endoreg-db 0.8.4.4__py3-none-any.whl → 0.8.8.0__py3-none-any.whl
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- endoreg_db/authz/auth.py +74 -0
- endoreg_db/authz/backends.py +168 -0
- endoreg_db/authz/management/commands/list_routes.py +18 -0
- endoreg_db/authz/middleware.py +83 -0
- endoreg_db/authz/permissions.py +127 -0
- endoreg_db/authz/policy.py +218 -0
- endoreg_db/authz/views_auth.py +66 -0
- endoreg_db/config/env.py +13 -8
- endoreg_db/data/__init__.py +8 -31
- endoreg_db/data/_examples/disease.yaml +55 -0
- endoreg_db/data/_examples/disease_classification.yaml +13 -0
- endoreg_db/data/_examples/disease_classification_choice.yaml +62 -0
- endoreg_db/data/_examples/event.yaml +64 -0
- endoreg_db/data/_examples/examination.yaml +72 -0
- endoreg_db/data/_examples/finding/anatomy_colon.yaml +128 -0
- endoreg_db/data/_examples/finding/colonoscopy.yaml +40 -0
- endoreg_db/data/_examples/finding/colonoscopy_bowel_prep.yaml +56 -0
- endoreg_db/data/_examples/finding/complication.yaml +16 -0
- endoreg_db/data/_examples/finding/data.yaml +105 -0
- endoreg_db/data/_examples/finding/examination_setting.yaml +16 -0
- endoreg_db/data/_examples/finding/medication_related.yaml +18 -0
- endoreg_db/data/_examples/finding/outcome.yaml +12 -0
- endoreg_db/data/_examples/finding_classification/colonoscopy_bowel_preparation.yaml +68 -0
- endoreg_db/data/_examples/finding_classification/colonoscopy_jnet.yaml +22 -0
- endoreg_db/data/_examples/finding_classification/colonoscopy_kudo.yaml +25 -0
- endoreg_db/data/_examples/finding_classification/colonoscopy_lesion_circularity.yaml +20 -0
- endoreg_db/data/_examples/finding_classification/colonoscopy_lesion_planarity.yaml +24 -0
- endoreg_db/data/_examples/finding_classification/colonoscopy_lesion_size.yaml +68 -0
- endoreg_db/data/_examples/finding_classification/colonoscopy_lesion_surface.yaml +20 -0
- endoreg_db/data/_examples/finding_classification/colonoscopy_location.yaml +80 -0
- endoreg_db/data/_examples/finding_classification/colonoscopy_lst.yaml +21 -0
- endoreg_db/data/_examples/finding_classification/colonoscopy_nice.yaml +20 -0
- endoreg_db/data/_examples/finding_classification/colonoscopy_paris.yaml +26 -0
- endoreg_db/data/_examples/finding_classification/colonoscopy_sano.yaml +22 -0
- endoreg_db/data/_examples/finding_classification/colonoscopy_summary.yaml +53 -0
- endoreg_db/data/_examples/finding_classification/complication_generic.yaml +25 -0
- endoreg_db/data/_examples/finding_classification/examination_setting_generic.yaml +40 -0
- endoreg_db/data/_examples/finding_classification/histology_colo.yaml +51 -0
- endoreg_db/data/_examples/finding_classification/intervention_required.yaml +26 -0
- endoreg_db/data/_examples/finding_classification/medication_related.yaml +23 -0
- endoreg_db/data/_examples/finding_classification/visualized.yaml +33 -0
- endoreg_db/data/_examples/finding_classification_choice/bowel_preparation.yaml +78 -0
- endoreg_db/data/_examples/finding_classification_choice/colon_lesion_circularity_default.yaml +32 -0
- endoreg_db/data/_examples/finding_classification_choice/colon_lesion_jnet.yaml +15 -0
- endoreg_db/data/_examples/finding_classification_choice/colon_lesion_kudo.yaml +23 -0
- endoreg_db/data/_examples/finding_classification_choice/colon_lesion_lst.yaml +15 -0
- endoreg_db/data/_examples/finding_classification_choice/colon_lesion_nice.yaml +17 -0
- endoreg_db/data/_examples/finding_classification_choice/colon_lesion_paris.yaml +57 -0
- endoreg_db/data/_examples/finding_classification_choice/colon_lesion_planarity_default.yaml +49 -0
- endoreg_db/data/_examples/finding_classification_choice/colon_lesion_sano.yaml +14 -0
- endoreg_db/data/_examples/finding_classification_choice/colon_lesion_surface_intact_default.yaml +36 -0
- endoreg_db/data/_examples/finding_classification_choice/colonoscopy_location.yaml +229 -0
- endoreg_db/data/_examples/finding_classification_choice/colonoscopy_not_complete_reason.yaml +19 -0
- endoreg_db/data/_examples/finding_classification_choice/colonoscopy_size.yaml +82 -0
- endoreg_db/data/_examples/finding_classification_choice/colonoscopy_summary_worst_finding.yaml +15 -0
- endoreg_db/data/_examples/finding_classification_choice/complication_generic_types.yaml +15 -0
- endoreg_db/data/_examples/finding_classification_choice/examination_setting_generic_types.yaml +15 -0
- endoreg_db/data/_examples/finding_classification_choice/histology.yaml +24 -0
- endoreg_db/data/_examples/finding_classification_choice/histology_polyp.yaml +20 -0
- endoreg_db/data/_examples/finding_classification_choice/outcome.yaml +19 -0
- endoreg_db/data/_examples/finding_classification_choice/yes_no_na.yaml +11 -0
