endoreg-db 0.8.4.4__py3-none-any.whl → 0.8.8.0__py3-none-any.whl

endoreg_db/views/__init__.py

@@ -108,16 +108,9 @@ from .patient_finding_classification import (
 )
 
 from .pdf import (
-    ClosingFileWrapper,
-    PDFMediaView,
+    PdfReimportView,
+    PdfStreamView,
 )
-
-from .report import (
-    ReportListView,
-    ReportWithSecureUrlView,
-    start_examination,
-)
-
 from .requirement import (
     evaluate_requirements,
     LookupViewSet,
@@ -125,7 +118,6 @@ from .requirement import (
 
 from .video import (
     # Video Correction (Phase 1.1) - Implemented
-    VideoMetadataView,
     VideoProcessingHistoryView,
     VideoApplyMaskView,
     VideoRemoveFramesView,
@@ -137,7 +129,6 @@ from .video import (
     VideoLabelView,
     UpdateLabelSegmentsView,
     rerun_segmentation,
-    video_timeline_view,
     VideoExaminationViewSet,
     VideoCorrectionView,
 )
@@ -240,7 +231,9 @@ __all__ = [
     "create_patient_finding_classification",
 
     # PDF
-    "ClosingFileWrapper",
+    "PdfMediaView",
+    "PdfReimportView",
+    "PdfStreamView",
 
     # Report
     "ReportListView",

endoreg_db/views/anonymization/media_management.py

@@ -1,18 +1,19 @@
 # endoreg_db/views/media_management.py
 
 import logging
-from typing import Dict, Any
+from datetime import timedelta
+from typing import Any, Dict
+
 from django.db import transaction
 from django.db.models import Q
+from django.utils import timezone
 from numpy import delete
 from rest_framework import status
 from rest_framework.decorators import api_view, permission_classes
 from rest_framework.response import Response
 from rest_framework.views import APIView
-from django.utils import timezone
-from datetime import timedelta
 
-from endoreg_db.models import VideoFile, RawPdfFile, VideoState
+from endoreg_db.models import RawPdfFile, VideoFile, VideoState
 from endoreg_db.utils.permissions import DEBUG_PERMISSIONS
 
 logger = logging.getLogger(__name__)
@@ -21,10 +22,12 @@ logger = logging.getLogger(__name__)
 # Media Cleanup and Management API
 # ---------------------------------------------------------------------------
 
+
 class MediaManagementView(APIView):
     """
     Comprehensive Media Management API for cleanup and maintenance operations
     """
+
     permission_classes = DEBUG_PERMISSIONS
 
     def get(self, request):
@@ -38,8 +41,8 @@ class MediaManagementView(APIView):
         except Exception as e:
             logger.error(f"Error getting media status overview: {e}")
             return Response(
-                {"error": "Failed to get status overview"}, 
-                status=status.HTTP_500_INTERNAL_SERVER_ERROR
+                {"error": "Failed to get status overview"},
+                status=status.HTTP_500_INTERNAL_SERVER_ERROR,
             )
 
     def delete(self, request):
@@ -47,10 +50,10 @@ class MediaManagementView(APIView):
         DELETE /api/media-management/cleanup/
         Cleanup unfinished, failed, or stale media processing entries
         """
-        cleanup_type = request.query_params.get('type', 'unfinished')
-        force = request.query_params.get('force', 'false').lower() == 'true'
-        media_type = request.query_params.get('file_type', 'all')
-        file_id = request.query_params.get('file_id', None)
+        cleanup_type = request.query_params.get("type", "unfinished")
+        force = request.query_params.get("force", "false").lower() == "true"
+        media_type = request.query_params.get("file_type", "all")
+        file_id = request.query_params.get("file_id", None)
 
         try:
             result = self._perform_cleanup(cleanup_type, force, media_type, file_id)
@@ -59,40 +62,40 @@ class MediaManagementView(APIView):
         except Exception as e:
             logger.error(f"Error during media cleanup: {e}")
             return Response(
-                {"error": "Cleanup operation failed"}, 
-                status=status.HTTP_500_INTERNAL_SERVER_ERROR
+                {"error": "Cleanup operation failed"},
+                status=status.HTTP_500_INTERNAL_SERVER_ERROR,
             )
 
