endoreg-db 0.8.6.1__py3-none-any.whl → 0.8.8.9__py3-none-any.whl

endoreg_db/data/tag/requirement_set_tags.yaml

@@ -9,3 +9,24 @@
 - model: endoreg_db.tag
   fields:
     name: "colonoscopy_austria"
+
+# User role tags for requirement set filtering
+- model: endoreg_db.tag
+  fields:
+    name: "Gastroenterologist"
+
+- model: endoreg_db.tag
+  fields:
+    name: "Student"
+
+- model: endoreg_db.tag
+  fields:
+    name: "Professor"
+
+- model: endoreg_db.tag
+  fields:
+    name: "Terminology Expert"
+
+- model: endoreg_db.tag
+  fields:
+    name: "Default Prototype"

endoreg_db/exceptions.py

@@ -1,3 +1,5 @@
+import logging
+logger = logging.getLogger(__name__)
 
 
 class InsufficientStorageError(Exception):
@@ -7,7 +9,7 @@ class InsufficientStorageError(Exception):
         super().__init__(message)
         self.required_space = required_space
         self.available_space = available_space
-
+        
 
 class TranscodingError(Exception):
     """Raised when video transcoding fails."""
@@ -16,4 +18,4 @@ class TranscodingError(Exception):
 
 class VideoProcessingError(Exception):
     """Base class for video processing errors."""
-    pass
+    pass

endoreg_db/forms/examination_form.py

@@ -1,5 +1,5 @@
 from django import forms
-from endoreg_db.models.examination.examination import Examination
+from endoreg_db.models.medical import Examination
 
 class ExaminationForm(forms.ModelForm):
     class Meta:

endoreg_db/helpers/data_loader.py

@@ -1,183 +1,258 @@
 """
 Data Loader Helpers and others
 """
-from django.core.management import call_command
+
 from pathlib import Path
+
+from django.core.management import call_command
+
 ASSET_DIR = Path(__file__).resolve().parent.parent / "assets"
 
-def load_default_ai_model(): 
+
+def load_default_ai_model():
     """
     Loads the default AI model into the database using a predefined checkpoint file.
-    
+
     This function constructs the path to the default AI model checkpoint and invokes the
     Django management command `create_multilabel_model_meta` to register the model.
     """
-    model_path = f"{ASSET_DIR.as_posix()}/colo_segmentation_RegNetX800MF_6.ckpt"
+    model_path = f"{ASSET_DIR.as_posix()}/colo_segmentation_RegNetX800MF_6.safetensors"
     # Pass arguments individually to call_command
-    call_command(
-        "create_multilabel_model_meta",
-        "--model_path",
-        model_path
-    )
+    call_command("create_multilabel_model_meta", "--model_path", model_path)
+
 
 def load_qualification_data():
     """
     Loads qualification data into the database using the corresponding Django management command.
     """
-    call_command("load_qualification_data", )
+    call_command(
+        "load_qualification_data",
+    )
+
 
 def load_shift_data():
     """
     Loads shift data into the database by invoking the corresponding Django management command.
     """
-    call_command("load_shift_data", )
+    call_command(
+        "load_shift_data",
+    )
+
 
 def load_base_db_data():
     """
     Loads the base database data by invoking the corresponding Django management command.
     """
-    call_command("load_base_db_data", )
+    call_command(
+        "load_base_db_data",
+    )
+
 
 def load_information_source():
     """
     Loads information source data into the database by invoking the corresponding Django management command.
     """
-    call_command("load_information_source", )
+    call_command(
+        "load_information_source",
+    )
+
 
 def load_risk_data():
     """
     Loads risk data into the database by invoking the corresponding Django management command.
     """
-    call_command("load_risk_data", )
+    call_command(
+        "load_risk_data",
+    )
+
 
 def load_center_data():
     """
     Loads center data into the database by invoking the corresponding Django management command.
     """
-    call_command("load_center_data", )
+    call_command(
+        "load_center_data",
+    )
+
 
 def load_endoscope_data():
     """
     Loads endoscope data into the database by invoking the corresponding Django management command.
     """
-    call_command("load_endoscope_data", )
+    call_command(
+        "load_endoscope_data",
+    )
+
 
 def load_distribution_data():
     """
     Loads distribution data into the database by invoking the corresponding Django management command.
     """
-    call_command("load_distribution_data", )
+    call_command(
+        "load_distribution_data",
+    )
+
 
