEAD"
162
- process = Popen(
163
- args=command,
164
- stdout=PIPE,
165
- shell=True,
166
- )
167
- try:
168
- stdout, _ = process.communicate(timeout=10)
169
- proc_stdout = stdout.strip().decode()
170
- except TimeoutExpired:
171
- process.kill()
172
- proc_stdout = ""
173
- return proc_stdout
174
-
175
-
176
138
  def get_versions() -> dict:
177
139
  """Import stuff and get versions if module.
178
140
 
@@ -182,52 +144,22 @@ def get_versions() -> dict:
182
144
  The module names and corresponding versions.
183
145
 
184
146
  """
147
+ # Setup dictionary to track versions of modules
185
148
  module_versions = {}
186
149
  for name, module in sys.modules.copy().items():
187
150
  # Bypassing sub-modules of packages and
188
151
  # allowing ruamel.yaml
189
152
  if "." in name and name != "ruamel.yaml":
190
153
  continue
191
- if name in ["_curses"]:
192
- continue
154
+ # Get version or None as string
193
155
  vstring = str(getattr(module, "__version__", None))
194
- module_version = LooseVersion(vstring)
195
- module_version = getattr(module_version, "vstring", None)
196
- if module_version is None:
197
- module_version = None
198
- elif "git" in module_version:
199
- git_path = Path(module.__file__).resolve().parent # type: ignore
200
- head = _get_git_head(git_path)
201
- module_version += f"-HEAD:{head}"
202
-
156
+ # Get module version
157
+ module_version = getattr(LooseVersion(vstring), "vstring", None)
203
158
  module_versions[name] = module_version
204
159
  return module_versions
205
160
 
206
161
 
207
- # def get_ext_versions(tbox_path: Path) -> Dict:
208
- # """Get versions of external tools used by junifer.
209
-
210
- # Parameters
211
- # ----------
212
- # tbox_path : pathlib.Path
213
- # The path to external toolboxes.
214
-
215
- # Returns
216
- # -------
217
- # dict
218
- # The dependency information.
219
-
220
- # """
221
- # versions = {}
222
- # # spm_path = tbox_path / 'spm12'
223
- # # if spm_path.exists():
224
- # # head = _get_git_head(spm_path)
225
- # # module_version = 'SPM12-HEAD:{}'.format(head)
226
- # # versions['spm'] = module_version
227
- # return versions
228
-
229
-
230
- def _close_handlers(logger: logging.Logger) -> None:
162
+ def _close_handlers(logger: logging.Logger) -> None: # pragma: no cover
231
163
  """Safely close relevant handlers for logger.
232
164
 
233
165
  Parameters
@@ -243,55 +175,37 @@ def _close_handlers(logger: logging.Logger) -> None:
243
175
  logger.removeHandler(handler)
244
176
 
245
177
 
246
- def _safe_log(versions: dict, name: str) -> None:
247
- """Log with safety.
248
-
249
- Parameters
250
- ----------
251
- versions : dict
252
- The dictionary with keys as dependency names and values as the
253
- versions.
254
- name : str
255
- The dependency to look up in `versions`.
256
-
257
- """
258
- if name in versions:
259
- logger.info(f"{name}: {versions[name]}")
260
-
261
-
262
- def log_versions(tbox_path: Optional[Path] = None) -> None:
263
- """Log versions of dependencies and junifer.
264
-
265
- If `tbox_path` is specified, can also log versions of external toolboxes.
266
-
267
- Parameters
268
- ----------
269
- tbox_path : pathlib.Path, optional
270
- The path to external toolboxes (default None).
271
-
272
- """
178
+ def log_versions() -> None:
179
+ """Log versions of dependencies and junifer."""
273
180
  # Get versions of all found packages
274
181
  versions = get_versions()
275
-
182
+ # Set packages to log
183
+ pkgs_to_log = [
184
+ "click",
185
+ "numpy",
186
+ "scipy",
187
+ "datalad",
188
+ "pandas",
189
+ "nibabel",
190
+ "nilearn",
191
+ "sqlalchemy",
192
+ "ruamel.yaml",
193
+ "h5py",
194
+ "tqdm",
195
+ "templateflow",
196
+ "lapy",
197
+ "junifer_data",
198
+ "junifer",
199
+ ]
200
+ # Log
276
201
  logger.info("===== Lib Versions =====")
277
- _safe_log(versions, "numpy")
278
- _safe_log(versions, "scipy")
279
- _safe_log(versions, "pandas")
280
- _safe_log(versions, "nipype")
281
- _safe_log(versions, "nitime")
282
- _safe_log(versions, "nilearn")
283
- _safe_log(versions, "nibabel")
284
- _safe_log(versions, "junifer")
202
+ for pkg in pkgs_to_log:
203
+ if pkg in versions:
204
+ logger.info(f"{pkg}: {versions[pkg]}")
285
205
  logger.info("========================")
286
206
 
287
- if tbox_path is not None:
288
- # ext_versions = get_ext_versions(tbox_path)
289
- # logger.info('spm: {}'.format(ext_versions['spm']))
290
- # logger.info('========================')
291
- pass
292
-
293
207
 
294
- def _can_use_color(handler: logging.Handler) -> bool:
208
+ def _can_use_color(handler: logging.Handler) -> bool: # pragma: no cover
295
209
  """Check if color can be used in the logging output.
