genome-spy-python 0.1.0__py3-none-any.whl

genome_spy/schema/capabilities.json

@@ -0,0 +1,593 @@
+{
+  "schema_version": "0.87.0",
+  "definitions": [
+    "AggregateOp",
+    "AggregateParams",
+    "Align",
+    "AlignmentMismatchesParams",
+    "ArrowConfig",
+    "ArrowDirection",
+    "ArrowProps",
+    "ArrowRelativeSize",
+    "ArrowSize",
+    "Axis",
+    "AxisConfig",
+    "AxisGenomeData",
+    "AxisLabelLayoutParams",
+    "AxisOrient",
+    "AxisPlacement",
+    "AxisTicksData",
+    "BamData",
+    "Baseline",
+    "BedDataFormat",
+    "BedpeDataFormat",
+    "BigBedData",
+    "BigWigData",
+    "BindCheckbox",
+    "BindInput",
+    "BindRadioSelect",
+    "BindRange",
+    "Binding",
+    "BrushConfig",
+    "BuiltInThemeName",
+    "ChannelWithScale",
+    "ChromPosDef",
+    "ChromosomalLocus",
+    "CollectParams",
+    "ColorDef",
+    "ColorSchemeConfig",
+    "CompareParams",
+    "ComplexDomain",
+    "ConcatSpec",
+    "Conditional<MarkPropExprDef<Type>>",
+    "Conditional<MarkPropExprDef<TypeForShape>>",
+    "Conditional<MarkPropFieldDef<Type>>",
+    "Conditional<MarkPropFieldDef<TypeForShape>>",
+    "Conditional<ScaleDatumDef>",
+    "Conditional<ValueDef<(number|ExprRef)>>",
+    "Conditional<ValueDef<(string|null|ExprRef)>>",
+    "ConditionalParameter<MarkPropExprDef<Type>>",
+    "ConditionalParameter<MarkPropExprDef<TypeForShape>>",
+    "ConditionalParameter<MarkPropFieldDef<Type>>",
+    "ConditionalParameter<MarkPropFieldDef<TypeForShape>>",
+    "ConditionalParameter<ScaleDatumDef>",
+    "ConditionalParameter<ValueDef<(number|ExprRef)>>",
+    "ConditionalParameter<ValueDef<(string|null|ExprRef)>>",
+    "Contig",
+    "CoordinateLookupInput",
+    "CoordinateLookupParams",
+    "CoreRootSpec",
+    "CoverageParams",
+    "CrossData",
+    "CrossInput",
+    "CrossParams",
+    "CsvDataFormat",
+    "Data",
+    "DataFormat",
+    "DataSource",
+    "DirectionDef",
+    "Displace1DParams",
+    "DomEventType",
+    "DomainValue",
+    "DomainValueArray",
+    "DsvDataFormat",
+    "DynamicCallbackData",
+    "DynamicOpacity",
+    "Encoding",
+    "EventConfig",
+    "ExprDef",
+    "ExprFilterParams",
+    "ExprParameter",
+    "ExprRef",
+    "FadedMultiscaleStops",
+    "Field",
+    "FieldDefWithoutScale",
+    "FieldName",
+    "FieldOrDatumDefWithCondition<MarkPropFieldDef<Type>,(string|null)>",
+    "FieldOrDatumDefWithCondition<MarkPropFieldDef<Type>,number>",
+    "FieldOrDatumDefWithCondition<MarkPropFieldDef<TypeForShape>,(string|null)>",
+    "FieldOrDatumDefWithCondition<ScaleDatumDef,(string|null)>",
+    "FieldOrDatumDefWithCondition<ScaleDatumDef,number>",
+    "FilterParams",
+    "FilterScoredLabelsParams",
+    "FlattenCigarParams",
+    "FlattenCompressedExonsParams",
+    "FlattenDelimitedParams",
+    "FlattenParams",
+    "FlattenSequenceParams",
+    "FontStyle",
+    "FontWeight",
+    "FormulaParams",
+    "Generator",
+    "GenomeAxis",
+    "GenomeConfig",
+    "GenomeConfigBase",
+    "GenomeDefinition",
+    "GenomeSpyConfig",
+    "Gff3Data",
+    "HConcatSpec",
+    "HandledTooltip",
+    "IdentifierParams",
+    "ImportSpec",
+    "IndexUrlSourceRef",
+    "IndexUrlTemplate",
+    "IndexedFastaData",
+    "InlineData",
+    "InlineDataset",
+    "InlineGenomeConfig",
+    "InlineGenomeDefinition",
+    "InlineLocusAssembly",
+    "InteractionEventType",
+    "IntervalSelectionConfig",
+    "JsonDataFormat",
+    "KeyDef",
+    "LayerSpec",
+    "LazyData",
+    "LazyDataParams",
