endoreg-db 0.8.6.1__py3-none-any.whl → 0.8.8.9__py3-none-any.whl

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  1. endoreg_db/authz/auth.py +74 -0
  2. endoreg_db/authz/backends.py +168 -0
  3. endoreg_db/authz/management/commands/list_routes.py +18 -0
  4. endoreg_db/authz/middleware.py +83 -0
  5. endoreg_db/authz/permissions.py +127 -0
  6. endoreg_db/authz/policy.py +218 -0
  7. endoreg_db/authz/views_auth.py +66 -0
  8. endoreg_db/config/env.py +13 -8
  9. endoreg_db/data/__init__.py +2 -11
  10. endoreg_db/data/ai_model_meta/default_multilabel_classification.yaml +3 -3
  11. endoreg_db/data/event_classification/data.yaml +4 -0
  12. endoreg_db/data/event_classification_choice/data.yaml +9 -0
  13. endoreg_db/data/examination/examinations/data.yaml +114 -14
  14. endoreg_db/data/examination/time-type/data.yaml +0 -3
  15. endoreg_db/data/examination_indication/endoscopy.yaml +108 -173
  16. endoreg_db/data/examination_indication_classification/endoscopy.yaml +0 -70
  17. endoreg_db/data/examination_indication_classification_choice/endoscopy.yaml +33 -37
  18. endoreg_db/data/finding/00_generic.yaml +35 -0
  19. endoreg_db/data/finding/00_generic_complication.yaml +9 -0
  20. endoreg_db/data/finding/01_gastroscopy_baseline.yaml +88 -0
  21. endoreg_db/data/finding/01_gastroscopy_observation.yaml +113 -0
  22. endoreg_db/data/finding/02_colonoscopy_baseline.yaml +53 -0
  23. endoreg_db/data/finding/02_colonoscopy_hidden.yaml +119 -0
  24. endoreg_db/data/finding/02_colonoscopy_observation.yaml +152 -0
  25. endoreg_db/data/finding_classification/00_generic.yaml +44 -0
  26. endoreg_db/data/finding_classification/00_generic_histology.yaml +28 -0
  27. endoreg_db/data/finding_classification/00_generic_lesion.yaml +52 -0
  28. endoreg_db/data/finding_classification/02_colonoscopy_baseline.yaml +83 -0
  29. endoreg_db/data/finding_classification/02_colonoscopy_histology.yaml +13 -0
  30. endoreg_db/data/finding_classification/02_colonoscopy_other.yaml +12 -0
  31. endoreg_db/data/finding_classification/02_colonoscopy_polyp.yaml +101 -0
  32. endoreg_db/data/finding_classification_choice/{yes_no_na.yaml → 00_generic.yaml} +5 -1
  33. endoreg_db/data/finding_classification_choice/{examination_setting_generic_types.yaml → 00_generic_baseline.yaml} +10 -2
  34. endoreg_db/data/finding_classification_choice/{complication_generic_types.yaml → 00_generic_complication.yaml} +1 -1
  35. endoreg_db/data/finding_classification_choice/{histology.yaml → 00_generic_histology.yaml} +1 -4
  36. endoreg_db/data/finding_classification_choice/00_generic_lesion.yaml +158 -0
  37. endoreg_db/data/finding_classification_choice/{bowel_preparation.yaml → 02_colonoscopy_bowel_preparation.yaml} +1 -30
  38. endoreg_db/data/finding_classification_choice/{colonoscopy_not_complete_reason.yaml → 02_colonoscopy_generic.yaml} +1 -1
  39. endoreg_db/data/finding_classification_choice/{histology_polyp.yaml → 02_colonoscopy_histology.yaml} +1 -1
  40. endoreg_db/data/finding_classification_choice/{colonoscopy_location.yaml → 02_colonoscopy_location.yaml} +23 -4
  41. endoreg_db/data/finding_classification_choice/02_colonoscopy_other.yaml +34 -0
  42. endoreg_db/data/finding_classification_choice/02_colonoscopy_polyp_advanced_imaging.yaml +76 -0
  43. endoreg_db/data/finding_classification_choice/{colon_lesion_paris.yaml → 02_colonoscopy_polyp_morphology.yaml} +26 -8
  44. endoreg_db/data/finding_classification_choice/02_colonoscopy_size.yaml +27 -0
  45. endoreg_db/data/finding_classification_type/{colonoscopy_basic.yaml → 00_generic.yaml} +18 -13
  46. endoreg_db/data/finding_classification_type/02_colonoscopy.yaml +9 -0
  47. endoreg_db/data/finding_intervention/00_generic_endoscopy.yaml +59 -0
  48. endoreg_db/data/finding_intervention/00_generic_endoscopy_ablation.yaml +44 -0
  49. endoreg_db/data/finding_intervention/00_generic_endoscopy_bleeding.yaml +55 -0
  50. endoreg_db/data/finding_intervention/00_generic_endoscopy_resection.yaml +85 -0
  51. endoreg_db/data/finding_intervention/00_generic_endoscopy_stenosis.yaml +17 -0
  52. endoreg_db/data/finding_intervention/00_generic_endoscopy_stent.yaml +9 -0
  53. endoreg_db/data/finding_intervention/01_gastroscopy.yaml +19 -0
  54. endoreg_db/data/finding_intervention/04_eus.yaml +39 -0
  55. endoreg_db/data/finding_intervention/05_ercp.yaml +3 -0
  56. endoreg_db/data/finding_type/data.yaml +8 -12
  57. endoreg_db/data/requirement/01_patient_data.yaml +93 -0
  58. endoreg_db/data/requirement/old/colon_polyp_intervention.yaml +49 -0
  59. endoreg_db/data/requirement/old/coloreg_colon_polyp.yaml +49 -0
  60. endoreg_db/data/requirement_operator/new_operators.yaml +36 -0
  61. endoreg_db/data/requirement_set/01_endoscopy_generic.yaml +29 -12
  62. endoreg_db/data/requirement_set/01_laboratory.yaml +13 -0
  63. endoreg_db/data/requirement_set/{endoscopy_bleeding_risk.yaml → 02_endoscopy_bleeding_risk.yaml} +0 -6
  64. endoreg_db/data/requirement_set/90_coloreg.yaml +190 -0
  65. endoreg_db/data/requirement_set/_old_ +109 -0
  66. endoreg_db/data/requirement_set_type/data.yaml +21 -0
  67. endoreg_db/data/setup_config.yaml +4 -4
  68. endoreg_db/data/tag/requirement_set_tags.yaml +21 -0
  69. endoreg_db/exceptions.py +4 -2
  70. endoreg_db/forms/examination_form.py +1 -1
  71. endoreg_db/helpers/data_loader.py +125 -53
  72. endoreg_db/helpers/default_objects.py +116 -81
  73. endoreg_db/import_files/__init__.py +27 -0
  74. endoreg_db/import_files/context/__init__.py +7 -0
  75. endoreg_db/import_files/context/default_sensitive_meta.py +81 -0
  76. endoreg_db/import_files/context/ensure_center.py +17 -0
  77. endoreg_db/import_files/context/file_lock.py +66 -0
  78. endoreg_db/import_files/context/import_context.py +43 -0
  79. endoreg_db/import_files/context/validate_directories.py +56 -0
  80. endoreg_db/import_files/file_storage/__init__.py +15 -0
  81. endoreg_db/import_files/file_storage/create_report_file.py +76 -0
  82. endoreg_db/import_files/file_storage/create_video_file.py +75 -0
  83. endoreg_db/import_files/file_storage/sensitive_meta_storage.py +39 -0
  84. endoreg_db/import_files/file_storage/state_management.py +400 -0
  85. endoreg_db/import_files/file_storage/storage.py +36 -0
  86. endoreg_db/import_files/import_service.md +26 -0
  87. endoreg_db/import_files/processing/__init__.py +11 -0
  88. endoreg_db/import_files/processing/report_processing/report_anonymization.py +94 -0
  89. endoreg_db/import_files/processing/sensitive_meta_adapter.py +51 -0
  90. endoreg_db/import_files/processing/video_processing/video_anonymization.py +107 -0
  91. endoreg_db/import_files/processing/video_processing/video_cleanup_on_error.py +119 -0
  92. endoreg_db/import_files/pseudonymization/fake.py +52 -0
  93. endoreg_db/import_files/pseudonymization/k_anonymity.py +182 -0
  94. endoreg_db/import_files/pseudonymization/k_pseudonymity.py +128 -0
  95. endoreg_db/import_files/report_import_service.py +141 -0
  96. endoreg_db/import_files/video_import_service.py +150 -0
  97. endoreg_db/management/commands/create_model_meta_from_huggingface.py +21 -10
  98. endoreg_db/management/commands/create_multilabel_model_meta.py +299 -129
  99. endoreg_db/management/commands/import_report.py +130 -65
  100. endoreg_db/management/commands/import_video.py +9 -10
  101. endoreg_db/management/commands/import_video_with_classification.py +2 -2
  102. endoreg_db/management/commands/list_routes.py +18 -0
  103. endoreg_db/management/commands/load_ai_model_data.py +5 -5
  104. endoreg_db/management/commands/load_ai_model_label_data.py +9 -7
  105. endoreg_db/management/commands/load_base_db_data.py +5 -134
  106. endoreg_db/management/commands/load_center_data.py +12 -12
  107. endoreg_db/management/commands/load_contraindication_data.py +14 -16
  108. endoreg_db/management/commands/load_disease_classification_choices_data.py +15 -18
  109. endoreg_db/management/commands/load_disease_classification_data.py +15 -18
  110. endoreg_db/management/commands/load_disease_data.py +25 -28
  111. endoreg_db/management/commands/load_endoscope_data.py +20 -27
  112. endoreg_db/management/commands/load_event_data.py +14 -16
  113. endoreg_db/management/commands/load_examination_data.py +31 -44
  114. endoreg_db/management/commands/load_examination_indication_data.py +20 -21
  115. endoreg_db/management/commands/load_finding_data.py +52 -80
  116. endoreg_db/management/commands/load_information_source.py +21 -23
  117. endoreg_db/management/commands/load_lab_value_data.py +17 -26
  118. endoreg_db/management/commands/load_medication_data.py +13 -12
  119. endoreg_db/management/commands/load_organ_data.py +15 -19
  120. endoreg_db/management/commands/load_pdf_type_data.py +19 -18
  121. endoreg_db/management/commands/load_profession_data.py +14 -17
  122. endoreg_db/management/commands/load_qualification_data.py +20 -23
  123. endoreg_db/management/commands/load_report_reader_flag_data.py +17 -19
  124. endoreg_db/management/commands/load_requirement_data.py +62 -39
  125. endoreg_db/management/commands/load_requirement_set_tags.py +95 -0
  126. endoreg_db/management/commands/load_risk_data.py +7 -6
  127. endoreg_db/management/commands/load_shift_data.py +20 -23
  128. endoreg_db/management/commands/load_tag_data.py +8 -11
  129. endoreg_db/management/commands/load_unit_data.py +17 -19
  130. endoreg_db/management/commands/setup_endoreg_db.py +3 -3
  131. endoreg_db/management/commands/start_filewatcher.py +46 -37
  132. endoreg_db/management/commands/storage_management.py +271 -203
  133. endoreg_db/management/commands/validate_video_files.py +1 -5
  134. endoreg_db/migrations/0001_initial.py +297 -250
  135. endoreg_db/models/__init__.py +78 -123
  136. endoreg_db/models/administration/__init__.py +21 -42
  137. endoreg_db/models/administration/ai/active_model.py +2 -2
  138. endoreg_db/models/administration/ai/ai_model.py +7 -6
  139. endoreg_db/models/administration/case/__init__.py +1 -15
  140. endoreg_db/models/administration/case/case.py +3 -3
  141. endoreg_db/models/administration/case/case_template/__init__.py +2 -14
  142. endoreg_db/models/administration/case/case_template/case_template.py +2 -124
  143. endoreg_db/models/administration/case/case_template/case_template_rule.py +2 -268
  144. endoreg_db/models/administration/case/case_template/case_template_rule_value.py +2 -85
  145. endoreg_db/models/administration/case/case_template/case_template_type.py +2 -25
  146. endoreg_db/models/administration/center/center.py +33 -19
  147. endoreg_db/models/administration/center/center_product.py +12 -9
  148. endoreg_db/models/administration/center/center_resource.py +25 -19
  149. endoreg_db/models/administration/center/center_shift.py +21 -17
  150. endoreg_db/models/administration/center/center_waste.py +16 -8
  151. endoreg_db/models/administration/person/__init__.py +2 -0
