hillclimber 0.1.6__cp314-cp314t-manylinux_2_27_aarch64.manylinux_2_28_aarch64.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- hillclimber/__init__.py +41 -0
- hillclimber/actions.py +53 -0
- hillclimber/analysis.py +590 -0
- hillclimber/biases.py +293 -0
- hillclimber/calc.py +22 -0
- hillclimber/cvs.py +1070 -0
- hillclimber/interfaces.py +133 -0
- hillclimber/metadynamics.py +416 -0
- hillclimber/nodes.py +6 -0
- hillclimber/opes.py +359 -0
- hillclimber/pycv.py +362 -0
- hillclimber/selectors.py +230 -0
- hillclimber/virtual_atoms.py +341 -0
- hillclimber-0.1.6.dist-info/METADATA +325 -0
- hillclimber-0.1.6.dist-info/RECORD +475 -0
- hillclimber-0.1.6.dist-info/WHEEL +6 -0
- hillclimber-0.1.6.dist-info/entry_points.txt +8 -0
- hillclimber-0.1.6.dist-info/licenses/LICENSE +165 -0
- hillclimber-0.1.6.dist-info/sboms/auditwheel.cdx.json +1 -0
- hillclimber.libs/libgomp-a49a47f9.so.1.0.0 +0 -0
- plumed/__init__.py +104 -0
- plumed/_lib/bin/plumed +0 -0
- plumed/_lib/bin/plumed-config +9 -0
- plumed/_lib/bin/plumed-patch +9 -0
- plumed/_lib/include/plumed/adjmat/AdjacencyMatrixBase.h +659 -0
- plumed/_lib/include/plumed/adjmat/ContactMatrix.h +59 -0
- plumed/_lib/include/plumed/asmjit/arch.h +228 -0
- plumed/_lib/include/plumed/asmjit/arm.h +43 -0
- plumed/_lib/include/plumed/asmjit/asmjit.h +69 -0
- plumed/_lib/include/plumed/asmjit/asmjit_apibegin.h +143 -0
- plumed/_lib/include/plumed/asmjit/asmjit_apiend.h +93 -0
- plumed/_lib/include/plumed/asmjit/asmjit_build.h +971 -0
- plumed/_lib/include/plumed/asmjit/assembler.h +183 -0
- plumed/_lib/include/plumed/asmjit/base.h +56 -0
- plumed/_lib/include/plumed/asmjit/codebuilder.h +944 -0
- plumed/_lib/include/plumed/asmjit/codecompiler.h +767 -0
- plumed/_lib/include/plumed/asmjit/codeemitter.h +528 -0
- plumed/_lib/include/plumed/asmjit/codeholder.h +777 -0
- plumed/_lib/include/plumed/asmjit/constpool.h +286 -0
- plumed/_lib/include/plumed/asmjit/cpuinfo.h +402 -0
- plumed/_lib/include/plumed/asmjit/func.h +1327 -0
- plumed/_lib/include/plumed/asmjit/globals.h +370 -0
- plumed/_lib/include/plumed/asmjit/inst.h +137 -0
- plumed/_lib/include/plumed/asmjit/logging.h +317 -0
- plumed/_lib/include/plumed/asmjit/misc_p.h +103 -0
- plumed/_lib/include/plumed/asmjit/moved_string.h +318 -0
- plumed/_lib/include/plumed/asmjit/operand.h +1599 -0
- plumed/_lib/include/plumed/asmjit/osutils.h +207 -0
- plumed/_lib/include/plumed/asmjit/regalloc_p.h +597 -0
- plumed/_lib/include/plumed/asmjit/runtime.h +227 -0
- plumed/_lib/include/plumed/asmjit/simdtypes.h +1104 -0
- plumed/_lib/include/plumed/asmjit/utils.h +1387 -0
- plumed/_lib/include/plumed/asmjit/vmem.h +183 -0
- plumed/_lib/include/plumed/asmjit/x86.h +45 -0
- plumed/_lib/include/plumed/asmjit/x86assembler.h +125 -0
- plumed/_lib/include/plumed/asmjit/x86builder.h +117 -0
- plumed/_lib/include/plumed/asmjit/x86compiler.h +322 -0
- plumed/_lib/include/plumed/asmjit/x86emitter.h +5149 -0
- plumed/_lib/include/plumed/asmjit/x86globals.h +535 -0
- plumed/_lib/include/plumed/asmjit/x86inst.h +2547 -0
- plumed/_lib/include/plumed/asmjit/x86instimpl_p.h +74 -0
- plumed/_lib/include/plumed/asmjit/x86internal_p.h +108 -0
- plumed/_lib/include/plumed/asmjit/x86logging_p.h +92 -0
- plumed/_lib/include/plumed/asmjit/x86misc.h +417 -0
- plumed/_lib/include/plumed/asmjit/x86operand.h +1133 -0
- plumed/_lib/include/plumed/asmjit/x86regalloc_p.h +734 -0
- plumed/_lib/include/plumed/asmjit/zone.h +1157 -0
- plumed/_lib/include/plumed/bias/Bias.h +82 -0
- plumed/_lib/include/plumed/bias/ReweightBase.h +58 -0
- plumed/_lib/include/plumed/blas/blas.h +253 -0
- plumed/_lib/include/plumed/blas/def_external.h +61 -0
- plumed/_lib/include/plumed/blas/def_internal.h +97 -0
- plumed/_lib/include/plumed/blas/real.h +49 -0
- plumed/_lib/include/plumed/cltools/CLTool.h +32 -0
- plumed/_lib/include/plumed/clusters/ClusteringBase.h +70 -0
- plumed/_lib/include/plumed/colvar/Colvar.h +32 -0
- plumed/_lib/include/plumed/colvar/ColvarInput.h +68 -0
- plumed/_lib/include/plumed/colvar/ColvarShortcut.h +81 -0
- plumed/_lib/include/plumed/colvar/CoordinationBase.h +52 -0
- plumed/_lib/include/plumed/colvar/MultiColvarTemplate.h +333 -0
- plumed/_lib/include/plumed/colvar/PathMSDBase.h +101 -0
- plumed/_lib/include/plumed/colvar/RMSDVector.h +78 -0
- plumed/_lib/include/plumed/config/Config.h +118 -0
- plumed/_lib/include/plumed/config/version.h +9 -0
- plumed/_lib/include/plumed/contour/ContourFindingObject.h +87 -0
- plumed/_lib/include/plumed/contour/DistanceFromContourBase.h +82 -0
- plumed/_lib/include/plumed/contour/FindContour.h +67 -0
- plumed/_lib/include/plumed/core/Action.h +540 -0
- plumed/_lib/include/plumed/core/ActionAnyorder.h +48 -0
- plumed/_lib/include/plumed/core/ActionAtomistic.h +343 -0
- plumed/_lib/include/plumed/core/ActionForInterface.h +99 -0
- plumed/_lib/include/plumed/core/ActionPilot.h +57 -0
- plumed/_lib/include/plumed/core/ActionRegister.h +124 -0
- plumed/_lib/include/plumed/core/ActionSet.h +163 -0
- plumed/_lib/include/plumed/core/ActionSetup.h +48 -0
- plumed/_lib/include/plumed/core/ActionShortcut.h +73 -0
- plumed/_lib/include/plumed/core/ActionToGetData.h +59 -0
- plumed/_lib/include/plumed/core/ActionToPutData.h +101 -0
- plumed/_lib/include/plumed/core/ActionWithArguments.h +140 -0
- plumed/_lib/include/plumed/core/ActionWithMatrix.h +87 -0
- plumed/_lib/include/plumed/core/ActionWithValue.h +258 -0
- plumed/_lib/include/plumed/core/ActionWithVector.h +94 -0
- plumed/_lib/include/plumed/core/ActionWithVirtualAtom.h +123 -0
- plumed/_lib/include/plumed/core/CLTool.h +177 -0
- plumed/_lib/include/plumed/core/CLToolMain.h +102 -0
- plumed/_lib/include/plumed/core/CLToolRegister.h +108 -0
- plumed/_lib/include/plumed/core/Colvar.h +115 -0
- plumed/_lib/include/plumed/core/DataPassingObject.h +94 -0