+    "Legend",
+    "LegendConfig",
+    "LegendDirection",
+    "LegendLayout",
+    "LegendOrient",
+    "LegendRegionAnchor",
+    "LegendRegionLayout",
+    "LegendResolutionBehavior",
+    "LegendTitleOrient",
+    "LerpTransition",
+    "LinearizeGenomicCoordinateParams",
+    "LinkConfig",
+    "LinkProps",
+    "LookupParams",
+    "LookupSelfInput",
+    "MarkConfig",
+    "MarkPropDef<(string|null),TypeForShape>",
+    "MarkPropDef<(string|null)>",
+    "MarkPropDef<number>",
+    "MarkPropExprDef",
+    "MarkPropExprDef<Type>",
+    "MarkPropExprDef<TypeForShape>",
+    "MarkProps",
+    "MarkType",
+    "MeasureTextParams",
+    "MergeFacetsParams",
+    "MultiUrlSourceRef",
+    "MultiscaleSpec",
+    "MultiscaleStops",
+    "MultiscaleStopsDef",
+    "NamedData",
+    "NamedGenomeConfig",
+    "NumericDomain",
+    "NumericMarkPropDef",
+    "NumericStopDef",
+    "NumericValueDef",
+    "OffsetChannel",
+    "OffsetDef",
+    "OtherDataFormat",
+    "OverhangConfig",
+    "PackLegendLabelsParams",
+    "PaddingConfig",
+    "Paddings",
+    "ParamTransition",
+    "Parameter",
+    "Parse",
+    "ParseValue",
+    "PileupParams",
+    "PlainValueParameter",
+    "PointConfig",
+    "PointProps",
+    "PointSelectionConfig",
+    "Position2Def",
+    "PositionDatumDef",
+    "PositionDef",
+    "PositionExprDef",
+    "PositionFieldDef",
+    "PositionValueDef",
+    "PositionalChannel",
+    "PrimaryPositionalChannel",
+    "ProjectParams",
+    "RangeConfig",
+    "RectConfig",
+    "RectProps",
+    "RegexExtractParams",
+    "RegexFoldParams",
+    "ResolutionBehavior",
+    "ResolutionMap<LegendResolutionBehavior>",
+    "ResolutionMap<ResolutionBehavior>",
+    "RuleConfig",
+    "RuleProps",
+    "RulerChannelValue",
+    "RulerClear",
+    "RulerConfig",
+    "RulerDisplay",
+    "RulerEventConfig",
+    "RulerEventType",
+    "RulerExtent",
+    "RulerInitMapping",
+    "RulerMarkConfig",
+    "RulerParameter",
+    "RulerSnap",
+    "RulerSource",
+    "SampleParams",
+    "Scalar",
+    "ScalarDomain",
+    "Scale",
+    "ScaleConfig",
+    "ScaleInterpolate",
+    "ScaleInterpolateParams",
+    "ScaleType",
+    "SchemeParams",
+    "SearchDef",
+    "SecondaryChromPosDef",
+    "SecondaryPositionalChannel",
+    "SelectionDomainRef",
+    "SelectionExtent",
+    "SelectionFilterParams",
+    "SelectionInitIntervalMapping",
+    "SelectionParameter",
+    "SelectionType",
+    "SeparatorProps",
+    "SequenceGenerator",
+    "SequenceParams",
+    "SetIntersectionParams",
+    "ShapeDef",
+    "SingleUrlSourceRef",
+    "SizeDef",
+    "SortOrder",
+    "StackParams",
+    "Step",
+    "StringDatumDef",
+    "StringFieldDef",
+    "StyleConfig",
+    "TabixTsvData",
+    "TemplateImport",
+    "TextConfig",
+    "TextDef",
+    "TextProps",
+    "TickConfig",
+    "TickProps",
+    "Title",
+    "TitleAnchor",
+    "TitleConfig",
+    "TitleFrame",
+    "TitleOrient",
+    "Tooltip",
+    "TooltipDef",
+    "TransformParams",
+    "TransitionedMultiscaleStops",
+    "TransitionedValueParameter",
+    "TruncateTextParams",
+    "Type",
+    "TypeForShape",
+    "UnitSpec",
+    "UrlData",
+    "UrlGenomeConfig",
+    "UrlGenomeDefinition",
+    "UrlImport",
+    "UrlList",
+    "UrlSourceRef",
+    "UrlTemplate",
+    "VConcatSpec",
+    "ValueDef<ArrowDirection>",
+    "ValueDef<number>",
+    "ValueDef<string>",
+    "ValueDefWithCondition<(string|null),Type>",
+    "ValueDefWithCondition<(string|null),TypeForShape>",
