junifer 0.0.7.dev18__py3-none-any.whl → 0.0.7.dev47__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (91) hide show
  1. junifer/_version.py +2 -2
  2. junifer/api/decorators.py +0 -1
  3. junifer/api/functions.py +1 -2
  4. junifer/api/queue_context/gnu_parallel_local_adapter.py +4 -7
  5. junifer/api/queue_context/htcondor_adapter.py +6 -10
  6. junifer/cli/tests/test_parser.py +66 -0
  7. junifer/data/_dispatch.py +5 -5
  8. junifer/data/coordinates/_ants_coordinates_warper.py +1 -1
  9. junifer/data/coordinates/_coordinates.py +1 -1
  10. junifer/data/coordinates/_fsl_coordinates_warper.py +1 -1
  11. junifer/data/coordinates/tests/test_coordinates.py +38 -16
  12. junifer/data/masks/_ants_mask_warper.py +1 -1
  13. junifer/data/masks/_fsl_mask_warper.py +1 -1
  14. junifer/data/masks/tests/test_masks.py +66 -33
  15. junifer/data/parcellations/_ants_parcellation_warper.py +1 -1
  16. junifer/data/parcellations/_fsl_parcellation_warper.py +1 -1
  17. junifer/data/parcellations/_parcellations.py +7 -7
  18. junifer/data/parcellations/tests/test_parcellations.py +162 -76
  19. junifer/data/tests/test_data_utils.py +0 -1
  20. junifer/data/utils.py +1 -1
  21. junifer/datagrabber/aomic/id1000.py +6 -0
  22. junifer/datagrabber/aomic/piop1.py +4 -3
  23. junifer/datagrabber/aomic/piop2.py +4 -3
  24. junifer/datagrabber/pattern_datalad.py +0 -1
  25. junifer/datagrabber/pattern_validation_mixin.py +0 -1
  26. junifer/datagrabber/tests/test_dmcc13_benchmark.py +4 -8
  27. junifer/markers/base.py +3 -3
  28. junifer/markers/brainprint.py +5 -5
  29. junifer/markers/complexity/multiscale_entropy_auc.py +3 -3
  30. junifer/markers/complexity/range_entropy.py +3 -3
  31. junifer/markers/complexity/sample_entropy.py +3 -3
  32. junifer/markers/falff/falff_parcels.py +2 -6
  33. junifer/markers/falff/falff_spheres.py +2 -6
  34. junifer/markers/functional_connectivity/functional_connectivity_base.py +0 -1
  35. junifer/markers/functional_connectivity/tests/test_functional_connectivity_parcels.py +2 -1
  36. junifer/markers/functional_connectivity/tests/test_functional_connectivity_spheres.py +2 -1
  37. junifer/markers/reho/_afni_reho.py +1 -1
  38. junifer/markers/reho/reho_base.py +0 -1
  39. junifer/markers/reho/reho_parcels.py +0 -1
  40. junifer/markers/reho/reho_spheres.py +0 -1
  41. junifer/markers/temporal_snr/temporal_snr_base.py +0 -1
  42. junifer/markers/tests/test_markers_base.py +0 -1
  43. junifer/onthefly/_brainprint.py +3 -3
  44. junifer/onthefly/read_transform.py +1 -2
  45. junifer/onthefly/tests/test_read_transform.py +0 -1
  46. junifer/pipeline/tests/test_marker_collection.py +2 -1
  47. junifer/pipeline/workdir_manager.py +1 -2
  48. junifer/preprocess/confounds/fmriprep_confound_remover.py +1 -1
  49. junifer/preprocess/confounds/tests/test_fmriprep_confound_remover.py +0 -1
  50. junifer/preprocess/smoothing/tests/test_smoothing.py +0 -1
  51. junifer/preprocess/warping/_ants_warper.py +2 -3
  52. junifer/preprocess/warping/_fsl_warper.py +1 -1
  53. junifer/preprocess/warping/space_warper.py +4 -2
  54. junifer/storage/hdf5.py +14 -2
  55. junifer/storage/pandas_base.py +3 -1
  56. junifer/storage/sqlite.py +3 -8
  57. junifer/storage/tests/test_hdf5.py +1 -0
  58. junifer/storage/tests/test_pandas_base.py +6 -3
  59. junifer/storage/tests/test_storage_base.py +2 -1
  60. junifer/utils/logging.py +38 -128
  61. junifer/utils/tests/test_logging.py +12 -4
  62. {junifer-0.0.7.dev18.dist-info → junifer-0.0.7.dev47.dist-info}/METADATA +3 -2