  152. endoreg_db/models/administration/person/employee/employee.py +10 -5
  153. endoreg_db/models/administration/person/employee/employee_qualification.py +9 -4
  154. endoreg_db/models/administration/person/employee/employee_type.py +12 -6
  155. endoreg_db/models/administration/person/examiner/examiner.py +13 -11
  156. endoreg_db/models/administration/person/patient/__init__.py +2 -0
  157. endoreg_db/models/administration/person/patient/patient.py +129 -100
  158. endoreg_db/models/administration/person/patient/patient_external_id.py +37 -0
  159. endoreg_db/models/administration/person/person.py +4 -0
  160. endoreg_db/models/administration/person/profession/__init__.py +8 -4
  161. endoreg_db/models/administration/person/user/portal_user_information.py +11 -7
  162. endoreg_db/models/administration/product/product.py +20 -15
  163. endoreg_db/models/administration/product/product_material.py +17 -18
  164. endoreg_db/models/administration/product/product_weight.py +12 -8
  165. endoreg_db/models/administration/product/reference_product.py +23 -55
  166. endoreg_db/models/administration/qualification/qualification.py +7 -3
  167. endoreg_db/models/administration/qualification/qualification_type.py +7 -3
  168. endoreg_db/models/administration/shift/scheduled_days.py +8 -5
  169. endoreg_db/models/administration/shift/shift.py +16 -12
  170. endoreg_db/models/administration/shift/shift_type.py +23 -31
  171. endoreg_db/models/label/__init__.py +8 -9
  172. endoreg_db/models/label/annotation/image_classification.py +10 -9
  173. endoreg_db/models/label/annotation/video_segmentation_annotation.py +23 -28
  174. endoreg_db/models/label/label.py +15 -15
  175. endoreg_db/models/label/label_set.py +19 -6
  176. endoreg_db/models/label/label_type.py +1 -1
  177. endoreg_db/models/label/label_video_segment/_create_from_video.py +5 -8
  178. endoreg_db/models/label/label_video_segment/label_video_segment.py +98 -102
  179. endoreg_db/models/label/video_segmentation_label.py +4 -0
  180. endoreg_db/models/label/video_segmentation_labelset.py +4 -3
  181. endoreg_db/models/media/frame/frame.py +22 -22
  182. endoreg_db/models/media/pdf/raw_pdf.py +194 -194
  183. endoreg_db/models/media/pdf/report_file.py +25 -29
  184. endoreg_db/models/media/pdf/report_reader/report_reader_config.py +55 -47
  185. endoreg_db/models/media/pdf/report_reader/report_reader_flag.py +23 -7
  186. endoreg_db/models/media/processing_history/__init__.py +5 -0
  187. endoreg_db/models/media/processing_history/processing_history.py +96 -0
  188. endoreg_db/models/media/video/__init__.py +1 -0
  189. endoreg_db/models/media/video/create_from_file.py +139 -77
  190. endoreg_db/models/media/video/pipe_2.py +8 -9
  191. endoreg_db/models/media/video/video_file.py +174 -112
  192. endoreg_db/models/media/video/video_file_ai.py +288 -74
  193. endoreg_db/models/media/video/video_file_anonymize.py +38 -38
  194. endoreg_db/models/media/video/video_file_frames/__init__.py +3 -1
  195. endoreg_db/models/media/video/video_file_frames/_bulk_create_frames.py +6 -8
  196. endoreg_db/models/media/video/video_file_frames/_create_frame_object.py +7 -9
  197. endoreg_db/models/media/video/video_file_frames/_delete_frames.py +9 -8
  198. endoreg_db/models/media/video/video_file_frames/_extract_frames.py +38 -45
  199. endoreg_db/models/media/video/video_file_frames/_get_frame.py +6 -8
  200. endoreg_db/models/media/video/video_file_frames/_get_frame_number.py +4 -18
  201. endoreg_db/models/media/video/video_file_frames/_get_frame_path.py +4 -3
  202. endoreg_db/models/media/video/video_file_frames/_get_frame_paths.py +7 -6
  203. endoreg_db/models/media/video/video_file_frames/_get_frame_range.py +6 -8
  204. endoreg_db/models/media/video/video_file_frames/_get_frames.py +6 -8
  205. endoreg_db/models/media/video/video_file_frames/_initialize_frames.py +15 -25
  206. endoreg_db/models/media/video/video_file_frames/_manage_frame_range.py +26 -23
  207. endoreg_db/models/media/video/video_file_frames/_mark_frames_extracted_status.py +23 -14
  208. endoreg_db/models/media/video/video_file_io.py +113 -61
  209. endoreg_db/models/media/video/video_file_meta/get_crop_template.py +3 -3
  210. endoreg_db/models/media/video/video_file_meta/get_endo_roi.py +5 -3
  211. endoreg_db/models/media/video/video_file_meta/get_fps.py +37 -34
  212. endoreg_db/models/media/video/video_file_meta/initialize_video_specs.py +19 -25
  213. endoreg_db/models/media/video/video_file_meta/text_meta.py +41 -38
  214. endoreg_db/models/media/video/video_file_meta/video_meta.py +14 -7
  215. endoreg_db/models/media/video/video_file_segments.py +24 -17
  216. endoreg_db/models/media/video/video_metadata.py +19 -35
  217. endoreg_db/models/media/video/video_processing.py +96 -95
  218. endoreg_db/models/medical/contraindication/README.md +1 -0
  219. endoreg_db/models/medical/contraindication/__init__.py +13 -3
  220. endoreg_db/models/medical/disease.py +22 -16
  221. endoreg_db/models/medical/event.py +31 -18
  222. endoreg_db/models/medical/examination/__init__.py +13 -6
  223. endoreg_db/models/medical/examination/examination.py +39 -20
  224. endoreg_db/models/medical/examination/examination_indication.py +30 -95
  225. endoreg_db/models/medical/examination/examination_time.py +23 -8
  226. endoreg_db/models/medical/examination/examination_time_type.py +9 -6
  227. endoreg_db/models/medical/examination/examination_type.py +3 -4
  228. endoreg_db/models/medical/finding/finding.py +32 -40
  229. endoreg_db/models/medical/finding/finding_classification.py +42 -72
  230. endoreg_db/models/medical/finding/finding_intervention.py +25 -22
  231. endoreg_db/models/medical/finding/finding_type.py +13 -12
  232. endoreg_db/models/medical/hardware/endoscope.py +26 -26
  233. endoreg_db/models/medical/hardware/endoscopy_processor.py +2 -2
  234. endoreg_db/models/medical/laboratory/lab_value.py +62 -91
  235. endoreg_db/models/medical/medication/medication.py +22 -10
  236. endoreg_db/models/medical/medication/medication_indication.py +29 -3
  237. endoreg_db/models/medical/medication/medication_indication_type.py +25 -14
  238. endoreg_db/models/medical/medication/medication_intake_time.py +31 -19
  239. endoreg_db/models/medical/medication/medication_schedule.py +27 -16
  240. endoreg_db/models/medical/organ/__init__.py +15 -12
  241. endoreg_db/models/medical/patient/medication_examples.py +6 -6
  242. endoreg_db/models/medical/patient/patient_disease.py +20 -23
  243. endoreg_db/models/medical/patient/patient_event.py +19 -22
  244. endoreg_db/models/medical/patient/patient_examination.py +48 -54
  245. endoreg_db/models/medical/patient/patient_examination_indication.py +16 -14
  246. endoreg_db/models/medical/patient/patient_finding.py +122 -139
  247. endoreg_db/models/medical/patient/patient_finding_classification.py +44 -49
  248. endoreg_db/models/medical/patient/patient_finding_intervention.py +8 -19
  249. endoreg_db/models/medical/patient/patient_lab_sample.py +28 -23
  250. endoreg_db/models/medical/patient/patient_lab_value.py +82 -89
  251. endoreg_db/models/medical/patient/patient_medication.py +27 -38
  252. endoreg_db/models/medical/patient/patient_medication_schedule.py +28 -36
  253. endoreg_db/models/medical/risk/risk.py +7 -6
  254. endoreg_db/models/medical/risk/risk_type.py +8 -5
  255. endoreg_db/models/metadata/model_meta.py +60 -29
  256. endoreg_db/models/metadata/model_meta_logic.py +125 -18
  257. endoreg_db/models/metadata/pdf_meta.py +31 -24
  258. endoreg_db/models/metadata/sensitive_meta.py +105 -85
  259. endoreg_db/models/metadata/sensitive_meta_logic.py +198 -103
  260. endoreg_db/models/metadata/video_meta.py +51 -31
  261. endoreg_db/models/metadata/video_prediction_logic.py +16 -23
  262. endoreg_db/models/metadata/video_prediction_meta.py +29 -33
  263. endoreg_db/models/other/distribution/date_value_distribution.py +89 -29
  264. endoreg_db/models/other/distribution/multiple_categorical_value_distribution.py +21 -5
  265. endoreg_db/models/other/distribution/numeric_value_distribution.py +114 -53
  266. endoreg_db/models/other/distribution/single_categorical_value_distribution.py +4 -3
  267. endoreg_db/models/other/emission/emission_factor.py +18 -8
  268. endoreg_db/models/other/gender.py +10 -5
  269. endoreg_db/models/other/information_source.py +50 -29
  270. endoreg_db/models/other/material.py +9 -5
  271. endoreg_db/models/other/resource.py +6 -4
  272. endoreg_db/models/other/tag.py +10 -5
  273. endoreg_db/models/other/transport_route.py +13 -8
  274. endoreg_db/models/other/unit.py +10 -6
  275. endoreg_db/models/other/waste.py +6 -5
  276. endoreg_db/models/report/report.py +6 -0
  277. endoreg_db/models/requirement/requirement.py +329 -361
  278. endoreg_db/models/requirement/requirement_error.py +85 -0
  279. endoreg_db/models/requirement/requirement_evaluation/evaluate_with_dependencies.py +268 -0
  280. endoreg_db/models/requirement/requirement_evaluation/operator_evaluation_models.py +3 -6
  281. endoreg_db/models/requirement/requirement_evaluation/requirement_type_parser.py +90 -64
  282. endoreg_db/models/requirement/requirement_operator.py +103 -112
  283. endoreg_db/models/requirement/requirement_set.py +74 -57
  284. endoreg_db/models/state/__init__.py +4 -4
  285. endoreg_db/models/state/abstract.py +2 -2
  286. endoreg_db/models/state/anonymization.py +12 -0
  287. endoreg_db/models/state/audit_ledger.py +49 -51
  288. endoreg_db/models/state/label_video_segment.py +9 -0
  289. endoreg_db/models/state/raw_pdf.py +101 -68
  290. endoreg_db/models/state/sensitive_meta.py +6 -2
  291. endoreg_db/models/state/video.py +110 -90
  292. endoreg_db/models/upload_job.py +35 -34
  293. endoreg_db/models/utils.py +28 -25
  294. endoreg_db/queries/__init__.py +3 -1
  295. endoreg_db/root_urls.py +21 -2
  296. endoreg_db/schemas/examination_evaluation.py +1 -1
  297. endoreg_db/serializers/__init__.py +2 -10
  298. endoreg_db/serializers/anonymization.py +18 -10
  299. endoreg_db/serializers/label_video_segment/label_video_segment.py +2 -29
  300. endoreg_db/serializers/meta/__init__.py +1 -6
  301. endoreg_db/serializers/meta/sensitive_meta_detail.py +63 -118
  302. endoreg_db/serializers/misc/file_overview.py +11 -99
  303. endoreg_db/serializers/misc/sensitive_patient_data.py +50 -26
  304. endoreg_db/serializers/patient_examination/patient_examination.py +3 -3
  305. endoreg_db/serializers/pdf/anony_text_validation.py +39 -23
  306. endoreg_db/serializers/requirements/requirement_sets.py +92 -22
  307. endoreg_db/serializers/video/segmentation.py +2 -1
  308. endoreg_db/serializers/video/video_file_list.py +65 -34
  309. endoreg_db/serializers/video/video_processing_history.py +20 -5
  310. endoreg_db/services/__old/pdf_import.py +1487 -0
  311. endoreg_db/services/__old/video_import.py +1306 -0
