gebpy 1.1.3__py3-none-any.whl

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Files changed (254) hide show
  1. gebpy/__init__.py +55 -0
  2. gebpy/__pycache__/__init__.cpython-310.pyc +0 -0
  3. gebpy/adapters/__init__.py +0 -0
  4. gebpy/cli/__init__.py +0 -0
  5. gebpy/core/__init__.py +0 -0
  6. gebpy/core/chemistry/__init__.py +0 -0
  7. gebpy/core/chemistry/common.py +1369 -0
  8. gebpy/core/chemistry/elements.py +317 -0
  9. gebpy/core/chemistry/geochemistry.py +1728 -0
  10. gebpy/core/fluids/__init__.py +0 -0
  11. gebpy/core/io/__init__.py +0 -0
  12. gebpy/core/mathematics/__init__.py +0 -0
  13. gebpy/core/minerals/__init__.py +0 -0
  14. gebpy/core/minerals/carbonates.py +412 -0
  15. gebpy/core/minerals/common.py +555 -0
  16. gebpy/core/minerals/config.py +77 -0
  17. gebpy/core/minerals/cyclosilicates.py +0 -0
  18. gebpy/core/minerals/halides.py +0 -0
  19. gebpy/core/minerals/inosilicates.py +0 -0
  20. gebpy/core/minerals/nesosilicates.py +0 -0
  21. gebpy/core/minerals/organics.py +0 -0
  22. gebpy/core/minerals/oxides.py +589 -0
  23. gebpy/core/minerals/phosphates.py +0 -0
  24. gebpy/core/minerals/phospides.py +0 -0
  25. gebpy/core/minerals/phyllosilicates.py +436 -0
  26. gebpy/core/minerals/sorosilicates.py +0 -0
  27. gebpy/core/minerals/sulfates.py +0 -0
  28. gebpy/core/minerals/sulfides.py +459 -0
  29. gebpy/core/minerals/synthesis.py +201 -0
  30. gebpy/core/minerals/tectosilicates.py +433 -0
  31. gebpy/core/physics/__init__.py +0 -0
  32. gebpy/core/physics/common.py +53 -0
  33. gebpy/core/physics/geophysics.py +351 -0
  34. gebpy/core/rocks/__init__.py +0 -0
  35. gebpy/core/rocks/anisotropic_rocks.py +395 -0
  36. gebpy/core/rocks/common.py +95 -0
  37. gebpy/core/rocks/config.py +77 -0
  38. gebpy/core/rocks/isotropic_rocks.py +395 -0
  39. gebpy/core/rocks/sedimentary.py +385 -0
  40. gebpy/core/subsurface/__init__.py +0 -0
  41. gebpy/data_minerals/__init__.py +0 -0
  42. gebpy/data_minerals/albite.yaml +59 -0
  43. gebpy/data_minerals/anatase.yaml +43 -0
  44. gebpy/data_minerals/ankerite.yaml +47 -0
  45. gebpy/data_minerals/annite.yaml +57 -0
  46. gebpy/data_minerals/anorthite.yaml +59 -0
  47. gebpy/data_minerals/antigorite.yaml +53 -0
  48. gebpy/data_minerals/aragonite.yaml +48 -0
  49. gebpy/data_minerals/argutite.yaml +43 -0
  50. gebpy/data_minerals/arsenolite.yaml +40 -0
  51. gebpy/data_minerals/au3oxide.yaml +46 -0
  52. gebpy/data_minerals/avicennite.yaml +40 -0
  53. gebpy/data_minerals/azurite.yaml +53 -0
  54. gebpy/data_minerals/baddeleyite.yaml +49 -0
  55. gebpy/data_minerals/bismite.yaml +49 -0
  56. gebpy/data_minerals/boehmite.yaml +48 -0
  57. gebpy/data_minerals/brookite.yaml +46 -0
  58. gebpy/data_minerals/brucite.yaml +45 -0
  59. gebpy/data_minerals/bunsenite.yaml +40 -0
  60. gebpy/data_minerals/calcite.yaml +45 -0
  61. gebpy/data_minerals/cassiterite.yaml +43 -0
  62. gebpy/data_minerals/cerussite.yaml +48 -0
  63. gebpy/data_minerals/chamosite.yaml +56 -0
  64. gebpy/data_minerals/chlorite.yaml +75 -0
  65. gebpy/data_minerals/chromite.yaml +42 -0
  66. gebpy/data_minerals/chrysotile.yaml +53 -0
  67. gebpy/data_minerals/claudetite.yaml +49 -0
  68. gebpy/data_minerals/clinochlore.yaml +55 -0
  69. gebpy/data_minerals/cochromite.yaml +42 -0
  70. gebpy/data_minerals/corundum.yaml +43 -0
  71. gebpy/data_minerals/crocoite.yaml +51 -0
  72. gebpy/data_minerals/cuprite.yaml +40 -0
  73. gebpy/data_minerals/cuprospinel.yaml +42 -0
  74. gebpy/data_minerals/diaspore.yaml +48 -0
  75. gebpy/data_minerals/dolomite.yaml +47 -0
  76. gebpy/data_minerals/eastonite.yaml +57 -0
  77. gebpy/data_minerals/eskolaite.yaml +43 -0
  78. gebpy/data_minerals/fechlorite.yaml +61 -0
  79. gebpy/data_minerals/fecolumbite.yaml +48 -0
  80. gebpy/data_minerals/ferberite.yaml +51 -0
  81. gebpy/data_minerals/fetantalite.yaml +48 -0
  82. gebpy/data_minerals/franklinite.yaml +42 -0
  83. gebpy/data_minerals/gahnite.yaml +42 -0
  84. gebpy/data_minerals/galaxite.yaml +42 -0
  85. gebpy/data_minerals/geikielite.yaml +45 -0
  86. gebpy/data_minerals/gibbsite.yaml +51 -0
  87. gebpy/data_minerals/glauconite.yaml +69 -0
  88. gebpy/data_minerals/goethite.yaml +48 -0
  89. gebpy/data_minerals/groutite.yaml +48 -0
  90. gebpy/data_minerals/hematite.yaml +43 -0
  91. gebpy/data_minerals/hercynite.yaml +42 -0
  92. gebpy/data_minerals/huebnerite.yaml +51 -0
  93. gebpy/data_minerals/ikaite.yaml +53 -0
  94. gebpy/data_minerals/illite.yaml +55 -0
  95. gebpy/data_minerals/ilmenite.yaml +45 -0
  96. gebpy/data_minerals/jacobsite.yaml +42 -0
  97. gebpy/data_minerals/kalsilite.yaml +47 -0
  98. gebpy/data_minerals/kaolinite.yaml +59 -0
  99. gebpy/data_minerals/karelianite.yaml +43 -0
  100. gebpy/data_minerals/lime.yaml +40 -0
  101. gebpy/data_minerals/litharge.yaml +43 -0
  102. gebpy/data_minerals/magnesiochromite.yaml +42 -0
  103. gebpy/data_minerals/magnesioferrite.yaml +42 -0