- plumed/_lib/include/plumed/core/DataPassingTools.h +54 -0
- plumed/_lib/include/plumed/core/DomainDecomposition.h +120 -0
- plumed/_lib/include/plumed/core/ExchangePatterns.h +47 -0
- plumed/_lib/include/plumed/core/FlexibleBin.h +63 -0
- plumed/_lib/include/plumed/core/GREX.h +61 -0
- plumed/_lib/include/plumed/core/GenericMolInfo.h +89 -0
- plumed/_lib/include/plumed/core/Group.h +41 -0
- plumed/_lib/include/plumed/core/ModuleMap.h +30 -0
- plumed/_lib/include/plumed/core/ParallelTaskManager.h +1023 -0
- plumed/_lib/include/plumed/core/PbcAction.h +61 -0
- plumed/_lib/include/plumed/core/PlumedMain.h +632 -0
- plumed/_lib/include/plumed/core/PlumedMainInitializer.h +118 -0
- plumed/_lib/include/plumed/core/RegisterBase.h +340 -0
- plumed/_lib/include/plumed/core/TargetDist.h +48 -0
- plumed/_lib/include/plumed/core/Value.h +547 -0
- plumed/_lib/include/plumed/core/WithCmd.h +93 -0
- plumed/_lib/include/plumed/dimred/SMACOF.h +55 -0
- plumed/_lib/include/plumed/drr/DRR.h +383 -0
- plumed/_lib/include/plumed/drr/colvar_UIestimator.h +777 -0
- plumed/_lib/include/plumed/fisst/legendre_rule_fast.h +44 -0
- plumed/_lib/include/plumed/function/Custom.h +54 -0
- plumed/_lib/include/plumed/function/Function.h +85 -0
- plumed/_lib/include/plumed/function/FunctionOfMatrix.h +368 -0
- plumed/_lib/include/plumed/function/FunctionOfScalar.h +135 -0
- plumed/_lib/include/plumed/function/FunctionOfVector.h +296 -0
- plumed/_lib/include/plumed/function/FunctionSetup.h +180 -0
- plumed/_lib/include/plumed/function/FunctionShortcut.h +130 -0
- plumed/_lib/include/plumed/function/FunctionWithSingleArgument.h +165 -0
- plumed/_lib/include/plumed/gridtools/ActionWithGrid.h +43 -0
- plumed/_lib/include/plumed/gridtools/EvaluateGridFunction.h +99 -0
- plumed/_lib/include/plumed/gridtools/FunctionOfGrid.h +295 -0
- plumed/_lib/include/plumed/gridtools/GridCoordinatesObject.h +179 -0
- plumed/_lib/include/plumed/gridtools/GridSearch.h +135 -0
- plumed/_lib/include/plumed/gridtools/Interpolator.h +45 -0
- plumed/_lib/include/plumed/gridtools/KDE.h +455 -0
- plumed/_lib/include/plumed/gridtools/RDF.h +40 -0
- plumed/_lib/include/plumed/gridtools/SumOfKernels.h +219 -0
- plumed/_lib/include/plumed/isdb/MetainferenceBase.h +398 -0
- plumed/_lib/include/plumed/lapack/def_external.h +207 -0
- plumed/_lib/include/plumed/lapack/def_internal.h +388 -0
- plumed/_lib/include/plumed/lapack/lapack.h +899 -0
- plumed/_lib/include/plumed/lapack/lapack_limits.h +79 -0
- plumed/_lib/include/plumed/lapack/real.h +50 -0
- plumed/_lib/include/plumed/lepton/CompiledExpression.h +164 -0
- plumed/_lib/include/plumed/lepton/CustomFunction.h +143 -0
- plumed/_lib/include/plumed/lepton/Exception.h +93 -0
- plumed/_lib/include/plumed/lepton/ExpressionProgram.h +137 -0
- plumed/_lib/include/plumed/lepton/ExpressionTreeNode.h +145 -0
- plumed/_lib/include/plumed/lepton/Lepton.h +85 -0
- plumed/_lib/include/plumed/lepton/MSVC_erfc.h +123 -0
- plumed/_lib/include/plumed/lepton/Operation.h +1302 -0
- plumed/_lib/include/plumed/lepton/ParsedExpression.h +165 -0
- plumed/_lib/include/plumed/lepton/Parser.h +111 -0
- plumed/_lib/include/plumed/lepton/windowsIncludes.h +73 -0
- plumed/_lib/include/plumed/mapping/Path.h +44 -0
- plumed/_lib/include/plumed/mapping/PathProjectionCalculator.h +57 -0
- plumed/_lib/include/plumed/matrixtools/MatrixOperationBase.h +54 -0
- plumed/_lib/include/plumed/matrixtools/MatrixTimesMatrix.h +309 -0
- plumed/_lib/include/plumed/matrixtools/MatrixTimesVectorBase.h +365 -0
- plumed/_lib/include/plumed/matrixtools/OuterProduct.h +238 -0
- plumed/_lib/include/plumed/maze/Core.h +65 -0
- plumed/_lib/include/plumed/maze/Loss.h +86 -0
- plumed/_lib/include/plumed/maze/Member.h +66 -0
- plumed/_lib/include/plumed/maze/Memetic.h +799 -0
- plumed/_lib/include/plumed/maze/Optimizer.h +357 -0
- plumed/_lib/include/plumed/maze/Random_MT.h +156 -0
- plumed/_lib/include/plumed/maze/Tools.h +183 -0
- plumed/_lib/include/plumed/metatomic/vesin.h +188 -0
- plumed/_lib/include/plumed/molfile/Gromacs.h +2013 -0
- plumed/_lib/include/plumed/molfile/endianswap.h +217 -0
- plumed/_lib/include/plumed/molfile/fastio.h +683 -0
- plumed/_lib/include/plumed/molfile/largefiles.h +78 -0
- plumed/_lib/include/plumed/molfile/libmolfile_plugin.h +77 -0
- plumed/_lib/include/plumed/molfile/molfile_plugin.h +1034 -0
- plumed/_lib/include/plumed/molfile/periodic_table.h +248 -0
- plumed/_lib/include/plumed/molfile/readpdb.h +447 -0
- plumed/_lib/include/plumed/molfile/vmdplugin.h +236 -0
- plumed/_lib/include/plumed/multicolvar/MultiColvarShortcuts.h +45 -0
- plumed/_lib/include/plumed/opes/ExpansionCVs.h +79 -0
- plumed/_lib/include/plumed/sasa/Sasa.h +32 -0
- plumed/_lib/include/plumed/secondarystructure/SecondaryStructureBase.h +372 -0
- plumed/_lib/include/plumed/setup/ActionSetup.h +25 -0
- plumed/_lib/include/plumed/small_vector/small_vector.h +6114 -0
- plumed/_lib/include/plumed/symfunc/CoordinationNumbers.h +41 -0
- plumed/_lib/include/plumed/tools/Angle.h +52 -0
- plumed/_lib/include/plumed/tools/AtomDistribution.h +138 -0
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- plumed/_lib/include/plumed/tools/BiasRepresentation.h +106 -0
- plumed/_lib/include/plumed/tools/BitmaskEnum.h +167 -0
- plumed/_lib/include/plumed/tools/Brent1DRootSearch.h +159 -0
- plumed/_lib/include/plumed/tools/CheckInRange.h +44 -0
- plumed/_lib/include/plumed/tools/Citations.h +74 -0
- plumed/_lib/include/plumed/tools/ColvarOutput.h +118 -0
- plumed/_lib/include/plumed/tools/Communicator.h +316 -0
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- plumed/_lib/include/plumed/tools/Grid.h +638 -0
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- plumed/_lib/include/plumed/tools/KernelFunctions.h +113 -0
- plumed/_lib/include/plumed/tools/Keywords.h +380 -0
- plumed/_lib/include/plumed/tools/LatticeReduction.h +66 -0
