hillclimber 0.1.6__cp314-cp314t-manylinux_2_27_aarch64.manylinux_2_28_aarch64.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- hillclimber/__init__.py +41 -0
- hillclimber/actions.py +53 -0
- hillclimber/analysis.py +590 -0
- hillclimber/biases.py +293 -0
- hillclimber/calc.py +22 -0
- hillclimber/cvs.py +1070 -0
- hillclimber/interfaces.py +133 -0
- hillclimber/metadynamics.py +416 -0
- hillclimber/nodes.py +6 -0
- hillclimber/opes.py +359 -0
- hillclimber/pycv.py +362 -0
- hillclimber/selectors.py +230 -0
- hillclimber/virtual_atoms.py +341 -0
- hillclimber-0.1.6.dist-info/METADATA +325 -0
- hillclimber-0.1.6.dist-info/RECORD +475 -0
- hillclimber-0.1.6.dist-info/WHEEL +6 -0
- hillclimber-0.1.6.dist-info/entry_points.txt +8 -0
- hillclimber-0.1.6.dist-info/licenses/LICENSE +165 -0
- hillclimber-0.1.6.dist-info/sboms/auditwheel.cdx.json +1 -0
- hillclimber.libs/libgomp-a49a47f9.so.1.0.0 +0 -0
- plumed/__init__.py +104 -0
- plumed/_lib/bin/plumed +0 -0
- plumed/_lib/bin/plumed-config +9 -0
- plumed/_lib/bin/plumed-patch +9 -0
- plumed/_lib/include/plumed/adjmat/AdjacencyMatrixBase.h +659 -0
- plumed/_lib/include/plumed/adjmat/ContactMatrix.h +59 -0
- plumed/_lib/include/plumed/asmjit/arch.h +228 -0
- plumed/_lib/include/plumed/asmjit/arm.h +43 -0
- plumed/_lib/include/plumed/asmjit/asmjit.h +69 -0
- plumed/_lib/include/plumed/asmjit/asmjit_apibegin.h +143 -0
- plumed/_lib/include/plumed/asmjit/asmjit_apiend.h +93 -0
- plumed/_lib/include/plumed/asmjit/asmjit_build.h +971 -0
- plumed/_lib/include/plumed/asmjit/assembler.h +183 -0
- plumed/_lib/include/plumed/asmjit/base.h +56 -0
- plumed/_lib/include/plumed/asmjit/codebuilder.h +944 -0
- plumed/_lib/include/plumed/asmjit/codecompiler.h +767 -0
- plumed/_lib/include/plumed/asmjit/codeemitter.h +528 -0
- plumed/_lib/include/plumed/asmjit/codeholder.h +777 -0
- plumed/_lib/include/plumed/asmjit/constpool.h +286 -0
- plumed/_lib/include/plumed/asmjit/cpuinfo.h +402 -0
- plumed/_lib/include/plumed/asmjit/func.h +1327 -0
- plumed/_lib/include/plumed/asmjit/globals.h +370 -0
- plumed/_lib/include/plumed/asmjit/inst.h +137 -0
- plumed/_lib/include/plumed/asmjit/logging.h +317 -0
- plumed/_lib/include/plumed/asmjit/misc_p.h +103 -0
- plumed/_lib/include/plumed/asmjit/moved_string.h +318 -0
- plumed/_lib/include/plumed/asmjit/operand.h +1599 -0
- plumed/_lib/include/plumed/asmjit/osutils.h +207 -0
- plumed/_lib/include/plumed/asmjit/regalloc_p.h +597 -0
- plumed/_lib/include/plumed/asmjit/runtime.h +227 -0
- plumed/_lib/include/plumed/asmjit/simdtypes.h +1104 -0
- plumed/_lib/include/plumed/asmjit/utils.h +1387 -0
- plumed/_lib/include/plumed/asmjit/vmem.h +183 -0
- plumed/_lib/include/plumed/asmjit/x86.h +45 -0
- plumed/_lib/include/plumed/asmjit/x86assembler.h +125 -0
- plumed/_lib/include/plumed/asmjit/x86builder.h +117 -0
- plumed/_lib/include/plumed/asmjit/x86compiler.h +322 -0
- plumed/_lib/include/plumed/asmjit/x86emitter.h +5149 -0
- plumed/_lib/include/plumed/asmjit/x86globals.h +535 -0
- plumed/_lib/include/plumed/asmjit/x86inst.h +2547 -0
- plumed/_lib/include/plumed/asmjit/x86instimpl_p.h +74 -0
- plumed/_lib/include/plumed/asmjit/x86internal_p.h +108 -0
- plumed/_lib/include/plumed/asmjit/x86logging_p.h +92 -0
- plumed/_lib/include/plumed/asmjit/x86misc.h +417 -0