  63. {junifer-0.0.7.dev18.dist-info → junifer-0.0.7.dev47.dist-info}/RECORD +68 -91
  64. {junifer-0.0.7.dev18.dist-info → junifer-0.0.7.dev47.dist-info}/WHEEL +1 -1
  65. junifer/data/coordinates/VOIs/meta/AutobiographicalMemory_VOIs.txt +0 -23
  66. junifer/data/coordinates/VOIs/meta/CogAC_VOIs.txt +0 -19
  67. junifer/data/coordinates/VOIs/meta/CogAR_VOIs.txt +0 -8
  68. junifer/data/coordinates/VOIs/meta/DMNBuckner_VOIs.txt +0 -6
  69. junifer/data/coordinates/VOIs/meta/Dosenbach2010_MNI_VOIs.txt +0 -160
  70. junifer/data/coordinates/VOIs/meta/Empathy_VOIs.txt +0 -22
  71. junifer/data/coordinates/VOIs/meta/Motor_VOIs.txt +0 -10
  72. junifer/data/coordinates/VOIs/meta/MultiTask_VOIs.txt +0 -9
  73. junifer/data/coordinates/VOIs/meta/PhysioStress_VOIs.txt +0 -18
  74. junifer/data/coordinates/VOIs/meta/Power2011_MNI_VOIs.txt +0 -264
  75. junifer/data/coordinates/VOIs/meta/Power2013_MNI_VOIs.tsv +0 -264
  76. junifer/data/coordinates/VOIs/meta/Rew_VOIs.txt +0 -25
  77. junifer/data/coordinates/VOIs/meta/Somatosensory_VOIs.txt +0 -10
  78. junifer/data/coordinates/VOIs/meta/ToM_VOIs.txt +0 -15
  79. junifer/data/coordinates/VOIs/meta/VigAtt_VOIs.txt +0 -16
  80. junifer/data/coordinates/VOIs/meta/WM_VOIs.txt +0 -23
  81. junifer/data/coordinates/VOIs/meta/eMDN_VOIs.txt +0 -17
  82. junifer/data/coordinates/VOIs/meta/eSAD_VOIs.txt +0 -12
  83. junifer/data/coordinates/VOIs/meta/extDMN_VOIs.txt +0 -16
  84. junifer/data/masks/ukb/UKB_15K_GM_template.nii.gz +0 -0
  85. junifer/data/masks/vickery-patil/CAT12_IXI555_MNI152_TMP_GS_GMprob0.2_clean.nii.gz +0 -0
  86. junifer/data/masks/vickery-patil/CAT12_IXI555_MNI152_TMP_GS_GMprob0.2_clean_3mm.nii.gz +0 -0
  87. junifer/data/masks/vickery-patil/GMprob0.2_cortex_3mm_NA_rm.nii.gz +0 -0
  88. {junifer-0.0.7.dev18.dist-info → junifer-0.0.7.dev47.dist-info}/entry_points.txt +0 -0
  89. {junifer-0.0.7.dev18.dist-info → junifer-0.0.7.dev47.dist-info}/licenses/AUTHORS.rst +0 -0
  90. {junifer-0.0.7.dev18.dist-info → junifer-0.0.7.dev47.dist-info}/licenses/LICENSE.md +0 -0
  91. {junifer-0.0.7.dev18.dist-info → junifer-0.0.7.dev47.dist-info}/top_level.txt +0 -0
{junifer-0.0.7.dev18.dist-info → junifer-0.0.7.dev47.dist-info}/WHEEL RENAMED
@@ -1,5 +1,5 @@
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  Wheel-Version: 1.0
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- Generator: setuptools (78.1.0)
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+ Generator: setuptools (79.0.1)
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  Root-Is-Purelib: true
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  Tag: py3-none-any
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junifer/data/coordinates/VOIs/meta/AutobiographicalMemory_VOIs.txt DELETED
@@ -1,23 +0,0 @@
1
- -2 -53 18 PCu-PCC_LR
2
- -25 -26 -14 HC-PHC-AMG_L
3
- -47 -61 26 TPJ_L
4
- -3 47 -1 Medial-prefrontal-cortex_rACC(bilateral)_L
5
- -56 -8 -14 STS_MTG_inferior-temporal-sulcus_L
6
- -47 25 -5 Ventrolateral-prefrontal-cortex_temporal-pole_L
7
- 23 -31 -12 HC-PHC_R
8
- -3 12 57 Middle-frontal-gyrus_LR
9
- 49 -59 27 TPJ_R
10
- -45 3 45 Posterior-lateral-prefrontal-cortex_L
11
- -40 47 14 Frontal-pole(lateral)_L
12
- 23 -13 -15 HC-PHC_R
13
- 49 -5 -13 Temporal-pole_STS_MTG_R
14
- -37 14 -32 Temporal-pole_L
15
- -37 -81 30 Occ_L
16
- -46 24 21 Dorsolateral-prefrontal-cortex_L
17
- 50 27 -5 Ventrolateral-prefrontal-cortex_R
18
- -11 55 17 Frontal_pole(medial)_L
19
- 3 -9 5 Thalamus_R
20
- -5 33 22 rACC_L
21
- -6 -37 33 PCC_L
22
- -28 9 51 Superior-frontal-sulcus_L
23
- 28 1 -19 AMG_R
junifer/data/coordinates/VOIs/meta/CogAC_VOIs.txt DELETED