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- plumed/_lib/include/plumed/tools/Log.h +41 -0
- plumed/_lib/include/plumed/tools/LoopUnroller.h +163 -0
- plumed/_lib/include/plumed/tools/Matrix.h +721 -0
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@@ -0,0 +1,420 @@
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!
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! Copyright (C) 2001-2011 Quantum ESPRESSO group
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! This file is distributed under the terms of the
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! GNU General Public License. See the file `License'
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! in the root directory of the present distribution,
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! or http://www.gnu.org/copyleft/gpl.txt .
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!
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!----------------------------------------------------------------------------
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! TB
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! included gate related forces
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!----------------------------------------------------------------------------
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!
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!----------------------------------------------------------------------------
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SUBROUTINE forces()
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!----------------------------------------------------------------------------
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!
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! ... This routine is a driver routine which computes the forces
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! ... acting on the atoms. The complete expression of the forces
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! ... contains four parts which are computed by different routines:
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!
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! ... a) force_lc, local contribution to the forces
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! ... b) force_cc, contribution due to NLCC
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! ... c) force_ew, contribution due to the electrostatic ewald term
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! ... d) force_us, contribution due to the non-local potential
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! ... e) force_corr, correction term for incomplete self-consistency
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! ... f) force_hub, contribution due to the Hubbard term
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! ... g) force_london, semi-empirical correction for dispersion forces
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! ... h) force_d3, Grimme-D3 (DFT-D3) correction to dispersion forces
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!
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!
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USE kinds, ONLY : DP
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USE io_global, ONLY : stdout
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USE cell_base, ONLY : at, bg, alat, omega
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34
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USE ions_base, ONLY : nat, ntyp => nsp, ityp, tau, zv, amass, extfor, atm
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35
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USE fft_base, ONLY : dfftp
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36
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USE gvect, ONLY : ngm, gstart, ngl, nl, igtongl, g, gg, gcutm
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37
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USE lsda_mod, ONLY : nspin
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USE symme, ONLY : symvector
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USE vlocal, ONLY : strf, vloc
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USE force_mod, ONLY : force, lforce, sumfor
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USE scf, ONLY : rho
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USE ions_base, ONLY : if_pos
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USE ldaU, ONLY : lda_plus_u, U_projection
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USE extfield, ONLY : tefield, forcefield, gate, forcegate, relaxz
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USE control_flags, ONLY : gamma_only, remove_rigid_rot, textfor, &
|
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46
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iverbosity, llondon, ldftd3, lxdm, ts_vdw
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USE plugin_flags
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48
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USE bp, ONLY : lelfield, gdir, l3dstring, efield_cart, &
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49
|
+
efield_cry,efield
|
|
50
|
+
USE uspp, ONLY : okvan
|
|
51
|
+
USE martyna_tuckerman, ONLY: do_comp_mt, wg_corr_force
|
|
52
|
+
USE london_module, ONLY : force_london
|
|
53
|
+
USE dftd3_api, ONLY : get_atomic_number, dftd3_calc
|
|
54
|
+
USE dftd3_qe, ONLY: dftd3_pbc_gdisp, dftd3
|
|
55
|
+
|
|
56
|
+
USE xdm_module, ONLY : force_xdm
|
|
57
|
+
USE tsvdw_module, ONLY : FtsvdW
|
|
58
|
+
USE esm, ONLY : do_comp_esm, esm_bc, esm_force_ew
|
|
59
|
+
USE qmmm, ONLY : qmmm_mode
|
|
60
|
+
!
|
|
61
|
+
IMPLICIT NONE
|
|
62
|
+
!