- plumed/_lib/include/plumed/asmjit/x86operand.h +1133 -0
- plumed/_lib/include/plumed/asmjit/x86regalloc_p.h +734 -0
- plumed/_lib/include/plumed/asmjit/zone.h +1157 -0
- plumed/_lib/include/plumed/bias/Bias.h +82 -0
- plumed/_lib/include/plumed/bias/ReweightBase.h +58 -0
- plumed/_lib/include/plumed/blas/blas.h +253 -0
- plumed/_lib/include/plumed/blas/def_external.h +61 -0
- plumed/_lib/include/plumed/blas/def_internal.h +97 -0
- plumed/_lib/include/plumed/blas/real.h +49 -0
- plumed/_lib/include/plumed/cltools/CLTool.h +32 -0
- plumed/_lib/include/plumed/clusters/ClusteringBase.h +70 -0
- plumed/_lib/include/plumed/colvar/Colvar.h +32 -0
- plumed/_lib/include/plumed/colvar/ColvarInput.h +68 -0
- plumed/_lib/include/plumed/colvar/ColvarShortcut.h +81 -0
- plumed/_lib/include/plumed/colvar/CoordinationBase.h +52 -0
- plumed/_lib/include/plumed/colvar/MultiColvarTemplate.h +333 -0
- plumed/_lib/include/plumed/colvar/PathMSDBase.h +101 -0
- plumed/_lib/include/plumed/colvar/RMSDVector.h +78 -0
- plumed/_lib/include/plumed/config/Config.h +118 -0
- plumed/_lib/include/plumed/config/version.h +9 -0
- plumed/_lib/include/plumed/contour/ContourFindingObject.h +87 -0
- plumed/_lib/include/plumed/contour/DistanceFromContourBase.h +82 -0
- plumed/_lib/include/plumed/contour/FindContour.h +67 -0
- plumed/_lib/include/plumed/core/Action.h +540 -0
- plumed/_lib/include/plumed/core/ActionAnyorder.h +48 -0
- plumed/_lib/include/plumed/core/ActionAtomistic.h +343 -0
- plumed/_lib/include/plumed/core/ActionForInterface.h +99 -0
- plumed/_lib/include/plumed/core/ActionPilot.h +57 -0
- plumed/_lib/include/plumed/core/ActionRegister.h +124 -0
- plumed/_lib/include/plumed/core/ActionSet.h +163 -0
- plumed/_lib/include/plumed/core/ActionSetup.h +48 -0
- plumed/_lib/include/plumed/core/ActionShortcut.h +73 -0
- plumed/_lib/include/plumed/core/ActionToGetData.h +59 -0
- plumed/_lib/include/plumed/core/ActionToPutData.h +101 -0
- plumed/_lib/include/plumed/core/ActionWithArguments.h +140 -0
- plumed/_lib/include/plumed/core/ActionWithMatrix.h +87 -0
- plumed/_lib/include/plumed/core/ActionWithValue.h +258 -0
- plumed/_lib/include/plumed/core/ActionWithVector.h +94 -0
- plumed/_lib/include/plumed/core/ActionWithVirtualAtom.h +123 -0
- plumed/_lib/include/plumed/core/CLTool.h +177 -0
- plumed/_lib/include/plumed/core/CLToolMain.h +102 -0
- plumed/_lib/include/plumed/core/CLToolRegister.h +108 -0
- plumed/_lib/include/plumed/core/Colvar.h +115 -0
- plumed/_lib/include/plumed/core/DataPassingObject.h +94 -0
- plumed/_lib/include/plumed/core/DataPassingTools.h +54 -0
- plumed/_lib/include/plumed/core/DomainDecomposition.h +120 -0
- plumed/_lib/include/plumed/core/ExchangePatterns.h +47 -0
- plumed/_lib/include/plumed/core/FlexibleBin.h +63 -0
- plumed/_lib/include/plumed/core/GREX.h +61 -0
- plumed/_lib/include/plumed/core/GenericMolInfo.h +89 -0
- plumed/_lib/include/plumed/core/Group.h +41 -0
- plumed/_lib/include/plumed/core/ModuleMap.h +30 -0
- plumed/_lib/include/plumed/core/ParallelTaskManager.h +1023 -0
- plumed/_lib/include/plumed/core/PbcAction.h +61 -0
- plumed/_lib/include/plumed/core/PlumedMain.h +632 -0
- plumed/_lib/include/plumed/core/PlumedMainInitializer.h +118 -0
- plumed/_lib/include/plumed/core/RegisterBase.h +340 -0
- plumed/_lib/include/plumed/core/TargetDist.h +48 -0