  104. gebpy/data_minerals/magnesite.yaml +45 -0
  105. gebpy/data_minerals/magnetite.yaml +41 -0
  106. gebpy/data_minerals/malachite.yaml +53 -0
  107. gebpy/data_minerals/manganite.yaml +51 -0
  108. gebpy/data_minerals/manganochromite.yaml +42 -0
  109. gebpy/data_minerals/manganosite.yaml +40 -0
  110. gebpy/data_minerals/marialite.yaml +49 -0
  111. gebpy/data_minerals/massicot.yaml +46 -0
  112. gebpy/data_minerals/meionite.yaml +49 -0
  113. gebpy/data_minerals/mgchlorite.yaml +61 -0
  114. gebpy/data_minerals/mgcolumbite.yaml +48 -0
  115. gebpy/data_minerals/mgtantalite.yaml +48 -0
  116. gebpy/data_minerals/microcline.yaml +59 -0
  117. gebpy/data_minerals/minium.yaml +44 -0
  118. gebpy/data_minerals/mnchlorite.yaml +61 -0
  119. gebpy/data_minerals/mncolumbite.yaml +48 -0
  120. gebpy/data_minerals/mntantalite.yaml +48 -0
  121. gebpy/data_minerals/monteponite.yaml +40 -0
  122. gebpy/data_minerals/montmorillonite.yaml +77 -0
  123. gebpy/data_minerals/muscovite.yaml +55 -0
  124. gebpy/data_minerals/nanepheline.yaml +47 -0
  125. gebpy/data_minerals/nichlorite.yaml +61 -0
  126. gebpy/data_minerals/nichromite.yaml +42 -0
  127. gebpy/data_minerals/nimite.yaml +55 -0
  128. gebpy/data_minerals/nontronite.yaml +73 -0
  129. gebpy/data_minerals/orthoclase.yaml +53 -0
  130. gebpy/data_minerals/paratellurite.yaml +43 -0
  131. gebpy/data_minerals/pennantite.yaml +61 -0
  132. gebpy/data_minerals/periclase.yaml +40 -0
  133. gebpy/data_minerals/phlogopite.yaml +57 -0
  134. gebpy/data_minerals/plattnerite.yaml +43 -0
  135. gebpy/data_minerals/powellite.yaml +45 -0
  136. gebpy/data_minerals/pyrite.yaml +40 -0
  137. gebpy/data_minerals/pyrolusite.yaml +43 -0
  138. gebpy/data_minerals/pyrophanite.yaml +45 -0
  139. gebpy/data_minerals/pyrophyllite.yaml +59 -0
  140. gebpy/data_minerals/quartz.yaml +43 -0
  141. gebpy/data_minerals/rhodochrosite.yaml +45 -0
  142. gebpy/data_minerals/rutile.yaml +43 -0
  143. gebpy/data_minerals/saponite.yaml +77 -0
  144. gebpy/data_minerals/scheelite.yaml +45 -0
  145. gebpy/data_minerals/scrutinyite.yaml +46 -0
  146. gebpy/data_minerals/senarmontite.yaml +40 -0
  147. gebpy/data_minerals/siderite.yaml +45 -0
  148. gebpy/data_minerals/siderophyllite.yaml +57 -0
  149. gebpy/data_minerals/smithsonite.yaml +45 -0
  150. gebpy/data_minerals/spinel.yaml +42 -0
  151. gebpy/data_minerals/stishovite.yaml +43 -0
  152. gebpy/data_minerals/stolzite.yaml +45 -0
  153. gebpy/data_minerals/talc.yaml +53 -0
  154. gebpy/data_minerals/tistarite.yaml +43 -0
  155. gebpy/data_minerals/trevorite.yaml +42 -0
  156. gebpy/data_minerals/ulvoespinel.yaml +42 -0
  157. gebpy/data_minerals/uraninite.yaml +40 -0
  158. gebpy/data_minerals/valentinite.yaml +46 -0
  159. gebpy/data_minerals/vermiculite.yaml +69 -0
  160. gebpy/data_minerals/wulfenite.yaml +45 -0
  161. gebpy/data_minerals/wustite.yaml +40 -0
  162. gebpy/data_minerals/zincite.yaml +43 -0
  163. gebpy/data_minerals/zincochromite.yaml +42 -0
  164. gebpy/data_rocks/__init__.py +0 -0
  165. gebpy/data_rocks/dolostone.yaml +40 -0
  166. gebpy/data_rocks/limestone.yaml +40 -0
  167. gebpy/data_rocks/marl.yaml +50 -0
  168. gebpy/data_rocks/sandstone.yaml +39 -0
  169. gebpy/data_rocks/shale.yaml +50 -0
  170. gebpy/gebpy_app.py +8732 -0
  171. gebpy/gui/__init__.py +0 -0
  172. gebpy/lib/images/GebPy_Header.png +0 -0
  173. gebpy/lib/images/GebPy_Icon.png +0 -0
  174. gebpy/lib/images/GebPy_Logo.png +0 -0
  175. gebpy/main.py +29 -0
  176. gebpy/modules/__init__.py +0 -0
  177. gebpy/modules/__pycache__/__init__.cpython-310.pyc +0 -0
  178. gebpy/modules/__pycache__/metamorphics.cpython-310.pyc +0 -0
  179. gebpy/modules/__pycache__/silicates.cpython-310.pyc +0 -0
  180. gebpy/modules/carbonates.py +2658 -0
  181. gebpy/modules/chemistry.py +1369 -0
  182. gebpy/modules/core.py +1805 -0
  183. gebpy/modules/elements.py +317 -0
  184. gebpy/modules/evaporites.py +1299 -0
  185. gebpy/modules/exploration.py +1145 -0
  186. gebpy/modules/fluids.py +339 -0
  187. gebpy/modules/geochemistry.py +1727 -0
  188. gebpy/modules/geophysics.py +351 -0
  189. gebpy/modules/gui.py +9093 -0
  190. gebpy/modules/gui_elements.py +145 -0
  191. gebpy/modules/halides.py +485 -0
  192. gebpy/modules/igneous.py +2241 -0
  193. gebpy/modules/metamorphics.py +3222 -0
  194. gebpy/modules/mineralogy.py +442 -0
  195. gebpy/modules/minerals.py +7954 -0
  196. gebpy/modules/ore.py +1648 -0
  197. gebpy/modules/organics.py +530 -0
  198. gebpy/modules/oxides.py +9057 -0
  199. gebpy/modules/petrophysics.py +98 -0
  200. gebpy/modules/phosphates.py +589 -0
  201. gebpy/modules/phospides.py +194 -0
  202. gebpy/modules/plotting.py +619 -0
  203. gebpy/modules/pyllosilicates.py +380 -0
  204. gebpy/modules/sedimentary_rocks.py +908 -0
  205. gebpy/modules/sequences.py +2166 -0
  206. gebpy/modules/series.py +1625 -0
  207. gebpy/modules/silicates.py +11102 -0
  208. gebpy/modules/siliciclastics.py +1846 -0