|
|
63
|
+
REAL(DP), ALLOCATABLE :: forcenl(:,:), &
|
|
64
|
+
forcelc(:,:), &
|
|
65
|
+
forcecc(:,:), &
|
|
66
|
+
forceion(:,:), &
|
|
67
|
+
force_disp(:,:),&
|
|
68
|
+
force_d3(:,:),&
|
|
69
|
+
force_disp_xdm(:,:),&
|
|
70
|
+
force_mt(:,:), &
|
|
71
|
+
forcescc(:,:), &
|
|
72
|
+
forces_bp_efield(:,:), &
|
|
73
|
+
forceh(:,:)
|
|
74
|
+
! nonlocal, local, core-correction, ewald, scf correction terms, and hubbard
|
|
75
|
+
!
|
|
76
|
+
! aux is used to store a possible additional density
|
|
77
|
+
! now defined in real space
|
|
78
|
+
!
|
|
79
|
+
COMPLEX(DP), ALLOCATABLE :: auxg(:), auxr(:)
|
|
80
|
+
!
|
|
81
|
+
REAL(DP) :: sumscf, sum_mm
|
|
82
|
+
REAL(DP), PARAMETER :: eps = 1.e-12_dp
|
|
83
|
+
INTEGER :: ipol, na
|
|
84
|
+
! counter on polarization
|
|
85
|
+
! counter on atoms
|
|
86
|
+
!
|
|
87
|
+
REAL(DP) :: latvecs(3,3)
|
|
88
|
+
INTEGER :: atnum(1:nat)
|
|
89
|
+
REAL(DP) :: stress_dftd3(3,3)
|
|
90
|
+
!
|
|
91
|
+
!
|
|
92
|
+
CALL start_clock( 'forces' )
|
|
93
|
+
!
|
|
94
|
+
ALLOCATE( forcenl( 3, nat ), forcelc( 3, nat ), forcecc( 3, nat ), &
|
|
95
|
+
forceh( 3, nat ), forceion( 3, nat ), forcescc( 3, nat ) )
|
|
96
|
+
!
|
|
97
|
+
forcescc(:,:) = 0.D0
|
|
98
|
+
forceh(:,:) = 0.D0
|
|
99
|
+
force (:,:) = 0.D0
|
|
100
|
+
!
|
|
101
|
+
! ... The nonlocal contribution is computed here
|
|
102
|
+
!
|
|
103
|
+
CALL force_us( forcenl )
|
|
104
|
+
!
|
|
105
|
+
! ... The local contribution
|
|
106
|
+
!
|
|
107
|
+
CALL force_lc( nat, tau, ityp, alat, omega, ngm, ngl, igtongl, &
|
|
108
|
+
g, rho%of_r, nl, nspin, gstart, gamma_only, vloc, &
|
|
109
|
+
forcelc )
|
|
110
|
+
!
|
|
111
|
+
! ... The NLCC contribution
|
|
112
|
+
!
|
|
113
|
+
CALL force_cc( forcecc )
|
|
114
|
+
!
|
|
115
|
+
! ... The Hubbard contribution
|
|
116
|
+
! (included by force_us if using beta as local projectors)
|
|
117
|
+
!
|
|
118
|
+
IF ( lda_plus_u .AND. U_projection.NE.'pseudo' ) CALL force_hub( forceh )
|
|
119
|
+
!
|
|
120
|
+
! ... The ionic contribution is computed here
|
|
121
|
+
!
|
|
122
|
+
IF( do_comp_esm ) THEN
|
|
123
|
+
CALL esm_force_ew( forceion )
|
|
124
|
+
ELSE
|
|
125
|
+
CALL force_ew( alat, nat, ntyp, ityp, zv, at, bg, tau, omega, g, &
|
|
126
|
+
gg, ngm, gstart, gamma_only, gcutm, strf, forceion )
|
|
127
|
+
END IF
|
|
128
|
+
!
|
|
129
|
+
! ... the semi-empirical dispersion correction
|
|
130
|
+
!
|
|
131
|
+
IF ( llondon ) THEN
|
|
132
|
+
!
|
|
133
|
+
ALLOCATE ( force_disp ( 3 , nat ) )
|
|
134
|
+
force_disp ( : , : ) = 0.0_DP
|
|
135
|
+
force_disp = force_london( alat , nat , ityp , at , bg , tau )
|
|
136
|
+
!
|
|
137
|
+
END IF
|
|
138
|
+
!
|
|
139
|
+
! ... The Grimme-D3 dispersion correction
|
|
140
|
+
!
|
|
141
|
+
IF ( ldftd3 ) THEN
|
|
142
|
+
!
|
|
143
|
+
ALLOCATE ( force_d3 (3, nat))
|
|
144
|
+
force_d3 ( : , : ) = 0.0_DP
|
|
145
|
+
latvecs(:,:) = at(:,:)*alat
|
|
146
|
+
tau(:,:)=tau(:,:)*alat
|
|
147
|
+
atnum(:) = get_atomic_number(atm(ityp(:)))
|
|
148
|
+
call dftd3_pbc_gdisp(dftd3, tau, atnum, latvecs, &
|
|
149
|
+
force_d3, stress_dftd3)
|
|
150
|
+
force_d3 = -2.d0*force_d3
|
|
151
|
+
tau(:,:)=tau(:,:)/alat
|
|
152
|
+
END IF
|
|
153
|
+
!
|
|
154
|
+
!
|
|
155
|
+
IF (lxdm) THEN
|
|
156
|
+
ALLOCATE (force_disp_xdm(3,nat))
|
|
157
|
+
force_disp_xdm = 0._dp
|
|
158
|
+
force_disp_xdm = force_xdm(nat)
|
|
159
|
+
end if
|
|
160
|
+
|
|
161
|
+
!
|
|
162
|
+
! ... The SCF contribution
|
|
163
|
+
!
|
|
164
|
+
CALL force_corr( forcescc )
|
|
165
|
+
!
|
|
166
|
+
IF (do_comp_mt) THEN
|
|
167
|
+
!
|
|
168
|
+
ALLOCATE ( force_mt ( 3 , nat ) )
|
|
169
|
+
CALL wg_corr_force( .true.,omega, nat, ntyp, ityp, ngm, g, tau, zv, strf, &
|
|
170
|
+
nspin, rho%of_g, force_mt )
|
|
171
|
+
END IF
|
|
172
|
+
!
|
|
173
|
+
! ... call void routine for user define/ plugin patches on internal forces
|
|
174
|
+
!
|
|
175
|
+
call plugin_int_forces()
|
|
176
|
+
!
|
|
177
|
+
! Berry's phase electric field terms
|
|
178
|
+
!