- plumed/_lib/include/plumed/core/Value.h +547 -0
- plumed/_lib/include/plumed/core/WithCmd.h +93 -0
- plumed/_lib/include/plumed/dimred/SMACOF.h +55 -0
- plumed/_lib/include/plumed/drr/DRR.h +383 -0
- plumed/_lib/include/plumed/drr/colvar_UIestimator.h +777 -0
- plumed/_lib/include/plumed/fisst/legendre_rule_fast.h +44 -0
- plumed/_lib/include/plumed/function/Custom.h +54 -0
- plumed/_lib/include/plumed/function/Function.h +85 -0
- plumed/_lib/include/plumed/function/FunctionOfMatrix.h +368 -0
- plumed/_lib/include/plumed/function/FunctionOfScalar.h +135 -0
- plumed/_lib/include/plumed/function/FunctionOfVector.h +296 -0
- plumed/_lib/include/plumed/function/FunctionSetup.h +180 -0
- plumed/_lib/include/plumed/function/FunctionShortcut.h +130 -0
- plumed/_lib/include/plumed/function/FunctionWithSingleArgument.h +165 -0
- plumed/_lib/include/plumed/gridtools/ActionWithGrid.h +43 -0
- plumed/_lib/include/plumed/gridtools/EvaluateGridFunction.h +99 -0
- plumed/_lib/include/plumed/gridtools/FunctionOfGrid.h +295 -0
- plumed/_lib/include/plumed/gridtools/GridCoordinatesObject.h +179 -0
- plumed/_lib/include/plumed/gridtools/GridSearch.h +135 -0
- plumed/_lib/include/plumed/gridtools/Interpolator.h +45 -0
- plumed/_lib/include/plumed/gridtools/KDE.h +455 -0
- plumed/_lib/include/plumed/gridtools/RDF.h +40 -0
- plumed/_lib/include/plumed/gridtools/SumOfKernels.h +219 -0
- plumed/_lib/include/plumed/isdb/MetainferenceBase.h +398 -0
- plumed/_lib/include/plumed/lapack/def_external.h +207 -0
- plumed/_lib/include/plumed/lapack/def_internal.h +388 -0
- plumed/_lib/include/plumed/lapack/lapack.h +899 -0
- plumed/_lib/include/plumed/lapack/lapack_limits.h +79 -0
- plumed/_lib/include/plumed/lapack/real.h +50 -0
- plumed/_lib/include/plumed/lepton/CompiledExpression.h +164 -0
- plumed/_lib/include/plumed/lepton/CustomFunction.h +143 -0
- plumed/_lib/include/plumed/lepton/Exception.h +93 -0
- plumed/_lib/include/plumed/lepton/ExpressionProgram.h +137 -0
- plumed/_lib/include/plumed/lepton/ExpressionTreeNode.h +145 -0
- plumed/_lib/include/plumed/lepton/Lepton.h +85 -0
- plumed/_lib/include/plumed/lepton/MSVC_erfc.h +123 -0
- plumed/_lib/include/plumed/lepton/Operation.h +1302 -0
- plumed/_lib/include/plumed/lepton/ParsedExpression.h +165 -0
- plumed/_lib/include/plumed/lepton/Parser.h +111 -0
- plumed/_lib/include/plumed/lepton/windowsIncludes.h +73 -0
- plumed/_lib/include/plumed/mapping/Path.h +44 -0
- plumed/_lib/include/plumed/mapping/PathProjectionCalculator.h +57 -0
- plumed/_lib/include/plumed/matrixtools/MatrixOperationBase.h +54 -0
- plumed/_lib/include/plumed/matrixtools/MatrixTimesMatrix.h +309 -0
- plumed/_lib/include/plumed/matrixtools/MatrixTimesVectorBase.h +365 -0
- plumed/_lib/include/plumed/matrixtools/OuterProduct.h +238 -0
- plumed/_lib/include/plumed/maze/Core.h +65 -0
- plumed/_lib/include/plumed/maze/Loss.h +86 -0
- plumed/_lib/include/plumed/maze/Member.h +66 -0
- plumed/_lib/include/plumed/maze/Memetic.h +799 -0
- plumed/_lib/include/plumed/maze/Optimizer.h +357 -0
- plumed/_lib/include/plumed/maze/Random_MT.h +156 -0
- plumed/_lib/include/plumed/maze/Tools.h +183 -0
- plumed/_lib/include/plumed/metatomic/vesin.h +188 -0
- plumed/_lib/include/plumed/molfile/Gromacs.h +2013 -0
- plumed/_lib/include/plumed/molfile/endianswap.h +217 -0