296
210
 
297
211
  Parameters
@@ -391,11 +305,7 @@ def configure_logging(
391
305
  # Set logging format
392
306
  if output_format is None:
393
307
  output_format = "%(asctime)s - %(name)s - %(levelname)s - %(message)s"
394
- # (
395
- # "%(asctime)s [%(levelname)s] %(message)s "
396
- # "(%(filename)s:%(lineno)s)"
397
- # )
398
- if _can_use_color(lh):
308
+ if _can_use_color(lh): # pragma: no cover
399
309
  formatter = ColorFormatter(fmt=output_format)
400
310
  else:
401
311
  formatter = logging.Formatter(fmt=output_format)
@@ -68,7 +68,9 @@ def test_log_file(tmp_path: Path) -> None:
68
68
  assert any("Warn message" in line for line in lines)
69
69
  assert any("Error message" in line for line in lines)
70
70
 
71
- configure_logging(fname=tmp_path / "test2.log", level="INFO")
71
+ configure_logging(
72
+ fname=str((tmp_path / "test2.log").resolve()), level="INFO"
73
+ )
72
74
  logger.debug("Debug message")
73
75
  logger.info("Info message")
74
76
  logger.warning("Warn message")
@@ -81,7 +83,9 @@ def test_log_file(tmp_path: Path) -> None:
81
83
  assert any("Warn message" in line for line in lines)
82
84
  assert any("Error message" in line for line in lines)
83
85
 
84
- configure_logging(fname=tmp_path / "test3.log", level="WARNING")
86
+ configure_logging(
87
+ fname=tmp_path / "test3.log", level="WARNING", level_datalad="WARNING"
88
+ )
85
89
  logger.debug("Debug message")
86
90
  logger.info("Info message")
87
91
  logger.warning("Warn message")
@@ -94,7 +98,7 @@ def test_log_file(tmp_path: Path) -> None:
94
98
  assert any("Warn message" in line for line in lines)
95
99
  assert any("Error message" in line for line in lines)
96
100
 
97
- configure_logging(fname=tmp_path / "test4.log", level="ERROR")
101
+ configure_logging(fname=tmp_path / "test4.log", level=logging.ERROR)
98
102
  logger.debug("Debug message")
99
103
  logger.info("Info message")
100
104
  logger.warning("Warn message")
@@ -107,7 +111,11 @@ def test_log_file(tmp_path: Path) -> None:
107
111
  assert any("Error message" in line for line in lines)
108
112
 
109
113
  with pytest.warns(UserWarning, match="to avoid this message"):
110
- configure_logging(fname=tmp_path / "test4.log", level="WARNING")
114
+ configure_logging(
115
+ fname=tmp_path / "test4.log",
116
+ level="WARNING",
117
+ level_datalad=logging.WARNING,
118
+ )
111
119
  logger.debug("Debug2 message")
112
120
  logger.info("Info2 message")
113
121
  logger.warning("Warn2 message")
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: junifer
3
- Version: 0.0.7.dev18
3
+ Version: 0.0.7.dev47
4
4
  Summary: JUelich NeuroImaging FEature extractoR
5
5
  Author-email: Fede Raimondo <f.raimondo@fz-juelich.de>, Synchon Mandal <s.mandal@fz-juelich.de>
6
6
  Maintainer-email: Fede Raimondo <f.raimondo@fz-juelich.de>, Synchon Mandal <s.mandal@fz-juelich.de>
@@ -57,6 +57,8 @@ Requires-Dist: neurokit2>=0.1.7; extra == "neurokit2"
57
57
  Provides-Extra: dev
58
58
  Requires-Dist: tox; extra == "dev"
59
59
  Requires-Dist: pre-commit; extra == "dev"
60
+ Requires-Dist: ruff; extra == "dev"
61
+ Requires-Dist: towncrier; extra == "dev"
60
62
  Provides-Extra: docs
61
63
  Requires-Dist: seaborn<0.14.0,>=0.13.0; extra == "docs"
62
64
  Requires-Dist: sphinx<8.1.0,>=7.3.0; extra == "docs"
@@ -81,7 +83,6 @@ Dynamic: license-file
81
83
  [![Anaconda-Server Badge](https://anaconda.org/conda-forge/junifer/badges/version.svg)](https://anaconda.org/conda-forge/junifer)
82
84
  ![GitHub](https://img.shields.io/github/license/juaml/junifer?style=flat-square)
83
85
  ![Codecov](https://img.shields.io/codecov/c/github/juaml/junifer?style=flat-square)
84