  312. endoreg_db/services/anonymization.py +128 -89
  313. endoreg_db/services/lookup_service.py +65 -52
  314. endoreg_db/services/lookup_store.py +2 -2
  315. endoreg_db/services/pdf_import.py +0 -1382
  316. endoreg_db/services/report_import.py +10 -0
  317. endoreg_db/services/video_import.py +6 -1255
  318. endoreg_db/tasks/upload_tasks.py +79 -70
  319. endoreg_db/tasks/video_ingest.py +8 -4
  320. endoreg_db/urls/__init__.py +5 -32
  321. endoreg_db/urls/ai.py +32 -0
  322. endoreg_db/urls/media.py +121 -83
  323. endoreg_db/urls/root_urls.py +29 -0
  324. endoreg_db/utils/__init__.py +15 -5
  325. endoreg_db/utils/ai/multilabel_classification_net.py +116 -20
  326. endoreg_db/utils/case_generator/__init__.py +3 -0
  327. endoreg_db/utils/dataloader.py +142 -40
  328. endoreg_db/utils/defaults/set_default_center.py +32 -0
  329. endoreg_db/utils/names.py +22 -16
  330. endoreg_db/utils/paths.py +110 -46
  331. endoreg_db/utils/permissions.py +2 -1
  332. endoreg_db/utils/pipelines/Readme.md +1 -1
  333. endoreg_db/utils/pipelines/process_video_dir.py +1 -1
  334. endoreg_db/utils/requirement_operator_logic/_old/model_evaluators.py +655 -0
  335. endoreg_db/utils/requirement_operator_logic/new_operator_logic.py +97 -0
  336. endoreg_db/utils/setup_config.py +8 -5
  337. endoreg_db/utils/storage.py +115 -0
  338. endoreg_db/utils/validate_endo_roi.py +8 -2
  339. endoreg_db/utils/video/ffmpeg_wrapper.py +184 -188
  340. endoreg_db/views/__init__.py +85 -183
  341. endoreg_db/views/ai/__init__.py +8 -0
  342. endoreg_db/views/ai/label.py +155 -0
  343. endoreg_db/views/anonymization/media_management.py +202 -166
  344. endoreg_db/views/anonymization/overview.py +99 -67
  345. endoreg_db/views/anonymization/validate.py +182 -44
  346. endoreg_db/views/media/__init__.py +7 -20
  347. endoreg_db/views/media/pdf_media.py +197 -174
  348. endoreg_db/views/media/sensitive_metadata.py +193 -138
  349. endoreg_db/views/media/video_media.py +89 -82
  350. endoreg_db/views/meta/__init__.py +0 -8
  351. endoreg_db/views/misc/__init__.py +1 -7
  352. endoreg_db/views/misc/upload_views.py +94 -93
  353. endoreg_db/views/patient/patient.py +5 -4
  354. endoreg_db/views/report/__init__.py +5 -7
  355. endoreg_db/views/{pdf → report}/reimport.py +22 -22
  356. endoreg_db/views/{pdf/pdf_stream.py → report/report_stream.py} +46 -39
  357. endoreg_db/views/requirement/evaluate.py +188 -187
  358. endoreg_db/views/requirement/lookup.py +17 -3
  359. endoreg_db/views/requirement/lookup_store.py +22 -90
  360. endoreg_db/views/requirement/requirement_utils.py +89 -0
  361. endoreg_db/views/video/__init__.py +23 -24
  362. endoreg_db/views/video/correction.py +201 -172
  363. endoreg_db/views/video/reimport.py +1 -1
  364. endoreg_db/views/{media/video_segments.py → video/segments_crud.py} +77 -40
  365. endoreg_db/views/video/{video_meta.py → video_meta_stats.py} +2 -2
  366. endoreg_db/views/video/video_stream.py +7 -8
  367. {endoreg_db-0.8.6.1.dist-info → endoreg_db-0.8.8.9.dist-info}/METADATA +7 -3
  368. {endoreg_db-0.8.6.1.dist-info → endoreg_db-0.8.8.9.dist-info}/RECORD +391 -413
  369. {endoreg_db-0.8.6.1.dist-info → endoreg_db-0.8.8.9.dist-info}/WHEEL +1 -1
  370. endoreg_db/data/finding/anatomy_colon.yaml +0 -128
  371. endoreg_db/data/finding/colonoscopy.yaml +0 -40
  372. endoreg_db/data/finding/colonoscopy_bowel_prep.yaml +0 -56
  373. endoreg_db/data/finding/complication.yaml +0 -16
  374. endoreg_db/data/finding/data.yaml +0 -105
  375. endoreg_db/data/finding/examination_setting.yaml +0 -16
  376. endoreg_db/data/finding/medication_related.yaml +0 -18
  377. endoreg_db/data/finding/outcome.yaml +0 -12
  378. endoreg_db/data/finding_classification/colonoscopy_bowel_preparation.yaml +0 -95
  379. endoreg_db/data/finding_classification/colonoscopy_jnet.yaml +0 -22
  380. endoreg_db/data/finding_classification/colonoscopy_kudo.yaml +0 -25
  381. endoreg_db/data/finding_classification/colonoscopy_lesion_circularity.yaml +0 -20
  382. endoreg_db/data/finding_classification/colonoscopy_lesion_planarity.yaml +0 -24
  383. endoreg_db/data/finding_classification/colonoscopy_lesion_size.yaml +0 -68
  384. endoreg_db/data/finding_classification/colonoscopy_lesion_surface.yaml +0 -20
  385. endoreg_db/data/finding_classification/colonoscopy_location.yaml +0 -80
  386. endoreg_db/data/finding_classification/colonoscopy_lst.yaml +0 -21
  387. endoreg_db/data/finding_classification/colonoscopy_nice.yaml +0 -20
  388. endoreg_db/data/finding_classification/colonoscopy_paris.yaml +0 -26
  389. endoreg_db/data/finding_classification/colonoscopy_sano.yaml +0 -22
  390. endoreg_db/data/finding_classification/colonoscopy_summary.yaml +0 -53
  391. endoreg_db/data/finding_classification/complication_generic.yaml +0 -25
  392. endoreg_db/data/finding_classification/examination_setting_generic.yaml +0 -40
  393. endoreg_db/data/finding_classification/histology_colo.yaml +0 -51
  394. endoreg_db/data/finding_classification/intervention_required.yaml +0 -26
  395. endoreg_db/data/finding_classification/medication_related.yaml +0 -23
  396. endoreg_db/data/finding_classification/visualized.yaml +0 -33
  397. endoreg_db/data/finding_classification_choice/colon_lesion_circularity_default.yaml +0 -32
  398. endoreg_db/data/finding_classification_choice/colon_lesion_jnet.yaml +0 -15
  399. endoreg_db/data/finding_classification_choice/colon_lesion_kudo.yaml +0 -23
  400. endoreg_db/data/finding_classification_choice/colon_lesion_lst.yaml +0 -15
  401. endoreg_db/data/finding_classification_choice/colon_lesion_nice.yaml +0 -17
  402. endoreg_db/data/finding_classification_choice/colon_lesion_planarity_default.yaml +0 -49
  403. endoreg_db/data/finding_classification_choice/colon_lesion_sano.yaml +0 -14
  404. endoreg_db/data/finding_classification_choice/colon_lesion_surface_intact_default.yaml +0 -36
  405. endoreg_db/data/finding_classification_choice/colonoscopy_size.yaml +0 -82
  406. endoreg_db/data/finding_classification_choice/colonoscopy_summary_worst_finding.yaml +0 -15
  407. endoreg_db/data/finding_classification_choice/outcome.yaml +0 -19
  408. endoreg_db/data/finding_intervention/endoscopy.yaml +0 -43
  409. endoreg_db/data/finding_intervention/endoscopy_colonoscopy.yaml +0 -168
  410. endoreg_db/data/finding_intervention/endoscopy_egd.yaml +0 -128
  411. endoreg_db/data/finding_intervention/endoscopy_ercp.yaml +0 -32
  412. endoreg_db/data/finding_intervention/endoscopy_eus_lower.yaml +0 -9
  413. endoreg_db/data/finding_intervention/endoscopy_eus_upper.yaml +0 -36
  414. endoreg_db/data/finding_morphology_classification_type/colonoscopy.yaml +0 -79
  415. endoreg_db/data/requirement/age.yaml +0 -26
  416. endoreg_db/data/requirement/gender.yaml +0 -25
  417. endoreg_db/management/commands/init_default_ai_model.py +0 -112
  418. endoreg_db/management/commands/reset_celery_schedule.py +0 -9
  419. endoreg_db/management/commands/validate_video.py +0 -204
  420. endoreg_db/migrations/0002_add_video_correction_models.py +0 -52
  421. endoreg_db/migrations/0003_add_center_display_name.py +0 -30
  422. endoreg_db/models/administration/permissions/__init__.py +0 -44
  423. endoreg_db/models/rule/__init__.py +0 -13
  424. endoreg_db/models/rule/rule.py +0 -27
  425. endoreg_db/models/rule/rule_applicator.py +0 -224
  426. endoreg_db/models/rule/rule_attribute_dtype.py +0 -17
  427. endoreg_db/models/rule/rule_type.py +0 -20
  428. endoreg_db/models/rule/ruleset.py +0 -17
  429. endoreg_db/renames.yml +0 -8
  430. endoreg_db/serializers/_old/raw_pdf_meta_validation.py +0 -223
  431. endoreg_db/serializers/_old/raw_video_meta_validation.py +0 -179
  432. endoreg_db/serializers/_old/video.py +0 -71
  433. endoreg_db/serializers/meta/pdf_file_meta_extraction.py +0 -115
  434. endoreg_db/serializers/meta/report_meta.py +0 -53
  435. endoreg_db/serializers/report/__init__.py +0 -9
  436. endoreg_db/serializers/report/mixins.py +0 -45
  437. endoreg_db/serializers/report/report.py +0 -105
  438. endoreg_db/serializers/report/report_list.py +0 -22
  439. endoreg_db/serializers/report/secure_file_url.py +0 -26
  440. endoreg_db/serializers/video/video_metadata.py +0 -105
  441. endoreg_db/services/requirements_object.py +0 -147
  442. endoreg_db/services/storage_aware_video_processor.py +0 -344
  443. endoreg_db/urls/files.py +0 -6
  444. endoreg_db/urls/label_video_segment_validate.py +0 -33
  445. endoreg_db/urls/label_video_segments.py +0 -46
  446. endoreg_db/urls/report.py +0 -48
  447. endoreg_db/urls/video.py +0 -61
  448. endoreg_db/utils/case_generator/case_generator.py +0 -159
  449. endoreg_db/utils/case_generator/utils.py +0 -30
  450. endoreg_db/utils/requirement_operator_logic/model_evaluators.py +0 -368
  451. endoreg_db/views/label/__init__.py +0 -5
  452. endoreg_db/views/label/label.py +0 -15
  453. endoreg_db/views/label_video_segment/__init__.py +0 -16
  454. endoreg_db/views/label_video_segment/create_lvs_from_annotation.py +0 -44
  455. endoreg_db/views/label_video_segment/get_lvs_by_name_and_video.py +0 -50
  456. endoreg_db/views/label_video_segment/label_video_segment.py +0 -77
  457. endoreg_db/views/label_video_segment/label_video_segment_by_label.py +0 -174
  458. endoreg_db/views/label_video_segment/label_video_segment_detail.py +0 -73
  459. endoreg_db/views/label_video_segment/update_lvs_from_annotation.py +0 -46
  460. endoreg_db/views/label_video_segment/validate.py +0 -226
  461. endoreg_db/views/media/segments.py +0 -71
  462. endoreg_db/views/meta/available_files_list.py +0 -146
  463. endoreg_db/views/meta/report_meta.py +0 -53
  464. endoreg_db/views/meta/sensitive_meta_detail.py +0 -148
  465. endoreg_db/views/misc/secure_file_serving_view.py +0 -80
  466. endoreg_db/views/misc/secure_file_url_view.py +0 -84
  467. endoreg_db/views/misc/secure_url_validate.py +0 -79
  468. endoreg_db/views/patient_examination/DEPRECATED_video_backup.py +0 -164
  469. endoreg_db/views/patient_finding_location/__init__.py +0 -5
  470. endoreg_db/views/patient_finding_location/pfl_create.py +0 -70
  471. endoreg_db/views/patient_finding_morphology/__init__.py +0 -5
  472. endoreg_db/views/patient_finding_morphology/pfm_create.py +0 -70
  473. endoreg_db/views/pdf/__init__.py +0 -8
  474. endoreg_db/views/report/report_list.py +0 -112
  475. endoreg_db/views/report/report_with_secure_url.py +0 -28
  476. endoreg_db/views/report/start_examination.py +0 -7
  477. endoreg_db/views/video/segmentation.py +0 -274
  478. endoreg_db/views/video/task_status.py +0 -49
  479. endoreg_db/views/video/timeline.py +0 -46
  480. endoreg_db/views/video/video_analyze.py +0 -52
  481. endoreg_db/views.py +0 -0
  482. /endoreg_db/data/requirement/{colonoscopy_baseline_austria.yaml → old/colonoscopy_baseline_austria.yaml} +0 -0