- plumed/_lib/include/plumed/molfile/fastio.h +683 -0
- plumed/_lib/include/plumed/molfile/largefiles.h +78 -0
- plumed/_lib/include/plumed/molfile/libmolfile_plugin.h +77 -0
- plumed/_lib/include/plumed/molfile/molfile_plugin.h +1034 -0
- plumed/_lib/include/plumed/molfile/periodic_table.h +248 -0
- plumed/_lib/include/plumed/molfile/readpdb.h +447 -0
- plumed/_lib/include/plumed/molfile/vmdplugin.h +236 -0
- plumed/_lib/include/plumed/multicolvar/MultiColvarShortcuts.h +45 -0
- plumed/_lib/include/plumed/opes/ExpansionCVs.h +79 -0
- plumed/_lib/include/plumed/sasa/Sasa.h +32 -0
- plumed/_lib/include/plumed/secondarystructure/SecondaryStructureBase.h +372 -0
- plumed/_lib/include/plumed/setup/ActionSetup.h +25 -0
- plumed/_lib/include/plumed/small_vector/small_vector.h +6114 -0
- plumed/_lib/include/plumed/symfunc/CoordinationNumbers.h +41 -0
- plumed/_lib/include/plumed/tools/Angle.h +52 -0
- plumed/_lib/include/plumed/tools/AtomDistribution.h +138 -0
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- plumed/_lib/include/plumed/tools/BiasRepresentation.h +106 -0
- plumed/_lib/include/plumed/tools/BitmaskEnum.h +167 -0
- plumed/_lib/include/plumed/tools/Brent1DRootSearch.h +159 -0
- plumed/_lib/include/plumed/tools/CheckInRange.h +44 -0
- plumed/_lib/include/plumed/tools/Citations.h +74 -0
- plumed/_lib/include/plumed/tools/ColvarOutput.h +118 -0
- plumed/_lib/include/plumed/tools/Communicator.h +316 -0
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- plumed/_lib/include/plumed/tools/Grid.h +638 -0
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- plumed/_lib/include/plumed/tools/KernelFunctions.h +113 -0
- plumed/_lib/include/plumed/tools/Keywords.h +380 -0
- plumed/_lib/include/plumed/tools/LatticeReduction.h +66 -0
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- plumed/_lib/include/plumed/tools/Log.h +41 -0
- plumed/_lib/include/plumed/tools/LoopUnroller.h +163 -0
- plumed/_lib/include/plumed/tools/Matrix.h +721 -0
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#/a Makefile for Modules
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additional_kpoints.o \
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autopilot.o \
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basic_algebra_routines.o \
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becmod.o \
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dist.o \
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kind.o \
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noncol.o \
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parameters.o \
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+
plugin_flags.o \
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62
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+
plugin_arguments.o \
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63
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+
plugin_variables.o \
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|
64
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+
pw_dot.o \
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|
65
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+
qmmm.o \
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|
66
|
+
random_numbers.o \