  209. gebpy/modules/subsurface_2d.py +179 -0
  210. gebpy/modules/sulfates.py +1629 -0
  211. gebpy/modules/sulfides.py +4786 -0
  212. gebpy/plotting/__init__.py +0 -0
  213. gebpy/ui_nb/__init__.py +0 -0
  214. gebpy/user_data/.gitkeep +0 -0
  215. gebpy-1.1.3.dist-info/LICENSE +165 -0
  216. gebpy-1.1.3.dist-info/METADATA +207 -0
  217. gebpy-1.1.3.dist-info/RECORD +254 -0
  218. gebpy-1.1.3.dist-info/WHEEL +5 -0
  219. gebpy-1.1.3.dist-info/entry_points.txt +2 -0
  220. gebpy-1.1.3.dist-info/top_level.txt +1 -0
  221. modules/__init__.py +0 -0
  222. modules/carbonates.py +2658 -0
  223. modules/chemistry.py +1369 -0
  224. modules/core.py +1805 -0
  225. modules/elements.py +317 -0
  226. modules/evaporites.py +1299 -0
  227. modules/exploration.py +765 -0
  228. modules/fluids.py +339 -0
  229. modules/geochemistry.py +1727 -0
  230. modules/geophysics.py +337 -0
  231. modules/gui.py +9093 -0
  232. modules/gui_elements.py +145 -0
  233. modules/halides.py +485 -0
  234. modules/igneous.py +2196 -0
  235. modules/metamorphics.py +2699 -0
  236. modules/mineralogy.py +442 -0
  237. modules/minerals.py +7954 -0
  238. modules/ore.py +1628 -0
  239. modules/organics.py +530 -0
  240. modules/oxides.py +9057 -0
  241. modules/petrophysics.py +98 -0
  242. modules/phosphates.py +589 -0
  243. modules/phospides.py +194 -0
  244. modules/plotting.py +619 -0
  245. modules/pyllosilicates.py +380 -0
  246. modules/sedimentary_rocks.py +908 -0
  247. modules/sequences.py +2166 -0
  248. modules/series.py +1625 -0
  249. modules/silicates.py +11102 -0
  250. modules/siliciclastics.py +1830 -0
  251. modules/subsurface_2d.py +179 -0
  252. modules/sulfates.py +1629 -0
  253. modules/sulfides.py +4786 -0
  254. notebooks/__init__.py +0 -0
@@ -0,0 +1,145 @@
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+ #!/usr/bin/env python
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+ # -*-coding: utf-8 -*-
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+ # ----------------------
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+ # gui_elements.py
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+ # Maximilian Beeskow
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+ # 22.03.2023
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+ # ----------------------
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+ #
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+ ## MODULES
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+ import tkinter as tk
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+ from tkinter import ttk
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+ #
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+ ## CLASSES
14
+ class SimpleElements:
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+ #
16
+ def __init__(self, parent, row_id, column_id, fg, bg, n_rows=1, n_columns=1):
17
+ self.parent = parent
18
+ self.row_id = row_id
19
+ self.column_id = column_id
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+ self.n_rows = n_rows
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+ self.n_columns = n_columns
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+ self.fg = fg
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+ self.bg = bg
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+ #
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+ def create_frame(self, relief=tk.FLAT):
26
+ frm = tk.Frame(self.parent, bg=self.bg, borderwidth=0, highlightthickness=0, relief=relief)
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+ frm.grid(row=self.row_id, column=self.column_id, rowspan=self.n_rows, columnspan=self.n_columns, sticky="nesw")
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+ #
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+ return frm
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+ #
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+ def create_label(self, text, font_option=None, relief=tk.GROOVE, sticky_option="nesw", anchor_option=tk.CENTER):
32
+ if font_option != None:
33
+ lbl = tk.Label(self.parent, text=text, relief=relief, bg=self.bg, fg=self.fg, font=(font_option),
34
+ anchor=anchor_option)
35
+ else:
36
+ lbl = tk.Label(self.parent, text=text, relief=relief, bg=self.bg, fg=self.fg, font=(font_option),
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+ anchor=anchor_option)
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+ #
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+ lbl.grid(row=self.row_id, column=self.column_id, rowspan=self.n_rows, columnspan=self.n_columns,
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+ sticky=sticky_option)
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+ #
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+ return lbl
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+ #
44
+ def create_option_menu(self, var_opt, var_opt_set, opt_list, active_bg="#F9DED7", command=None):