|
|
179
|
+
if(lelfield) then
|
|
180
|
+
ALLOCATE ( forces_bp_efield (3,nat) )
|
|
181
|
+
forces_bp_efield(:,:)=0.d0
|
|
182
|
+
if(.not.l3dstring) then
|
|
183
|
+
if(okvan) call forces_us_efield(forces_bp_efield,gdir,efield)
|
|
184
|
+
call forces_ion_efield(forces_bp_efield,gdir,efield)
|
|
185
|
+
else
|
|
186
|
+
if(okvan)then
|
|
187
|
+
do ipol=1,3
|
|
188
|
+
call forces_us_efield(forces_bp_efield,ipol,efield_cry(ipol))
|
|
189
|
+
enddo
|
|
190
|
+
endif
|
|
191
|
+
do ipol=1,3
|
|
192
|
+
call forces_ion_efield(forces_bp_efield,ipol,efield_cart(ipol))
|
|
193
|
+
enddo
|
|
194
|
+
endif
|
|
195
|
+
endif
|
|
196
|
+
!
|
|
197
|
+
! ... here we sum all the contributions and compute the total force acting
|
|
198
|
+
! ... on the crystal
|
|
199
|
+
!
|
|
200
|
+
DO ipol = 1, 3
|
|
201
|
+
!
|
|
202
|
+
sumfor = 0.D0
|
|
203
|
+
!
|
|
204
|
+
DO na = 1, nat
|
|
205
|
+
!
|
|
206
|
+
force(ipol,na) = force(ipol,na) + &
|
|
207
|
+
forcenl(ipol,na) + &
|
|
208
|
+
forceion(ipol,na) + &
|
|
209
|
+
forcelc(ipol,na) + &
|
|
210
|
+
forcecc(ipol,na) + &
|
|
211
|
+
forceh(ipol,na) + &
|
|
212
|
+
forcescc(ipol,na)
|
|
213
|
+
!
|
|
214
|
+
IF ( llondon ) force(ipol,na) = force(ipol,na) + force_disp(ipol,na)
|
|
215
|
+
IF ( ldftd3 ) force(ipol,na) = force(ipol,na) + force_d3(ipol,na)
|
|
216
|
+
IF ( lxdm ) force(ipol,na) = force(ipol,na) + force_disp_xdm(ipol,na)
|
|
217
|
+
! factor 2 converts from Ha to Ry a.u.
|
|
218
|
+
IF ( ts_vdw ) force(ipol,na) = force(ipol,na) + 2.0_dp*FtsvdW(ipol,na)
|
|
219
|
+
IF ( tefield ) force(ipol,na) = force(ipol,na) + forcefield(ipol,na)
|
|
220
|
+
IF ( gate ) force(ipol,na) = force(ipol,na) + forcegate(ipol,na) ! TB
|
|
221
|
+
IF (lelfield) force(ipol,na) = force(ipol,na) + forces_bp_efield(ipol,na)
|
|
222
|
+
IF (do_comp_mt)force(ipol,na) = force(ipol,na) + force_mt(ipol,na)
|
|
223
|
+
|
|
224
|
+
sumfor = sumfor + force(ipol,na)
|
|
225
|
+
!
|
|
226
|
+
END DO
|
|
227
|
+
!
|
|
228
|
+
!TB
|
|
229
|
+
IF ((gate.and.relaxz).AND.(ipol==3)) WRITE( stdout, '("Total force in z direction = 0 disabled")')
|
|
230
|
+
!
|
|
231
|
+
IF ( (do_comp_esm .and. ( esm_bc .ne. 'pbc' )).or.(gate.and.relaxz) ) THEN
|
|
232
|
+
!
|
|
233
|
+
! ... impose total force along xy = 0
|
|
234
|
+
!
|
|
235
|
+
DO na = 1, nat
|
|
236
|
+
IF ( ipol .ne. 3) force(ipol,na) = force(ipol,na) &
|
|
237
|
+
- sumfor / DBLE ( nat )
|
|
238
|
+
END DO
|
|
239
|
+
!
|
|
240
|
+
ELSE IF ( qmmm_mode < 0 ) THEN
|
|
241
|
+
!
|
|
242
|
+
! ... impose total force = 0 except in a QM-MM calculation
|
|
243
|
+
!
|
|
244
|
+
DO na = 1, nat
|
|
245
|
+
force(ipol,na) = force(ipol,na) - sumfor / DBLE( nat )
|
|
246
|
+
END DO
|
|
247
|
+
!
|
|
248
|
+
ENDIF
|
|
249
|
+
!
|
|
250
|
+
END DO
|
|
251
|
+
!
|
|
252
|
+
! ... resymmetrize (should not be needed, but ...)
|
|
253
|
+
!
|
|
254
|
+
CALL symvector ( nat, force )
|
|
255
|
+
!
|
|
256
|
+
IF ( remove_rigid_rot ) &
|
|
257
|
+
CALL remove_tot_torque( nat, tau, amass(ityp(:)), force )
|
|
258
|
+
!
|
|
259
|
+
IF( textfor ) force(:,:) = force(:,:) + extfor(:,:)
|
|
260
|
+
!
|
|
261
|
+
! ... call void routine for user define/ plugin patches on external forces
|
|
262
|
+
!
|
|
263
|
+
CALL plugin_ext_forces()
|
|
264
|
+
!
|
|
265
|
+
! ... write on output the forces
|
|
266
|
+
!
|
|
267
|
+
WRITE( stdout, '(/,5x,"Forces acting on atoms (cartesian axes, Ry/au):", / )')
|
|
268
|
+
DO na = 1, nat
|
|
269
|
+
WRITE( stdout, 9035) na, ityp(na), force(:,na)
|
|
270
|
+
END DO
|
|
271
|
+
!
|
|
272
|
+
! ... forces on fixed coordinates are set to zero ( C.S. 15/10/2003 )
|
|
273
|
+
!
|
|
274
|
+
force(:,:) = force(:,:) * DBLE( if_pos )
|
|
275
|
+
forcescc(:,:) = forcescc(:,:) * DBLE( if_pos )
|
|
276
|
+
!
|
|
277
|
+
IF ( iverbosity > 0 ) THEN
|
|
278
|
+
IF ( do_comp_mt ) THEN
|
|
279
|
+
WRITE( stdout, '(5x,"The Martyna-Tuckerman correction term to forces")')
|
|
280
|
+
DO na = 1, nat
|
|
281
|
+
WRITE( stdout, 9035) na, ityp(na), ( force_mt(ipol,na), ipol = 1, 3 )
|
|
282
|
+
END DO
|
|
283
|
+
END IF
|
|
284
|
+
!