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|
67
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+
read_cards.o \
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|
68
|
+
read_input.o \
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|
69
|
+
read_namelists.o \
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70
|
+
read_pseudo.o \
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|
71
|
+
recvec.o \
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|
72
|
+
recvec_subs.o \
|
|
73
|
+
run_info.o \
|
|
74
|
+
space_group.o \
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|
75
|
+
set_para_diag.o \
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|
76
|
+
set_signal.o \
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|
77
|
+
set_vdw_corr.o \
|
|
78
|
+
setqf.o \
|
|
79
|
+
timestep.o\
|
|
80
|
+
tsvdw.o\
|
|
81
|
+
mbdlib.o\
|
|
82
|
+
version.o \
|
|
83
|
+
wannier_gw.o\
|
|
84
|
+
wannier_new.o \
|
|
85
|
+
wavefunctions.o \
|
|
86
|
+
ws_base.o \
|
|
87
|
+
xc_vdW_DF.o \
|
|
88
|
+
xc_rVV10.o \
|
|
89
|
+
io_base.o \
|
|
90
|
+
qes_types_module.o \
|
|
91
|
+
qes_libs_module.o \
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|
92
|
+
qes_write_module.o \
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|
93
|
+
qes_read_module.o \
|
|
94
|
+
qes_reset_module.o \
|
|
95
|
+
qes_init_module.o \
|
|
96
|
+
qes_bcast_module.o \
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|
97
|
+
qexsd.o \
|
|
98
|
+
qexsd_copy.o \
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|
99
|
+
qexsd_init.o \
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|
100
|
+
qexsd_input.o \
|
|
101
|
+
hdf5_qe.o\
|
|
102
|
+
qeh5_module.o\
|
|
103
|
+
fox_init_module.o \
|
|
104
|
+
xsf.o \
|
|
105
|
+
wyckoff.o \
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|
106
|
+
wypos.o \
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|
107
|
+
zvscal.o \
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|
108
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+
wave_gauge.o \
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109
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+
plumed.o
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110
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+
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111
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+
# list of RISM's modules
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|
112
|
+
|
|
113
|
+
RISMLIB = \
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|
114
|
+
allocate_fft_3drism.o \
|
|
115
|
+
chempot.o \
|
|
116
|
+
chempot_lauerism.o \
|
|
117
|
+
closure.o \
|
|
118
|
+
corrdipole_laue.o \
|
|
119
|
+
correctat0_vv.o \
|
|
120
|
+
corrgxy0_laue.o \
|
|
121
|
+
cryst_to_car_2d.o \
|
|
122
|
+
data_structure_3drism.o \
|
|
123
|
+
do_1drism.o \
|
|
124
|
+
do_3drism.o \
|
|
125
|
+
do_lauerism.o \
|
|
126
|
+
eqn_1drism.o \
|
|
127
|
+
eqn_3drism.o \
|
|
128
|
+
eqn_lauedipole.o \
|
|
129
|
+
eqn_lauegxy0.o \
|
|
130
|
+
eqn_lauelong.o \
|
|
131
|
+
eqn_lauerism.o \
|
|
132
|
+
eqn_laueshort.o \
|
|
133
|
+
eqn_lauevoid.o \
|
|
134
|
+
err_rism.o \
|
|
135
|
+
guess_3drism.o \
|
|
136
|
+
init_1drism.o \
|
|
137
|
+
init_3drism.o \
|
|
138
|
+
input_1drism.o \
|
|
139
|
+
input_3drism.o \