@@ -1,19 +0,0 @@
1
- 36.0 22.0 -4.0 RaIns
2
- 2.0 16.0 48.0 preSMA
3
- 48.0 12.0 30.0 rIFGp
4
- 36.0 2.0 54.0 rdPMC
5
- 48.0 30.0 24.0 rIFGa
6
- -38.0 -44.0 46.0 lIPS
7
- -24.0 -66.0 48.0 lSPL
8
- 40.0 -46.0 46.0 rIPS
9
- 60.0 -44.0 24.0 rIPC
10
- 30.0 -62.0 52.0 rSPL
11
- -44.0 10.0 30.0 lIFG
12
- -34.0 20.0 -4.0 LaIns
13
- -26.0 2.0 52.0 ldPMC
14
- 6.0 -18.0 -2.0 rThal
15
- -40.0 -66.0 -10.0 lIOG
16
- 48.0 19.0 6.0 rIFG
17
- 8.0 29.0 30.0 aMCC
18
- -45.0 27.0 30.0 lIFG
19
- 11.0 7.0 7.0 rNcaud
junifer/data/coordinates/VOIs/meta/CogAR_VOIs.txt DELETED
@@ -1,8 +0,0 @@
1
- -40 -64 -12 Fusiform_L
2
- 36 22 -4 Insula_R
3
- -44 10 32 Precentral_L
4
- 60 -44 24 Temporal_Sup_R
5
- 0 18 48 Supp_Motor_Area_L
6
- -36 -46 46 Parietal_Inf_L
7
- 38 -46 44 Parietal_Inf_R
8
- -26 0 54 Frontal_Mid_L
junifer/data/coordinates/VOIs/meta/DMNBuckner_VOIs.txt DELETED
@@ -1,6 +0,0 @@
1
- 0 -53 26 PCC
2
- 0 52 -6 MPFC
3
- -48 -62 36 lAG
4
- 46 -62 32 rAG
5
- -24 -22 -20 lHF
6
- 24 -22 -20 rHF
junifer/data/coordinates/VOIs/meta/Dosenbach2010_MNI_VOIs.txt DELETED
@@ -1,160 +0,0 @@
1
- 6 64 3 vmPFC
2
- 29 57 18 aPFC
3
- -29 57 10 aPFC
4
- 0 51 32 mPFC
5
- -25 51 27 aPFC
6
- 9 51 16 vmPFC
7
- -6 50 -1 vmPFC
8
- 27 49 26 aPFC
9
- 42 48 -3 vent aPFC
10
- -43 47 2 vent aPFC
11
- -11 45 17 vmPFC
12
- 39 42 16 vlPFC
13
- 8 42 -5 vmPFC
14
- 9 39 20 ACC
15
- 46 39 -15 vlPFC
16
- 40 36 29 dlPFC
17
- 23 33 47 sup frontal
18
- 34 32 7 vPFC
19
- -2 30 27 ACC
20
- -16 29 54 sup frontal
21
- -1 28 40 ACC
22
- 46 28 31 dlPFC
23
- -52 28 17 vPFC
24
- -44 27 33 dlPFC
25
- 51 23 8 vFC
26
- 38 21 -1 ant insula
27
- 9 20 34 dACC
28
- -36 18 2 ant insula
29
- 40 17 40 dFC
30
- -6 17 34 basal ganglia
31
- 0 15 45 mFC
32
- 58 11 14 frontal
33
- -46 10 14 vFC
34
- 44 8 34 dFC
35
- 60 8 34 dFC
36
- -42 7 36 dFC
37
- -55 7 23 vFC
38
- -20 6 7 basal ganglia
39
- 14 6 7 basal ganglia
40
- -48 6 1 vFC
41
- 10 5 51 pre-SMA
42
- 43 1 12 vFC
43
- 0 -1 52 SMA
44
- 37 -2 -3 mid insula
45
- 53 -3 32 frontal
46
- 58 -3 17 precentral gyrus
47
- -12 -3 13 thalamus
48
- -42 -3 11 mid insula
49
- -44 -6 49 precentral gyrus
50
- -26 -8 54 parietal
51
- 46 -8 24 precentral gyrus
52
- -54 -9 23 precentral gyrus
53
- 44 -11 38 precentral gyrus
54
- -47 -12 36 parietal
55
- 33 -12 16 mid insula
56
- -36 -12 15 mid insula
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- -12 -12 6 thalamus
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- 11 -12 6 thalamus
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- 32 -12 2 mid insula
60
- 59 -13 8 temporal
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- -30 -14 1 mid insula
62
- -38 -15 59 parietal
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- 52 -15 -13 inf temporal
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- -47 -18 50 parietal
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- 46 -20 45 parietal
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- -55 -22 38 parietal
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- -54 -22 22 precentral gyrus
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- -54 -22 9 temporal
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- 41 -23 55 parietal
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- 42 -24 17 post insula
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- 11 -24 2 basal ganglia
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- -59 -25 -15 inf temporal
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- 1 -26 31 post cingulate
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- 18 -27 62 parietal