 def load_gender_data():
     """
     Loads gender data into the database by invoking the corresponding Django management command.
     """
-    call_command("load_gender_data", )
+    call_command(
+        "load_gender_data",
+    )
+
 
 def load_report_reader_flag_data():
     """
     Loads the report reader flag data into the database using the corresponding management command.
     """
-    call_command("load_report_reader_flag_data", )
-    
+    call_command(
+        "load_report_reader_flag_data",
+    )
+
+
 def load_pdf_type_data():
     """
-    Loads PDF type data into the database by invoking the corresponding Django management command.
+    Loads report type data into the database by invoking the corresponding Django management command.
     """
-    call_command("load_pdf_type_data", )
-    
+    call_command(
+        "load_pdf_type_data",
+    )
+
+
 def load_unit_data():
     """
     Loads unit data into the database by invoking the corresponding Django management command.
     """
-    call_command("load_unit_data", )
-    
+    call_command(
+        "load_unit_data",
+    )
+
+
 def load_disease_data():
     """
     Loads disease data into the database using the corresponding Django management command.
     """
-    call_command("load_disease_data", )
-    
+    call_command(
+        "load_disease_data",
+    )
+
+
 def load_event_data():
     """
     Loads event data into the database by invoking the corresponding Django management command.
     """
-    call_command("load_event_data", )
-    
+    call_command(
+        "load_event_data",
+    )
+
+
 def load_organ_data():
     """
     Loads organ data into the database by invoking the corresponding Django management command.
     """
-    call_command("load_organ_data", )
-    
+    call_command(
+        "load_organ_data",
+    )
+
+
 def load_contraindication_data():
     """
     Loads contraindication data into the database using the corresponding management command.
     """
-    call_command("load_contraindication_data", )
-    
+    call_command(
+        "load_contraindication_data",
+    )
+
+
 def load_examination_data():
     """
     Loads examination data into the database using the corresponding Django management command.
     """
-    call_command("load_examination_data", )
-    
+    call_command(
+        "load_examination_data",
+    )
+
+
 def load_lab_value_data():
     """
     Loads laboratory value data into the database using the corresponding Django management command.
     """
-    call_command("load_lab_value_data", )
-    
+    call_command(
+        "load_lab_value_data",
+    )
+
+
 def load_finding_data():
     """
     Loads finding data into the database by invoking the corresponding Django management command.
     """
-    call_command("load_finding_data", )
-    
+    call_command(
+        "load_finding_data",
+    )
+
+
 def load_examination_indication_data():
     """
     Loads examination indication data into the database using the corresponding Django management command.
     """
-    call_command("load_examination_indication_data", )
-    
+    call_command(
+        "load_examination_indication_data",
+    )
+
+
 def load_medication_data():
     """
     Loads medication data into the database using the corresponding Django management command.
     """
-    call_command("load_medication_data", )
+    call_command(
+        "load_medication_data",
+    )
 
-def load_requirement_data():
 
+def load_requirement_data():
     """
     Loads requirement data into the database by invoking the corresponding Django management command.
     """
-    call_command("load_requirement_data", )
+    call_command(
+        "load_requirement_data",
+    )
+
 
 def load_ai_model_label_data():
     """
     Loads AI model label data into the database by invoking the corresponding Django management command.
     """
-    call_command("load_ai_model_label_data", )
+    call_command(
+        "load_ai_model_label_data",
+    )
+
 
-def load_ai_model_data():    
+def load_ai_model_data():
     """
     Loads AI model data into the database by invoking the corresponding Django management command.
     """
-    call_command("load_ai_model_data", )
+    call_command(
+        "load_ai_model_data",
+    )
+
 
 def load_green_endoscopy_wuerzburg_data():
     """
     Loads the Green Endoscopy Wuerzburg dataset into the database using the corresponding Django management command.
     """
-    call_command("load_green_endoscopy_wuerzburg_data", )
+    call_command(
+        "load_green_endoscopy_wuerzburg_data",
+    )
+
 
 def load_data():
     """
     Loads all predefined data sets into the database in the required sequence.
-    
+
     Calls individual data loading functions in a specific order to ensure that dependencies between data sets are respected.
     """
-    
+
     load_information_source()
     load_risk_data()
     load_center_data()
@@ -203,6 +278,3 @@ def load_data():
     load_ai_model_data()
 
     load_green_endoscopy_wuerzburg_data()
-
-    
-