  483. /endoreg_db/data/requirement/{disease_cardiovascular.yaml → old/disease_cardiovascular.yaml} +0 -0
  484. /endoreg_db/data/requirement/{disease_classification_choice_cardiovascular.yaml → old/disease_classification_choice_cardiovascular.yaml} +0 -0
  485. /endoreg_db/data/requirement/{disease_hepatology.yaml → old/disease_hepatology.yaml} +0 -0
  486. /endoreg_db/data/requirement/{disease_misc.yaml → old/disease_misc.yaml} +0 -0
  487. /endoreg_db/data/requirement/{disease_renal.yaml → old/disease_renal.yaml} +0 -0
  488. /endoreg_db/data/requirement/{endoscopy_bleeding_risk.yaml → old/endoscopy_bleeding_risk.yaml} +0 -0
  489. /endoreg_db/data/requirement/{event_cardiology.yaml → old/event_cardiology.yaml} +0 -0
  490. /endoreg_db/data/requirement/{event_requirements.yaml → old/event_requirements.yaml} +0 -0
  491. /endoreg_db/data/requirement/{finding_colon_polyp.yaml → old/finding_colon_polyp.yaml} +0 -0
  492. /endoreg_db/{migrations/__init__.py → data/requirement/old/gender.yaml} +0 -0
  493. /endoreg_db/data/requirement/{lab_value.yaml → old/lab_value.yaml} +0 -0
  494. /endoreg_db/data/requirement/{medication.yaml → old/medication.yaml} +0 -0
  495. /endoreg_db/data/requirement_operator/{age.yaml → _old/age.yaml} +0 -0
  496. /endoreg_db/data/requirement_operator/{lab_operators.yaml → _old/lab_operators.yaml} +0 -0
  497. /endoreg_db/data/requirement_operator/{model_operators.yaml → _old/model_operators.yaml} +0 -0
  498. /endoreg_db/{models/media/video/refactor_plan.md → import_files/pseudonymization/__init__.py} +0 -0
  499. /endoreg_db/{models/media/video/video_file_frames.py → import_files/pseudonymization/pseudonymize.py} +0 -0
  500. /endoreg_db/models/{metadata/frame_ocr_result.py → report/__init__.py} +0 -0
  501. /endoreg_db/{urls/sensitive_meta.py → models/report/images.py} +0 -0
  502. /endoreg_db/utils/requirement_operator_logic/{lab_value_operators.py → _old/lab_value_operators.py} +0 -0
  503. {endoreg_db-0.8.6.1.dist-info → endoreg_db-0.8.8.9.dist-info}/licenses/LICENSE +0 -0
@@ -1,9 +1,9 @@
1
- # Generated by Django 5.2.5 on 2025-09-15 11:52
1
+ # Generated by Django 5.2.7 on 2025-11-26 11:26
2
2
 
3
3
  import django.core.validators
4
4
  import django.db.models.deletion
5
- import pathlib
6
5
  import uuid
6
+ from decimal import Decimal
7
7
  from django.conf import settings
8
8
  from django.db import migrations, models
9
9
 
@@ -26,47 +26,12 @@ class Migration(migrations.Migration):
26
26
  ('model_subtype', models.CharField(blank=True, max_length=255, null=True)),
27
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  ],
28
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  ),
29
- migrations.CreateModel(
30
- name='CaseTemplateRuleType',
31
- fields=[
32
- ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
33
- ('name', models.CharField(max_length=255)),
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- ('description', models.TextField(blank=True, null=True)),
35
- ],
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- ),
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- migrations.CreateModel(
38
- name='CaseTemplateRuleValue',
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- fields=[
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- ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
41
- ('name', models.CharField(max_length=255)),
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- ('description', models.TextField(blank=True, null=True)),
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- ('fk_value', models.CharField(blank=True, max_length=255, null=True)),
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- ('numeric_value', models.FloatField(blank=True, null=True)),
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- ('text_value', models.CharField(blank=True, max_length=255, null=True)),
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- ],
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- ),
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- migrations.CreateModel(
49
- name='CaseTemplateRuleValueType',
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- fields=[
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- ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
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- ('name', models.CharField(max_length=255)),
53
- ('description', models.TextField(blank=True, null=True)),
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- ('distribution_type', models.CharField(choices=[('single_categorical', 'single_categorical'), ('multiple_categorical', 'multiple_categorical'), ('numeric', 'numeric')], max_length=255)),
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- ],
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- ),
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- migrations.CreateModel(
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- name='CaseTemplateType',
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- fields=[
60
- ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
61
- ('name', models.CharField(max_length=255)),
62
- ('description', models.TextField(blank=True, null=True)),
63
- ],
64
- ),
65
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  migrations.CreateModel(
66
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  name='Center',
67
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  fields=[
68
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  ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
69
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  ('name', models.CharField(max_length=255)),
34
+ ('display_name', models.CharField(blank=True, default='', max_length=255)),
70
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  ],
71
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  ),
72
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  migrations.CreateModel(
@@ -149,26 +114,47 @@ class Migration(migrations.Migration):
149
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  },
150
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  ),
151
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  migrations.CreateModel(
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- name='EventClassification',
117
+ name='Event',
118
+ fields=[
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+ ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
120
+ ('name', models.CharField(max_length=100, unique=True)),
121
+ ('description', models.TextField(blank=True, null=True)),
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+ ],
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+ ),
124
+ migrations.CreateModel(
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+ name='ExaminationIndication',
153
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  fields=[
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  ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
155
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  ('name', models.CharField(max_length=255, unique=True)),
129
+ ('description', models.TextField(blank=True, null=True)),
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  ],
157
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  ),
158
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  migrations.CreateModel(
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- name='Examination',
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+ name='ExaminationIndicationClassification',
160
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  fields=[
161
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  ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
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- ('name', models.CharField(max_length=100, unique=True)),
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- ('name_de', models.CharField(max_length=100, null=True, unique=True)),
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- ('name_en', models.CharField(max_length=100, null=True, unique=True)),
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+ ('name', models.CharField(max_length=255, unique=True)),
165
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  ('description', models.TextField(blank=True, null=True)),
166
- ('description_de', models.TextField(blank=True, null=True)),
167
- ('description_en', models.TextField(blank=True, null=True)),
138
+ ],
139
+ ),
140
+ migrations.CreateModel(
141
+ name='ExaminationIndicationClassificationChoice',
142
+ fields=[
143
+ ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
144
+ ('name', models.CharField(max_length=255, unique=True)),
145
+ ('subcategories', models.JSONField(default=dict)),
146
+ ('numerical_descriptors', models.JSONField(default=dict)),
147
+ ],
148
+ ),
149
+ migrations.CreateModel(
150
+ name='ExaminationTime',
151
+ fields=[
152
+ ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
153
+ ('name', models.CharField(max_length=100, unique=True)),
168
154
  ],
169
155
  options={
170
- 'verbose_name': 'Examination',
171
- 'verbose_name_plural': 'Examinations',
156
+ 'verbose_name': 'Examination Time',
157
+ 'verbose_name_plural': 'Examination Times',
172
158
  'ordering': ['name'],
173
159
  },
174
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  ),
@@ -194,6 +180,30 @@ class Migration(migrations.Migration):
194
180
  ('raw_probe_data', models.JSONField(blank=True, null=True)),
195
181
  ],
196
182
  ),
183
+ migrations.CreateModel(
184
+ name='Finding',
185
+ fields=[
186
+ ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
187
+ ('name', models.CharField(max_length=100, unique=True)),
188
+ ('name_de', models.CharField(max_length=100, null=True, unique=True)),
189
+ ('name_en', models.CharField(max_length=100, null=True, unique=True)),
190
+ ('description', models.TextField(blank=True, null=True)),
191
+ ('description_de', models.TextField(blank=True, null=True)),
192
+ ('description_en', models.TextField(blank=True, null=True)),
193
+ ],
194
+ ),
195
+ migrations.CreateModel(
196
+ name='FindingClassification',
197
+ fields=[
198
+ ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
199
+ ('name', models.CharField(max_length=255, unique=True)),
200
+ ('name_de', models.CharField(max_length=255, null=True, unique=True)),
201
+ ('name_en', models.CharField(max_length=255, null=True, unique=True)),
202
+ ('description', models.TextField(blank=True)),
203
+ ('description_de', models.TextField(blank=True, null=True)),
204
+ ('description_en', models.TextField(blank=True, null=True)),
205
+ ],
206
+ ),
197
207
  migrations.CreateModel(
198
208
  name='FindingClassificationChoice',
199
209
  fields=[
@@ -216,6 +226,18 @@ class Migration(migrations.Migration):
216
226
  ('description', models.TextField(blank=True)),
217
227
  ],
218
228
  ),
229
+ migrations.CreateModel(
230
+ name='FindingIntervention',
231
+ fields=[
232
+ ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
233
+ ('name', models.CharField(max_length=100, unique=True)),
234
+ ('name_de', models.CharField(max_length=100, null=True, unique=True)),
235
+ ('name_en', models.CharField(max_length=100, null=True, unique=True)),
236
+ ('description', models.TextField(blank=True, null=True)),
237
+ ('description_de', models.TextField(blank=True, null=True)),
238
+ ('description_en', models.TextField(blank=True, null=True)),
239
+ ],
240
+ ),
219
241
  migrations.CreateModel(
220
242
  name='FindingInterventionType',
221
243
  fields=[
@@ -332,11 +354,24 @@ class Migration(migrations.Migration):
332
354
  ('distribution_type', models.CharField(choices=[('uniform', 'Uniform'), ('normal', 'Normal'), ('skewed_normal', 'Skewed Normal')], max_length=20)),
333
355
  ('min_descriptor', models.CharField(max_length=20)),
334
356
  ('max_descriptor', models.CharField(max_length=20)),
357
+ ('min_value', models.FloatField(blank=True, help_text='Lower hard limit for generated values', null=True)),
358
+ ('max_value', models.FloatField(blank=True, help_text='Upper hard limit for generated values', null=True)),
359
+ ('mean', models.FloatField(blank=True, help_text='Mean used for normal or skewed normal distributions', null=True)),
360
+ ('std_dev', models.FloatField(blank=True, help_text='Standard deviation for bell-shaped distributions', null=True)),
361
+ ('skewness', models.FloatField(blank=True, help_text='Shape parameter for skewed normal distributions', null=True)),
335
362
  ],
336
363
  options={
337
364
  'abstract': False,
338
365
  },
339
366
  ),
367
+ migrations.CreateModel(
368
+ name='Organ',
369
+ fields=[
370
+ ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
371
+ ('name', models.CharField(max_length=100, unique=True)),
372
+ ('description', models.TextField(blank=True, null=True)),
373
+ ],
374
+ ),
340
375
  migrations.CreateModel(
341
376
  name='PatientLabSampleType',
342
377
  fields=[
@@ -461,24 +496,6 @@ class Migration(migrations.Migration):
461
496
  ('description', models.TextField(blank=True, null=True)),
462
497
  ],
463
498
  ),
464
- migrations.CreateModel(
465
- name='RuleAttributeDType',
466
- fields=[
467
- ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
468
- ('name', models.CharField(max_length=255, unique=True)),
469
- ],
470
- ),
471
- migrations.CreateModel(
472
- name='RuleType',
473
- fields=[
474
- ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
475
- ('name', models.CharField(max_length=255, unique=True)),
476
- ],
477
- options={
478
- 'verbose_name': 'Rule Type',
479
- 'verbose_name_plural': 'Rule Types',
480
- },
481
- ),
482
499
  migrations.CreateModel(
483
500
  name='ScheduledDays',
484
501
  fields=[
@@ -587,38 +604,6 @@ class Migration(migrations.Migration):
587
604
  ('name', models.CharField(max_length=255)),
588
605
  ],
589
606
  ),
590
- migrations.CreateModel(
591
- name='CaseTemplateRule',
592
- fields=[
593
- ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
594
- ('name', models.CharField(max_length=255)),
595
- ('description', models.TextField(blank=True, null=True)),
596
- ('parent_model', models.CharField(blank=True, max_length=255, null=True)),
597
- ('parent_field', models.CharField(blank=True, max_length=255, null=True)),
598
- ('target_field', models.CharField(blank=True, max_length=255, null=True)),
599
- ('target_model', models.CharField(blank=True, max_length=255, null=True)),
600
- ('rule_values', models.JSONField(blank=True, null=True)),
601
- ('extra_parameters', models.JSONField(blank=True, null=True)),
602
- ('chained_rules', models.ManyToManyField(related_name='calling_rules', to='endoreg_db.casetemplaterule')),
603
- ('rule_type', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.casetemplateruletype')),
604
- ('value_type', models.ForeignKey(null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.casetemplaterulevaluetype')),
605
- ('date_value_distribution', models.ForeignKey(null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.datevaluedistribution')),
606
- ('multiple_categorical_value_distribution', models.ForeignKey(null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.multiplecategoricalvaluedistribution')),
607
- ('numerical_value_distribution', models.ForeignKey(null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.numericvaluedistribution')),
608
- ('single_categorical_value_distribution', models.ForeignKey(null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.singlecategoricalvaluedistribution')),
609
- ],
610
- ),
611
- migrations.CreateModel(
612
- name='CaseTemplate',
613
- fields=[
614
- ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
615
- ('name', models.CharField(max_length=255, unique=True)),
616
- ('description', models.TextField(blank=True, null=True)),
617
- ('rules', models.ManyToManyField(to='endoreg_db.casetemplaterule')),
618
- ('secondary_rules', models.ManyToManyField(related_name='secondary_rules', to='endoreg_db.casetemplaterule')),
619
- ('template_type', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='case_templates', to='endoreg_db.casetemplatetype')),
620
- ],
621
- ),
622
607
  migrations.CreateModel(
623
608
  name='DiseaseClassification',
624
609
  fields=[
@@ -693,12 +678,11 @@ class Migration(migrations.Migration):
693
678
  ],
694
679
  ),
695
680
  migrations.CreateModel(
696
- name='Event',
681
+ name='EventClassification',
697
682
  fields=[
698
683
  ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
699
- ('name', models.CharField(max_length=100, unique=True)),
700
- ('description', models.TextField(blank=True, null=True)),
701
- ('event_classification', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='events', to='endoreg_db.eventclassification')),
684
+ ('name', models.CharField(max_length=255, unique=True)),
685
+ ('event', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='event_classifications', to='endoreg_db.event')),
702
686
  ],
703
687
  ),
704
688
  migrations.CreateModel(
@@ -712,23 +696,35 @@ class Migration(migrations.Migration):
712
696
  ],
713
697
  ),
714
698
  migrations.CreateModel(
715
- name='ExaminationIndicationClassification',
699
+ name='Examination',
716
700
  fields=[
717
701
  ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
718
- ('name', models.CharField(max_length=255, unique=True)),
702
+ ('name', models.CharField(max_length=100, unique=True)),
703
+ ('name_de', models.CharField(max_length=100, null=True, unique=True)),
704
+ ('name_en', models.CharField(max_length=100, null=True, unique=True)),
719
705
  ('description', models.TextField(blank=True, null=True)),
720
- ('examinations', models.ManyToManyField(blank=True, related_name='indication_classifications', to='endoreg_db.examination')),
706
+ ('description_de', models.TextField(blank=True, null=True)),
707
+ ('description_en', models.TextField(blank=True, null=True)),
708
+ ('indications', models.ManyToManyField(blank=True, related_name='examinations', to='endoreg_db.examinationindication')),
709
+ ('examination_times', models.ManyToManyField(blank=True, related_name='examinations', to='endoreg_db.examinationtime')),
710
+ ('examination_types', models.ManyToManyField(blank=True, to='endoreg_db.examinationtype')),
711
+ ('findings', models.ManyToManyField(blank=True, related_name='examinations', to='endoreg_db.finding')),
721
712
  ],
713
+ options={
714
+ 'verbose_name': 'Examination',
715
+ 'verbose_name_plural': 'Examinations',
716
+ 'ordering': ['name'],
717
+ },
722
718
  ),
723
- migrations.CreateModel(
724
- name='ExaminationIndicationClassificationChoice',
725
- fields=[
726
- ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
727
- ('name', models.CharField(max_length=255, unique=True)),
728
- ('subcategories', models.JSONField(default=dict)),
729
- ('numerical_descriptors', models.JSONField(default=dict)),
730
- ('classification', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='choices', to='endoreg_db.examinationindicationclassification')),
731
- ],
719
+ migrations.AddField(
720
+ model_name='examinationindication',
721
+ name='classifications',
722
+ field=models.ManyToManyField(blank=True, related_name='indications', to='endoreg_db.examinationindicationclassification'),
723
+ ),
724
+ migrations.AddField(
725
+ model_name='examinationindicationclassification',
726
+ name='choices',
727
+ field=models.ManyToManyField(blank=True, related_name='classifications', to='endoreg_db.examinationindicationclassificationchoice'),
732
728
  ),
733
729
  migrations.CreateModel(
734
730
  name='ExaminationRequirementSet',
@@ -752,25 +748,10 @@ class Migration(migrations.Migration):
752
748
  'ordering': ['name'],
753
749
  },
754
750
  ),
755
- migrations.CreateModel(
756
- name='ExaminationTime',
757
- fields=[
758
- ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
759
- ('name', models.CharField(max_length=100, unique=True)),
760
- ('start_time', models.TimeField(blank=True, null=True)),
761
- ('end_time', models.TimeField(blank=True, null=True)),
762
- ('time_types', models.ManyToManyField(blank=True, to='endoreg_db.examinationtimetype')),
763
- ],
764
- options={
765
- 'verbose_name': 'Examination Time',
766
- 'verbose_name_plural': 'Examination Times',
767
- 'ordering': ['name'],
768
- },
769
- ),
770
751
  migrations.AddField(
771
- model_name='examination',
772
- name='examination_types',
773
- field=models.ManyToManyField(blank=True, to='endoreg_db.examinationtype'),
752
+ model_name='examinationtime',
753
+ name='time_types',
754
+ field=models.ManyToManyField(blank=True, to='endoreg_db.examinationtimetype'),
774
755
  ),
775
756
  migrations.CreateModel(
776
757
  name='Examiner',
@@ -782,6 +763,9 @@ class Migration(migrations.Migration):
782
763
  ('email', models.EmailField(blank=True, max_length=255, null=True)),
783
764
  ('phone', models.CharField(blank=True, max_length=255, null=True)),
784
765
  ('is_real_person', models.BooleanField(default=True)),
766
+ ('post_code', models.CharField(blank=True, max_length=20, null=True)),
767
+ ('city', models.CharField(blank=True, max_length=255, null=True)),
768
+ ('street', models.CharField(blank=True, max_length=255, null=True)),
785
769
  ('hash', models.CharField(max_length=255, unique=True)),
786
770
  ('center', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.center')),
787
771
  ('gender', models.ForeignKey(null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.gender')),
@@ -790,62 +774,50 @@ class Migration(migrations.Migration):
790
774
  'abstract': False,
791
775
  },
792
776
  ),
793
- migrations.CreateModel(
794
- name='FindingIntervention',
795
- fields=[
796
- ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
797
- ('name', models.CharField(max_length=100, unique=True)),
798
- ('name_de', models.CharField(max_length=100, null=True, unique=True)),
799
