endoreg-db 0.8.4.4__py3-none-any.whl → 0.8.8.0__py3-none-any.whl
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- endoreg_db/authz/auth.py +74 -0
- endoreg_db/authz/backends.py +168 -0
- endoreg_db/authz/management/commands/list_routes.py +18 -0
- endoreg_db/authz/middleware.py +83 -0
- endoreg_db/authz/permissions.py +127 -0
- endoreg_db/authz/policy.py +218 -0
- endoreg_db/authz/views_auth.py +66 -0
- endoreg_db/config/env.py +13 -8
- endoreg_db/data/__init__.py +8 -31
- endoreg_db/data/_examples/disease.yaml +55 -0
- endoreg_db/data/_examples/disease_classification.yaml +13 -0
- endoreg_db/data/_examples/disease_classification_choice.yaml +62 -0
- endoreg_db/data/_examples/event.yaml +64 -0
- endoreg_db/data/_examples/examination.yaml +72 -0
- endoreg_db/data/_examples/finding/anatomy_colon.yaml +128 -0
- endoreg_db/data/_examples/finding/colonoscopy.yaml +40 -0
- endoreg_db/data/_examples/finding/colonoscopy_bowel_prep.yaml +56 -0
- endoreg_db/data/_examples/finding/complication.yaml +16 -0
- endoreg_db/data/_examples/finding/data.yaml +105 -0
- endoreg_db/data/_examples/finding/examination_setting.yaml +16 -0
- endoreg_db/data/_examples/finding/medication_related.yaml +18 -0
- endoreg_db/data/_examples/finding/outcome.yaml +12 -0
- endoreg_db/data/_examples/finding_classification/colonoscopy_bowel_preparation.yaml +68 -0
- endoreg_db/data/_examples/finding_classification/colonoscopy_jnet.yaml +22 -0
- endoreg_db/data/_examples/finding_classification/colonoscopy_kudo.yaml +25 -0
- endoreg_db/data/_examples/finding_classification/colonoscopy_lesion_circularity.yaml +20 -0
- endoreg_db/data/_examples/finding_classification/colonoscopy_lesion_planarity.yaml +24 -0
- endoreg_db/data/_examples/finding_classification/colonoscopy_lesion_size.yaml +68 -0
- endoreg_db/data/_examples/finding_classification/colonoscopy_lesion_surface.yaml +20 -0
- endoreg_db/data/_examples/finding_classification/colonoscopy_location.yaml +80 -0
- endoreg_db/data/_examples/finding_classification/colonoscopy_lst.yaml +21 -0
- endoreg_db/data/_examples/finding_classification/colonoscopy_nice.yaml +20 -0
- endoreg_db/data/_examples/finding_classification/colonoscopy_paris.yaml +26 -0
- endoreg_db/data/_examples/finding_classification/colonoscopy_sano.yaml +22 -0
- endoreg_db/data/_examples/finding_classification/colonoscopy_summary.yaml +53 -0
- endoreg_db/data/_examples/finding_classification/complication_generic.yaml +25 -0
- endoreg_db/data/_examples/finding_classification/examination_setting_generic.yaml +40 -0
- endoreg_db/data/_examples/finding_classification/histology_colo.yaml +51 -0
- endoreg_db/data/_examples/finding_classification/intervention_required.yaml +26 -0
- endoreg_db/data/_examples/finding_classification/medication_related.yaml +23 -0
- endoreg_db/data/_examples/finding_classification/visualized.yaml +33 -0
- endoreg_db/data/_examples/finding_classification_choice/bowel_preparation.yaml +78 -0
- endoreg_db/data/_examples/finding_classification_choice/colon_lesion_circularity_default.yaml +32 -0
- endoreg_db/data/_examples/finding_classification_choice/colon_lesion_jnet.yaml +15 -0
- endoreg_db/data/_examples/finding_classification_choice/colon_lesion_kudo.yaml +23 -0
- endoreg_db/data/_examples/finding_classification_choice/colon_lesion_lst.yaml +15 -0
- endoreg_db/data/_examples/finding_classification_choice/colon_lesion_nice.yaml +17 -0
- endoreg_db/data/_examples/finding_classification_choice/colon_lesion_paris.yaml +57 -0
- endoreg_db/data/_examples/finding_classification_choice/colon_lesion_planarity_default.yaml +49 -0
- endoreg_db/data/_examples/finding_classification_choice/colon_lesion_sano.yaml +14 -0
- endoreg_db/data/_examples/finding_classification_choice/colon_lesion_surface_intact_default.yaml +36 -0
- endoreg_db/data/_examples/finding_classification_choice/colonoscopy_location.yaml +229 -0
- endoreg_db/data/_examples/finding_classification_choice/colonoscopy_not_complete_reason.yaml +19 -0
- endoreg_db/data/_examples/finding_classification_choice/colonoscopy_size.yaml +82 -0