- endoreg_db/data/_examples/finding_classification_type/colonoscopy_basic.yaml +48 -0
- endoreg_db/data/_examples/finding_intervention/endoscopy.yaml +43 -0
- endoreg_db/data/_examples/finding_intervention/endoscopy_colonoscopy.yaml +168 -0
- endoreg_db/data/_examples/finding_intervention/endoscopy_egd.yaml +128 -0
- endoreg_db/data/_examples/finding_intervention/endoscopy_ercp.yaml +32 -0
- endoreg_db/data/_examples/finding_intervention/endoscopy_eus_lower.yaml +9 -0
- endoreg_db/data/_examples/finding_intervention/endoscopy_eus_upper.yaml +36 -0
- endoreg_db/data/_examples/finding_intervention_type/endoscopy.yaml +15 -0
- endoreg_db/data/_examples/finding_type/data.yaml +43 -0
- endoreg_db/data/_examples/requirement/age.yaml +26 -0
- endoreg_db/data/_examples/requirement/colonoscopy_baseline_austria.yaml +45 -0
- endoreg_db/data/_examples/requirement/disease_cardiovascular.yaml +79 -0
- endoreg_db/data/_examples/requirement/disease_classification_choice_cardiovascular.yaml +41 -0
- endoreg_db/data/_examples/requirement/disease_hepatology.yaml +12 -0
- endoreg_db/data/_examples/requirement/disease_misc.yaml +12 -0
- endoreg_db/data/_examples/requirement/disease_renal.yaml +96 -0
- endoreg_db/data/_examples/requirement/endoscopy_bleeding_risk.yaml +59 -0
- endoreg_db/data/_examples/requirement/event_cardiology.yaml +251 -0
- endoreg_db/data/_examples/requirement/event_requirements.yaml +145 -0
- endoreg_db/data/_examples/requirement/finding_colon_polyp.yaml +50 -0
- endoreg_db/data/_examples/requirement/gender.yaml +25 -0
- endoreg_db/data/_examples/requirement/lab_value.yaml +441 -0
- endoreg_db/data/_examples/requirement/medication.yaml +93 -0
- endoreg_db/data/_examples/requirement_operator/age.yaml +13 -0
- endoreg_db/data/_examples/requirement_operator/lab_operators.yaml +129 -0
- endoreg_db/data/_examples/requirement_operator/model_operators.yaml +96 -0
- endoreg_db/data/_examples/requirement_set/01_endoscopy_generic.yaml +48 -0
- endoreg_db/data/_examples/requirement_set/colonoscopy_austria_screening.yaml +57 -0
- endoreg_db/data/_examples/yaml_examples.xlsx +0 -0
- endoreg_db/data/ai_model_meta/default_multilabel_classification.yaml +4 -3
- endoreg_db/data/event_classification/data.yaml +4 -0
- endoreg_db/data/event_classification_choice/data.yaml +9 -0
- endoreg_db/data/finding_classification/colonoscopy_bowel_preparation.yaml +43 -70
- endoreg_db/data/finding_classification/colonoscopy_lesion_size.yaml +22 -52
- endoreg_db/data/finding_classification/colonoscopy_location.yaml +31 -62
- endoreg_db/data/finding_classification/histology_colo.yaml +28 -36
- endoreg_db/data/requirement/colon_polyp_intervention.yaml +49 -0
- endoreg_db/data/requirement/coloreg_colon_polyp.yaml +49 -0
- endoreg_db/data/requirement_set/01_endoscopy_generic.yaml +31 -12
- endoreg_db/data/requirement_set/01_laboratory.yaml +13 -0
- endoreg_db/data/requirement_set/02_endoscopy_bleeding_risk.yaml +46 -0
- endoreg_db/data/requirement_set/90_coloreg.yaml +178 -0
- endoreg_db/data/requirement_set/_old_ +109 -0
- endoreg_db/data/requirement_set_type/data.yaml +21 -0
- endoreg_db/data/setup_config.yaml +4 -4
- endoreg_db/data/tag/requirement_set_tags.yaml +21 -0
- endoreg_db/exceptions.py +5 -2
- endoreg_db/helpers/data_loader.py +1 -1
- endoreg_db/management/commands/create_model_meta_from_huggingface.py +21 -10
- endoreg_db/management/commands/create_multilabel_model_meta.py +299 -129
- endoreg_db/management/commands/import_video.py +9 -10
- endoreg_db/management/commands/import_video_with_classification.py +1 -1
- endoreg_db/management/commands/init_default_ai_model.py +1 -1
- endoreg_db/management/commands/list_routes.py +18 -0
- endoreg_db/management/commands/load_ai_model_data.py +2 -1
- endoreg_db/management/commands/load_center_data.py +12 -12
- endoreg_db/management/commands/load_requirement_data.py +60 -31
- endoreg_db/management/commands/load_requirement_set_tags.py +95 -0
- endoreg_db/management/commands/setup_endoreg_db.py +14 -10
- endoreg_db/management/commands/storage_management.py +271 -203
- endoreg_db/migrations/0001_initial.py +1799 -1300
- endoreg_db/migrations/0002_requirementset_depends_on.py +18 -0
- endoreg_db/migrations/_old/0001_initial.py +1857 -0
- endoreg_db/migrations/_old/0004_employee_city_employee_post_code_employee_street_and_more.py +68 -0
- endoreg_db/migrations/_old/0004_remove_casetemplate_rules_and_more.py +77 -0
- endoreg_db/migrations/_old/0005_merge_20251111_1003.py +14 -0
- endoreg_db/migrations/_old/0006_sensitivemeta_anonymized_text_and_more.py +68 -0
- endoreg_db/migrations/_old/0007_remove_rule_attribute_dtype_remove_rule_rule_type_and_more.py +89 -0