- ('name_en', models.CharField(max_length=100, null=True, unique=True)),
800
- ('description', models.TextField(blank=True, null=True)),
801
- ('description_de', models.TextField(blank=True, null=True)),
802
- ('description_en', models.TextField(blank=True, null=True)),
803
- ('contraindications', models.ManyToManyField(blank=True, related_name='contraindicating_finding_interventions', to='endoreg_db.contraindication')),
804
- ('intervention_types', models.ManyToManyField(blank=True, related_name='interventions', to='endoreg_db.findinginterventiontype')),
805
- ],
777
+ migrations.AddField(
778
+ model_name='finding',
779
+ name='finding_classifications',
780
+ field=models.ManyToManyField(blank=True, related_name='findings', to='endoreg_db.findingclassification'),
806
781
  ),
807
- migrations.CreateModel(
808
- name='Finding',
809
- fields=[
810
- ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
811
- ('name', models.CharField(max_length=100, unique=True)),
812
- ('name_de', models.CharField(max_length=100, null=True, unique=True)),
813
- ('name_en', models.CharField(max_length=100, null=True, unique=True)),
814
- ('description', models.TextField(blank=True, null=True)),
815
- ('description_de', models.TextField(blank=True, null=True)),
816
- ('description_en', models.TextField(blank=True, null=True)),
817
- ('examinations', models.ManyToManyField(blank=True, related_name='findings', to='endoreg_db.examination')),
818
- ('finding_interventions', models.ManyToManyField(blank=True, related_name='findings', to='endoreg_db.findingintervention')),
819
- ('finding_types', models.ManyToManyField(blank=True, related_name='findings', to='endoreg_db.findingtype')),
820
- ],
782
+ migrations.AddField(
783
+ model_name='findingclassification',
784
+ name='choices',
785
+ field=models.ManyToManyField(blank=True, related_name='classifications', to='endoreg_db.findingclassificationchoice'),
821
786
  ),
822
- migrations.CreateModel(
823
- name='ExaminationIndication',
824
- fields=[
825
- ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
826
- ('name', models.CharField(max_length=255, unique=True)),
827
- ('description', models.TextField(blank=True, null=True)),
828
- ('examinations', models.ManyToManyField(blank=True, related_name='indications', to='endoreg_db.examination')),
829
- ('classifications', models.ManyToManyField(blank=True, related_name='indications', to='endoreg_db.examinationindicationclassification')),
830
- ('expected_interventions', models.ManyToManyField(blank=True, related_name='indications', to='endoreg_db.findingintervention')),
831
- ],
787
+ migrations.AddField(
788
+ model_name='findingclassification',
789
+ name='classification_types',
790
+ field=models.ManyToManyField(to='endoreg_db.findingclassificationtype'),
832
791
  ),
833
- migrations.CreateModel(
834
- name='FindingClassification',
835
- fields=[
836
- ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
837
- ('name', models.CharField(max_length=255, unique=True)),
838
- ('name_de', models.CharField(max_length=255, null=True, unique=True)),
839
- ('name_en', models.CharField(max_length=255, null=True, unique=True)),
840
- ('description', models.TextField(blank=True)),
841
- ('description_de', models.TextField(blank=True, null=True)),
842
- ('description_en', models.TextField(blank=True, null=True)),
843
- ('examinations', models.ManyToManyField(blank=True, related_name='finding_classifications', to='endoreg_db.examination')),
844
- ('findings', models.ManyToManyField(blank=True, related_name='finding_classifications', to='endoreg_db.finding')),
845
- ('choices', models.ManyToManyField(blank=True, related_name='classifications', to='endoreg_db.findingclassificationchoice')),
846
- ('classification_types', models.ManyToManyField(to='endoreg_db.findingclassificationtype')),
847
- ('finding_types', models.ManyToManyField(blank=True, related_name='finding_classifications', to='endoreg_db.findingtype')),
848
- ],
792
+ migrations.AddField(
793
+ model_name='finding',
794
+ name='caused_by_interventions',
795
+ field=models.ManyToManyField(blank=True, related_name='causes_findings', to='endoreg_db.findingintervention'),
796
+ ),
797
+ migrations.AddField(
798
+ model_name='finding',
799
+ name='finding_interventions',
800
+ field=models.ManyToManyField(blank=True, related_name='findings', to='endoreg_db.findingintervention'),
801
+ ),
802
+ migrations.AddField(
803
+ model_name='examinationindication',
804
+ name='expected_interventions',
805
+ field=models.ManyToManyField(blank=True, related_name='indications', to='endoreg_db.findingintervention'),
806
+ ),
807
+ migrations.AddField(
808
+ model_name='findingintervention',
809
+ name='intervention_types',
810
+ field=models.ManyToManyField(blank=True, related_name='interventions', to='endoreg_db.findinginterventiontype'),
811
+ ),
812
+ migrations.AddField(
813
+ model_name='findingclassification',
814
+ name='finding_types',
815
+ field=models.ManyToManyField(blank=True, related_name='finding_classifications', to='endoreg_db.findingtype'),
816
+ ),
817
+ migrations.AddField(
818
+ model_name='finding',
819
+ name='finding_types',
820
+ field=models.ManyToManyField(blank=True, related_name='findings', to='endoreg_db.findingtype'),
849
821
  ),
850
822
  migrations.AddField(
851
823
  model_name='center',
@@ -862,6 +834,9 @@ class Migration(migrations.Migration):
862
834
  ('email', models.EmailField(blank=True, max_length=255, null=True)),
863
835
  ('phone', models.CharField(blank=True, max_length=255, null=True)),
864
836
  ('is_real_person', models.BooleanField(default=True)),
837
+ ('post_code', models.CharField(blank=True, max_length=20, null=True)),
838
+ ('city', models.CharField(blank=True, max_length=255, null=True)),
839
+ ('street', models.CharField(blank=True, max_length=255, null=True)),
865
840
  ('employee_type', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='employees', to='endoreg_db.employeetype')),
866
841
  ('gender', models.ForeignKey(null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.gender')),
867
842
  ],
@@ -887,6 +862,36 @@ class Migration(migrations.Migration):
887
862
  'indexes': [models.Index(fields=['name'], name='endoreg_db__name_febac5_idx'), models.Index(fields=['abbreviation'], name='endoreg_db__abbrevi_5a07c4_idx')],
888
863
  },
889
864
  ),
865
+ migrations.AddField(
866
+ model_name='findingintervention',
867
+ name='information_sources',
868
+ field=models.ManyToManyField(blank=True, related_name='finding_interventions', to='endoreg_db.informationsource'),
869
+ ),
870
+ migrations.AddField(
871
+ model_name='findingclassification',
872
+ name='information_sources',
873
+ field=models.ManyToManyField(blank=True, related_name='finding_classifications', to='endoreg_db.informationsource'),
874
+ ),
875
+ migrations.AddField(
876
+ model_name='finding',
877
+ name='information_sources',
878
+ field=models.ManyToManyField(blank=True, related_name='findings', to='endoreg_db.informationsource'),
879
+ ),
880
+ migrations.AddField(
881
+ model_name='examinationtime',
882
+ name='information_sources',
883
+ field=models.ManyToManyField(blank=True, related_name='examination_times', to='endoreg_db.informationsource'),
884
+ ),
885
+ migrations.AddField(
886
+ model_name='examinationindication',
887
+ name='information_sources',
888
+ field=models.ManyToManyField(blank=True, related_name='examination_indications', to='endoreg_db.informationsource'),
889
+ ),
890
+ migrations.AddField(
891
+ model_name='examination',
892
+ name='information_sources',
893
+ field=models.ManyToManyField(blank=True, related_name='examinations', to='endoreg_db.informationsource'),
894
+ ),
890
895
  migrations.CreateModel(
891
896
  name='InformationSourceType',
892
897
  fields=[
@@ -942,30 +947,6 @@ class Migration(migrations.Migration):
942
947
  'verbose_name_plural': 'Label Video Segment States',
943
948
  },
944
949
  ),
945
- migrations.CreateModel(
946
- name='LabValue',
947
- fields=[
948
- ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
949
- ('name', models.CharField(max_length=255, unique=True)),
950
- ('abbreviation', models.CharField(blank=True, max_length=10, null=True)),
951
- ('numeric_precision', models.IntegerField(default=3)),
952
- ('default_normal_range', models.JSONField(blank=True, null=True)),
953
- ('normal_range_age_dependent', models.BooleanField(default=False)),
954
- ('normal_range_gender_dependent', models.BooleanField(default=False)),
955
- ('normal_range_special_case', models.BooleanField(default=False)),
956
- ('bound_adjustment_factor', models.FloatField(default=0.1, help_text='Factor for adjusting bounds when generating increased/decreased values, e.g., 0.1 for 10%.')),
957
- ('default_date_value_distribution', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='default_date_value_distribution', to='endoreg_db.datevaluedistribution')),
958
- ('default_multiple_categorical_value_distribution', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='default_multiple_categorical_value_distribution', to='endoreg_db.multiplecategoricalvaluedistribution')),
959
- ('default_numerical_value_distribution', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='default_numerical_value_distribution', to='endoreg_db.numericvaluedistribution')),
960
- ('default_single_categorical_value_distribution', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='default_single_categorical_value_distribution', to='endoreg_db.singlecategoricalvaluedistribution')),
961
- ('default_unit', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.unit')),
962
- ],
963
- ),
964
- migrations.AddField(
965
- model_name='findingintervention',
966
- name='required_lab_values',
967
- field=models.ManyToManyField(blank=True, related_name='required_by_finding_interventions', to='endoreg_db.labvalue'),
968
- ),
969
950
  migrations.AddField(
970
951
  model_name='center',
971
952
  name='last_names',
@@ -1012,7 +993,7 @@ class Migration(migrations.Migration):
1012
993
  ('name', models.CharField(help_text="User-defined name for this specific model metadata set (e.g., 'segmentation_base').", max_length=255)),
1013
994
  ('version', models.CharField(help_text="Version identifier for this metadata set (e.g., '1', '2a').", max_length=255)),
1014
995
  ('activation', models.CharField(default='sigmoid', help_text="Output activation function (e.g., 'sigmoid', 'softmax', 'none').", max_length=50)),
1015
- ('weights', models.FileField(blank=True, help_text='Path to the model weights file (.ckpt), relative to MEDIA_ROOT.', null=True, upload_to='model_weights', validators=[django.core.validators.FileExtensionValidator(allowed_extensions=['ckpt'])])),
996
+ ('weights', models.FileField(blank=True, help_text='Path to the model weights file (.safetensors), relative to MEDIA_ROOT.', null=True, upload_to='model_weights', validators=[django.core.validators.FileExtensionValidator(allowed_extensions=['safetensors', 'pth', 'pt'])])),