- endoreg_db/data/_examples/finding_classification_choice/colonoscopy_summary_worst_finding.yaml +15 -0
- endoreg_db/data/_examples/finding_classification_choice/complication_generic_types.yaml +15 -0
- endoreg_db/data/_examples/finding_classification_choice/examination_setting_generic_types.yaml +15 -0
- endoreg_db/data/_examples/finding_classification_choice/histology.yaml +24 -0
- endoreg_db/data/_examples/finding_classification_choice/histology_polyp.yaml +20 -0
- endoreg_db/data/_examples/finding_classification_choice/outcome.yaml +19 -0
- endoreg_db/data/_examples/finding_classification_choice/yes_no_na.yaml +11 -0
- endoreg_db/data/_examples/finding_classification_type/colonoscopy_basic.yaml +48 -0
- endoreg_db/data/_examples/finding_intervention/endoscopy.yaml +43 -0
- endoreg_db/data/_examples/finding_intervention/endoscopy_colonoscopy.yaml +168 -0
- endoreg_db/data/_examples/finding_intervention/endoscopy_egd.yaml +128 -0
- endoreg_db/data/_examples/finding_intervention/endoscopy_ercp.yaml +32 -0
- endoreg_db/data/_examples/finding_intervention/endoscopy_eus_lower.yaml +9 -0
- endoreg_db/data/_examples/finding_intervention/endoscopy_eus_upper.yaml +36 -0
- endoreg_db/data/_examples/finding_intervention_type/endoscopy.yaml +15 -0
- endoreg_db/data/_examples/finding_type/data.yaml +43 -0
- endoreg_db/data/_examples/requirement/age.yaml +26 -0
- endoreg_db/data/_examples/requirement/colonoscopy_baseline_austria.yaml +45 -0
- endoreg_db/data/_examples/requirement/disease_cardiovascular.yaml +79 -0
- endoreg_db/data/_examples/requirement/disease_classification_choice_cardiovascular.yaml +41 -0
- endoreg_db/data/_examples/requirement/disease_hepatology.yaml +12 -0
- endoreg_db/data/_examples/requirement/disease_misc.yaml +12 -0
- endoreg_db/data/_examples/requirement/disease_renal.yaml +96 -0
- endoreg_db/data/_examples/requirement/endoscopy_bleeding_risk.yaml +59 -0
- endoreg_db/data/_examples/requirement/event_cardiology.yaml +251 -0
- endoreg_db/data/_examples/requirement/event_requirements.yaml +145 -0
- endoreg_db/data/_examples/requirement/finding_colon_polyp.yaml +50 -0
- endoreg_db/data/_examples/requirement/gender.yaml +25 -0
- endoreg_db/data/_examples/requirement/lab_value.yaml +441 -0
- endoreg_db/data/_examples/requirement/medication.yaml +93 -0
- endoreg_db/data/_examples/requirement_operator/age.yaml +13 -0
- endoreg_db/data/_examples/requirement_operator/lab_operators.yaml +129 -0
- endoreg_db/data/_examples/requirement_operator/model_operators.yaml +96 -0
- endoreg_db/data/_examples/requirement_set/01_endoscopy_generic.yaml +48 -0
- endoreg_db/data/_examples/requirement_set/colonoscopy_austria_screening.yaml +57 -0
- endoreg_db/data/_examples/yaml_examples.xlsx +0 -0
- endoreg_db/data/ai_model_meta/default_multilabel_classification.yaml +4 -3
- endoreg_db/data/event_classification/data.yaml +4 -0
- endoreg_db/data/event_classification_choice/data.yaml +9 -0
- endoreg_db/data/finding_classification/colonoscopy_bowel_preparation.yaml +43 -70
- endoreg_db/data/finding_classification/colonoscopy_lesion_size.yaml +22 -52
- endoreg_db/data/finding_classification/colonoscopy_location.yaml +31 -62
- endoreg_db/data/finding_classification/histology_colo.yaml +28 -36
- endoreg_db/data/requirement/colon_polyp_intervention.yaml +49 -0
- endoreg_db/data/requirement/coloreg_colon_polyp.yaml +49 -0
- endoreg_db/data/requirement_set/01_endoscopy_generic.yaml +31 -12
- endoreg_db/data/requirement_set/01_laboratory.yaml +13 -0
- endoreg_db/data/requirement_set/02_endoscopy_bleeding_risk.yaml +46 -0
- endoreg_db/data/requirement_set/90_coloreg.yaml +178 -0
- endoreg_db/data/requirement_set/_old_ +109 -0
- endoreg_db/data/requirement_set_type/data.yaml +21 -0
- endoreg_db/data/setup_config.yaml +4 -4
- endoreg_db/data/tag/requirement_set_tags.yaml +21 -0
- endoreg_db/exceptions.py +5 -2
- endoreg_db/helpers/data_loader.py +1 -1
- endoreg_db/management/commands/create_model_meta_from_huggingface.py +21 -10