+    "ValueDefWithCondition<number,Type>",
+    "ValueParameter",
+    "VariableParameter",
+    "VcfData",
+    "VcfDataFormat",
+    "ViewBackground",
+    "ViewConfig",
+    "ViewOpacityDef",
+    "ViewSpec",
+    "ViewportDomainRef",
+    "WigDataFormat",
+    "WindowOnlyOp",
+    "WindowOp",
+    "WindowParams",
+    "ZoomParams"
+  ],
+  "marks": [
+    "rect",
+    "point",
+    "rule",
+    "tick",
+    "text",
+    "link",
+    "arrow"
+  ],
+  "encoding_channels": [
+    "angle",
+    "color",
+    "direction",
+    "dx",
+    "dy",
+    "facetIndex",
+    "fill",
+    "fillOpacity",
+    "key",
+    "opacity",
+    "sample",
+    "search",
+    "semanticScore",
+    "shape",
+    "size",
+    "stroke",
+    "strokeOpacity",
+    "strokeWidth",
+    "text",
+    "tooltip",
+    "uniqueId",
+    "x",
+    "x2",
+    "xOffset",
+    "y",
+    "y2",
+    "yOffset"
+  ],
+  "transforms": [
+    {
+      "schema": "AlignmentMismatchesParams",
+      "type": "alignmentMismatches",
+      "method": "transform_alignment_mismatches"
+    },
+    {
+      "schema": "AggregateParams",
+      "type": "aggregate",
+      "method": "transform_aggregate"
+    },
+    {
+      "schema": "CollectParams",
+      "type": "collect",
+      "method": "transform_collect"
+    },
+    {
+      "schema": "CoverageParams",
+      "type": "coverage",
+      "method": "transform_coverage"
+    },
+    {
+      "schema": "CoordinateLookupParams",
+      "type": "coordinateLookup",
+      "method": "transform_coordinate_lookup"
+    },
+    {
+      "schema": "CrossParams",
+      "type": "cross",
+      "method": "transform_cross"
+    },
+    {
+      "schema": "Displace1DParams",
+      "type": "displace1d",
+      "method": "transform_displace1d"
+    },
+    {
+      "schema": "FlattenDelimitedParams",
+      "type": "flattenDelimited",
+      "method": "transform_flatten_delimited"
+    },
+    {
+      "schema": "FormulaParams",
+      "type": "formula",
+      "method": "transform_formula"
+    },
+    {
+      "schema": "FormulaParams",
+      "type": "formula",
+      "method": "transform_calculate"
+    },
+    {
+      "schema": "LookupParams",
+      "type": "lookup",
+      "method": "transform_lookup"
+    },
+    {
+      "schema": "FilterParams",
+      "type": "filter",
+      "method": "transform_filter"
+    },
+    {
+      "schema": "AxisLabelLayoutParams",
+      "type": "axisLabelLayout",
+      "method": "transform_axis_label_layout"
+    },
+    {
+      "schema": "FilterScoredLabelsParams",
+      "type": "filterScoredLabels",
+      "method": "transform_filter_scored_labels"
+    },
+    {
+      "schema": "FlattenParams",
+      "type": "flatten",
+      "method": "transform_flatten"
+    },
+    {
+      "schema": "FlattenCompressedExonsParams",
+      "type": "flattenCompressedExons",
+      "method": "transform_flatten_compressed_exons"
+    },
+    {
+      "schema": "FlattenCigarParams",
+      "type": "flattenCigar",
+      "method": "transform_flatten_cigar"
+    },
+    {
+      "schema": "FlattenSequenceParams",
+      "type": "flattenSequence",
+      "method": "transform_flatten_sequence"
+    },
+    {
+      "schema": "IdentifierParams",
+      "type": "identifier",
+      "method": "transform_identifier"
+    },
+    {
+      "schema": "LinearizeGenomicCoordinateParams",
+      "type": "linearizeGenomicCoordinate",
+      "method": "transform_linearize_genomic_coordinate"
+    },
+    {
+      "schema": "MeasureTextParams",