- [![Code style: black](https://img.shields.io/badge/code%20style-black-000000.svg?style=flat-square)](https://github.com/psf/black)
85
86
  [![Ruff](https://img.shields.io/endpoint?url=https://raw.githubusercontent.com/charliermarsh/ruff/main/assets/badge/v2.json)](https://github.com/charliermarsh/ruff)
86
87
  [![pre-commit](https://img.shields.io/badge/pre--commit-enabled-brightgreen?logo=pre-commit)](https://github.com/pre-commit/pre-commit)
87
88
  [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.8176570.svg)](https://doi.org/10.5281/zenodo.8176570)
@@ -1,18 +1,18 @@
1
1
  junifer/__init__.py,sha256=2McgH1yNue6Z1V26-uN_mfMjbTcx4CLhym-DMBl5xA4,266
2
2
  junifer/__init__.pyi,sha256=SsTvgq2Dod6UqJN96GH1lCphH6hJQQurEJHGNhHjGUI,508
3
- junifer/_version.py,sha256=GyAsN4t__QNl7uIDhLy7GlyhnLiTFiaNd9nlKJfEFik,526
3
+ junifer/_version.py,sha256=d3EVFi0MOnWGuCuWQ6uaVeyK5LZuY-FyV7QZCvwZ6T4,526
4
4
  junifer/conftest.py,sha256=PWYkkRDU8ly2lYwv7VBKMHje4et6HX7Yey3Md_I2KbA,613
5
5
  junifer/py.typed,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
6
6
  junifer/stats.py,sha256=e9aaagMGtgpRfW3Wdpz9ocpnYld1IWylCDcjFUgX9Mk,6225
7
7
  junifer/api/__init__.py,sha256=aAXW_KAEGQ8aAP5Eni2G1R4MWBF7UgjKOgM6akLuJco,252
8
8
  junifer/api/__init__.pyi,sha256=UJu55ApMFd43N0xlQyNKrYpCdzqhAxA3Jjaj0ETwCXU,169
9
- junifer/api/decorators.py,sha256=xphy55NJHnMZnJ-aNA70UzHUJ3SIgh5Xc8ekcozvj3U,2854
10
- junifer/api/functions.py,sha256=AeOSWA-U_Z18gtFYpFPvhk9Fip_FPWTW2NOMAzNIrQc,14242
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+ junifer/api/decorators.py,sha256=rBkoqHt_lKUb9b_ctbKNPk5E2XGHCiYSsMm3PrxDjdw,2853
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+ junifer/api/functions.py,sha256=LXKPqsfWINq1iSUShdryGB8hPOyyydc1ldHfr68bP20,14226
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- junifer/api/queue_context/gnu_parallel_local_adapter.py,sha256=3jynHE7dmKUrJN8KfuzUbUokk2ZtriFE5XdpIk1gz8g,10187
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- junifer/api/queue_context/htcondor_adapter.py,sha256=5gPlGbuNpfhcWuVB7BhqXqmtoKy2Wm1sAvaD2qOFpzo,13887
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+ junifer/api/queue_context/gnu_parallel_local_adapter.py,sha256=xCa1JxzQvsW9uyxGbU3YQC2_bmFdjYZYqVyzOjsWmK8,10131
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+ junifer/api/queue_context/htcondor_adapter.py,sha256=clNn6rBnHWKQP1fHiJT_PC44-wkYAhwMbg66pL2BJDs,13809
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@@ -49,7 +49,7 @@ junifer/cli/py.typed,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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- junifer/cli/tests/test_parser.py,sha256=5A6yI2t9Ou5w--wpEzXY7mdcVMWWFZaTNLPQ6yLU9gI,6113
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+ junifer/cli/tests/test_parser.py,sha256=qlBdLeeSfQWU8k63u7vAjS7FDd7Gh1yUWjhAOlC4Hic,7978
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  junifer/cli/tests/data/partly_cloudy_agg_mean_tian.yml,sha256=nS8K_R1hEuV71Vv-i9SYjnDGAK2FClQqBiE4kOuQ_ys,313
@@ -72,53 +72,30 @@ junifer/configs/juseless/datagrabbers/tests/test_ucla.py,sha256=l-1y_m6NJo7JExhy
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- junifer/data/_dispatch.py,sha256=JYUfzcn3MwMw1m-11bC1oKQrGB1kUjVwHgwdKIKA7rw,6170
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+ junifer/data/_dispatch.py,sha256=TZmz9CS9GNKu1fGk9H0SY_G45P0kCU1XY0xBYxEqm4A,6270
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- junifer/data/utils.py,sha256=Z7M682Y24JIl3GtMlPd87SmjTYCOt7qZZ1iQ7VC8GLc,3958
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+ junifer/data/utils.py,sha256=zVqlkc2jXFDv1jx8plXBHRL6y0h1eR_XzH7fkTJ6ric,3978