1016
997
  ('mean', models.CharField(default='0.45211223,0.27139644,0.19264949', help_text='Comma-separated mean values for input normalization.', max_length=255)),
1017
998
  ('std', models.CharField(default='0.31418097,0.21088019,0.16059452', help_text='Comma-separated standard deviation values for input normalization.', max_length=255)),
1018
999
  ('size_x', models.IntegerField(default=716, help_text='Expected input image width.')),
@@ -1025,6 +1006,12 @@ class Migration(migrations.Migration):
1025
1006
  ('labelset', models.ForeignKey(help_text='The set of labels this model version predicts.', on_delete=django.db.models.deletion.CASCADE, related_name='model_metadata', to='endoreg_db.labelset')),
1026
1007
  ('model', models.ForeignKey(help_text='The base AI model architecture this metadata belongs to.', on_delete=django.db.models.deletion.CASCADE, related_name='metadata_versions', to='endoreg_db.aimodel')),
1027
1008
  ],
1009
+ options={
1010
+ 'verbose_name': 'Model Metadata',
1011
+ 'verbose_name_plural': 'Model Metadata',
1012
+ 'ordering': ['-date_created'],
1013
+ 'unique_together': {('name', 'version', 'model')},
1014
+ },
1028
1015
  ),
1029
1016
  migrations.AddField(
1030
1017
  model_name='aimodel',
@@ -1045,12 +1032,22 @@ class Migration(migrations.Migration):
1045
1032
  field=models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='ai_models', to='endoreg_db.modeltype'),
1046
1033
  ),
1047
1034
  migrations.CreateModel(
1048
- name='Organ',
1035
+ name='LabValue',
1049
1036
  fields=[
1050
1037
  ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
1051
- ('name', models.CharField(max_length=100, unique=True)),
1052
- ('description', models.TextField(blank=True, null=True)),
1053
- ('location_choices', models.ManyToManyField(blank=True, related_name='organs', to='endoreg_db.findingclassificationchoice')),
1038
+ ('name', models.CharField(max_length=255, unique=True)),
1039
+ ('abbreviation', models.CharField(blank=True, max_length=10, null=True)),
1040
+ ('numeric_precision', models.IntegerField(default=3)),
1041
+ ('default_normal_range', models.JSONField(blank=True, null=True)),
1042
+ ('normal_range_age_dependent', models.BooleanField(default=False)),
1043
+ ('normal_range_gender_dependent', models.BooleanField(default=False)),
1044
+ ('normal_range_special_case', models.BooleanField(default=False)),
1045
+ ('bound_adjustment_factor', models.FloatField(default=0.1, help_text='Factor for adjusting bounds when generating increased/decreased values, e.g., 0.1 for 10%.')),
1046
+ ('default_date_value_distribution', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='default_date_value_distribution', to='endoreg_db.datevaluedistribution')),
1047
+ ('default_multiple_categorical_value_distribution', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='default_multiple_categorical_value_distribution', to='endoreg_db.multiplecategoricalvaluedistribution')),
1048
+ ('default_numerical_value_distribution', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='default_numerical_value_distribution', to='endoreg_db.numericvaluedistribution')),
1049
+ ('default_single_categorical_value_distribution', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='default_single_categorical_value_distribution', to='endoreg_db.singlecategoricalvaluedistribution')),
1050
+ ('default_unit', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.unit')),
1054
1051
  ],
1055
1052
  ),
1056
1053
  migrations.CreateModel(
@@ -1060,6 +1057,9 @@ class Migration(migrations.Migration):
1060
1057
  ('email', models.EmailField(blank=True, max_length=255, null=True)),
1061
1058
  ('phone', models.CharField(blank=True, max_length=255, null=True)),
1062
1059
  ('is_real_person', models.BooleanField(default=True)),
1060
+ ('post_code', models.CharField(blank=True, max_length=20, null=True)),
1061
+ ('city', models.CharField(blank=True, max_length=255, null=True)),
1062
+ ('street', models.CharField(blank=True, max_length=255, null=True)),
1063
1063
  ('first_name', models.CharField(max_length=100)),
1064
1064
  ('last_name', models.CharField(max_length=100)),
1065
1065
  ('dob', models.DateField(blank=True, null=True)),
@@ -1149,7 +1149,7 @@ class Migration(migrations.Migration):
1149
1149
  ('text', models.TextField(blank=True, null=True)),
1150
1150
  ('date', models.DateField(blank=True, null=True)),
1151
1151
  ('time', models.TimeField(blank=True, null=True)),
1152
- ('file', models.FileField(blank=True, null=True, upload_to=pathlib.PurePosixPath('pdfs'))),
1152
+ ('file', models.FileField(blank=True, null=True, upload_to='pdfs')),
1153
1153
  ('center', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.center')),
1154
1154
  ('type', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.documenttype')),
1155
1155
  ('examiners', models.ManyToManyField(blank=True, to='endoreg_db.examiner')),
@@ -1169,6 +1169,15 @@ class Migration(migrations.Migration):
1169
1169
  ('patient_examination', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='indications', to='endoreg_db.patientexamination')),
1170
1170
  ],
1171
1171
  ),
1172
+ migrations.CreateModel(
1173
+ name='PatientExternalID',
1174
+ fields=[
1175
+ ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
1176
+ ('external_id', models.CharField(max_length=255)),
1177
+ ('origin', models.CharField(max_length=255)),
1178
+ ('patient', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='external_ids', to='endoreg_db.patient')),
1179
+ ],
1180
+ ),
1172
1181
  migrations.CreateModel(
1173
1182
  name='PatientFinding',
1174
1183
  fields=[
@@ -1375,11 +1384,12 @@ class Migration(migrations.Migration):
1375
1384
  ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
1376
1385
  ('name', models.CharField(max_length=100, unique=True)),
1377
1386
  ('description', models.TextField(blank=True, null=True)),
1378
- ('numeric_value', models.FloatField(blank=True, help_text='Numeric value for the requirement. If not set, the requirement is not used in calculations.', null=True)),
1379
- ('numeric_value_min', models.FloatField(blank=True, help_text='Minimum numeric value for the requirement. If not set, the requirement is not used in calculations.', null=True)),
1380
- ('numeric_value_max', models.FloatField(blank=True, help_text='Maximum numeric value for the requirement. If not set, the requirement is not used in calculations.', null=True)),
1381
- ('string_value', models.CharField(blank=True, help_text='String value for the requirement. If not set, the requirement is not used in calculations.', max_length=100, null=True)),
1382
- ('string_values', models.TextField(blank=True, help_text=" ','-separated list of string values for the requirement.If not set, the requirement is not used in calculations.", null=True)),
1387
+ ('operator_instructions', models.TextField(help_text='semicolon-separated list of target attributes for the requirement')),
1388
+ ('numeric_value', models.FloatField(blank=True, help_text='Numeric value for the requirement. ons.', null=True)),
1389
+ ('numeric_value_min', models.FloatField(blank=True, help_text='Minimum numeric value for the requirement. ons.', null=True)),
1390
+ ('numeric_value_max', models.FloatField(blank=True, help_text='Maximum numeric value for the requirement. ons.', null=True)),
1391
+ ('string_value', models.CharField(blank=True, help_text='String value for the requirement. ons.', max_length=100, null=True)),
1392
+ ('string_values', models.TextField(blank=True, help_text=" ','-separated list of string values for the requirement.ons.", null=True)),
1383
1393
  ('disease_classification_choices', models.ManyToManyField(blank=True, related_name='required_in', to='endoreg_db.diseaseclassificationchoice')),
1384
1394
  ('diseases', models.ManyToManyField(blank=True, related_name='required_in', to='endoreg_db.disease')),
1385
1395
  ('events', models.ManyToManyField(blank=True, related_name='required_in', to='endoreg_db.event')),
@@ -1395,7 +1405,7 @@ class Migration(migrations.Migration):
1395
1405
  ('medication_intake_times', models.ManyToManyField(blank=True, related_name='required_in', to='endoreg_db.medicationintaketime')),
1396
1406
  ('medication_schedules', models.ManyToManyField(blank=True, related_name='required_in', to='endoreg_db.medicationschedule')),
1397
1407
  ('medications', models.ManyToManyField(blank=True, related_name='required_in', to='endoreg_db.medication')),
1398
- ('operators', models.ManyToManyField(blank=True, related_name='required_in', to='endoreg_db.requirementoperator')),
1408
+ ('operator', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='required_in', to='endoreg_db.requirementoperator')),
1399
1409
  ('requirement_types', models.ManyToManyField(blank=True, related_name='linked_requirements', to='endoreg_db.requirementtype')),
1400
1410
  ('unit', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='required_in', to='endoreg_db.unit')),
1401
1411
  ],
@@ -1412,45 +1422,28 @@ class Migration(migrations.Migration):
1412
1422
  ('risk_type', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='risks', to='endoreg_db.risktype')),
1413
1423
  ],
1414
1424
  ),
1415
- migrations.CreateModel(
1416
- name='Rule',
1417
- fields=[
1418
- ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
1419
- ('name', models.CharField(max_length=255, unique=True)),
1420
- ('description', models.TextField(blank=True, null=True)),
1421
- ('attribute_key', models.CharField(max_length=255)),
1422
- ('attribute_dtype', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.ruleattributedtype')),
1423
- ('rule_type', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.ruletype')),
1424
- ],
1425
- options={
1426
- 'verbose_name': 'Rule',
1427
- 'verbose_name_plural': 'Rules',
1428
- },
1429
- ),
1430
- migrations.CreateModel(
1431
- name='Ruleset',
1432
- fields=[
1433
- ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
1434
- ('name', models.CharField(max_length=255, unique=True)),
1435
- ('rules', models.ManyToManyField(to='endoreg_db.rule')),
1436
- ],
1437
- ),
1438
1425
  migrations.CreateModel(
1439
1426
  name='SensitiveMeta',
1440
1427
  fields=[
1441
1428
  ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
1442
1429
  ('examination_date', models.DateField(blank=True, null=True)),
1430
+ ('examination_time', models.TimeField(blank=True, null=True)),
1431
+ ('casenumber', models.CharField(blank=True, max_length=255, null=True)),
1432
+ ('file_path', models.CharField(blank=True, max_length=1024, null=True)),
1443
1433
  ('patient_first_name', models.CharField(blank=True, max_length=255, null=True)),
1444
1434
  ('patient_last_name', models.CharField(blank=True, max_length=255, null=True)),
1445