45
+ var_opt.set(var_opt_set)
46
+ if command == None:
47
+ opt_menu = tk.OptionMenu(self.parent, var_opt, *opt_list)
48
+ else:
49
+ opt_menu = tk.OptionMenu(self.parent, var_opt, *opt_list, command=command)
50
+ opt_menu.config(bg=self.bg)
51
+ opt_menu.grid(row=self.row_id, column=self.column_id, rowspan=self.n_rows, columnspan=self.n_columns,
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+ sticky="nesw")
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+ opt_menu.config(bg=self.bg, fg=self.fg, activebackground=active_bg, highlightthickness=0)
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+ opt_menu["menu"].config(bg=self.bg, fg=self.fg, activebackground=active_bg)
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+ #
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+ return opt_menu
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+ #
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+ def create_entry(self, var_entr, var_entr_set=None, width=None, command=None):
59
+ if var_entr_set != None:
60
+ var_entr.set(var_entr_set)
61
+ if width == None:
62
+ entry = tk.Entry(self.parent, textvariable=var_entr, background=self.bg, fg=self.fg, highlightthickness=0)
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+ else:
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+ entry = tk.Entry(self.parent, textvariable=var_entr, background=self.bg, fg=self.fg, highlightthickness=0,
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+ width=width)
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+ entry.grid(row=self.row_id, column=self.column_id, rowspan=self.n_rows, columnspan=self.n_columns,
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+ sticky="nesw")
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+ if command != None:
69
+ entry.bind("<Return>", command)
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+ #
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+ return entry
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+ #
73
+ def create_radiobutton(self, var_rb, value_rb, color_bg, relief=tk.FLAT, command=None, text="", anchor_option=tk.W):
74
+ if command == None:
75
+ rb = tk.Radiobutton(self.parent, text=text, variable=var_rb, value=value_rb, bg=self.bg, fg=self.fg,
76
+ activebackground=self.bg, highlightthickness=0, relief=relief, selectcolor=self.bg,
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+ anchor=anchor_option)
78
+ else:
79
+ rb = tk.Radiobutton(self.parent, text=text, variable=var_rb, value=value_rb, bg=self.bg, fg=self.fg,
80
+ activebackground=self.bg, highlightthickness=0, relief=relief, selectcolor=self.bg,
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+ anchor=anchor_option, command=command)
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+ #
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+ rb.grid(row=self.row_id, column=self.column_id, rowspan=self.n_rows, columnspan=self.n_columns, sticky="nesw")
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+ #
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+ return rb
86
+ #
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+ def create_button(self, text, command=None):
88
+ if command == None:
89
+ btn = tk.Button(
90
+ self.parent, text=text, bg=self.bg, fg=self.fg, activebackground="#F9DED7", highlightbackground=self.bg,
91
+ highlightthickness=0)
92
+ else:
93
+ btn = tk.Button(
94
+ self.parent, text=text, bg=self.bg, fg=self.fg, activebackground="#F9DED7", highlightbackground=self.bg,
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+ highlightthickness=0, command=command)
96
+ #
97
+ btn.grid(row=self.row_id, column=self.column_id, rowspan=self.n_rows, columnspan=self.n_columns, sticky="nesw")
98
+ #
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+ return btn
100
+ #
101
+ def create_checkbox(self, text, var_cb, command=None):
102
+ if command == None:
103
+ cb = tk.Checkbutton(self.parent, text=text, variable=var_cb, bg=self.bg, fg=self.fg,
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+ activebackground="#F9DED7", highlightbackground=self.bg, highlightthickness=0)
105
+ else:
106
+ cb = tk.Checkbutton(self.parent, text=text, variable=var_cb, bg=self.bg, fg=self.fg,
107
+ activebackground="#F9DED7", highlightbackground=self.bg, highlightthickness=0,
108
+ command=command)
109
+ cb.grid(row=self.row_id, column=self.column_id, rowspan=self.n_rows, columnspan=self.n_columns, sticky="nesw")
110
+ #
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+ return cb
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+ #
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+ def create_treeview(self, n_categories=2, text_1="Ratio", text_2="\u03BC", width_1 = 90, width_2 = 90, text_n=[],
114
+ width_n=[], individual=False):
115
+ ttk.Style().configure("Treeview", background=self.bg, foreground=self.fg, fieldbackground=self.bg)
116