|
|
285
|
+
WRITE( stdout, '(5x,"The non-local contrib. to forces")')
|
|
286
|
+
DO na = 1, nat
|
|
287
|
+
WRITE( stdout, 9035) na, ityp(na), ( forcenl(ipol,na), ipol = 1, 3 )
|
|
288
|
+
END DO
|
|
289
|
+
WRITE( stdout, '(5x,"The ionic contribution to forces")')
|
|
290
|
+
DO na = 1, nat
|
|
291
|
+
WRITE( stdout, 9035) na, ityp(na), ( forceion(ipol,na), ipol = 1, 3 )
|
|
292
|
+
END DO
|
|
293
|
+
WRITE( stdout, '(5x,"The local contribution to forces")')
|
|
294
|
+
DO na = 1, nat
|
|
295
|
+
WRITE( stdout, 9035) na, ityp(na), ( forcelc(ipol,na), ipol = 1, 3 )
|
|
296
|
+
END DO
|
|
297
|
+
WRITE( stdout, '(5x,"The core correction contribution to forces")')
|
|
298
|
+
DO na = 1, nat
|
|
299
|
+
WRITE( stdout, 9035) na, ityp(na), ( forcecc(ipol,na), ipol = 1, 3 )
|
|
300
|
+
END DO
|
|
301
|
+
WRITE( stdout, '(5x,"The Hubbard contrib. to forces")')
|
|
302
|
+
DO na = 1, nat
|
|
303
|
+
WRITE( stdout, 9035) na, ityp(na), ( forceh(ipol,na), ipol = 1, 3 )
|
|
304
|
+
END DO
|
|
305
|
+
WRITE( stdout, '(5x,"The SCF correction term to forces")')
|
|
306
|
+
DO na = 1, nat
|
|
307
|
+
WRITE( stdout, 9035) na, ityp(na), ( forcescc(ipol,na), ipol = 1, 3 )
|
|
308
|
+
END DO
|
|
309
|
+
!
|
|
310
|
+
IF ( llondon) THEN
|
|
311
|
+
WRITE( stdout, '(/,5x,"Dispersion contribution to forces:")')
|
|
312
|
+
DO na = 1, nat
|
|
313
|
+
WRITE( stdout, 9035) na, ityp(na), (force_disp(ipol,na), ipol = 1, 3)
|
|
314
|
+
END DO
|
|
315
|
+
END IF
|
|
316
|
+
!
|
|
317
|
+
IF ( ldftd3 ) THEN
|
|
318
|
+
WRITE( stdout, '(/,5x,"DFT-D3 dispersion contribution to forces:")')
|
|
319
|
+
DO na = 1, nat
|
|
320
|
+
WRITE( stdout, 9035) na, ityp(na), (force_d3(ipol,na), ipol = 1, 3)
|
|
321
|
+
END DO
|
|
322
|
+
END IF
|
|
323
|
+
!
|
|
324
|
+
IF (lxdm) THEN
|
|
325
|
+
WRITE( stdout, '(/,5x,"XDM contribution to forces:")')
|
|
326
|
+
DO na = 1, nat
|
|
327
|
+
WRITE( stdout, 9035) na, ityp(na), (force_disp_xdm(ipol,na), ipol = 1, 3)
|
|
328
|
+
END DO
|
|
329
|
+
END IF
|
|
330
|
+
!
|
|
331
|
+
IF ( ts_vdw) THEN
|
|
332
|
+
WRITE( stdout, '(/,5x,"TS-VDW contribution to forces:")')
|
|
333
|
+
DO na = 1, nat
|
|
334
|
+
WRITE( stdout, 9035) na, ityp(na), (2.0d0*FtsvdW(ipol,na), ipol=1,3)
|
|
335
|
+
END DO
|
|
336
|
+
END IF
|
|
337
|
+
!
|
|
338
|
+
! TB gate forces
|
|
339
|
+
IF ( gate ) THEN
|
|
340
|
+
WRITE( stdout, '(/,5x,"Gate contribution to forces:")')
|
|
341
|
+
DO na = 1, nat
|
|
342
|
+
WRITE( stdout, 9035) na, ityp(na), (forcegate(ipol,na), ipol = 1, 3)
|
|
343
|
+
END DO
|
|
344
|
+
END IF
|
|
345
|
+
!
|
|
346
|
+
END IF
|
|
347
|
+
!
|
|
348
|
+
sumfor = 0.D0
|
|
349
|
+
sumscf = 0.D0
|
|
350
|
+
!
|
|
351
|
+
DO na = 1, nat
|
|
352
|
+
!
|
|
353
|
+
sumfor = sumfor + force(1,na)**2 + force(2,na)**2 + force(3,na)**2
|
|
354
|
+
sumscf = sumscf + forcescc(1,na)**2 + forcescc(2,na)**2+ forcescc(3,na)**2
|
|
355
|
+
!
|
|
356
|
+
END DO
|
|
357
|
+
!
|
|
358
|
+
sumfor = SQRT( sumfor )
|
|
359
|
+
sumscf = SQRT( sumscf )
|
|
360
|
+
!
|
|
361
|
+
WRITE( stdout, '(/5x,"Total force = ",F12.6,5X, &
|
|
362
|
+
& "Total SCF correction = ",F12.6)') sumfor, sumscf
|
|
363
|
+
!
|
|
364
|
+
IF ( llondon .AND. iverbosity > 0 ) THEN
|
|
365
|
+
!
|
|
366
|
+
sum_mm = 0.D0
|
|
367
|
+
DO na = 1, nat
|
|
368
|
+
sum_mm = sum_mm + &
|
|
369
|
+
force_disp(1,na)**2 + force_disp(2,na)**2 + force_disp(3,na)**2
|
|
370
|
+
END DO
|
|
371
|
+
sum_mm = SQRT( sum_mm )
|
|
372
|
+
WRITE ( stdout, '(/,5x, "Total Dispersion Force = ",F12.6)') sum_mm
|
|
373
|
+
!
|
|
374
|
+
END IF
|
|
375
|
+
!
|
|
376
|
+
IF ( ldftd3 .AND. iverbosity > 0 ) THEN
|
|
377
|
+
!
|
|
378
|
+
sum_mm = 0.D0
|
|
379
|
+
DO na = 1, nat
|
|
380
|
+
sum_mm = sum_mm + &
|
|
381
|
+
force_d3(1,na)**2 + force_d3(2,na)**2 + force_d3(3,na)**2
|
|
382
|
+
END DO
|
|
383
|
+
sum_mm = SQRT( sum_mm )
|
|
384
|
+
WRITE ( stdout, '(/,5x, "DFT-D3 dispersion Force = ",F12.6)') sum_mm
|
|
385
|
+
!
|
|
386
|
+
END IF
|
|
387
|
+
!
|
|
388
|
+
IF ( lxdm .AND. iverbosity > 0 ) THEN
|
|
389
|
+
!