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- -38 -27 60 parietal
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- -30 -28 9 post insula
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- -24 -30 64 parietal
78
- 51 -30 5 temporal
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- -41 -31 48 post parietal
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- -4 -31 -4 post cingulate
81
- 54 -31 -18 fusiform
82
- -41 -37 16 temporal
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- -53 -37 13 temporal
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- 28 -37 -15 fusiform
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- -3 -38 45 precuneus
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- 34 -39 65 sup parietal
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- 8 -40 50 precuneus
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- -41 -40 42 IPL
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- 58 -41 20 parietal
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- -8 -41 3 post cingulate
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- -61 -41 -2 inf temporal
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- -28 -42 -11 occipital
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- -5 -43 25 post cingulate
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- 9 -43 25 precuneus
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- 43 -43 8 temporal
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- 54 -44 43 IPL
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- -55 -44 30 parietal
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- -28 -44 -25 lat cerebellum
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- -35 -46 48 post parietal
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- 42 -46 21 sup temporal
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- -48 -47 49 IPL
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- -41 -47 29 angular gyrus
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- -59 -47 11 temporal
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- -53 -50 39 IPL
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- 5 -50 33 precuneus
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- -18 -50 1 occipital
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- 44 -52 47 IPL
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- -5 -52 17 post cingulate
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- -24 -54 -21 lat cerebellum
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- -37 -54 -37 inf cerebellum
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- 10 -55 17 post cingulate
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- -6 -56 29 precuneus
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- -34 -57 -24 lat cerebellum
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- -32 -58 46 IPS
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- -11 -58 17 post cingulate
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- 32 -59 41 IPS
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- 51 -59 34 angular gyrus
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- -34 -60 -5 occipital
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- 36 -60 -8 occipital
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- -6 -60 -15 med cerebellum
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- -25 -60 -34 inf cerebellum
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- 32 -61 -31 inf cerebellum
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- 46 -62 5 temporal