- endoreg_db/management/commands/create_multilabel_model_meta.py +299 -129
- endoreg_db/management/commands/import_video.py +9 -10
- endoreg_db/management/commands/import_video_with_classification.py +1 -1
- endoreg_db/management/commands/init_default_ai_model.py +1 -1
- endoreg_db/management/commands/list_routes.py +18 -0
- endoreg_db/management/commands/load_ai_model_data.py +2 -1
- endoreg_db/management/commands/load_center_data.py +12 -12
- endoreg_db/management/commands/load_requirement_data.py +60 -31
- endoreg_db/management/commands/load_requirement_set_tags.py +95 -0
- endoreg_db/management/commands/setup_endoreg_db.py +14 -10
- endoreg_db/management/commands/storage_management.py +271 -203
- endoreg_db/migrations/0001_initial.py +1799 -1300
- endoreg_db/migrations/0002_requirementset_depends_on.py +18 -0
- endoreg_db/migrations/_old/0001_initial.py +1857 -0
- endoreg_db/migrations/_old/0004_employee_city_employee_post_code_employee_street_and_more.py +68 -0
- endoreg_db/migrations/_old/0004_remove_casetemplate_rules_and_more.py +77 -0
- endoreg_db/migrations/_old/0005_merge_20251111_1003.py +14 -0
- endoreg_db/migrations/_old/0006_sensitivemeta_anonymized_text_and_more.py +68 -0
- endoreg_db/migrations/_old/0007_remove_rule_attribute_dtype_remove_rule_rule_type_and_more.py +89 -0
- endoreg_db/migrations/_old/0008_remove_event_event_classification_and_more.py +27 -0
- endoreg_db/migrations/_old/0009_alter_modelmeta_options_and_more.py +21 -0
- endoreg_db/models/__init__.py +78 -123
- endoreg_db/models/administration/__init__.py +21 -42
- endoreg_db/models/administration/ai/active_model.py +2 -2
- endoreg_db/models/administration/ai/ai_model.py +7 -6
- endoreg_db/models/administration/case/__init__.py +1 -15
- endoreg_db/models/administration/case/case.py +3 -3
- endoreg_db/models/administration/case/case_template/__init__.py +2 -14
- endoreg_db/models/administration/case/case_template/case_template.py +2 -124
- endoreg_db/models/administration/case/case_template/case_template_rule.py +2 -268
- endoreg_db/models/administration/case/case_template/case_template_rule_value.py +2 -85
- endoreg_db/models/administration/case/case_template/case_template_type.py +2 -25
- endoreg_db/models/administration/center/center.py +33 -19
- endoreg_db/models/administration/center/center_product.py +12 -9
- endoreg_db/models/administration/center/center_resource.py +25 -19
- endoreg_db/models/administration/center/center_shift.py +21 -17
- endoreg_db/models/administration/center/center_waste.py +16 -8
- endoreg_db/models/administration/person/__init__.py +2 -0
- endoreg_db/models/administration/person/employee/employee.py +10 -5
- endoreg_db/models/administration/person/employee/employee_qualification.py +9 -4
- endoreg_db/models/administration/person/employee/employee_type.py +12 -6
- endoreg_db/models/administration/person/examiner/examiner.py +13 -11
- endoreg_db/models/administration/person/patient/__init__.py +2 -0
- endoreg_db/models/administration/person/patient/patient.py +103 -100
- endoreg_db/models/administration/person/patient/patient_external_id.py +37 -0
- endoreg_db/models/administration/person/person.py +4 -0
- endoreg_db/models/administration/person/profession/__init__.py +8 -4
- endoreg_db/models/administration/person/user/portal_user_information.py +11 -7
- endoreg_db/models/administration/product/product.py +20 -15
- endoreg_db/models/administration/product/product_material.py +17 -18
- endoreg_db/models/administration/product/product_weight.py +12 -8
- endoreg_db/models/administration/product/reference_product.py +23 -55
- endoreg_db/models/administration/qualification/qualification.py +7 -3
- endoreg_db/models/administration/qualification/qualification_type.py +7 -3
- endoreg_db/models/administration/shift/scheduled_days.py +8 -5
- endoreg_db/models/administration/shift/shift.py +16 -12
- endoreg_db/models/administration/shift/shift_type.py +23 -31
- endoreg_db/models/label/__init__.py +7 -8
- endoreg_db/models/label/annotation/image_classification.py +10 -9