- endoreg_db/migrations/_old/0008_remove_event_event_classification_and_more.py +27 -0
- endoreg_db/migrations/_old/0009_alter_modelmeta_options_and_more.py +21 -0
- endoreg_db/models/__init__.py +78 -123
- endoreg_db/models/administration/__init__.py +21 -42
- endoreg_db/models/administration/ai/active_model.py +2 -2
- endoreg_db/models/administration/ai/ai_model.py +7 -6
- endoreg_db/models/administration/case/__init__.py +1 -15
- endoreg_db/models/administration/case/case.py +3 -3
- endoreg_db/models/administration/case/case_template/__init__.py +2 -14
- endoreg_db/models/administration/case/case_template/case_template.py +2 -124
- endoreg_db/models/administration/case/case_template/case_template_rule.py +2 -268
- endoreg_db/models/administration/case/case_template/case_template_rule_value.py +2 -85
- endoreg_db/models/administration/case/case_template/case_template_type.py +2 -25
- endoreg_db/models/administration/center/center.py +33 -19
- endoreg_db/models/administration/center/center_product.py +12 -9
- endoreg_db/models/administration/center/center_resource.py +25 -19
- endoreg_db/models/administration/center/center_shift.py +21 -17
- endoreg_db/models/administration/center/center_waste.py +16 -8
- endoreg_db/models/administration/person/__init__.py +2 -0
- endoreg_db/models/administration/person/employee/employee.py +10 -5
- endoreg_db/models/administration/person/employee/employee_qualification.py +9 -4
- endoreg_db/models/administration/person/employee/employee_type.py +12 -6
- endoreg_db/models/administration/person/examiner/examiner.py +13 -11
- endoreg_db/models/administration/person/patient/__init__.py +2 -0
- endoreg_db/models/administration/person/patient/patient.py +103 -100
- endoreg_db/models/administration/person/patient/patient_external_id.py +37 -0
- endoreg_db/models/administration/person/person.py +4 -0
- endoreg_db/models/administration/person/profession/__init__.py +8 -4
- endoreg_db/models/administration/person/user/portal_user_information.py +11 -7
- endoreg_db/models/administration/product/product.py +20 -15
- endoreg_db/models/administration/product/product_material.py +17 -18
- endoreg_db/models/administration/product/product_weight.py +12 -8
- endoreg_db/models/administration/product/reference_product.py +23 -55
- endoreg_db/models/administration/qualification/qualification.py +7 -3
- endoreg_db/models/administration/qualification/qualification_type.py +7 -3
- endoreg_db/models/administration/shift/scheduled_days.py +8 -5
- endoreg_db/models/administration/shift/shift.py +16 -12
- endoreg_db/models/administration/shift/shift_type.py +23 -31
- endoreg_db/models/label/__init__.py +7 -8
- endoreg_db/models/label/annotation/image_classification.py +10 -9
- endoreg_db/models/label/annotation/video_segmentation_annotation.py +8 -5
- endoreg_db/models/label/label.py +15 -15
- endoreg_db/models/label/label_set.py +19 -6
- endoreg_db/models/label/label_type.py +1 -1
- endoreg_db/models/label/label_video_segment/_create_from_video.py +5 -8
- endoreg_db/models/label/label_video_segment/label_video_segment.py +76 -102
- endoreg_db/models/label/video_segmentation_label.py +4 -0
- endoreg_db/models/label/video_segmentation_labelset.py +4 -3
- endoreg_db/models/media/frame/frame.py +22 -22
- endoreg_db/models/media/pdf/raw_pdf.py +249 -177
- endoreg_db/models/media/pdf/report_file.py +25 -29
- endoreg_db/models/media/pdf/report_reader/report_reader_config.py +30 -46
- endoreg_db/models/media/pdf/report_reader/report_reader_flag.py +23 -7
- endoreg_db/models/media/video/__init__.py +1 -0
- endoreg_db/models/media/video/create_from_file.py +48 -56
- endoreg_db/models/media/video/pipe_1.py +30 -33
- endoreg_db/models/media/video/pipe_2.py +8 -9
- endoreg_db/models/media/video/video_file.py +359 -204
- endoreg_db/models/media/video/video_file_ai.py +288 -74
- endoreg_db/models/media/video/video_file_anonymize.py +38 -38
- endoreg_db/models/media/video/video_file_frames/__init__.py +3 -1
- endoreg_db/models/media/video/video_file_frames/_bulk_create_frames.py +6 -8
- endoreg_db/models/media/video/video_file_frames/_create_frame_object.py +7 -9
- endoreg_db/models/media/video/video_file_frames/_delete_frames.py +9 -8
- endoreg_db/models/media/video/video_file_frames/_extract_frames.py +38 -45
- endoreg_db/models/media/video/video_file_frames/_get_frame.py +6 -8
- endoreg_db/models/media/video/video_file_frames/_get_frame_number.py +4 -18
- endoreg_db/models/media/video/video_file_frames/_get_frame_path.py +4 -3
- endoreg_db/models/media/video/video_file_frames/_get_frame_paths.py +7 -6
- endoreg_db/models/media/video/video_file_frames/_get_frame_range.py +6 -8