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- -48 -63 35 angular gyrus
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- -52 -63 15 TPJ
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- -44 -63 -7 occipital
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- -16 -64 -21 med cerebellum
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- 21 -64 -22 lat cerebellum
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- 19 -66 -1 occipital
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- 1 -66 -24 med cerebellum
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- -34 -67 -29 inf cerebellum
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- 11 -68 42 precuneus
133
- 17 -68 20 occipital
134
- -36 -69 40 IPS
135
- 39 -71 13 occipital
136
- -9 -72 41 occipital
137
- 45 -72 29 occipital
138
- -11 -72 -14 med cerebellum
139
- 29 -73 29 occipital
140
- 33 -73 -30 inf cerebellum
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- -2 -75 32 occipital
142
- -29 -75 28 occipital
143
- 5 -75 -11 med cerebellum
144
- 14 -75 -21 med cerebellum
145
- -16 -76 33 occipital
146
- -42 -76 26 occipital
147
- 9 -76 14 occipital
148
- 15 -77 32 occipital
149
- 20 -78 -2 occipital
150
- -21 -79 -33 inf cerebellum
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- -6 -79 -33 inf cerebellum
152
- -5 -80 9 post occipital
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- 29 -81 14 post occipital
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- 33 -81 -2 post occipital
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- 18 -81 -33 inf cerebellum
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- -37 -83 -2 post occipital
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- -29 -88 8 post occipital
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- 13 -91 2 post occipital
159
- 27 -91 2 post occipital
160
- -4 -94 12 post occipital
junifer/data/coordinates/VOIs/meta/Empathy_VOIs.txt DELETED
@@ -1,22 +0,0 @@
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- 2.0 56.0 18.0 dmPFC
2
- -8.0 54.0 34.0 dmPFC
3
- 36.0 22.0 -8.0 raI
4
- -30.0 20.0 4.0 laI
5
- 50.0 12.0 -8.0 rIFG
6
- 54.0 16.0 20.0 rIFG/Area44
7
- 50.0 30.0 4.0 rIFG/Area45
8
- -44.0 24.0 -6.0 lIFG
9
- -4.0 18.0 50.0 SMA
10
- -2.0 28.0 20.0 aMCC
11
- -4.0 42.0 18.0 rACC
12
- -2.0 -32.0 28.0 PCC
13
- 52.0 -58.0 22.0 rTPJ
14
- -56.0 -58.0 22.0 lTPJ
15
- 22.0 -2.0 -16.0 rAm
16
- 54.0 -8.0 -16.0 rMTG
17
- 52.0 -36.0 2.0 rpSTS
18
- -12.0 -4.0 12.0 laTh
19
- 6.0 -32.0 2.0 rpTh
20
- 26.0 -26.0 -12.0 rHippo
21
- 2.0 -20.0 -12.0 Midbrain
22
- 14.0 4.0 0.0 rGP
junifer/data/coordinates/VOIs/meta/Motor_VOIs.txt DELETED
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- -39.0 -21.0 54.0 lSMC*
2
- 41.0 -16.0 57.0 rSMC*
3
- -3.0 -2.0 54.0 SMA
4
- -57.0 2.0 32.0 lPMCv
5
- -53.0 -24.0 21.0 lIPC
6
- 45.0 -38.0 48.0 rIPC
7
- -23.0 -7.0 1.0 lBG
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- 25.0 -8.0 3.0 rBG
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- -22.0 -52.0 26.0 lCba
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- 18.0 -54.0 -22.0 rCba
junifer/data/coordinates/VOIs/meta/MultiTask_VOIs.txt DELETED
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- -34 22 -4 leftInsula
2
- 34 24 0 rightInsula
3
- -26 0 52 Frontal_Mid_L
4
- 44 38 28 Frontal_Inf_Tri_R
5
- 46 10 28 Frontal_Inf_Oper_R
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- -6 18 50 Supp_Motor_Area_L
7
- -34 -52 56 Parietal_Inf_L
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- 32 -52 50 Parietal_Inf_R