+ style = ttk.Style()
117
+ style.configure("Treeview.Heading", background=self.bg, pressed_color=self.bg,
118
+ highlight_color=self.bg, foreground=self.fg)
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+ #
120
+ if n_categories == 2 and individual == False:
121
+ columns = ("#1", "#2")
122
+ treeview = ttk.Treeview(self.parent, columns=columns, show="headings")
123
+ treeview.heading("#1", text=text_1)
124
+ treeview.column("#1", minwidth=0, width=width_1, stretch=tk.NO, anchor=tk.CENTER)
125
+ treeview.heading("#2", text=text_2)
126
+ treeview.column("#2", minwidth=0, width=width_2, stretch=tk.YES, anchor=tk.CENTER)
127
+ treeview.grid(row=self.row_id, column=self.column_id, rowspan=self.n_rows, columnspan=self.n_columns,
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+ sticky="nesw")
129
+ #
130
+ if n_categories > 1 and individual == True:
131
+ columns = []
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+ for n in range(n_categories):
133
+ var_i = "#" + str(n + 1)
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+ columns.append(var_i)
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+ #
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+ treeview = ttk.Treeview(self.parent, columns=columns, show="headings")
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+ #
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+ for index, element in enumerate(columns):
139
+ treeview.heading(element, text=text_n[index])
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+ treeview.column(element, minwidth=0, width=width_n[index], stretch=tk.NO, anchor=tk.CENTER)
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+ #
142
+ treeview.grid(row=self.row_id, column=self.column_id, rowspan=self.n_rows, columnspan=self.n_columns,
143
+ sticky="nesw")
144
+ #
145
+ return treeview
@@ -0,0 +1,485 @@
1
+ #!/usr/bin/env python
2
+ # -*-coding: utf-8 -*-
3
+
4
+ # -----------------------------------------------
5
+
6
+ # Name: halides.py
7
+ # Author: Maximilian A. Beeskow
8
+ # Version: 1.0
9
+ # Date: 20.09.2022
10
+
11
+ # -----------------------------------------------
12
+
13
+ # MODULES
14
+ import numpy as np
15
+ import random as rd
16
+ from modules.chemistry import PeriodicSystem, DataProcessing
17
+ from modules.minerals import CrystalPhysics
18
+ from modules.geophysics import BoreholeGeophysics as bg
19
+ from modules.geophysics import WellLog as wg
20
+ from modules.geochemistry import MineralChemistry
21
+
22
+ # Halogenes
23
+ class Halides:
24
+ """ Class that generates geophysical and geochemical data of halogene minerals"""
25
+ #
26
+ def __init__(self, traces_list=[], impurity="pure", dict=False, mineral=None):
27
+ self.traces_list = traces_list
28
+ self.impurity = impurity
29
+ self.dict = dict
30
+ self.mineral = mineral
31
+ #
32
+ def generate_dataset(self, number):
33
+ dataset = {}
34
+ #
35
+ for index in range(number):
36
+ if self.mineral == "Halite":
37
+ data_mineral = self.create_halite()
38
+ elif self.mineral == "Fluorite":
39
+ data_mineral = self.create_fluorite()
40
+ elif self.mineral == "Sylvite":
41
+ data_mineral = self.create_sylvite()
42
+ elif self.mineral == "Carnallite":
43
+ data_mineral = self.create_carnallite()
44
+ #
45
+ for key, value in data_mineral.items():
46
+ if key in ["M", "rho", "rho_e", "V", "vP", "vS", "vP/vS", "K", "G", "E", "nu", "GR", "PE", "U",
47
+ "p"]:
48
+ if key not in dataset:
49
+ dataset[key] = [value]
50
+ else:
51
+ dataset[key].append(value)
52
+ elif key in ["mineral", "state", "trace elements"] and key not in dataset:
53
+ dataset[key] = value
54
+ elif key in ["chemistry"]:
55
+ if key not in dataset:
56
+ dataset[key] = {}
57
+ for key_2, value_2 in value.items():
58
+ dataset[key][key_2] = [value_2]
59
+ else:
60
+ for key_2, value_2 in value.items():
61
+ dataset[key][key_2].append(value_2)
62
+ #
63
+ return dataset
64
+ #
65
+ def create_halite(self): # NaCl
66
+ # Major elements
67
+ sodium = PeriodicSystem(name="Na").get_data()
68
+ chlorine = PeriodicSystem(name="Cl").get_data()
69
+ majors_name = ["Na", "Cl"]
70
+ majors_data = np.array([["Na", sodium[1], 1, sodium[2]], ["Cl", chlorine[1], 1, chlorine[2]]], dtype=object)
71
+ # Minor elements
72
+ traces_data = []
73
+ if len(self.traces_list) > 0:
74
+ self.impurity = "impure"
75
+ if self.impurity == "random":
76
+ self.traces_list = []
77
+ minors = ["I", "Br", "Fe", "O"]
78
+ n = rd.randint(1, len(minors))
79
+ while len(self.traces_list) < n:
80
+ selection = rd.choice(minors)
81
+ if selection not in self.traces_list and selection not in majors_name:
82
+ self.traces_list.append(selection)
83
+ else:
84
+ continue
85
+ traces = [PeriodicSystem(name=i).get_data() for i in self.traces_list]
86
+ x_traces = [round(rd.uniform(0., 0.001), 6) for i in range(len(self.traces_list))]
87
+ for i in range(len(self.traces_list)):
88
+ traces_data.append([str(self.traces_list[i]), int(traces[i][1]), float(x_traces[i])])