- endoreg_db/models/media/video/video_file_frames/_get_frames.py +6 -8
- endoreg_db/models/media/video/video_file_frames/_initialize_frames.py +15 -25
- endoreg_db/models/media/video/video_file_frames/_manage_frame_range.py +26 -23
- endoreg_db/models/media/video/video_file_frames/_mark_frames_extracted_status.py +23 -14
- endoreg_db/models/media/video/video_file_io.py +109 -62
- endoreg_db/models/media/video/video_file_meta/get_crop_template.py +3 -3
- endoreg_db/models/media/video/video_file_meta/get_endo_roi.py +5 -3
- endoreg_db/models/media/video/video_file_meta/get_fps.py +37 -34
- endoreg_db/models/media/video/video_file_meta/initialize_video_specs.py +19 -25
- endoreg_db/models/media/video/video_file_meta/text_meta.py +41 -38
- endoreg_db/models/media/video/video_file_meta/video_meta.py +14 -7
- endoreg_db/models/media/video/video_file_segments.py +24 -17
- endoreg_db/models/media/video/video_metadata.py +19 -35
- endoreg_db/models/media/video/video_processing.py +96 -95
- endoreg_db/models/medical/contraindication/__init__.py +13 -3
- endoreg_db/models/medical/disease.py +22 -16
- endoreg_db/models/medical/event.py +31 -18
- endoreg_db/models/medical/examination/__init__.py +13 -6
- endoreg_db/models/medical/examination/examination.py +17 -18
- endoreg_db/models/medical/examination/examination_indication.py +26 -25
- endoreg_db/models/medical/examination/examination_time.py +16 -6
- endoreg_db/models/medical/examination/examination_time_type.py +9 -6
- endoreg_db/models/medical/examination/examination_type.py +3 -4
- endoreg_db/models/medical/finding/finding.py +38 -39
- endoreg_db/models/medical/finding/finding_classification.py +37 -48
- endoreg_db/models/medical/finding/finding_intervention.py +27 -22
- endoreg_db/models/medical/finding/finding_type.py +13 -12
- endoreg_db/models/medical/hardware/endoscope.py +20 -26
- endoreg_db/models/medical/hardware/endoscopy_processor.py +2 -2
- endoreg_db/models/medical/laboratory/lab_value.py +62 -91
- endoreg_db/models/medical/medication/medication.py +22 -10
- endoreg_db/models/medical/medication/medication_indication.py +29 -3
- endoreg_db/models/medical/medication/medication_indication_type.py +25 -14
- endoreg_db/models/medical/medication/medication_intake_time.py +31 -19
- endoreg_db/models/medical/medication/medication_schedule.py +27 -16
- endoreg_db/models/medical/organ/__init__.py +15 -12
- endoreg_db/models/medical/patient/medication_examples.py +1 -5
- endoreg_db/models/medical/patient/patient_disease.py +20 -23
- endoreg_db/models/medical/patient/patient_event.py +19 -22
- endoreg_db/models/medical/patient/patient_examination.py +48 -54
- endoreg_db/models/medical/patient/patient_examination_indication.py +16 -14
- endoreg_db/models/medical/patient/patient_finding.py +122 -139
- endoreg_db/models/medical/patient/patient_finding_classification.py +44 -49
- endoreg_db/models/medical/patient/patient_finding_intervention.py +8 -19
- endoreg_db/models/medical/patient/patient_lab_sample.py +28 -23
- endoreg_db/models/medical/patient/patient_lab_value.py +82 -89
- endoreg_db/models/medical/patient/patient_medication.py +27 -38
- endoreg_db/models/medical/patient/patient_medication_schedule.py +28 -36
- endoreg_db/models/medical/risk/risk.py +7 -6
- endoreg_db/models/medical/risk/risk_type.py +8 -5
- endoreg_db/models/metadata/model_meta.py +60 -29
- endoreg_db/models/metadata/model_meta_logic.py +139 -18
- endoreg_db/models/metadata/pdf_meta.py +19 -24
- endoreg_db/models/metadata/sensitive_meta.py +102 -85
- endoreg_db/models/metadata/sensitive_meta_logic.py +383 -43
- endoreg_db/models/metadata/video_meta.py +51 -31
- endoreg_db/models/metadata/video_prediction_logic.py +16 -23
- endoreg_db/models/metadata/video_prediction_meta.py +29 -33
- endoreg_db/models/other/distribution/date_value_distribution.py +89 -29
- endoreg_db/models/other/distribution/multiple_categorical_value_distribution.py +21 -5
- endoreg_db/models/other/distribution/numeric_value_distribution.py +114 -53
- endoreg_db/models/other/distribution/single_categorical_value_distribution.py +4 -3
- endoreg_db/models/other/emission/emission_factor.py +18 -8
- endoreg_db/models/other/gender.py +10 -5
- endoreg_db/models/other/information_source.py +25 -25
- endoreg_db/models/other/material.py +9 -5
- endoreg_db/models/other/resource.py +6 -4
- endoreg_db/models/other/tag.py +10 -5
- endoreg_db/models/other/transport_route.py +13 -8
- endoreg_db/models/other/unit.py +10 -6
- endoreg_db/models/other/waste.py +6 -5
- endoreg_db/models/requirement/requirement.py +580 -272
- endoreg_db/models/requirement/requirement_error.py +85 -0