     def _get_status_overview(self) -> Dict[str, Any]:
         """Get comprehensive status overview"""
         video_stats = self._get_video_stats()
         pdf_stats = self._get_pdf_stats()
-        
+
         # Stale processing detection (older than 2 hours)
         stale_threshold = timezone.now() - timedelta(hours=2)
         # Use VideoState boolean fields instead of non-existent name field
         stale_videos = VideoFile.objects.filter(
             uploaded_at__lt=stale_threshold,
             state__frames_extracted=True,
-            state__sensitive_meta_processed=False
+            state__sensitive_meta_processed=False,
         ).count()
-        
+
         return {
             "videos": video_stats,
             "pdfs": pdf_stats,
             "cleanup_opportunities": {
                 "stale_processing": stale_videos,
                 "failed_videos": video_stats["failed"],
-                "unfinished_total": video_stats["unfinished"] + pdf_stats["unfinished"]
+                "unfinished_total": video_stats["unfinished"] + pdf_stats["unfinished"],
             },
             "total_files": video_stats["total"] + pdf_stats["total"],
-            "timestamp": timezone.now().isoformat()
+            "timestamp": timezone.now().isoformat(),
         }
 
     def _get_video_stats(self) -> Dict[str, int]:
         """Get video file statistics using VideoState boolean fields"""
-        videos = VideoFile.objects.select_related('state').all()
-        
+        videos = VideoFile.objects.select_related("state").all()
+
         stats = {
             "total": videos.count(),
             "not_started": 0,
@@ -100,30 +103,33 @@ class MediaManagementView(APIView):
             "done": 0,
             "failed": 0,
             "validated": 0,
-            "unfinished": 0
+            "unfinished": 0,
         }
-        
+
         for video in videos:
             if not video.state:
                 stats["not_started"] += 1
                 stats["unfinished"] += 1
                 continue
-                
+
             # Use the anonymization_status property
             video_status = video.state.anonymization_status
-            
-            if video_status.value == 'not_started':
+
+            if video_status.value == "not_started":
                 stats["not_started"] += 1
                 stats["unfinished"] += 1
-            elif video_status.value in ['extracting_frames', 'processing_anonymization']:
+            elif video_status.value in [
+                "extracting_frames",
+                "processing_anonymization",
+            ]:
                 stats["processing"] += 1
                 stats["unfinished"] += 1
-            elif video_status.value == 'done':
+            elif video_status.value == "done_processing_anonymization":
                 stats["done"] += 1
-            elif video_status.value == 'failed':
+            elif video_status.value == "failed":
                 stats["failed"] += 1
                 stats["unfinished"] += 1
-            elif video_status.value == 'validated':
+            elif video_status.value == "validated":
                 stats["validated"] += 1
             else:
                 stats["unfinished"] += 1
@@ -132,7 +138,7 @@ class MediaManagementView(APIView):
     def _get_pdf_stats(self) -> Dict[str, int]:
         """Get PDF file statistics"""
         pdfs = RawPdfFile.objects.all()
-        
+
         stats = {
             "total": pdfs.count(),
             "not_started": 0,
@@ -140,14 +146,18 @@ class MediaManagementView(APIView):
             "done": 0,
             "failed": 0,
             "validated": 0,
-            "unfinished": 0
+            "unfinished": 0,
         }
-        
+
         for pdf in pdfs:
             # PDF status logic based on anonymized_text presence and validation
             has_anonymized = bool(pdf.anonymized_text and pdf.anonymized_text.strip())
-            is_validated = getattr(pdf.sensitive_meta, 'is_verified', False) if pdf.sensitive_meta else False
-            
+            is_validated = (
+                getattr(pdf.sensitive_meta, "is_verified", False)
+                if pdf.sensitive_meta
+                else False
+            )
+
             if not has_anonymized:
                 stats["not_started"] += 1
                 stats["unfinished"] += 1
@@ -157,22 +167,24 @@ class MediaManagementView(APIView):
                 stats["done"] += 1
             else:
                 stats["unfinished"] += 1
-                
+
         return stats
 