|
|
140
|
+
io_rism_xml.o \
|
|
141
|
+
lauefft.o \
|
|
142
|
+
lauefft_subs.o \
|
|
143
|
+
lj_forcefield.o \
|
|
144
|
+
lj_solute.o \
|
|
145
|
+
molecorr_vv.o \
|
|
146
|
+
molebridge_vv.o \
|
|
147
|
+
molecule_const.o \
|
|
148
|
+
molecule_types.o \
|
|
149
|
+
mp_rism.o \
|
|
150
|
+
mp_swap_ax_rism.o \
|
|
151
|
+
normalize_lauerism.o \
|
|
152
|
+
plot_rism.o \
|
|
153
|
+
potential_3drism.o \
|
|
154
|
+
potential_esm.o \
|
|
155
|
+
potential_vv.o \
|
|
156
|
+
print_chempot_3drism.o \
|
|
157
|
+
print_chempot_lauerism.o \
|
|
158
|
+
print_chempot_vv.o \
|
|
159
|
+
print_corr_vv.o \
|
|
160
|
+
print_solvavg.o \
|
|
161
|
+
radfft.o \
|
|
162
|
+
read_mol.o \
|
|
163
|
+
read_solv.o \
|
|
164
|
+
recvec_3drism.o \
|
|
165
|
+
rism.o \
|
|
166
|
+
rism1d_facade.o \
|
|
167
|
+
rism3d_facade.o \
|
|
168
|
+
rms_residual.o \
|
|
169
|
+
scale_fft_3drism.o \
|
|
170
|
+
scale_fft_lauerism.o \
|
|
171
|
+
solute.o \
|
|
172
|
+
solvation_3drism.o \
|
|
173
|
+
solvation_esm.o \
|
|
174
|
+
solvation_force.o \
|
|
175
|
+
solvation_lauerism.o \
|
|
176
|
+
solvation_pbc.o \
|
|
177
|
+
solvation_stress.o \
|
|
178
|
+
solvavg.o \
|
|
179
|
+
solvmol.o \
|
|
180
|
+
summary_1drism.o \
|
|
181
|
+
summary_3drism.o \
|
|
182
|
+
suscept_g0.o \
|
|
183
|
+
suscept_laue.o \
|
|
184
|
+
suscept_laueint.o \
|
|
185
|
+
suscept_vv.o \
|
|
186
|
+
write_rism_type.o \
|
|
187
|
+
xml_io_rism.o
|
|
188
|
+
|
|
189
|
+
# list of subroutines and functions (not modules) previously found in flib/clib
|
|
190
|
+
|
|
191
|
+
OBJS = \
|
|
192
|
+
atom_weight.o \
|
|
193
|
+
capital.o \
|
|
194
|
+
cryst_to_car.o \
|
|
195
|
+
expint.o \
|
|
196
|
+
generate_k_along_lines.o \
|
|
197
|
+
has_xml.o \
|
|
198
|
+
inpfile.o \
|
|
199
|
+
int_to_char.o \
|
|
200
|
+
latgen.o \
|
|
201
|
+
linpack.o \
|
|
202
|
+
matches.o \
|
|
203
|
+
plot_io.o \
|
|
204
|
+
radial_gradients.o \
|
|
205
|
+
rgen.o \
|
|
206
|
+
recips.o \
|
|
207
|
+
remove_tot_torque.o \
|
|
208
|
+
sort.o \
|
|
209
|
+
trimcheck.o \
|
|
210
|
+
test_input_file.o \
|
|
211
|
+
date_and_tim.o \
|
|
212
|
+
volume.o \
|
|
213
|
+
wgauss.o \
|
|
214
|
+
w0gauss.o \
|
|
215
|
+
w1gauss.o \
|
|
216
|
+
deviatoric.o \
|
|
217
|
+
customize_signals.o \
|
|
218
|
+
qmmm_aux.o \
|
|
219
|
+
sockets.o \
|
|
220
|
+
stack.o
|
|
221
|
+
|
|
222
|
+
# GPU versions of modules
|
|
223
|
+
MODULES += \
|
|
224
|
+
wavefunctions_gpu.o \
|
|
225
|
+
becmod_gpu.o \
|
|
226
|
+
becmod_subs_gpu.o \
|
|
227
|
+
cuda_subroutines.o \
|
|
228
|
+
random_numbers_gpu.o
|
|
229
|
+
|
|
230
|
+
TLDEPS= libfox libla libfft libutil libmbd librxc libupf
|
|
231
|
+
|
|
232
|
+
all : libqemod.a
|
|
233
|
+
|
|
234
|
+
libqemod.a: $(MODULES) $(OBJS) $(RISMLIB)
|
|
235
|
+
$(AR) $(ARFLAGS) $@ $?
|
|
236
|
+
$(RANLIB) $@
|
|
237
|
+
|
|
238
|
+
tldeps :
|
|
239
|
+
if test -n "$(TLDEPS)" ; then \
|
|
240
|
+
( cd ../.. ; $(MAKE) $(TLDEPS) || exit 1 ) ; fi
|
|
241
|
+
|
|
242
|
+
|
|
243
|
+
clean :
|
|
244
|
+
- /bin/rm -f *.o *.a *.d *.i *~ *_tmp.f90 *.mod *.L plumed.f90
|
|
245
|
+
|
|
246
|
+
plumed.f90:
|
|
247
|
+
cp $(PLUMED_FORTRAN) plumed.f90
|
|
248
|
+
|
|
249
|
+
include make.depend
|
|
@@ -0,0 +1,244 @@
|
|
|
1
|
+
#/a Makefile for Modules
|
|
2
|
+
|
|
3
|
+
include ../make.inc
|
|
4
|
+
|
|
5
|
+