- endoreg_db/models/requirement/requirement_evaluation/evaluate_with_dependencies.py +268 -0
- endoreg_db/models/requirement/requirement_evaluation/operator_evaluation_models.py +3 -6
- endoreg_db/models/requirement/requirement_evaluation/requirement_type_parser.py +90 -64
- endoreg_db/models/requirement/requirement_operator.py +36 -33
- endoreg_db/models/requirement/requirement_set.py +74 -57
- endoreg_db/models/state/__init__.py +4 -4
- endoreg_db/models/state/abstract.py +2 -2
- endoreg_db/models/state/anonymization.py +12 -0
- endoreg_db/models/state/audit_ledger.py +46 -47
- endoreg_db/models/state/label_video_segment.py +9 -0
- endoreg_db/models/state/raw_pdf.py +40 -46
- endoreg_db/models/state/sensitive_meta.py +6 -2
- endoreg_db/models/state/video.py +58 -53
- endoreg_db/models/upload_job.py +32 -55
- endoreg_db/models/utils.py +1 -2
- endoreg_db/root_urls.py +21 -2
- endoreg_db/serializers/__init__.py +26 -57
- endoreg_db/serializers/anonymization.py +18 -10
- endoreg_db/serializers/meta/report_meta.py +1 -1
- endoreg_db/serializers/meta/sensitive_meta_detail.py +63 -118
- endoreg_db/serializers/misc/__init__.py +1 -1
- endoreg_db/serializers/misc/file_overview.py +33 -91
- endoreg_db/serializers/misc/{vop_patient_data.py → sensitive_patient_data.py} +1 -1
- endoreg_db/serializers/requirements/requirement_sets.py +92 -22
- endoreg_db/serializers/video/segmentation.py +2 -1
- endoreg_db/serializers/video/video_processing_history.py +20 -5
- endoreg_db/serializers/video_examination.py +198 -0
- endoreg_db/services/anonymization.py +75 -73
- endoreg_db/services/lookup_service.py +256 -73
- endoreg_db/services/lookup_store.py +174 -30
- endoreg_db/services/pdf_import.py +711 -310
- endoreg_db/services/storage_aware_video_processor.py +140 -114
- endoreg_db/services/video_import.py +266 -117
- endoreg_db/urls/__init__.py +27 -27
- endoreg_db/urls/label_video_segments.py +2 -0
- endoreg_db/urls/media.py +108 -66
- endoreg_db/urls/root_urls.py +29 -0
- endoreg_db/utils/__init__.py +15 -5
- endoreg_db/utils/ai/multilabel_classification_net.py +116 -20
- endoreg_db/utils/case_generator/__init__.py +3 -0
- endoreg_db/utils/dataloader.py +88 -16
- endoreg_db/utils/defaults/set_default_center.py +32 -0
- endoreg_db/utils/names.py +22 -16
- endoreg_db/utils/permissions.py +2 -1
- endoreg_db/utils/pipelines/process_video_dir.py +1 -1
- endoreg_db/utils/requirement_operator_logic/model_evaluators.py +414 -127
- endoreg_db/utils/setup_config.py +8 -5
- endoreg_db/utils/storage.py +115 -0
- endoreg_db/utils/validate_endo_roi.py +8 -2
- endoreg_db/utils/video/ffmpeg_wrapper.py +184 -188
- endoreg_db/views/__init__.py +5 -12
- endoreg_db/views/anonymization/media_management.py +198 -163
- endoreg_db/views/anonymization/overview.py +4 -1
- endoreg_db/views/anonymization/validate.py +174 -40
- endoreg_db/views/media/__init__.py +2 -0
- endoreg_db/views/media/pdf_media.py +131 -150
- endoreg_db/views/media/sensitive_metadata.py +46 -6
- endoreg_db/views/media/video_media.py +89 -82
- endoreg_db/views/media/video_segments.py +187 -260
- endoreg_db/views/meta/sensitive_meta_detail.py +0 -63
- endoreg_db/views/patient/patient.py +5 -4
- endoreg_db/views/pdf/__init__.py +5 -8
- endoreg_db/views/pdf/pdf_stream.py +186 -0
- endoreg_db/views/pdf/pdf_stream_views.py +0 -127
- endoreg_db/views/pdf/reimport.py +86 -91
- endoreg_db/views/requirement/evaluate.py +188 -187
- endoreg_db/views/requirement/lookup.py +186 -288
- endoreg_db/views/requirement/requirement_utils.py +89 -0
- endoreg_db/views/video/__init__.py +0 -4
- endoreg_db/views/video/correction.py +2 -2
- endoreg_db/views/video/video_examination_viewset.py +202 -289
- {endoreg_db-0.8.4.4.dist-info → endoreg_db-0.8.8.0.dist-info}/METADATA +7 -3
- {endoreg_db-0.8.4.4.dist-info → endoreg_db-0.8.8.0.dist-info}/RECORD +350 -255
- endoreg_db/models/administration/permissions/__init__.py +0 -44
- endoreg_db/models/media/video/refactor_plan.md +0 -0
- endoreg_db/models/media/video/video_file_frames.py +0 -0
- endoreg_db/models/metadata/frame_ocr_result.py +0 -0
- endoreg_db/models/rule/__init__.py +0 -13
- endoreg_db/models/rule/rule.py +0 -27
- endoreg_db/models/rule/rule_applicator.py +0 -224
- endoreg_db/models/rule/rule_attribute_dtype.py +0 -17
- endoreg_db/models/rule/rule_type.py +0 -20
- endoreg_db/models/rule/ruleset.py +0 -17
- endoreg_db/serializers/video/video_metadata.py +0 -105
- endoreg_db/urls/report.py +0 -48
- endoreg_db/urls/video.py +0 -61
- endoreg_db/utils/case_generator/case_generator.py +0 -159
- endoreg_db/utils/case_generator/utils.py +0 -30
- endoreg_db/views/pdf/pdf_media.py +0 -239
- endoreg_db/views/report/__init__.py +0 -9
- endoreg_db/views/report/report_list.py +0 -112