89
+ if len(traces_data) > 0:
90
+ traces_data = np.array(traces_data, dtype=object)
91
+ traces_data = traces_data[traces_data[:, 1].argsort()]
92
+ #
93
+ data = []
94
+ #
95
+ mineral = "Hl"
96
+ #
97
+ # Molar mass
98
+ molar_mass_pure = sodium[2] + chlorine[2]
99
+ molar_mass, amounts = MineralChemistry(w_traces=traces_data, molar_mass_pure=molar_mass_pure,
100
+ majors=majors_data).calculate_molar_mass()
101
+ element = [PeriodicSystem(name=amounts[i][0]).get_data() for i in range(len(amounts))]
102
+ # Density
103
+ dataV = CrystalPhysics([[5.6404], [], "cubic"])
104
+ V = dataV.calculate_volume()
105
+ dataRho = CrystalPhysics([molar_mass, 4, V])
106
+ rho = dataRho.calculate_bulk_density()
107
+ rho_e = wg(amounts=amounts, elements=element, rho_b=rho).calculate_electron_density()
108
+ # Bulk modulus
109
+ K = 23*10**9
110
+ # Shear modulus
111
+ G = 14.33*10**9
112
+ # Young's modulus
113
+ E = (9*K*G)/(3*K + G)
114
+ # Poisson's ratio
115
+ nu = (3*K - 2*G)/(2*(3*K + G))
116
+ # vP/vS
117
+ vPvS = ((K + 4/3*G)/G)**0.5
118
+ # P-wave velocity
119
+ vP = ((K + 4/3*G)/rho)**0.5
120
+ # S-wave velocity
121
+ vS = (G/rho)**0.5
122
+ # Gamma ray
123
+ gamma_ray = wg(amounts=amounts, elements=element).calculate_gr()
124
+ # Photoelectricity
125
+ pe = wg(amounts=amounts, elements=element).calculate_pe()
126
+ U = pe*rho_e*10**(-3)
127
+ # Electrical resistivity
128
+ p = 5*10**8
129
+ #
130
+ if self.dict == False:
131
+ data.append(mineral)
132
+ data.append(round(molar_mass, 3))
133
+ data.append(round(rho, 2))
134
+ data.append([round(K*10**(-9), 2), round(G*10**(-9), 2), round(E*10**(-9), 2), round(nu, 4)])
135
+ data.append([round(vP, 2), round(vS, 2), round(vPvS, 2)])
136
+ data.append([round(gamma_ray, 2), round(pe, 2), round(U, 2), p])
137
+ data.append(amounts)
138
+ #
139
+ return data
140
+ else:
141
+ #
142
+ results = {}
143
+ results["mineral"] = mineral
144
+ results["M"] = molar_mass
145
+ element_list = np.array(amounts)[:, 0]
146
+ results["chemistry"] = {}
147
+ for index, element in enumerate(element_list, start=0):
148
+ results["chemistry"][element] = amounts[index][2]
149
+ results["rho"] = round(rho, 4)
150
+ results["rho_e"] = round(rho_e, 4)
151
+ results["V"] = round(V, 4)
152
+ results["vP"] = round(vP, 4)
153
+ results["vS"] = round(vS, 4)
154
+ results["vP/vS"] = round(vPvS, 4)
155
+ results["G"] = round(G*10**(-9), 4)
156
+ results["K"] = round(K*10**(-9), 4)
157
+ results["E"] = round(E*10**(-9), 4)
158
+ results["nu"] = round(nu, 4)
159
+ results["GR"] = round(gamma_ray, 4)
160
+ results["PE"] = round(pe, 4)
161
+ results["U"] = round(U, 4)
162
+ if p != None:
163
+ results["p"] = round(p, 4)
164
+ else:
165
+ results["p"] = p
166
+ #
167
+ return results
168
+ #
169
+ def create_sylvite(self): # KCl
170
+ # Major elements
171
+ potassium = PeriodicSystem(name="K").get_data()
172
+ chlorine = PeriodicSystem(name="Cl").get_data()
173
+ majors_name = ["K", "Cl"]
174
+ majors_data = np.array([["K", potassium[1], 1, potassium[2]], ["Cl", chlorine[1], 1, chlorine[2]]], dtype=object)
175
+ # Minor elements
176
+ traces_data = []
177
+ if len(self.traces_list) > 0:
178
+ self.impurity = "impure"
179
+ if self.impurity == "random":
180
+ self.traces_list = []
181
+ minors = ["Br", "C", "O"]
182
+ n = rd.randint(1, len(minors))
183
+ while len(self.traces_list) < n:
184
+ selection = rd.choice(minors)
185
+ if selection not in self.traces_list and selection not in majors_name:
186
+ self.traces_list.append(selection)
187
+ else:
188
+ continue
189
+ traces = [PeriodicSystem(name=i).get_data() for i in self.traces_list]
190
+ x_traces = [round(rd.uniform(0., 0.001), 6) for i in range(len(self.traces_list))]
191
+ for i in range(len(self.traces_list)):
192
+ traces_data.append([str(self.traces_list[i]), int(traces[i][1]), float(x_traces[i])])
193
+ if len(traces_data) > 0:
194
+ traces_data = np.array(traces_data, dtype=object)
195
+ traces_data = traces_data[traces_data[:, 1].argsort()]
196
+ #
197
+ data = []
198
+ #
199
+ mineral = "Syl"
200
+ #
201
+ # Molar mass
202
+ molar_mass_pure = potassium[2] + chlorine[2]
203
+ molar_mass, amounts = MineralChemistry(w_traces=traces_data, molar_mass_pure=molar_mass_pure,
204
+ majors=majors_data).calculate_molar_mass()
205
+ element = [PeriodicSystem(name=amounts[i][0]).get_data() for i in range(len(amounts))]
206
+ # Density
207
+ dataV = CrystalPhysics([[6.2931], [], "cubic"])
208
+ V = dataV.calculate_volume()
209
+ dataRho = CrystalPhysics([molar_mass, 4, V])
210
+ rho = dataRho.calculate_bulk_density()
211
+ rho_e = wg(amounts=amounts, elements=element, rho_b=rho).calculate_electron_density()
212
+ # Bulk modulus
213
+ K = 16*10**9
214
+ # Shear modulus
215
+ G = 9*10**9
216
+ # Young's modulus
217
+ E = (9*K*G)/(3*K + G)
218
+ # Poisson's ratio
219
+ nu = (3*K - 2*G)/(2*(3*K + G))
220
+ # vP/vS
221
+ vPvS = ((K + 4/3*G)/G)**0.5