# location of needed modules
|
|
6
|
+
MODFLAGS=$(BASEMOD_FLAGS)
|
|
7
|
+
|
|
8
|
+
# list of modules
|
|
9
|
+
|
|
10
|
+
MODULES = \
|
|
11
|
+
additional_kpoints.o \
|
|
12
|
+
autopilot.o \
|
|
13
|
+
basic_algebra_routines.o \
|
|
14
|
+
becmod.o \
|
|
15
|
+
bfgs_module.o \
|
|
16
|
+
bspline.o \
|
|
17
|
+
bz_form.o \
|
|
18
|
+
cell_base.o \
|
|
19
|
+
check_stop.o \
|
|
20
|
+
command_line_options.o \
|
|
21
|
+
compute_dipole.o \
|
|
22
|
+
constants.o \
|
|
23
|
+
constraints_module.o \
|
|
24
|
+
control_flags.o \
|
|
25
|
+
coulomb_vcut.o \
|
|
26
|
+
dist.o \
|
|
27
|
+
electrons_base.o \
|
|
28
|
+
environ_base_module.o \
|
|
29
|
+
environment.o \
|
|
30
|
+
extffield.o \
|
|
31
|
+
fd_gradient.o \
|
|
32
|
+
fft_base.o \
|
|
33
|
+
fft_rho.o \
|
|
34
|
+
fft_wave.o \
|
|
35
|
+
fsockets.o \
|
|
36
|
+
funct.o \
|
|
37
|
+
generate_function.o \
|
|
38
|
+
gradutils.o \
|
|
39
|
+
gvecw.o \
|
|
40
|
+
input_parameters.o \
|
|
41
|
+
invmat.o \
|
|
42
|
+
io_files.o \
|
|
43
|
+
io_global.o \
|
|
44
|
+
ions_base.o \
|
|
45
|
+
kind.o \
|
|
46
|
+
lmdif.o \
|
|
47
|
+
mdiis.o \
|
|
48
|
+
mm_dispersion.o \
|
|
49
|
+
mp_bands.o \
|
|
50
|
+
mp_exx.o \
|
|
51
|
+
mp_global.o \
|
|
52
|
+
mp_images.o \
|
|
53
|
+
mp_pools.o \
|
|
54
|
+
mp_wave.o \
|
|
55
|
+
mp_world.o \
|
|
56
|
+
noncol.o \
|
|
57
|
+
open_close_input_file.o \
|
|
58
|
+
parameters.o \
|
|
59
|
+
parser.o \
|
|
60
|
+
plugin_flags.o \
|
|
61
|
+
plugin_arguments.o \
|
|
62
|
+
plugin_variables.o \
|
|
63
|
+
pw_dot.o \
|
|
64
|
+
qmmm.o \
|
|
65
|
+
random_numbers.o \
|
|
66
|
+
read_cards.o \
|
|
67
|
+
read_input.o \
|
|
68
|
+
read_namelists.o \
|
|
69
|
+
read_pseudo.o \
|
|
70
|
+
recvec.o \
|
|
71
|
+
recvec_subs.o \
|
|
72
|
+
run_info.o \
|
|
73
|
+
space_group.o \
|
|
74
|
+
set_para_diag.o \
|
|
75
|
+
set_signal.o \
|
|
76
|
+
set_vdw_corr.o \
|
|
77
|
+
setqf.o \
|
|
78
|
+
timestep.o\
|
|
79
|
+
tsvdw.o\
|
|
80
|
+
mbdlib.o\
|
|
81
|
+
version.o \
|
|
82
|
+
wannier_gw.o\
|
|
83
|
+
wannier_new.o \
|
|
84
|
+
wavefunctions.o \
|
|
85
|
+
ws_base.o \
|
|
86
|
+
xc_vdW_DF.o \
|
|
87
|
+
xc_rVV10.o \
|
|
88
|
+
io_base.o \
|
|
89
|
+
qes_types_module.o \
|
|
90
|
+
qes_libs_module.o \
|
|
91
|
+
qes_write_module.o \
|
|
92
|
+
qes_read_module.o \
|
|
93
|
+
qes_reset_module.o \
|
|
94
|
+
qes_init_module.o \
|
|
95
|
+
qes_bcast_module.o \
|
|
96
|
+
qexsd.o \
|
|
97
|
+
qexsd_copy.o \
|
|
98
|
+
qexsd_init.o \
|
|
99
|
+
qexsd_input.o \
|
|
100
|
+
hdf5_qe.o\
|
|
101
|
+
qeh5_module.o\
|
|
102
|
+
fox_init_module.o \
|
|
103
|
+
xsf.o \
|
|
104
|
+
wyckoff.o \
|
|
105
|
+
wypos.o \
|
|
106
|
+
zvscal.o \
|
|
107
|
+
wave_gauge.o
|
|
108
|
+
|
|
109
|
+
# list of RISM's modules
|
|
110
|
+
|
|
111
|
+
RISMLIB = \
|
|
112
|
+
allocate_fft_3drism.o \
|
|
113
|
+
chempot.o \
|
|
114
|
+
chempot_lauerism.o \
|
|
115
|
+
closure.o \
|
|
116
|
+
corrdipole_laue.o \
|
|
117
|
+
correctat0_vv.o \
|
|
118
|
+
corrgxy0_laue.o \
|
|
119
|
+
cryst_to_car_2d.o \
|
|
120
|
+
data_structure_3drism.o \
|
|
121
|
+
do_1drism.o \
|
|
122
|
+
do_3drism.o \
|
|
123
|
+
do_lauerism.o \
|
|
124
|
+
eqn_1drism.o \
|
|
125
|
+
eqn_3drism.o \
|
|
126
|
+
eqn_lauedipole.o \
|
|
127
|
+
eqn_lauegxy0.o \
|
|
128
|
+
eqn_lauelong.o \
|
|
129
|
+
eqn_lauerism.o \
|
|
130
|
+