-    def _perform_cleanup(self, cleanup_type: str, force: bool, media_type: str, file_id: int) -> Dict[str, Any]:
+    def _perform_cleanup(
+        self, cleanup_type: str, force: bool, media_type: str, file_id: int
+    ) -> Dict[str, Any]:
         """Perform the actual cleanup operations"""
-        
+
         result = {
             "cleanup_type": cleanup_type,
             "force": force,
             "removed_items": [],
-            "summary": {}
+            "summary": {},
         }
-        
-        if media_type not in ['video', 'pdf', 'all']:
+
+        if media_type not in ["video", "pdf", "all"]:
             raise ValueError(f"Unknown media type: {media_type}")
-        
+
         if file_id is not None:
             try:
                 file_id = int(file_id)
@@ -181,81 +193,91 @@ class MediaManagementView(APIView):
 
         video_file_obj = None
         pdf_file_obj = None
-            
-        if media_type == 'video':
-            video_file_obj = VideoFile.get_video_by_id(self, video_id=file_id) if file_id else None
-        elif media_type == 'pdf':
-            pdf_file_obj = RawPdfFile.get_pdf_by_id(file_id) if file_id else None
 
+        if media_type == "video":
+            video_file_obj = (
+                VideoFile.get_video_by_id(self, video_id=file_id) if file_id else None
+            )
+        elif media_type == "pdf":
+            pdf_file_obj = RawPdfFile.get_pdf_by_id(file_id) if file_id else None
 
         with transaction.atomic():
             if video_file_obj:
                 video_file_obj.delete()
             if pdf_file_obj:
                 pdf_file_obj.delete()
-            
-            if cleanup_type == 'unfinished':
+
+            if cleanup_type == "unfinished":
                 result.update(self._cleanup_unfinished_media(force))
-            elif cleanup_type == 'failed':
+            elif cleanup_type == "failed":
                 result.update(self._cleanup_failed_media(force))
-            elif cleanup_type == 'stale':
+            elif cleanup_type == "stale":
                 result.update(self._cleanup_stale_processing(force))
-            elif cleanup_type == 'all':
+            elif cleanup_type == "all":
                 unfinished = self._cleanup_unfinished_media(force)
                 failed = self._cleanup_failed_media(force)
                 stale = self._cleanup_stale_processing(force)
-                
+
                 result["removed_items"] = (
-                    unfinished.get("removed_items", []) + 
-                    failed.get("removed_items", []) + 
-                    stale.get("removed_items", [])
+                    unfinished.get("removed_items", [])
+                    + failed.get("removed_items", [])
+                    + stale.get("removed_items", [])
                 )
                 result["summary"] = {
                     "unfinished": unfinished.get("summary", {}),
                     "failed": failed.get("summary", {}),
-                    "stale": stale.get("summary", {})
+                    "stale": stale.get("summary", {}),
                 }
             else:
                 raise ValueError(f"Unknown cleanup type: {cleanup_type}")
-                
+
         return result
 
     def _cleanup_unfinished_media(self, force: bool) -> Dict[str, Any]:
         """Remove unfinished media processing entries"""
         removed_videos = []
         removed_pdfs = []
-        
+
         # Find unfinished videos using VideoState boolean fields
-        unfinished_videos = VideoFile.objects.select_related('state').all()
-        
+        unfinished_videos = VideoFile.objects.select_related("state").all()
+
         for video in unfinished_videos:
             if not video.state:
                 if force:  # Only remove videos without state if force=True
-                    removed_videos.append({
-                        "id": video.id,
-                        "type": "video",
-                        "filename": video.original_file_name,
-                        "status": "no_state",
-                        "uploaded_at": video.uploaded_at.isoformat()
-                    })
+                    removed_videos.append(
+                        {
+                            "id": video.id,
+                            "type": "video",
+                            "filename": video.original_file_name,
+                            "status": "no_state",
+                            "uploaded_at": video.uploaded_at.isoformat(),
+                        }
+                    )
                     video.delete()
                 continue
-                
+
             video_status = video.state.anonymization_status
-            is_unfinished = video_status.value in ['not_started', 'extracting_frames', 'processing_anonymization', 'failed']
-            
+            is_unfinished = video_status.value in [
+                "not_started",
+                "extracting_frames",
+                "processing_anonymization",
+                "failed",
+            ]
+
             # Remove unfinished videos
-            if is_unfinished and (force or video_status.value != 'not_started'):
-                removed_videos.append({
-                    "id": video.id,
-                    "type": "video",
-                    "filename": video.original_file_name,
-                    "status": video_status.value,
-                    "uploaded_at": video.uploaded_at.isoformat()
-                })
+            if is_unfinished and (force or video_status.value != "not_started"):
+                removed_videos.append(
+                    {
+                        "id": video.id,
+                        "type": "video",
+                        "filename": video.original_file_name,
+                        "status": video_status.value,
+                        "uploaded_at": video.uploaded_at.isoformat(),
+                    }
+                )
                 if force:
                     video.delete()
-        
+
         # Return the results
         return {
             "removed_items": removed_videos + removed_pdfs,
@@ -263,29 +285,31 @@ class MediaManagementView(APIView):
                 "videos_removed": len(removed_videos),
                 "pdfs_removed": len(removed_pdfs),
                 "total_removed": len(removed_videos) + len(removed_pdfs),
-                "dry_run": not force
-            }
+                "dry_run": not force,
+            },
         }
 