+      "type": "measureText",
+      "method": "transform_measure_text"
+    },
+    {
+      "schema": "TruncateTextParams",
+      "type": "truncateText",
+      "method": "transform_truncate_text"
+    },
+    {
+      "schema": "PackLegendLabelsParams",
+      "type": "packLegendLabels",
+      "method": "transform_pack_legend_labels"
+    },
+    {
+      "schema": "MergeFacetsParams",
+      "type": "mergeFacets",
+      "method": "transform_merge_facets"
+    },
+    {
+      "schema": "PileupParams",
+      "type": "pileup",
+      "method": "transform_pileup"
+    },
+    {
+      "schema": "ProjectParams",
+      "type": "project",
+      "method": "transform_project"
+    },
+    {
+      "schema": "RegexExtractParams",
+      "type": "regexExtract",
+      "method": "transform_regex_extract"
+    },
+    {
+      "schema": "RegexFoldParams",
+      "type": "regexFold",
+      "method": "transform_regex_fold"
+    },
+    {
+      "schema": "SampleParams",
+      "type": "sample",
+      "method": "transform_sample"
+    },
+    {
+      "schema": "SetIntersectionParams",
+      "type": "setIntersection",
+      "method": "transform_set_intersection"
+    },
+    {
+      "schema": "StackParams",
+      "type": "stack",
+      "method": "transform_stack"
+    },
+    {
+      "schema": "WindowParams",
+      "type": "window",
+      "method": "transform_window"
+    }
+  ],
+  "lazy_data_sources": [
+    {
+      "type": "bam",
+      "method": "bam"
+    },
+    {
+      "type": "bigbed",
+      "method": "bigbed"
+    },
+    {
+      "type": "bigwig",
+      "method": "bigwig"
+    },
+    {
+      "type": "gff3",
+      "method": "gff3"
+    },
+    {
+      "type": "indexedFasta",
+      "method": "indexed_fasta"
+    },
+    {
+      "type": "tabix",
+      "method": "tabix"
+    },
+    {
+      "type": "vcf",
+      "method": "vcf"
+    }
+  ],
+  "interaction": {
+    "bindings": [
+      {
+        "helper": "binding",
+        "schema": "BindInput",
+        "fixed": {}
+      },
+      {
+        "helper": "binding_checkbox",
+        "schema": "BindCheckbox",
+        "fixed": {
+          "input": "checkbox"
+        }
+      },
+      {
+        "helper": "binding_radio",
+        "schema": "BindRadioSelect",
+        "fixed": {
+          "input": "radio"
+        }
+      },
+      {
+        "helper": "binding_range",
+        "schema": "BindRange",
+        "fixed": {
+          "input": "range"
+        }
+      },
+      {
+        "helper": "binding_select",
+        "schema": "BindRadioSelect",
+        "fixed": {
+          "input": "select"
+        }
+      }
+    ],
+    "parameter_helpers": [
+      {
+        "helper": "ruler",
+        "parameter_schema": "RulerParameter",
+        "config_property": "ruler",
+        "config_schema": "RulerConfig",
+        "fixed": {}
+      },
+      {
+        "helper": "selection_interval",
+        "parameter_schema": "SelectionParameter",
+        "config_property": "select",
+        "config_schema": "IntervalSelectionConfig",
+        "fixed": {
+          "type": "interval"
+        }
+      },
+      {
+        "helper": "selection_point",
+        "parameter_schema": "SelectionParameter",
+        "config_property": "select",
+        "config_schema": "PointSelectionConfig",
+        "fixed": {
+          "type": "point"
+        }
+      }
+    ]
+  },
+  "root_spec_variants": [
+    "mark",
+    "layer",
+    "multiscale",
+    "vconcat",
+    "hconcat",
+    "concat"
+  ]
+}