eqn_laueshort.o \
|
|
131
|
+
eqn_lauevoid.o \
|
|
132
|
+
err_rism.o \
|
|
133
|
+
guess_3drism.o \
|
|
134
|
+
init_1drism.o \
|
|
135
|
+
init_3drism.o \
|
|
136
|
+
input_1drism.o \
|
|
137
|
+
input_3drism.o \
|
|
138
|
+
io_rism_xml.o \
|
|
139
|
+
lauefft.o \
|
|
140
|
+
lauefft_subs.o \
|
|
141
|
+
lj_forcefield.o \
|
|
142
|
+
lj_solute.o \
|
|
143
|
+
molecorr_vv.o \
|
|
144
|
+
molebridge_vv.o \
|
|
145
|
+
molecule_const.o \
|
|
146
|
+
molecule_types.o \
|
|
147
|
+
mp_rism.o \
|
|
148
|
+
mp_swap_ax_rism.o \
|
|
149
|
+
normalize_lauerism.o \
|
|
150
|
+
plot_rism.o \
|
|
151
|
+
potential_3drism.o \
|
|
152
|
+
potential_esm.o \
|
|
153
|
+
potential_vv.o \
|
|
154
|
+
print_chempot_3drism.o \
|
|
155
|
+
print_chempot_lauerism.o \
|
|
156
|
+
print_chempot_vv.o \
|
|
157
|
+
print_corr_vv.o \
|
|
158
|
+
print_solvavg.o \
|
|
159
|
+
radfft.o \
|
|
160
|
+
read_mol.o \
|
|
161
|
+
read_solv.o \
|
|
162
|
+
recvec_3drism.o \
|
|
163
|
+
rism.o \
|
|
164
|
+
rism1d_facade.o \
|
|
165
|
+
rism3d_facade.o \
|
|
166
|
+
rms_residual.o \
|
|
167
|
+
scale_fft_3drism.o \
|
|
168
|
+
scale_fft_lauerism.o \
|
|
169
|
+
solute.o \
|
|
170
|
+
solvation_3drism.o \
|
|
171
|
+
solvation_esm.o \
|
|
172
|
+
solvation_force.o \
|
|
173
|
+
solvation_lauerism.o \
|
|
174
|
+
solvation_pbc.o \
|
|
175
|
+
solvation_stress.o \
|
|
176
|
+
solvavg.o \
|
|
177
|
+
solvmol.o \
|
|
178
|
+
summary_1drism.o \
|
|
179
|
+
summary_3drism.o \
|
|
180
|
+
suscept_g0.o \
|
|
181
|
+
suscept_laue.o \
|
|
182
|
+
suscept_laueint.o \
|
|
183
|
+
suscept_vv.o \
|
|
184
|
+
write_rism_type.o \
|
|
185
|
+
xml_io_rism.o
|
|
186
|
+
|
|
187
|
+
# list of subroutines and functions (not modules) previously found in flib/clib
|
|
188
|
+
|
|
189
|
+
OBJS = \
|
|
190
|
+
atom_weight.o \
|
|
191
|
+
capital.o \
|
|
192
|
+
cryst_to_car.o \
|
|
193
|
+
expint.o \
|
|
194
|
+
generate_k_along_lines.o \
|
|
195
|
+
has_xml.o \
|
|
196
|
+
inpfile.o \
|
|
197
|
+
int_to_char.o \
|
|
198
|
+
latgen.o \
|
|
199
|
+
linpack.o \
|
|
200
|
+
matches.o \
|
|
201
|
+
plot_io.o \
|
|
202
|
+
radial_gradients.o \
|
|
203
|
+
rgen.o \
|
|
204
|
+
recips.o \
|
|
205
|
+
remove_tot_torque.o \
|
|
206
|
+
sort.o \
|
|
207
|
+
trimcheck.o \
|
|
208
|
+
test_input_file.o \
|
|
209
|
+
date_and_tim.o \
|
|
210
|
+
volume.o \
|
|
211
|
+
wgauss.o \
|
|
212
|
+
w0gauss.o \
|
|
213
|
+
w1gauss.o \
|
|
214
|
+
deviatoric.o \
|
|
215
|
+
customize_signals.o \
|
|
216
|
+
qmmm_aux.o \
|
|
217
|
+
sockets.o \
|
|
218
|
+
stack.o
|
|
219
|
+
|
|
220
|
+
# GPU versions of modules
|
|
221
|
+
MODULES += \
|
|
222
|
+
wavefunctions_gpu.o \
|
|
223
|
+
becmod_gpu.o \
|
|
224
|
+
becmod_subs_gpu.o \
|
|
225
|
+
cuda_subroutines.o \
|
|
226
|
+
random_numbers_gpu.o
|
|
227
|
+
|
|
228
|
+
TLDEPS= libfox libla libfft libutil libmbd librxc libupf
|
|
229
|
+
|
|
230
|
+
all : libqemod.a
|
|
231
|
+
|
|
232
|
+
libqemod.a: $(MODULES) $(OBJS) $(RISMLIB)
|
|
233
|
+
$(AR) $(ARFLAGS) $@ $?
|
|
234
|
+
$(RANLIB) $@
|
|
235
|
+
|
|
236
|
+
tldeps :
|
|
237
|
+
if test -n "$(TLDEPS)" ; then \
|
|
238
|
+
( cd ../.. ; $(MAKE) $(TLDEPS) || exit 1 ) ; fi
|
|
239
|
+
|
|
240
|
+
|
|
241
|
+
clean :
|
|
242
|
+
- /bin/rm -f *.o *.a *.d *.i *~ *_tmp.f90 *.mod *.L
|
|
243
|
+
|
|
244
|
+
include make.depend
|