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- junifer/data/coordinates/_ants_coordinates_warper.py,sha256=5RWDC-nI3VG9lkSJ-_y_hlDtjPctKSJokQOp3v8ozwY,2956
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- junifer/data/coordinates/_coordinates.py,sha256=jfH1BhvYmXJNZfMYNvH70UaTfe5CNaes099EGHx3YfM,13345
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- junifer/data/coordinates/_fsl_coordinates_warper.py,sha256=5h7rwiPMYBQlA3sMZUImcpnNLLWvIp2-bAEaaHtzX9c,2409
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- junifer/data/coordinates/VOIs/meta/AutobiographicalMemory_VOIs.txt,sha256=9af38naeL18Tlt_gy_ep6vyTAxOB336JYjbo5FvP8PQ,686
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- junifer/data/coordinates/VOIs/meta/CogAR_VOIs.txt,sha256=t3NLwEVUZTPP34p15SaB3UInLrQyK-7Qc4iLBuQlZu8,189
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- junifer/data/coordinates/VOIs/meta/DMNBuckner_VOIs.txt,sha256=2trjgKF00PnCxTtfCXYmr-J7P_Jl-iX_qUocmzOR1nk,86
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- junifer/data/coordinates/VOIs/meta/Dosenbach2010_MNI_VOIs.txt,sha256=rIh9-OCBG0if2v1V4CeK27ZDVXPg6A2sFSqcwHZ1i3Y,3372
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- junifer/data/coordinates/VOIs/meta/Empathy_VOIs.txt,sha256=8rwZkEe-TrI7vT_ArzqIMSSlkGvg3RJG3PlHoxZKYjU,486
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- junifer/data/coordinates/VOIs/meta/Motor_VOIs.txt,sha256=NFpqgxlSrt9x3Tb9vn1ISogc684rRgVQbFPlifmI8S4,219
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- junifer/data/coordinates/VOIs/meta/PhysioStress_VOIs.txt,sha256=6hLYGMPFFnbhtu_9J3_hDul0LfUYAwhygzdLLG6R0qU,378
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- junifer/data/coordinates/VOIs/meta/Power2011_MNI_VOIs.txt,sha256=0tLVEmCEUjwJ7Rsdibv2qxilc2u-jvoBgCbOs7ax6iU,3836
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- junifer/data/coordinates/VOIs/meta/Power2013_MNI_VOIs.tsv,sha256=FERfBfExvbBWQxOJ4xRITiFB1rL4O4PpUeHFKPS03Fk,3836
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- junifer/data/coordinates/VOIs/meta/Rew_VOIs.txt,sha256=dCYre7kP4Ca-S52W0weU7N2UUZM8522WYlb9d7kUo-A,569
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- junifer/data/coordinates/VOIs/meta/Somatosensory_VOIs.txt,sha256=OylWpfoluG65whXqEODQ5qvreMdYXBQskMjmnvA2fYc,295
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- junifer/data/coordinates/VOIs/meta/eMDN_VOIs.txt,sha256=p5D4GdBuGl1d5IbXhsuj3XIU6UGMxhzCR-T8Dwfxz30,382
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- junifer/data/coordinates/VOIs/meta/eSAD_VOIs.txt,sha256=DwgDEFSZoAojG5RP6HpSvlRPpXItBzx8ms-1zoSxKRk,268
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- junifer/data/coordinates/VOIs/meta/extDMN_VOIs.txt,sha256=Ogx1QvqZcnXDM3ncF2ha78br8xwQ5wklSjHygtoLpyI,317
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- junifer/data/coordinates/tests/test_coordinates.py,sha256=mjHm90Fgytv47F2vPQHW58jRy6LLbAttizEeg1zjxmA,4196
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+ junifer/data/coordinates/_ants_coordinates_warper.py,sha256=9nIdg4B5EMje8s30n_8Dl7eYko3HmVJ8jyZpXETg8Sk,2976
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+ junifer/data/coordinates/_coordinates.py,sha256=DHjSPaA3ntlP85SERefqkiGkq-rITrR9dpONj4oQwgc,13365
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+ junifer/data/coordinates/_fsl_coordinates_warper.py,sha256=fxxvsiq-hSeP_PDokMHJSxlyffMugzSDUHhKzuU7Vg4,2429
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+ junifer/data/coordinates/tests/test_coordinates.py,sha256=JG045I7l5zcxGRQMbZZTrJY0TI5ZKaJ_szGMB6j1ZRI,4623
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- junifer/data/masks/_fsl_mask_warper.py,sha256=YZOMlRgQ7_4shnXNc_05tmwDk5xHI-1wqle-RdNsJ34,2857