- endoreg_db/views/report/report_with_secure_url.py +0 -28
- endoreg_db/views/report/start_examination.py +0 -7
- endoreg_db/views/video/video_media.py +0 -158
- endoreg_db/views.py +0 -0
- /endoreg_db/data/{requirement_set → _examples/requirement_set}/endoscopy_bleeding_risk.yaml +0 -0
- /endoreg_db/migrations/{0002_add_video_correction_models.py → _old/0002_add_video_correction_models.py} +0 -0
- /endoreg_db/migrations/{0003_add_center_display_name.py → _old/0003_add_center_display_name.py} +0 -0
- {endoreg_db-0.8.4.4.dist-info → endoreg_db-0.8.8.0.dist-info}/WHEEL +0 -0
- {endoreg_db-0.8.4.4.dist-info → endoreg_db-0.8.8.0.dist-info}/licenses/LICENSE +0 -0
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from endoreg_db.models.requirement.requirement import Requirement
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from endoreg_db.views.requirement.requirement_utils import safe_evaluate_requirement
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from endoreg_db.models.requirement.requirement_set import RequirementSet
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from endoreg_db.models.requirement.requirement_evaluation.evaluate_with_dependencies import (
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evaluate_requirement_sets_with_dependencies,
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RequirementStatus, # if you export it there, otherwise re-declare in view
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)
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from endoreg_db.models.medical.patient.patient_examination import PatientExamination
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from rest_framework import status
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from rest_framework.decorators import api_view
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from rest_framework.response import Response
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import json
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import logging
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logger = logging.getLogger(__name__)
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@api_view(["POST"])
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def evaluate_requirements(request):
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"""
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Evaluate requirements and always return 200 with structured results.
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Payload:
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{
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"requirement_set_ids": [<int>, ...], // optional; evaluates all if omitted
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"patient_examination_id": <int> // required
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}
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Response (HTTP 200 always):
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{
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"ok": <bool>, // false if any errors occurred
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"errors": [<str>, ...], // high-level problems (e.g. invalid input, missing PE)
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"meta": {
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"patientExaminationId": <int|null>,
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"setsEvaluated": <int>,
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"requirementsEvaluated": <int>,
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"status": "ok" | "partial" | "failed"
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},
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"results": [
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{
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"requirement_set_id": <int>,
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"requirement_set_name": <str>,
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"requirement_name": <str>,
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"met": <bool>,
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"details": <str>, // always a string for UI display
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"error": <str|null> // per-item error if evaluation failed
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}
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]
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}
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Evaluate requirements (all selected sets) and always return 200 with structured results.