     def _cleanup_failed_media(self, force: bool) -> Dict[str, Any]:
         """Remove failed media processing entries"""
         removed_items = []
-        
+
         # Find failed videos using VideoState boolean fields
-        failed_videos = VideoFile.objects.select_related('state').all()
-        
+        failed_videos = VideoFile.objects.select_related("state").all()
+
         for video in failed_videos:
-            if video.state and video.state.anonymization_status.value == 'failed':
-                removed_items.append({
-                    "id": video.id,
-                    "type": "video",
-                    "filename": video.original_file_name,
-                    "status": "failed",
-                    "uploaded_at": video.uploaded_at.isoformat()
-                })
+            if video.state and video.state.anonymization_status.value == "failed":
+                removed_items.append(
+                    {
+                        "id": video.id,
+                        "type": "video",
+                        "filename": video.original_file_name,
+                        "status": "failed",
+                        "uploaded_at": video.uploaded_at.isoformat(),
+                    }
+                )
                 if force:
                     video.delete()
-            
+
         if force:
             # Count actual deletions
             videos_deleted = len([v for v in removed_items if v["type"] == "video"])
@@ -294,8 +318,8 @@ class MediaManagementView(APIView):
                 "summary": {
                     "videos_removed": videos_deleted,
                     "total_removed": videos_deleted,
-                    "dry_run": False
-                }
+                    "dry_run": False,
+                },
             }
         else:
             return {
@@ -303,33 +327,40 @@ class MediaManagementView(APIView):
                 "summary": {
                     "videos_removed": len(removed_items),
                     "total_removed": len(removed_items),
-                    "dry_run": True
-                }
+                    "dry_run": True,
+                },
             }
 
     def _cleanup_stale_processing(self, force: bool) -> Dict[str, Any]:
         """Remove stale processing entries (older than 2 hours)"""
         stale_threshold = timezone.now() - timedelta(hours=2)
         removed_items = []
-        
+
         # Find stale videos using VideoState boolean fields
         stale_videos = VideoFile.objects.filter(
             uploaded_at__lt=stale_threshold,
             state__frames_extracted=True,
-            state__sensitive_meta_processed=False
-        ).select_related('state')
-        
+            state__sensitive_meta_processed=False,
+        ).select_related("state")
+
         for video in stale_videos:
-            video_status = video.state.anonymization_status if video.state else "no_state"
-            removed_items.append({
-                "id": video.id,
-                "type": "video",
-                "filename": video.original_file_name,
-                "status": f"stale_{video_status.value if hasattr(video_status, 'value') else video_status}",
-                "uploaded_at": video.uploaded_at.isoformat(),
-                "stale_duration_hours": (timezone.now() - video.uploaded_at).total_seconds() / 3600
-            })
-            
+            video_status = (
+                video.state.anonymization_status if video.state else "no_state"
+            )
+            removed_items.append(
+                {
+                    "id": video.id,
+                    "type": "video",
+                    "filename": video.original_file_name,
+                    "status": f"stale_{video_status.value if hasattr(video_status, 'value') else video_status}",
+                    "uploaded_at": video.uploaded_at.isoformat(),
+                    "stale_duration_hours": (
+                        timezone.now() - video.uploaded_at
+                    ).total_seconds()
+                    / 3600,
+                }
+            )
+
         if force:
             videos_deleted = stale_videos.delete()[0]
             return {
@@ -337,8 +368,8 @@ class MediaManagementView(APIView):
                 "summary": {
                     "stale_videos_removed": videos_deleted,
                     "total_removed": videos_deleted,
-                    "dry_run": False
-                }
+                    "dry_run": False,
+                },
             }
         else:
             return {
@@ -346,12 +377,12 @@ class MediaManagementView(APIView):
                 "summary": {
                     "stale_videos_removed": len(removed_items),
                     "total_removed": len(removed_items),
-                    "dry_run": True
-                }
+                    "dry_run": True,
+                },
             }
 