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+ junifer/data/masks/_ants_mask_warper.py,sha256=YJYVuD4QkgFwUSs1edt2rrqfHYHaIR1u85HSeQE4GUk,5825
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+ junifer/data/masks/_fsl_mask_warper.py,sha256=7-Aw4m9GA7ZLqB26jjuKYJUJSv9V11DfPFNBbb5caSE,2877
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- junifer/data/masks/tests/test_masks.py,sha256=W0bzRB5Bp-iGO44VtEmaf7BuT-joe_2tQI0lma5NQHA,16090
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- junifer/data/masks/ukb/UKB_15K_GM_template.nii.gz,sha256=jcX1pDOrDsoph8cPMNFVKH5gZYio5G4rJNpOFXm9wJI,946636
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- junifer/data/masks/vickery-patil/CAT12_IXI555_MNI152_TMP_GS_GMprob0.2_clean.nii.gz,sha256=j6EY8EtRnUuRxeKgD65Q6B0GPEPIALKDJEIje1TfnAU,88270
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- junifer/data/masks/vickery-patil/CAT12_IXI555_MNI152_TMP_GS_GMprob0.2_clean_3mm.nii.gz,sha256=crb_y7YO1vjjf2PwbRJUm8KamPK6fx1y0B_l-E3g8FY,12862
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- junifer/data/masks/vickery-patil/GMprob0.2_cortex_3mm_NA_rm.nii.gz,sha256=jfMe_4H9XEnArYms5bSQbqS2V1_HbLHTfI5amQa_Pes,8700
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+ junifer/data/masks/tests/test_masks.py,sha256=VK3IenIwhaYpbESe0pOjb40OKE6rcRlw8ddsBxSRfyU,16688
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- junifer/data/parcellations/_ants_parcellation_warper.py,sha256=YUCJC0_wutGw7j_n9JRU3LCwm9Ttg5PIlJUgqejfRhs,5806
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- junifer/data/parcellations/_fsl_parcellation_warper.py,sha256=JfJ022flg5OR48P4OAALVHHQgTVxdMBXT-fAqBl3nUM,2679
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- junifer/data/parcellations/_parcellations.py,sha256=meMSrOMQpY0wCyoOdIVsJcZb3uRLi4vqtDehOvXOyic,48567
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- junifer/data/parcellations/tests/test_parcellations.py,sha256=Pf7klYabWikrvanYPlukq2GcVyFXDc_IVB2TgN_BU9c,36027
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- junifer/data/tests/test_data_utils.py,sha256=136iGPjGecCxyqgUwU8VZMHoE6imcYJ0WNC32PDGK4g,1063
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+ junifer/data/parcellations/_ants_parcellation_warper.py,sha256=LIfeIAv3bFQbIrl6Cr7RU2RdkA-c2G6qURIBUe5MJCQ,5826
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+ junifer/data/parcellations/_fsl_parcellation_warper.py,sha256=lmZDPv2fMjOnbJ0z2d3K9S7QH2bgYd5bXbzxNDUR5NY,2699
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+ junifer/data/parcellations/_parcellations.py,sha256=bby15ZET8AhudtUg74CAMz_eKRMCUbRGmKSOfwGl-5o,48490
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+ junifer/data/parcellations/tests/test_parcellations.py,sha256=898lhEpmVW-KcjD2Wj--oe_AU8qOSmK78rZrbj86vpY,37324
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+ junifer/data/tests/test_data_utils.py,sha256=6-UQ7HDZ7_zA7iQalzk29KJBdftQMVyqKsQ0tx1URkE,1062
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@@ -127,14 +104,14 @@ junifer/datagrabber/datalad_base.py,sha256=52T2DbqDGOxiKSESBESzElrVJ3WihLWrrGlQe
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- junifer/datagrabber/pattern_datalad.py,sha256=QPWXIToYHDU4mvm9lz_hy8BjdqqoCXiGiJKCcATrT-w,4568
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- junifer/datagrabber/pattern_validation_mixin.py,sha256=6IlL5EMbr-XEtiiXs_buD3DJkujjs335BmAgAiWGZ3M,19369
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+ junifer/datagrabber/pattern_datalad.py,sha256=7jY-0Xw0G-mKG0BgXNTQPuS-KPnpFhvqfVOZtD6Yfcc,4567
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+ junifer/datagrabber/pattern_validation_mixin.py,sha256=3MwpeUePm8eGgbe-J2kTWs9x5bk1SR3nhojHwN95SXM,19368