- ('patient_dob', models.DateTimeField(blank=True, help_text='Date of birth (can be auto-generated if missing).', null=True)),
1435
+ ('patient_dob', models.DateTimeField(blank=True, help_text='Date of birth (can be auto-generated).', null=True)),
1446
1436
  ('examiner_first_name', models.CharField(blank=True, editable=False, max_length=255, null=True)),
1447
1437
  ('examiner_last_name', models.CharField(blank=True, editable=False, max_length=255, null=True)),
1448
- ('examination_hash', models.CharField(blank=True, db_index=True, editable=False, max_length=64, null=True)),
1449
1438
  ('patient_hash', models.CharField(blank=True, db_index=True, editable=False, max_length=64, null=True)),
1439
+ ('examination_hash', models.CharField(blank=True, db_index=True, editable=False, max_length=64, null=True)),
1450
1440
  ('endoscope_type', models.CharField(blank=True, max_length=255, null=True)),
1451
1441
  ('endoscope_sn', models.CharField(blank=True, max_length=255, null=True)),
1442
+ ('text', models.TextField(blank=True, null=True)),
1443
+ ('anonymized_text', models.TextField(blank=True, null=True)),
1452
1444
  ('center', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.center')),
1453
- ('examiners', models.ManyToManyField(blank=True, help_text='Pseudo-anonymized examiner(s) associated with the examination.', to='endoreg_db.examiner')),
1445
+ ('examiners', models.ManyToManyField(blank=True, help_text='Pseudo-anonymized examiner(s)', to='endoreg_db.examiner')),
1446
+ ('external_id', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.patientexternalid')),
1454
1447
  ('patient_gender', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.gender')),
1455
1448
  ('pseudo_examination', models.ForeignKey(blank=True, help_text='FK to the pseudo-anonymized PatientExamination record.', null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.patientexamination')),
1456
1449
  ('pseudo_patient', models.ForeignKey(blank=True, help_text='FK to the pseudo-anonymized Patient record.', null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.patient')),
@@ -1465,8 +1458,8 @@ class Migration(migrations.Migration):
1465
1458
  ('date_created', models.DateTimeField(auto_now_add=True)),
1466
1459
  ('date_modified', models.DateTimeField(auto_now=True)),
1467
1460
  ('anonymized', models.BooleanField(default=False, help_text='True if the PDF has been anonymized.')),
1468
- ('file', models.FileField(upload_to='raw_pdfs', validators=[django.core.validators.FileExtensionValidator(allowed_extensions=['pdf'])])),
1469
- ('anonymized_file', models.FileField(blank=True, null=True, upload_to='raw_pdfs', validators=[django.core.validators.FileExtensionValidator(allowed_extensions=['pdf'])])),
1461
+ ('file', models.FileField(upload_to='pdfs', validators=[django.core.validators.FileExtensionValidator(allowed_extensions=['pdf'])])),
1462
+ ('anonymized_file', models.FileField(blank=True, null=True, upload_to='pdfs', validators=[django.core.validators.FileExtensionValidator(allowed_extensions=['pdf'])])),
1470
1463
  ('state_report_processing_required', models.BooleanField(default=True)),
1471
1464
  ('state_report_processed', models.BooleanField(default=False)),
1472
1465
  ('raw_meta', models.JSONField(blank=True, null=True)),
@@ -1489,7 +1482,7 @@ class Migration(migrations.Migration):
1489
1482
  ('text', models.TextField(blank=True, null=True)),
1490
1483
  ('date', models.DateField(blank=True, null=True)),
1491
1484
  ('time', models.TimeField(blank=True, null=True)),
1492
- ('file', models.FileField(blank=True, null=True, upload_to=pathlib.PurePosixPath('pdfs'))),
1485
+ ('file', models.FileField(blank=True, null=True, upload_to='pdfs')),
1493
1486
  ('center', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.center')),
1494
1487
  ('type', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.documenttype')),
1495
1488
  ('examiners', models.ManyToManyField(blank=True, to='endoreg_db.examiner')),
@@ -1540,7 +1533,7 @@ class Migration(migrations.Migration):
1540
1533
  ('description', models.TextField(blank=True, null=True)),
1541
1534
  ('start_time', models.TimeField()),
1542
1535
  ('end_time', models.TimeField()),
1543
- ('estimated_presence_fraction', models.DecimalField(decimal_places=4, default=0.0, max_digits=5)),
1536
+ ('estimated_presence_fraction', models.DecimalField(decimal_places=4, default=Decimal('0'), max_digits=5)),
1544
1537
  ('center', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='center_shifts', to='endoreg_db.center')),
1545
1538
  ('scheduled_days', models.ManyToManyField(related_name='center_shifts', to='endoreg_db.scheduleddays')),
1546
1539
  ('shift', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='center_shifts', to='endoreg_db.shift')),
@@ -1552,6 +1545,7 @@ class Migration(migrations.Migration):
1552
1545
  ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
1553
1546
  ('name', models.CharField(max_length=100, unique=True)),
1554
1547
  ('description', models.TextField(blank=True, null=True)),
1548
+ ('depends_on', models.ManyToManyField(blank=True, help_text="Andere RequirementSets, die zuerst erfüllt sein müssen, bevor dieses Set geprüft wird ('after').", related_name='dependents', to='endoreg_db.requirementset')),
1555
1549
  ('information_sources', models.ManyToManyField(blank=True, related_name='requirement_sets', to='endoreg_db.informationsource')),
1556
1550
  ('links_to_sets', models.ManyToManyField(blank=True, related_name='links_from_sets', to='endoreg_db.requirementset')),
1557
1551
  ('reqset_exam_links', models.ManyToManyField(blank=True, related_name='requirement_set', to='endoreg_db.examinationrequirementset')),
@@ -1726,6 +1720,22 @@ class Migration(migrations.Migration):
1726
1720
  name='video_meta',
1727
1721
  field=models.OneToOneField(blank=True, null=True, on_delete=django.db.models.deletion.SET_NULL, related_name='video_file', to='endoreg_db.videometa'),
1728
1722
  ),
1723
+ migrations.CreateModel(
1724
+ name='VideoMetadata',
1725
+ fields=[
1726
+ ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
1727
+ ('sensitive_frame_count', models.IntegerField(blank=True, help_text='Number of frames detected as containing sensitive information', null=True)),
1728
+ ('sensitive_ratio', models.FloatField(blank=True, help_text='Ratio of sensitive frames to total frames (0.0-1.0)', null=True)),
1729
+ ('sensitive_frame_ids', models.TextField(blank=True, help_text='JSON array of sensitive frame indices (0-based)', null=True)),
1730
+ ('analyzed_at', models.DateTimeField(auto_now=True, help_text='Timestamp of last analysis')),
1731
+ ('video', models.OneToOneField(help_text='Video file this metadata belongs to', on_delete=django.db.models.deletion.CASCADE, related_name='metadata', to='endoreg_db.videofile')),
1732
+ ],
1733
+ options={
1734
+ 'verbose_name': 'Video Metadata',
1735
+ 'verbose_name_plural': 'Video Metadata',
1736
+ 'db_table': 'video_metadata',
1737
+ },
1738
+ ),
1729
1739
  migrations.CreateModel(
1730
1740
  name='VideoPredictionMeta',
1731
1741
  fields=[
@@ -1742,6 +1752,27 @@ class Migration(migrations.Migration):
1742
1752
  name='prediction_meta',
1743
1753
  field=models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.SET_NULL, related_name='label_video_segments', to='endoreg_db.videopredictionmeta'),
1744
1754
  ),
1755
+ migrations.CreateModel(
1756
+ name='VideoProcessingHistory',
1757
+ fields=[
1758
+ ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
1759
+ ('operation', models.CharField(choices=[('mask_overlay', 'Mask Overlay'), ('frame_removal', 'Frame Removal'), ('analysis', 'Sensitivity Analysis'), ('reprocessing', 'Full Reprocessing')], help_text='Type of processing operation', max_length=50)),
1760
+ ('status', models.CharField(choices=[('pending', 'Pending'), ('running', 'Running'), ('success', 'Success'), ('failure', 'Failure'), ('cancelled', 'Cancelled')], default='pending', help_text='Current status of the operation', max_length=20)),
1761
+ ('config', models.JSONField(default=dict, help_text='Operation configuration (mask settings, frame list, etc.)')),
1762
+ ('output_file', models.CharField(blank=True, help_text='Path to output file (relative to MEDIA_ROOT)', max_length=500)),
1763
+ ('details', models.TextField(blank=True, help_text='Additional details or error messages')),
1764
+ ('task_id', models.CharField(blank=True, help_text='Celery task ID for progress tracking', max_length=100)),
1765
+ ('created_at', models.DateTimeField(auto_now_add=True, help_text='When the operation was started')),
1766
+ ('completed_at', models.DateTimeField(blank=True, help_text='When the operation completed (success or failure)', null=True)),
1767
+ ('video', models.ForeignKey(help_text='Video file this operation was performed on', on_delete=django.db.models.deletion.CASCADE, related_name='processing_history', to='endoreg_db.videofile')),
1768
+ ],
1769
+ options={
1770
+ 'verbose_name': 'Video Processing History',
1771
+ 'verbose_name_plural': 'Video Processing Histories',
1772
+ 'db_table': 'video_processing_history',
1773
+ 'ordering': ['-created_at'],
1774
+ },
1775
+ ),
1745
1776
  migrations.CreateModel(
1746
1777
  name='VideoSegmentationAnnotation',
1747
1778
  fields=[
@@ -1802,6 +1833,10 @@ class Migration(migrations.Migration):
1802
1833
  'indexes': [models.Index(fields=['frame', 'label'], name='endoreg_db__frame_i_47f916_idx'), models.Index(fields=['frame'], name='endoreg_db__frame_i_92c75a_idx')],
1803
1834
  },
1804
1835
  ),
1836
+ migrations.AddConstraint(
1837
+ model_name='patientexternalid',
1838
+ constraint=models.UniqueConstraint(fields=('origin', 'external_id'), name='uniq_patient_external_id_per_origin'),
1839
+ ),
1805
1840
  migrations.AddIndex(
1806
1841
  model_name='patientfinding',
1807
1842
  index=models.Index(fields=['patient_examination', 'finding'], name='endoreg_db__patient_54869f_idx'),
@@ -1850,6 +1885,18 @@ class Migration(migrations.Migration):
1850
1885
  model_name='labelvideosegment',
1851
1886
  constraint=models.CheckConstraint(condition=models.Q(('start_frame_number__lt', models.F('end_frame_number'))), name='segment_start_lt_end'),
1852
1887
  ),
1888
+ migrations.AddIndex(
1889
+ model_name='videoprocessinghistory',
1890
+ index=models.Index(fields=['video', '-created_at'], name='video_proce_video_i_98ffe0_idx'),
1891
+ ),
1892
+ migrations.AddIndex(
1893
+ model_name='videoprocessinghistory',
1894
+ index=models.Index(fields=['task_id'], name='video_proce_task_id_ec8b15_idx'),
1895
+ ),
1896
+ migrations.AddIndex(
1897
+ model_name='videoprocessinghistory',
1898
+ index=models.Index(fields=['status'], name='video_proce_status_6f71fd_idx'),
1899
+ ),
1853
1900
  migrations.AddConstraint(
1854
1901
  model_name='videosegmentationannotation',
1855
1902
  constraint=models.CheckConstraint(condition=models.Q(('start_time__lt', models.F('stop_time'))), name='start_time_less_than_stop_time'),