 
-@api_view(['DELETE'])
+@api_view(["DELETE"])
 @permission_classes(DEBUG_PERMISSIONS)
 def force_remove_media(request, file_id: int):
     """
@@ -364,43 +395,44 @@ def force_remove_media(request, file_id: int):
             video = VideoFile.objects.get(id=file_id)
             filename = video.original_file_name
             video.delete()
-            
-            return Response({
-                "detail": f"Video file '{filename}' (ID: {file_id}) removed successfully",
-                "file_type": "video",
-                "file_id": file_id
-            })
+
+            return Response(
+                {
+                    "detail": f"Video file '{filename}' (ID: {file_id}) removed successfully",
+                    "file_type": "video",
+                    "file_id": file_id,
+                }
+            )
         except VideoFile.DoesNotExist:
             pass
-            
+
         # Try to find and delete from RawPdfFile
         try:
             pdf = RawPdfFile.objects.get(id=file_id)
-            filename = getattr(pdf.file, 'name', 'Unknown')
+            filename = getattr(pdf.file, "name", "Unknown")
             pdf.delete()
-            
-            return Response({
-                "detail": f"PDF file '{filename}' (ID: {file_id}) removed successfully",
-                "file_type": "pdf", 
-                "file_id": file_id
-            })
+
+            return Response(
+                {
+                    "detail": f"PDF file '{filename}' (ID: {file_id}) removed successfully",
+                    "file_type": "pdf",
+                    "file_id": file_id,
+                }
+            )
         except RawPdfFile.DoesNotExist:
             pass
-            
-        return Response(
-            {"detail": "File not found"}, 
-            status=status.HTTP_404_NOT_FOUND
-        )
-        
+
+        return Response({"detail": "File not found"}, status=status.HTTP_404_NOT_FOUND)
+
     except Exception as e:
         logger.error(f"Error force removing media {file_id}: {e}")
         return Response(
-            {"error": "Force removal failed"}, 
-            status=status.HTTP_500_INTERNAL_SERVER_ERROR
+            {"error": "Force removal failed"},
+            status=status.HTTP_500_INTERNAL_SERVER_ERROR,
         )
 
 
-@api_view(['POST'])
+@api_view(["POST"])
 @permission_classes(DEBUG_PERMISSIONS)
 def reset_processing_status(request, file_id: int):
     """
@@ -411,44 +443,47 @@ def reset_processing_status(request, file_id: int):
         # Try VideoFile first
         try:
             video = VideoFile.objects.get(id=file_id)
-            
+
             # Reset to 'not_started' state
-            not_started_state, created = VideoState.objects.get_or_create(name='not_started')
+            not_started_state, created = VideoState.objects.get_or_create(
+                name="not_started"
+            )
             video.state = not_started_state
             video.save()
-            
-            return Response({
-                "detail": "Video file status reset to 'not_started'",
-                "file_type": "video",
-                "file_id": file_id,
-                "new_status": "not_started"
-            })
+
+            return Response(
+                {
+                    "detail": "Video file status reset to 'not_started'",
+                    "file_type": "video",
+                    "file_id": file_id,
+                    "new_status": "not_started",
+                }
+            )
         except VideoFile.DoesNotExist:
             pass
-            
+
         # PDF files don't have state, but we can clear anonymized_text
         try:
             pdf = RawPdfFile.objects.get(id=file_id)
             pdf.anonymized_text = ""
             pdf.save()
-            
-            return Response({
-                "detail": "PDF file processing reset",
-                "file_type": "pdf",
-                "file_id": file_id,
-                "new_status": "not_started"
-            })
+
+            return Response(
+                {
+                    "detail": "PDF file processing reset",
+                    "file_type": "pdf",
+                    "file_id": file_id,
+                    "new_status": "not_started",
+                }
+            )
         except RawPdfFile.DoesNotExist:
             pass
-            
-        return Response(
-            {"detail": "File not found"}, 
-            status=status.HTTP_404_NOT_FOUND
-        )
-        
+
+        return Response({"detail": "File not found"}, status=status.HTTP_404_NOT_FOUND)
+
     except Exception as e:
         logger.error(f"Error resetting status for media {file_id}: {e}")
         return Response(
-            {"error": "Status reset failed"}, 
-            status=status.HTTP_500_INTERNAL_SERVER_ERROR
+            {"error": "Status reset failed"},
+            status=status.HTTP_500_INTERNAL_SERVER_ERROR,
         )