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- junifer/datagrabber/aomic/id1000.py,sha256=GNURDZUBqystS2fn9COtIJkDfUVkwsS2uBuVcZQArqc,7931
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- junifer/datagrabber/aomic/piop1.py,sha256=johUxDm4rS0QOH9JwotxzVYOWeTrVAdfXuHnkE-o7TI,10329
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- junifer/datagrabber/aomic/piop2.py,sha256=JxZqX6i_Jrj3evcxnblSdmWqS2bV5XxoIGhAUoSs8o4,9990
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+ junifer/datagrabber/aomic/id1000.py,sha256=O1nx5IcsRZpYx7WkxnFuMad4TRwDjFkH_v3-1dTFEMs,8030
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+ junifer/datagrabber/aomic/piop1.py,sha256=V_vGfxmwME0_AtB3QDhsfeO86wScBx0aAdgB2yAX8pE,10334
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+ junifer/datagrabber/aomic/piop2.py,sha256=SisjZS1MyZTDorWKk5qdlU4yrV5t22s1Accqr01pWNQ,9995
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@@ -147,7 +124,7 @@ junifer/datagrabber/hcp1200/py.typed,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZ
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- junifer/datagrabber/tests/test_dmcc13_benchmark.py,sha256=QSdYAAwAj1DoE1oLhoraIc4lAgUgIaJyrtcOs_witzM,9914
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+ junifer/datagrabber/tests/test_dmcc13_benchmark.py,sha256=h5zLrcP7BbSCeGLt2VfCsiFglAvVRnGjUi7nETrf8No,9858
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  junifer/datagrabber/tests/test_multiple.py,sha256=tZBQhlEiSE1PeQ5E3TtuVgsHENquna9t39p54AJ-O5w,9963
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@@ -180,8 +157,8 @@ junifer/external/nilearn/tests/test_junifer_connectivity_measure.py,sha256=CVUA1
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  junifer/external/nilearn/tests/test_junifer_nifti_spheres_masker.py,sha256=9UvBAVO-uo0nMIHYfAQ85kJMrwpBxpVRsN1-mHLk7ik,12244
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- junifer/markers/brainprint.py,sha256=XGYOhO91pZn-9YNbeGtMgvi9531-EP_Zu0jOanHnx2M,15144
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+ junifer/markers/base.py,sha256=GSU6NJA97pTMpFPyoTQrNffG0zXB_dwV_Eire4EnHQw,8283
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+ junifer/markers/brainprint.py,sha256=ea0IqfFFON0r5Tg_KxRC-9JQmkWRWjdX0sYDo0tHxQs,15244
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@@ -211,8 +188,8 @@ junifer/markers/falff/__init__.pyi,sha256=X-q2zBjUX0imQ37yN2Cg5gKfDvq8sh_9y2hRH4
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+ junifer/markers/falff/falff_parcels.py,sha256=ivbteM1tincSREDZIoWKdkrn1bfvkaKtDiYFuCSjpIM,5941
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+ junifer/markers/falff/falff_spheres.py,sha256=NfBmS-ionlOYjRGxf_HiqABZATsdKvzmBjHXZ30powY,6580
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+ junifer/markers/functional_connectivity/functional_connectivity_base.py,sha256=dvkK9hNy5fXV7c0gwhf7xLOIYXeLPftu4-XqLVENoXE,5782
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+ junifer/markers/functional_connectivity/tests/test_functional_connectivity_parcels.py,sha256=rUNMA91w5nRigCtbEwChEaRTZIC4qc6gTqoEizfSo2Q,3892
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+ junifer/markers/functional_connectivity/tests/test_functional_connectivity_spheres.py,sha256=IEXEKYbCrtW1hOAvpczSqCtna5LAS4Si8K8OQm3CddI,4158
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+ junifer/markers/reho/reho_base.py,sha256=45K2G8Da-ZqN_Pw_XgoYoE5truOJuE7OMjtvF6yjlF0,4076
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+ junifer/markers/reho/reho_parcels.py,sha256=SX-x7JNrdL_kIlaYrBhIbfNoQxZlVgnrbcoNFE6-MDc,6391