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- 32 6 58 Frontal_Mid_R
junifer/data/coordinates/VOIs/meta/PhysioStress_VOIs.txt DELETED
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- 38.0 18.0 0.0 rIns
2
- 52.0 12.0 -4.0 rSTG
3
- 60.0 6.0 2.0 rTP
4
- 22.0 0.0 -4.0 rPall
5
- -38.0 14.0 4.0 lIns
6
- -58.0 0.0 6.0 lOP4
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- -20.0 6.0 2.0 lPut
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- 4.0 6.0 46.0 rSMA
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- 0.0 14.0 36.0 lMCC
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- -42.0 -18.0 18.0 lOP3
11
- -54.0 -24.0 24.0 lSMG
12
- -36.0 -20.0 2.0 lIns
13
- -14.0 -12.0 10.0 lTh
14
- 10.0 -18.0 4.0 rTh
15
- 56.0 -24.0 24.0 lSMG
16
- 44.0 -14.0 16.0 rOP3
17
- 38.0 50.0 12.0 rMFG
18
- -24.0 -66.0 -26.0 lCb
junifer/data/coordinates/VOIs/meta/Power2011_MNI_VOIs.txt DELETED
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- -25 -98 -12 1
2
- 27 -97 -13 2
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- 24 32 -18 3
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- -56 -45 -24 4
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- 8 41 -24 5
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- -21 -22 -20 6
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- 17 -28 -17 7
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- -37 -29 -26 8
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- 65 -24 -19 9
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- 52 -34 -27 10
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- 55 -31 -17 11
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- 34 38 -12 12
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- -7 -52 61 13
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- -14 -18 40 14
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- 0 -15 47 15
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- 10 -2 45 16
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- -7 -21 65 17
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- -7 -33 72 18
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- 13 -33 75 19
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- -54 -23 43 20
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- 29 -17 71 21
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- 10 -46 73 22
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- -23 -30 72 23
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- -40 -19 54 24
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- 29 -39 59 25
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- 50 -20 42 26
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- -38 -27 69 27
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- 20 -29 60 28
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- 44 -8 57 29
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- 10 -17 74 31
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- 22 -42 69 32
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- -45 -32 47 33
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- -21 -31 61 34
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- -13 -17 75 35
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- 42 -20 55 36
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- -38 -15 69 37
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- -16 -46 73 38
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- 2 -28 60 39
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- 3 -17 58 40
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