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"""
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payload = request.data or {}
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req_set_ids = payload.get("requirement_set_ids")
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pe_id = payload.get("patient_examination_id")
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results = []
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errors = []
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results: list[dict] = []
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errors: list[str] = []
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sets_evaluated = 0
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requirements_evaluated = 0
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msg = "patient_examination_id is required"
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errors.append(msg)
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logger.warning("evaluate_requirements: %s; payload=%s", msg, payload)
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return Response(
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return Response(
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{
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"ok": False,
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"errors": errors,
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"meta": {
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"patientExaminationId": None,
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"setsEvaluated": 0,
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"requirementsEvaluated": 0,
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"status": "failed",
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},
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"results": [],
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},
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status=status.HTTP_200_OK,
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)
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# ---- fetch PatientExamination
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try:
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pe = (
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pe = (
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PatientExamination.objects.select_related("patient")
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.get(id=pe_id)
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)
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except PatientExamination.DoesNotExist:
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msg = f"PatientExamination with id {pe_id} does not exist"
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errors.append(msg)
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logger.warning("evaluate_requirements: %s", msg)
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return Response(
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return Response(
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{
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"ok": False,
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"errors": errors,
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"meta": {
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"patientExaminationId": pe_id,
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"setsEvaluated": 0,
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"requirementsEvaluated": 0,
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"status": "failed",
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},
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"results": [],
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status=status.HTTP_200_OK,
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)
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except Exception as e:
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msg = f"Unexpected error retrieving PatientExamination {pe_id}: {e}"
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errors.append(msg)
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logger.exception("evaluate_requirements: %s", msg)
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return Response(
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return Response(
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{
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"ok": False,
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"errors": errors,
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"meta": {
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"patientExaminationId": pe_id,
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"setsEvaluated": 0,
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"requirementsEvaluated": 0,
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"status": "failed",
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"results": [],
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status=status.HTTP_200_OK,
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)
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# ---- determine requirement sets
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try:
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msg = f"Error loading RequirementSets: {e}"
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errors.append(msg)
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logger.exception("evaluate_requirements: %s", msg)
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return Response(
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return Response(
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{
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"ok": False,
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"errors": errors,
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"meta": {
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"patientExaminationId": pe_id,
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"setsEvaluated": 0,
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"requirementsEvaluated": 0,
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"status": "failed",
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"results": [],
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status=status.HTTP_200_OK,
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)
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# nothing to evaluate → still return 200
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if not requirement_sets:
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response_payload = {
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"ok": len(errors) == 0,
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"errors": errors,
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"meta": {
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"patientExaminationId": pe_id,
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"setsEvaluated": 0,
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"requirementsEvaluated": 0,
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"status": "failed",
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"status": "failed" if errors else "ok",
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"results": []
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}
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"results": [],
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}
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return Response(response_payload, status=status.HTTP_200_OK)
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# mapping from IDs to objects for later lookup
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sets_by_id: dict[int, RequirementSet] = {s.id: s for s in requirement_sets}
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# ---- main evaluation with set dependencies
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try:
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# returns: { set_id: { req_id: (status, details) } }
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set_results = evaluate_requirement_sets_with_dependencies(
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requirement_sets,
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pe.patient,
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mode="strict",
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)
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for set_id, req_dict in set_results.items():
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req_set = sets_by_id.get(set_id)