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+ junifer/markers/temporal_snr/temporal_snr_base.py,sha256=CJOFPdwYNDWuBQmP7d6CBttBd-WBOBXWYT32I0HRjE4,3910
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@@ -253,13 +230,13 @@ junifer/markers/temporal_snr/tests/test_temporal_snr_spheres.py,sha256=cxYnKreFR
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- junifer/markers/tests/test_markers_base.py,sha256=XYe1Z_88h2g1WX6Em4aM8VMyBuCpy5sNHbbpC0I89m4,2979
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+ junifer/markers/tests/test_markers_base.py,sha256=qflJs_pg-HfwqaUb9q1_sGFUqlXB4y3tHP8jo9u8EcA,2978
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+ junifer/onthefly/_brainprint.py,sha256=-BswaAV9SLHU8mmWJ2KbPL7FgERJzIQIbSdV-NYiiYI,3802
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+ junifer/onthefly/read_transform.py,sha256=JfTJIiZnautkJ6DzsjeWQ7AEDRHV4omfinvDkow3FFM,4272
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+ junifer/onthefly/tests/test_read_transform.py,sha256=Ed6gtj8bsD11fe0Y1AxG2JndtITDSBje4g3hx3wkbAo,4718
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@@ -268,8 +245,8 @@ junifer/pipeline/pipeline_step_mixin.py,sha256=oXfJh27yifHs1V3V_tMPCanRiHX1ggOVI
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- junifer/pipeline/tests/test_marker_collection.py,sha256=edBHfmwMTXG_q0ZagApbAbkFNoegi3hVEQiNcBtZOKc,6959
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+ junifer/pipeline/workdir_manager.py,sha256=L9_roiBW1IgCSPVuFhCouGcH2PCLFetk4OKhHIu6bNA,8605
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+ junifer/pipeline/tests/test_marker_collection.py,sha256=FwxJvjYQ3mh_e3uFZSlOnuGu0EIx4L-Niqt4UOKU6YM,6968
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@@ -280,9 +257,9 @@ junifer/preprocess/base.py,sha256=hARO4Yq9sQ8m2tATeuBmPMbI4BSnwNxLf2prF8Iq_Tk,66
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+ junifer/preprocess/confounds/fmriprep_confound_remover.py,sha256=o7mD_TRnflske75CJxSbg2uTN5zlJ4W0iovS8iQtnfg,27052
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+ junifer/preprocess/confounds/tests/test_fmriprep_confound_remover.py,sha256=qqSZL3RgKOTu3eu1ASxackemFlSqBmy7VSNk0ksP9s8,23531
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@@ -290,27 +267,27 @@ junifer/preprocess/smoothing/_fsl_smoothing.py,sha256=vIj1sUjysujjPErZH2T5G1Grca
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+ junifer/preprocess/smoothing/tests/test_smoothing.py,sha256=IYL-IaRYIuhOU7jGixgNuT-ed_i6q9gmDhK-ZpXAGeU,2389
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- junifer/preprocess/warping/_fsl_warper.py,sha256=dH1xd3jTRPREzgdh98Dz_4o2gwdrOgc0h5wbARSSB98,5226
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+ junifer/preprocess/warping/_ants_warper.py,sha256=l5UQKC5iU3l9P--IgqmYeHiPC-uB1l4u9iBgd2ODzC4,10166
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+ junifer/preprocess/warping/_fsl_warper.py,sha256=UPAcegtYbsxDchKEGMMAnm5zaOLcB-RmfGNn9p_P-Uw,5246
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+ junifer/preprocess/warping/space_warper.py,sha256=hh7lzlW-9NTbz9eCNJIIfs_oV5dKKFzdm7YEtDCX77k,7770
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+ junifer/storage/hdf5.py,sha256=TjmkPEl4zkGUfgnvAmwqlL_V48m_IBuxjk81ouA_UNQ,40485
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+ junifer/storage/pandas_base.py,sha256=SYpbPdzkslrRcJdxZkW1NRUYRnAxMGAn1XhdCA8Yals,7554
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- junifer/storage/sqlite.py,sha256=QzkKB1pD4qNjrMe0bB7ATHnPgNjteTrP3ULCE_XuwD0,21269
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+ junifer/storage/sqlite.py,sha256=18bQsfov5DTlGFlVMV9akTiatO7QPWMBcynZRetEBQM,21202
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- junifer/storage/tests/test_hdf5.py,sha256=yEh5jw_6i37bch27FXIZmDPCA8vEfc-0TehXp9sYX0Y,34144