|
|
390
|
+
sum_mm = 0.D0
|
|
391
|
+
DO na = 1, nat
|
|
392
|
+
sum_mm = sum_mm + &
|
|
393
|
+
force_disp_xdm(1,na)**2 + force_disp_xdm(2,na)**2 + force_disp_xdm(3,na)**2
|
|
394
|
+
END DO
|
|
395
|
+
sum_mm = SQRT( sum_mm )
|
|
396
|
+
WRITE ( stdout, '(/,5x, "Total XDM Force = ",F12.6)') sum_mm
|
|
397
|
+
!
|
|
398
|
+
END IF
|
|
399
|
+
!
|
|
400
|
+
DEALLOCATE( forcenl, forcelc, forcecc, forceh, forceion, forcescc )
|
|
401
|
+
IF ( llondon ) DEALLOCATE ( force_disp )
|
|
402
|
+
IF ( ldftd3 ) DEALLOCATE ( force_d3 )
|
|
403
|
+
IF ( lxdm ) DEALLOCATE( force_disp_xdm )
|
|
404
|
+
IF ( lelfield ) DEALLOCATE ( forces_bp_efield )
|
|
405
|
+
!
|
|
406
|
+
lforce = .TRUE.
|
|
407
|
+
!
|
|
408
|
+
CALL stop_clock( 'forces' )
|
|
409
|
+
!
|
|
410
|
+
IF ( ( sumfor < 10.D0*sumscf ) .AND. ( sumfor > nat*eps ) ) &
|
|
411
|
+
WRITE( stdout,'(5x,"SCF correction compared to forces is large: ", &
|
|
412
|
+
& "reduce conv_thr to get better values")')
|
|
413
|
+
!
|
|
414
|
+
IF(ALLOCATED(force_mt)) DEALLOCATE( force_mt )
|
|
415
|
+
|
|
416
|
+
RETURN
|
|
417
|
+
!
|
|
418
|
+
9035 FORMAT(5X,'atom ',I4,' type ',I2,' force = ',3F14.8)
|
|
419
|
+
!
|
|
420
|
+
END SUBROUTINE forces
|
|
@@ -0,0 +1,70 @@
|
|
|
1
|
+
!
|
|
2
|
+
! Copyright (C) 2001-2009 Quantum ESPRESSO group
|
|
3
|
+
! This file is distributed under the terms of the
|
|
4
|
+
! GNU General Public License. See the file `License'
|
|
5
|
+
! in the root directory of the present distribution,
|
|
6
|
+
! or http://www.gnu.org/copyleft/gpl.txt .
|
|
7
|
+
!
|
|
8
|
+
!----------------------------------------------------------------------------
|
|
9
|
+
SUBROUTINE plugin_ext_forces()
|
|
10
|
+
!----------------------------------------------------------------------------
|
|
11
|
+
!
|
|
12
|
+
!
|
|
13
|
+
USE mp, ONLY : mp_bcast
|
|
14
|
+
USE mp_images, ONLY : intra_image_comm
|
|
15
|
+
USE io_global, ONLY : stdout, ionode, ionode_id
|
|
16
|
+
USE kinds, ONLY : DP
|
|
17
|
+
!
|
|
18
|
+
USE plugin_flags
|
|
19
|
+
!
|
|
20
|
+
USE cell_base, ONLY : alat, at
|
|
21
|
+
USE ions_base, ONLY : tau, nat, amass, ityp
|
|
22
|
+
USE force_mod, ONLY : force,sigma
|
|
23
|
+
USE control_flags, ONLY : istep
|
|
24
|
+
USE ener, ONLY : etot
|
|
25
|
+
!
|
|
26
|
+
IMPLICIT NONE
|
|
27
|
+
!
|
|
28
|
+
INTEGER:: i,j,ia
|
|
29
|
+
REAL(DP) :: at_plumed(3,3)
|
|
30
|
+
REAL(DP) :: virial(3,3)
|
|
31
|
+
REAL(DP) :: volume
|
|
32
|
+
REAL(DP), ALLOCATABLE :: tau_plumed(:,:)
|
|
33
|
+
REAL(DP) :: masses_plumed(nat)
|
|
34
|
+
!
|
|
35
|
+
masses_plumed = 0.0_DP
|
|
36
|
+
IF(use_plumed) then
|
|
37
|
+
IF(ionode)THEN
|
|
38
|
+
at_plumed=alat*at; ! the cell, rescaled properly
|
|
39
|
+
allocate(tau_plumed(3,nat))
|
|
40
|
+
tau_plumed=alat*tau
|
|
41
|
+
volume=+at_plumed(1,1)*at_plumed(2,2)*at_plumed(3,3) &
|
|
42
|
+
+at_plumed(1,2)*at_plumed(2,3)*at_plumed(3,1) &
|
|
43
|
+
+at_plumed(1,3)*at_plumed(2,1)*at_plumed(3,2) &
|
|
44
|
+
-at_plumed(1,1)*at_plumed(3,2)*at_plumed(2,3) &
|
|
45
|
+
-at_plumed(1,2)*at_plumed(3,3)*at_plumed(2,1) &
|
|
46
|
+
-at_plumed(1,3)*at_plumed(3,1)*at_plumed(2,2)
|
|
47
|
+
virial=-sigma*volume
|
|
48
|
+
! the masses in QE are stored per type, see q-e//Modules/ions_base.f90
|
|
49
|
+
do ia=1,nat
|
|
50
|
+
masses_plumed(ia)=amass(ityp(ia))
|
|
51
|
+
end do
|
|
52
|
+
CALL plumed_f_gcmd("setStep"//char(0),istep)
|
|
53
|
+
CALL plumed_f_gcmd("setMasses"//char(0),masses_plumed)
|
|
54
|
+
CALL plumed_f_gcmd("setForces"//char(0),force)
|
|
55
|
+
CALL plumed_f_gcmd("setPositions"//char(0),tau_plumed)
|
|
56
|
+
CALL plumed_f_gcmd("setBox"//char(0),at_plumed)
|
|
57
|
+
CALL plumed_f_gcmd("setVirial"//char(0),virial)
|
|
58
|
+
CALL plumed_f_gcmd("setEnergy"//char(0),etot)
|
|
59
|
+
CALL plumed_f_gcmd("calc"//char(0),0)
|
|
60
|
+
|
|
61
|
+
sigma=-virial/volume
|
|
62
|
+
|
|
63
|
+
deallocate(tau_plumed)
|
|
64
|
+
ENDIF
|
|
65
|
+
CALL mp_bcast(force, ionode_id, intra_image_comm)
|
|
66
|
+
CALL mp_bcast(sigma, ionode_id, intra_image_comm)
|
|
67
|
+
ENDIF
|
|
68
|
+
!