222
+ # P-wave velocity
223
+ vP = ((K + 4/3*G)/rho)**0.5
224
+ # S-wave velocity
225
+ vS = (G/rho)**0.5
226
+ # Gamma ray
227
+ gamma_ray = wg(amounts=amounts, elements=element).calculate_gr()
228
+ # Photoelectricity
229
+ pe = wg(amounts=amounts, elements=element).calculate_pe()
230
+ U = pe*rho_e*10**(-3)
231
+ # Electrical resistivity
232
+ p = None
233
+ #
234
+ if self.dict == False:
235
+ data.append(mineral)
236
+ data.append(round(molar_mass, 3))
237
+ data.append(round(rho, 2))
238
+ data.append([round(K*10**(-9), 2), round(G*10**(-9), 2), round(E*10**(-9), 2), round(nu, 4)])
239
+ data.append([round(vP, 2), round(vS, 2), round(vPvS, 2)])
240
+ data.append([round(gamma_ray, 2), round(pe, 2), round(U, 2), p])
241
+ data.append(amounts)
242
+ #
243
+ return data
244
+ else:
245
+ #
246
+ results = {}
247
+ results["mineral"] = mineral
248
+ results["M"] = molar_mass
249
+ element_list = np.array(amounts)[:, 0]
250
+ results["chemistry"] = {}
251
+ for index, element in enumerate(element_list, start=0):
252
+ results["chemistry"][element] = amounts[index][2]
253
+ results["rho"] = round(rho, 4)
254
+ results["rho_e"] = round(rho_e, 4)
255
+ results["V"] = round(V, 4)
256
+ results["vP"] = round(vP, 4)
257
+ results["vS"] = round(vS, 4)
258
+ results["vP/vS"] = round(vPvS, 4)
259
+ results["G"] = round(G*10**(-9), 4)
260
+ results["K"] = round(K*10**(-9), 4)
261
+ results["E"] = round(E*10**(-9), 4)
262
+ results["nu"] = round(nu, 4)
263
+ results["GR"] = round(gamma_ray, 4)
264
+ results["PE"] = round(pe, 4)
265
+ results["U"] = round(U, 4)
266
+ if p != None:
267
+ results["p"] = round(p, 4)
268
+ else:
269
+ results["p"] = p
270
+ #
271
+ return results
272
+ #
273
+ def create_fluorite(self): # CaF2
274
+ # Major elements
275
+ flourine = PeriodicSystem(name="F").get_data()
276
+ calcium = PeriodicSystem(name="Ca").get_data()
277
+ majors_name = ["F", "Ca"]
278
+ majors_data = np.array([["F", flourine[1], 2, flourine[2]], ["Ca", calcium[1], 1, calcium[2]]], dtype=object)
279
+ # Minor elements
280
+ traces_data = []
281
+ if len(self.traces_list) > 0:
282
+ self.impurity = "impure"
283
+ if self.impurity == "random":
284
+ self.traces_list = []
285
+ minors = ["Y", "Ce", "Si", "Al", "Fe", "Mg", "Eu", "Sm", "O", "C", "Cl"]
286
+ n = rd.randint(1, len(minors))
287
+ while len(self.traces_list) < n:
288
+ selection = rd.choice(minors)
289
+ if selection not in self.traces_list and selection not in majors_name:
290
+ self.traces_list.append(selection)
291
+ else:
292
+ continue
293
+ traces = [PeriodicSystem(name=i).get_data() for i in self.traces_list]
294
+ x_traces = [round(rd.uniform(0., 0.001), 6) for i in range(len(self.traces_list))]
295
+ for i in range(len(self.traces_list)):
296
+ traces_data.append([str(self.traces_list[i]), int(traces[i][1]), float(x_traces[i])])
297
+ if len(traces_data) > 0:
298
+ traces_data = np.array(traces_data, dtype=object)
299
+ traces_data = traces_data[traces_data[:, 1].argsort()]
300
+ #
301
+ data = []
302
+ #
303
+ mineral = "Fl"
304
+ #
305
+ # Molar mass
306
+ molar_mass_pure = calcium[2] + 2*flourine[2]
307
+ molar_mass, amounts = MineralChemistry(w_traces=traces_data, molar_mass_pure=molar_mass_pure,
308
+ majors=majors_data).calculate_molar_mass()
309
+ element = [PeriodicSystem(name=amounts[i][0]).get_data() for i in range(len(amounts))]
310
+ # Density
311
+ dataV = CrystalPhysics([[5.4626], [], "cubic"])
312
+ V = dataV.calculate_volume()
313
+ dataRho = CrystalPhysics([molar_mass, 4, V])
314
+ rho = dataRho.calculate_bulk_density()
315
+ rho_e = wg(amounts=amounts, elements=element, rho_b=rho).calculate_electron_density()
316
+ # Bulk modulus
317
+ K = 77*10**9
318
+ # Shear modulus
319
+ G = 38*10**9
320
+ # Young's modulus
321
+ E = (9*K*G)/(3*K + G)
322
+ # Poisson's ratio
323
+ nu = (3*K - 2*G)/(2*(3*K + G))
324
+ # vP/vS
325
+ vPvS = ((K + 4/3*G)/G)**0.5
326
+ # P-wave velocity
327
+ vP = ((K + 4/3*G)/rho)**0.5
328
+ # S-wave velocity
329
+ vS = (G/rho)**0.5
330
+ # Gamma ray
331
+ gamma_ray = wg(amounts=amounts, elements=element).calculate_gr()
332
+ # Photoelectricity
333
+ pe = wg(amounts=amounts, elements=element).calculate_pe()
334
+ U = pe*rho_e*10**(-3)
335
+ # Electrical resistivity
336
+ p = None
337
+ #
338
+ if self.dict == False:
339
+ data.append(mineral)
340
+ data.append(round(molar_mass, 3))
341
+ data.append(round(rho, 2))
342
+ data.append([round(K*10**(-9), 2), round(G*10**(-9), 2), round(E*10**(-9), 2), round(nu, 4)])
343
+ data.append([round(vP, 2), round(vS, 2), round(vPvS, 2)])
344
+ data.append([round(gamma_ray, 2), round(pe, 2), round(U, 2), p])
345
+ data.append(amounts)
346
+ #
347
+ return data
348
+ else:
349
+ #
350
+ results = {}
351
+ results["mineral"] = mineral
352
+ results["M"] = molar_mass
353
+ element_list = np.array(amounts)[:, 0]
354
+ results["chemistry"] = {}
355
+ for index, element in enumerate(element_list, start=0):
356