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- junifer/storage/tests/test_pandas_base.py,sha256=y_TfUGpuXkj_39yVon3rMDxMeBrZXs58ZW6OSty5LNw,4058
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+ junifer/storage/tests/test_hdf5.py,sha256=qlhc4DvQ_ruI5D6FPXL9jL8x9undFzOZZnMkmsax5EU,34169
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+ junifer/storage/tests/test_pandas_base.py,sha256=S7_XM9EeBFoC4ojI0wYTFEXT5XMTWeVHiW6ddXdIjEI,4082
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- junifer/storage/tests/test_storage_base.py,sha256=o2CbklSxaq3XDX8XPf5aG5hiXzpBCmc5XXckCIsLVOo,3201
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+ junifer/storage/tests/test_storage_base.py,sha256=Ic4zaPPhaKJDujfjxOM3h0GOhCtMnfT_jdWsuskKMac,3214
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@@ -334,17 +311,17 @@ junifer/utils/_config.py,sha256=cfxyv1bfklID2atQseu6y3J7mZrCXPwnGEfBSImG9CM,3054
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- junifer/utils/logging.py,sha256=8rWEtZPohugiB7niF9yvybi79w3Sj5xcaImJhsuXxks,12998
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+ junifer/utils/logging.py,sha256=qAlaVXuPyqaFX9P0As9mzMiTQ5qC4Dx9C3y9Ol8oOj0,10627
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  junifer/utils/tests/test_helpers.py,sha256=k5qqfxK8dFyuewTJyR1Qn6-nFaYNuVr0ysc18bfPjyU,929
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- junifer/utils/tests/test_logging.py,sha256=duO4ou365hxwa_kwihFtKPLaL6LC5XHiyhOijrrngbA,8009
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- junifer-0.0.7.dev18.dist-info/licenses/AUTHORS.rst,sha256=rmULKpchpSol4ExWFdm-qu4fkpSZPYqIESVJBZtGb6E,163
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- junifer-0.0.7.dev18.dist-info/licenses/LICENSE.md,sha256=MqCnOBu8uXsEOzRZWh9EBVfVz-kE9NkXcLCrtGXo2yU,34354
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- junifer-0.0.7.dev18.dist-info/METADATA,sha256=CUXcvLUz6uv5RXTxeF45miX5qqdHSnOrbqHu1h9luRY,8441
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- junifer-0.0.7.dev18.dist-info/WHEEL,sha256=CmyFI0kx5cdEMTLiONQRbGQwjIoR1aIYB7eCAQ4KPJ0,91
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- junifer-0.0.7.dev18.dist-info/entry_points.txt,sha256=6O8ru0BP-SP7YMUZiizFNoaZ2HvJpadO2G7nKk4PwjI,48
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- junifer-0.0.7.dev18.dist-info/top_level.txt,sha256=4bAq1R2QFQ4b3hohjys2JBvxrl0GKk5LNFzYvz9VGcA,8
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- junifer-0.0.7.dev18.dist-info/RECORD,,
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+ junifer/utils/tests/test_logging.py,sha256=W4tFKmaf8_CxnWZ-o_-XxM7DQbhGG18RsLZJk8bZelI,8163
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+ junifer-0.0.7.dev47.dist-info/licenses/AUTHORS.rst,sha256=rmULKpchpSol4ExWFdm-qu4fkpSZPYqIESVJBZtGb6E,163
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+ junifer-0.0.7.dev47.dist-info/licenses/LICENSE.md,sha256=MqCnOBu8uXsEOzRZWh9EBVfVz-kE9NkXcLCrtGXo2yU,34354
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+ junifer-0.0.7.dev47.dist-info/METADATA,sha256=OgpXHhSyqN129oTC78VpDGc5BRJm0L4tJTOg48GmWbc,8387
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+ junifer-0.0.7.dev47.dist-info/WHEEL,sha256=SmOxYU7pzNKBqASvQJ7DjX3XGUF92lrGhMb3R6_iiqI,91
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+ junifer-0.0.7.dev47.dist-info/entry_points.txt,sha256=6O8ru0BP-SP7YMUZiizFNoaZ2HvJpadO2G7nKk4PwjI,48
326
+ junifer-0.0.7.dev47.dist-info/top_level.txt,sha256=4bAq1R2QFQ4b3hohjys2JBvxrl0GKk5LNFzYvz9VGcA,8
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+ junifer-0.0.7.dev47.dist-info/RECORD,,