|
|
69
|
+
!
|
|
70
|
+
END SUBROUTINE plugin_ext_forces
|
|
@@ -0,0 +1,23 @@
|
|
|
1
|
+
!
|
|
2
|
+
! Copyright (C) 2001-2009 Quantum ESPRESSO group
|
|
3
|
+
! This file is distributed under the terms of the
|
|
4
|
+
! GNU General Public License. See the file `License'
|
|
5
|
+
! in the root directory of the present distribution,
|
|
6
|
+
! or http://www.gnu.org/copyleft/gpl.txt .
|
|
7
|
+
!
|
|
8
|
+
!----------------------------------------------------------------------------
|
|
9
|
+
SUBROUTINE plugin_ext_forces()
|
|
10
|
+
!----------------------------------------------------------------------------
|
|
11
|
+
!
|
|
12
|
+
!
|
|
13
|
+
USE mp, ONLY : mp_bcast
|
|
14
|
+
USE mp_images, ONLY : intra_image_comm
|
|
15
|
+
USE io_global, ONLY : stdout, ionode, ionode_id
|
|
16
|
+
USE kinds, ONLY : DP
|
|
17
|
+
!
|
|
18
|
+
USE plugin_flags
|
|
19
|
+
!
|
|
20
|
+
IMPLICIT NONE
|
|
21
|
+
!
|
|
22
|
+
!
|
|
23
|
+
END SUBROUTINE plugin_ext_forces
|
|
@@ -0,0 +1,62 @@
|
|
|
1
|
+
!
|
|
2
|
+
! Copyright (C) 2010 Quantum ESPRESSO group
|
|
3
|
+
! This file is distributed under the terms of the
|
|
4
|
+
! GNU General Public License. See the file `License'
|
|
5
|
+
! in the root directory of the present distribution,
|
|
6
|
+
! or http://www.gnu.org/copyleft/gpl.txt .
|
|
7
|
+
!
|
|
8
|
+
!----------------------------------------------------------------------------
|
|
9
|
+
SUBROUTINE plugin_initialization()
|
|
10
|
+
!----------------------------------------------------------------------------
|
|
11
|
+
!
|
|
12
|
+
USE io_global, ONLY : stdout, ionode
|
|
13
|
+
USE kinds, ONLY : DP
|
|
14
|
+
USE io_files, ONLY : tmp_dir
|
|
15
|
+
!
|
|
16
|
+
USE plugin_flags
|
|
17
|
+
!
|
|
18
|
+
USE ions_base, ONLY : amass, ityp, nat
|
|
19
|
+
!
|
|
20
|
+
USE dynamics_module, ONLY : dt
|
|
21
|
+
USE constants, ONLY : au_ps
|
|
22
|
+
!
|
|
23
|
+
!
|
|
24
|
+
IMPLICIT NONE
|
|
25
|
+
!
|
|
26
|
+
INTEGER :: na
|
|
27
|
+
INTEGER :: plumedavailable
|
|
28
|
+
REAL*8 :: energyUnits,lengthUnits,timeUnits
|
|
29
|
+
!
|
|
30
|
+
IF(use_plumed) then
|
|
31
|
+
|
|
32
|
+
CALL plumed_f_installed(plumedavailable)
|
|
33
|
+
|
|
34
|
+
IF(plumedavailable<=0)THEN
|
|
35
|
+
write(stdout,*)"YOU ARE LOOKING FOR PLUMED BUT LOOKS LIKE IT IS NOT AVAILABLE: DO YOU HAVE IT IN YOUR LD_LIBRARY_PATH?"
|
|
36
|
+
STOP
|
|
37
|
+
ELSE
|
|
38
|
+
IF (ionode) THEN
|
|
39
|
+
|
|
40
|
+
write(stdout,*)" CREATING PLUMED FROM THE PROGRAM"
|
|
41
|
+
call plumed_f_gcreate()
|
|
42
|
+
CALL plumed_f_gcmd("setRealPrecision"//char(0),8)
|
|
43
|
+
energyUnits=1312.75 ! Ry to kjoule mol
|
|
44
|
+
lengthUnits=0.0529177249 ! bohr to nm
|
|
45
|
+
timeUnits=2*au_ps ! internal time to ps
|
|
46
|
+
call plumed_f_gcmd("setMDEnergyUnits"//char(0),energyUnits)
|
|
47
|
+
call plumed_f_gcmd("setMDLengthUnits"//char(0),lengthUnits)
|
|
48
|
+
call plumed_f_gcmd("setMDTimeUnits"//char(0),timeUnits)
|
|
49
|
+
call plumed_f_gcmd("setPlumedDat"//char(0),"plumed.dat"//char(0))
|
|
50
|
+
call plumed_f_gcmd("setLogFile"//char(0),"PLUMED.OUT"//char(0))
|
|
51
|
+
call plumed_f_gcmd("setNatoms"//char(0),nat)
|
|
52
|
+
call plumed_f_gcmd("setMDEngine"//char(0),"qespresso"//char(0));
|
|
53
|
+
call plumed_f_gcmd("setTimestep"//char(0),dt);
|
|
54
|
+
call plumed_f_gcmd("init"//char(0),0);
|
|
55
|
+
|
|
56
|
+
|
|
57
|
+
ENDIF
|
|
58
|
+
ENDIF
|
|
59
|
+
ENDIF
|
|
60
|
+
!
|
|
61
|
+
!
|
|
62
|
+
END SUBROUTINE plugin_initialization
|
|
@@ -0,0 +1,21 @@
|
|
|
1
|
+
!
|
|
2
|
+
! Copyright (C) 2010 Quantum ESPRESSO group
|
|
3
|
+
! This file is distributed under the terms of the
|
|
4
|
+
! GNU General Public License. See the file `License'
|
|
5
|
+
! in the root directory of the present distribution,
|
|
6
|
+
! or http://www.gnu.org/copyleft/gpl.txt .
|
|
7
|
+
!
|
|
8
|
+
!----------------------------------------------------------------------------
|
|
9
|
+
SUBROUTINE plugin_initialization()
|
|
10
|
+
!----------------------------------------------------------------------------
|
|
11
|
+
!
|
|
12
|
+
USE io_global, ONLY : stdout, ionode
|
|
13
|
+
USE kinds, ONLY : DP
|
|
14
|
+
USE io_files, ONLY : tmp_dir
|
|
15
|
+
!
|
|
16
|
+
USE plugin_flags
|
|
17
|
+
!
|
|
18
|
+
IMPLICIT NONE
|
|
19
|
+
!
|
|
20
|
+
!
|
|
21
|
+
END SUBROUTINE plugin_initialization
|