+ results["chemistry"][element] = amounts[index][2]
357
+ results["rho"] = round(rho, 4)
358
+ results["rho_e"] = round(rho_e, 4)
359
+ results["V"] = round(V, 4)
360
+ results["vP"] = round(vP, 4)
361
+ results["vS"] = round(vS, 4)
362
+ results["vP/vS"] = round(vPvS, 4)
363
+ results["G"] = round(G*10**(-9), 4)
364
+ results["K"] = round(K*10**(-9), 4)
365
+ results["E"] = round(E*10**(-9), 4)
366
+ results["nu"] = round(nu, 4)
367
+ results["GR"] = round(gamma_ray, 4)
368
+ results["PE"] = round(pe, 4)
369
+ results["U"] = round(U, 4)
370
+ if p != None:
371
+ results["p"] = round(p, 4)
372
+ else:
373
+ results["p"] = p
374
+ #
375
+ return results
376
+ #
377
+ def create_carnallite(self): # K Mg Cl3 * 6(H2O)
378
+ # Major elements
379
+ hydrogen = PeriodicSystem(name="H").get_data()
380
+ oxygen = PeriodicSystem(name="O").get_data()
381
+ magnesium = PeriodicSystem(name="Mg").get_data()
382
+ chlorine = PeriodicSystem(name="Cl").get_data()
383
+ potassium = PeriodicSystem(name="K").get_data()
384
+ majors_name = ["H", "O", "Mg", "Cl", "K"]
385
+ majors_data = np.array(
386
+ [["H", hydrogen[1], 12, hydrogen[2]], ["O", oxygen[1], 6, oxygen[2]],
387
+ ["Mg", magnesium[1], 1, magnesium[2]], ["Cl", chlorine[1], 3, chlorine[2]],
388
+ ["K", potassium[1], 1, potassium[2]]], dtype=object)
389
+ # Minor elements
390
+ traces_data = []
391
+ if len(self.traces_list) > 0:
392
+ self.impurity = "impure"
393
+ if self.impurity == "random":
394
+ self.traces_list = []
395
+ minors = ["Br" ,"Rb", "Cs", "Tl", "Fe"]
396
+ n = rd.randint(1, len(minors))
397
+ while len(self.traces_list) < n:
398
+ selection = rd.choice(minors)
399
+ if selection not in self.traces_list and selection not in majors_name:
400
+ self.traces_list.append(selection)
401
+ else:
402
+ continue
403
+ traces = [PeriodicSystem(name=i).get_data() for i in self.traces_list]
404
+ x_traces = [round(rd.uniform(0., 0.001), 6) for i in range(len(self.traces_list))]
405
+ for i in range(len(self.traces_list)):
406
+ traces_data.append([str(self.traces_list[i]), int(traces[i][1]), float(x_traces[i])])
407
+ if len(traces_data) > 0:
408
+ traces_data = np.array(traces_data, dtype=object)
409
+ traces_data = traces_data[traces_data[:, 1].argsort()]
410
+ #
411
+ data = []
412
+ #
413
+ mineral = "Car"
414
+ #
415
+ # Molar mass
416
+ molar_mass_pure = potassium[2] + magnesium[2] + 3*chlorine[2] + 6*(2*hydrogen[2] + oxygen[2])
417
+ molar_mass, amounts = MineralChemistry(w_traces=traces_data, molar_mass_pure=molar_mass_pure,
418
+ majors=majors_data).calculate_molar_mass()
419
+ element = [PeriodicSystem(name=amounts[i][0]).get_data() for i in range(len(amounts))]
420
+ # Density
421
+ dataV = CrystalPhysics([[9.56, 16.05, 22.56], [], "orthorhombic"])
422
+ V = dataV.calculate_volume()
423
+ dataRho = CrystalPhysics([molar_mass, 12, V])
424
+ rho = dataRho.calculate_bulk_density()
425
+ rho_e = wg(amounts=amounts, elements=element, rho_b=rho).calculate_electron_density()
426
+ # Bulk modulus
427
+ K = 31*10**9 # estimated
428
+ # Shear modulus
429
+ G = 16*10**9 # estimated
430
+ # Young's modulus
431
+ E = (9*K*G)/(3*K + G)
432
+ # Poisson's ratio
433
+ nu = (3*K - 2*G)/(2*(3*K + G))
434
+ # vP/vS
435
+ vPvS = ((K + 4/3*G)/G)**0.5
436
+ # P-wave velocity
437
+ vP = ((K + 4/3*G)/rho)**0.5
438
+ # S-wave velocity
439
+ vS = (G/rho)**0.5
440
+ # Gamma ray
441
+ gamma_ray = wg(amounts=amounts, elements=element).calculate_gr()
442
+ # Photoelectricity
443
+ pe = wg(amounts=amounts, elements=element).calculate_pe()
444
+ U = pe*rho_e*10**(-3)
445
+ # Electrical resistivity
446
+ p = None
447
+ #
448
+ if self.dict == False:
449
+ data.append(mineral)
450
+ data.append(round(molar_mass, 3))
451
+ data.append(round(rho, 2))
452
+ data.append([round(K*10**(-9), 2), round(G*10**(-9), 2), round(E*10**(-9), 2), round(nu, 4)])
453
+ data.append([round(vP, 2), round(vS, 2), round(vPvS, 2)])
454
+ data.append([round(gamma_ray, 2), round(pe, 2), round(U, 2), p])
455
+ data.append(amounts)
456
+ #
457
+ return data
458
+ else:
459
+ #
460
+ results = {}
461
+ results["mineral"] = mineral
462
+ results["M"] = molar_mass
463
+ element_list = np.array(amounts)[:, 0]
464
+ results["chemistry"] = {}
465
+ for index, element in enumerate(element_list, start=0):
466
+ results["chemistry"][element] = amounts[index][2]
467
+ results["rho"] = round(rho, 4)
468
+ results["rho_e"] = round(rho_e, 4)
469
+ results["V"] = round(V, 4)
470
+ results["vP"] = round(vP, 4)
471
+ results["vS"] = round(vS, 4)
472
+ results["vP/vS"] = round(vPvS, 4)
473
+ results["G"] = round(G*10**(-9), 4)
474
+ results["K"] = round(K*10**(-9), 4)
475
+ results["E"] = round(E*10**(-9), 4)
476
+ results["nu"] = round(nu, 4)
477
+ results["GR"] = round(gamma_ray, 4)
478
+ results["PE"] = round(pe, 4)
479
+ results["U"] = round(U, 4)
480
+ if p != None:
481
+ results["p"] = round(p, 4)
482
+ else:
483
+ results["p"] = p
484
+ #
485
+ return results