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set_name = getattr(
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req_set, "name", str(set_id)
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) if req_set is not None else str(set_id)
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# fall back to the prefetched instance
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requirement_obj = req
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for req_id, (status_value, details) in req_dict.items():
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try:
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requirement_obj = Requirement.objects.get(id=req_id)
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req_name = getattr(requirement_obj, "name", f"#{req_id}")
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except Requirement.DoesNotExist:
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requirement_obj = None
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req_name = f"#{req_id}"
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# map RequirementStatus → met + error
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if status_value == "PASSED":
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met = True
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error_str = None
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elif status_value in ("FAILED", "BLOCKED"):
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met = False
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error_str = None
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else: # "ERROR"
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met = False
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error_str = "Technischer Fehler bei der Auswertung"
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# normalize details to string
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if isinstance(details, str):
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details_str = details
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details_str = json.dumps(
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details_str = json.dumps(
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details, ensure_ascii=False, default=str
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except Exception:
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details_str = str(details)
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# default fallback text if details are empty
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if not details_str:
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details_str = (
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if met
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else "Voraussetzung nicht erfüllt"
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if status_value == "ERROR":
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# add a high-level error for meta if there was an internal error
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msg = (
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f"Technischer Fehler bei der Auswertung von "
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|
202
|
+
f"Voraussetzung '{req_name}' in Set '{set_name}'."
|
|
203
|
+
)
|
|
204
|
+
errors.append(msg)
|
|
205
|
+
|
|
206
|
+
results.append(
|
|
207
|
+
{
|
|
208
|
+
"requirement_set_id": set_id,
|
|
209
|
+
"requirement_set_name": set_name,
|
|
210
|
+
"requirement_name": req_name,
|
|
211
|
+
"met": bool(met),
|
|
212
|
+
"details": details_str,
|
|
213
|
+
"error": error_str,
|
|
214
|
+
"status": status_value,
|
|
215
|
+
}
|
|
216
|
+
)
|
|
217
|
+
requirements_evaluated += 1
|
|
218
|
+
|
|
219
|
+
except Exception as e:
|
|
220
|
+
# hard failure of the orchestrator → log and fall back to per-requirement evaluation
|
|
221
|
+
msg = f"Unerwarteter Fehler bei der gruppenbasierten Bewertung: {e}"
|
|
222
|
+
errors.append(msg)
|
|
223
|
+
logger.exception("evaluate_requirements: %s", msg)
|
|
224
|
+
|
|
225
|
+
for req_set in requirement_sets:
|
|
226
|
+
for req in req_set.requirements.all():
|
|
227
|
+
met, details, error = safe_evaluate_requirement(
|
|
228
|
+
req, pe.patient, mode="strict"
|
|
229
|
+
)
|
|
230
|
+
# normalize details to string
|
|
231
|
+
if not isinstance(details, str):
|
|
232
|
+
try:
|
|
233
|
+
details = json.dumps(details, ensure_ascii=False, default=str)
|
|
234
|
+
except Exception:
|
|
235
|
+
details = str(details)
|
|
236
|
+
|
|
237
|
+
if not details:
|
|
238
|
+
details = (
|
|
239
|
+
"Voraussetzung erfüllt"
|
|
240
|
+
if met
|
|
241
|
+
else "Voraussetzung nicht erfüllt"
|
|
242
|
+
)
|
|
190
243
|
|
|
191
|
-
|
|
244
|
+
results.append(
|
|
245
|
+
{
|
|
246
|
+
"requirement_set_id": req_set.id,
|
|
247
|
+
"requirement_set_name": getattr(
|
|
248
|
+
req_set, "name", str(req_set.id)
|
|
249
|
+
),
|
|
250
|
+
"requirement_name": getattr(req, "name", "unknown"),
|
|
251
|
+
"met": bool(met),
|
|
252
|
+
"details": details,
|
|
253
|
+
"error": error,
|
|
254
|
+
"status": "PASSED" if met else "FAILED",
|
|
255
|
+
}
|
|
256
|
+
)
|
|
257
|
+
requirements_evaluated += 1
|
|
192
258
|
|
|
193
259
|
# ---- response meta & status summary
|
|
194
260
|
any_errors = len(errors) > 0
|
|
@@ -201,79 +267,14 @@ def evaluate_requirements(request):
|
|
|
201
267
|
|
|
202
268
|
response_payload = {
|
|
203
269
|
"ok": not any_errors,
|
|
204
|
-
"errors": errors,
|
|
270
|
+
"errors": errors,
|
|
205
271
|
"meta": {
|
|
206
272
|
"patientExaminationId": pe_id,
|
|
207
273
|
"setsEvaluated": sets_evaluated,
|
|
208
274
|
"requirementsEvaluated": requirements_evaluated,
|
|
209
|
-
"status": status_label
|
|
275
|
+
"status": status_label,
|
|
210
276
|
},
|
|
211
|
-
"results": results
|
|
277
|
+
"results": results,
|
|
212
278
|
}
|
|
213
279
|
|
|
214
280
|
return Response(response_payload, status=status.HTTP_200_OK)
|
|
215
|
-
|
|
216
|
-
|
|
217
|
-
def evaluate_requirement_set(request) -> Response:
|
|
218
|
-
"""
|
|
219
|
-
Evaluate a specific RequirementSet based on provided RequirementLinks data.
|
|
220
|
-
|
|
221
|
-
Expects a JSON payload with the following structure:
|
|
222
|
-
{
|
|
223
|
-
"requirement_set_ids": [<requirement_set_ids>],
|
|
224
|
-
"patient_examination_id": <patient_examination_id>
|
|
225
|
-
}
|
|
226
|
-
|
|
227
|
-
Returns a JSON response with the evaluation results for the specified RequirementSet:
|
|
228
|
-
{
|
|
229
|
-
"results": [
|
|
230
|
-
{
|
|
231
|
-
"requirement_name": <requirement_name>,
|
|
232
|
-
"met": <true/false>,
|
|
233
|
-
"details": <additional_details>
|
|
234
|
-
},
|
|
235
|
-
...
|
|
236
|
-
]
|
|
237
|
-
}
|
|
238
|
-
"""
|
|
239
|
-
try:
|
|
240
|
-
data = request.data
|
|
241
|
-
requirement_set_ids = data.get("requirement_set_ids", None)
|
|
242
|
-
patient_examination_id = data.get("patient_examination_id")
|
|
243
|
-
|
|
244
|
-
if not requirement_set_ids:
|
|
245
|
-
return Response({"error": "requirement_set_ids is required"}, status=status.HTTP_400_BAD_REQUEST)
|
|
246
|
-
|
|
247
|
-
if not patient_examination_id:
|
|
248
|
-
return Response({"error": "patient_examination_id is required"}, status=status.HTTP_400_BAD_REQUEST)
|
|
249
|
-
|
|
250
|
-
# Get the patient examination
|
|
251
|
-
try:
|
|
252
|
-
patient_examination = PatientExamination.objects.get(id=patient_examination_id)
|
|
253
|
-
except PatientExamination.DoesNotExist:
|
|
254
|
-
return Response({"error": f"PatientExamination with id {patient_examination_id} does not exist"}, status=status.HTTP_404_NOT_FOUND)
|
|
255
|
-
|
|
256
|
-
results = []
|
|
257
|
-
|
|
258
|
-
# Construct RequirementLinks from the provided data
|
|
259
|
-
for requirement_set_id in requirement_set_ids:
|
|
260
|
-
# Fetch the specified RequirementSet
|
|
261
|
-
try:
|
|
262
|
-
req_set = RequirementSet.objects.get(id=requirement_set_id)
|
|
263
|
-
except RequirementSet.DoesNotExist:
|
|
264
|
-
return Response({"error": f"RequirementSet with id {requirement_set_id} does not exist"}, status=status.HTTP_404_NOT_FOUND)
|
|
265
|
-
|
|
266
|
-
for requirement in req_set.requirements.all():
|
|
267
|
-
met, details = requirement.evaluate(patient_examination.patient, mode="strict")
|
|
268
|
-
results.append({
|
|
269
|
-
"requirement_name": requirement.name,
|
|
270
|
-
"met": met,
|
|
271
|
-
"details": details
|
|
272
|
-
})
|
|
273
|
-
|
|
274
|
-
return Response({
|
|
275
|
-
"results": results
|
|
276
|
-
}, status=status.HTTP_200_OK)
|
|
277
|
-
|
|
278
|
-
except Exception as e:
|
|
279
|
-
return Response({"results": str(e), details: "Fehler bei der Bewertung der Voraussetzung"}, status=status.HTTP_400_BAD_REQUEST)
|