- endoreg_db/models/label/annotation/video_segmentation_annotation.py +8 -5
- endoreg_db/models/label/label.py +15 -15
- endoreg_db/models/label/label_set.py +19 -6
- endoreg_db/models/label/label_type.py +1 -1
- endoreg_db/models/label/label_video_segment/_create_from_video.py +5 -8
- endoreg_db/models/label/label_video_segment/label_video_segment.py +76 -102
- endoreg_db/models/label/video_segmentation_label.py +4 -0
- endoreg_db/models/label/video_segmentation_labelset.py +4 -3
- endoreg_db/models/media/frame/frame.py +22 -22
- endoreg_db/models/media/pdf/raw_pdf.py +249 -177
- endoreg_db/models/media/pdf/report_file.py +25 -29
- endoreg_db/models/media/pdf/report_reader/report_reader_config.py +30 -46
- endoreg_db/models/media/pdf/report_reader/report_reader_flag.py +23 -7
- endoreg_db/models/media/video/__init__.py +1 -0
- endoreg_db/models/media/video/create_from_file.py +48 -56
- endoreg_db/models/media/video/pipe_1.py +30 -33
- endoreg_db/models/media/video/pipe_2.py +8 -9
- endoreg_db/models/media/video/video_file.py +359 -204
- endoreg_db/models/media/video/video_file_ai.py +288 -74
- endoreg_db/models/media/video/video_file_anonymize.py +38 -38
- endoreg_db/models/media/video/video_file_frames/__init__.py +3 -1
- endoreg_db/models/media/video/video_file_frames/_bulk_create_frames.py +6 -8
- endoreg_db/models/media/video/video_file_frames/_create_frame_object.py +7 -9
- endoreg_db/models/media/video/video_file_frames/_delete_frames.py +9 -8
- endoreg_db/models/media/video/video_file_frames/_extract_frames.py +38 -45
- endoreg_db/models/media/video/video_file_frames/_get_frame.py +6 -8
- endoreg_db/models/media/video/video_file_frames/_get_frame_number.py +4 -18
- endoreg_db/models/media/video/video_file_frames/_get_frame_path.py +4 -3
- endoreg_db/models/media/video/video_file_frames/_get_frame_paths.py +7 -6
- endoreg_db/models/media/video/video_file_frames/_get_frame_range.py +6 -8
- endoreg_db/models/media/video/video_file_frames/_get_frames.py +6 -8
- endoreg_db/models/media/video/video_file_frames/_initialize_frames.py +15 -25
- endoreg_db/models/media/video/video_file_frames/_manage_frame_range.py +26 -23
- endoreg_db/models/media/video/video_file_frames/_mark_frames_extracted_status.py +23 -14
- endoreg_db/models/media/video/video_file_io.py +109 -62
- endoreg_db/models/media/video/video_file_meta/get_crop_template.py +3 -3
- endoreg_db/models/media/video/video_file_meta/get_endo_roi.py +5 -3
- endoreg_db/models/media/video/video_file_meta/get_fps.py +37 -34
- endoreg_db/models/media/video/video_file_meta/initialize_video_specs.py +19 -25
- endoreg_db/models/media/video/video_file_meta/text_meta.py +41 -38
- endoreg_db/models/media/video/video_file_meta/video_meta.py +14 -7
- endoreg_db/models/media/video/video_file_segments.py +24 -17
- endoreg_db/models/media/video/video_metadata.py +19 -35
- endoreg_db/models/media/video/video_processing.py +96 -95
- endoreg_db/models/medical/contraindication/__init__.py +13 -3
- endoreg_db/models/medical/disease.py +22 -16
- endoreg_db/models/medical/event.py +31 -18
- endoreg_db/models/medical/examination/__init__.py +13 -6
- endoreg_db/models/medical/examination/examination.py +17 -18
- endoreg_db/models/medical/examination/examination_indication.py +26 -25
- endoreg_db/models/medical/examination/examination_time.py +16 -6
- endoreg_db/models/medical/examination/examination_time_type.py +9 -6
- endoreg_db/models/medical/examination/examination_type.py +3 -4
- endoreg_db/models/medical/finding/finding.py +38 -39
- endoreg_db/models/medical/finding/finding_classification.py +37 -48
- endoreg_db/models/medical/finding/finding_intervention.py +27 -22
- endoreg_db/models/medical/finding/finding_type.py +13 -12
- endoreg_db/models/medical/hardware/endoscope.py +20 -26
- endoreg_db/models/medical/hardware/endoscopy_processor.py +2 -2
- endoreg_db/models/medical/laboratory/lab_value.py +62 -91
- endoreg_db/models/medical/medication/medication.py +22 -10
- endoreg_db/models/medical/medication/medication_indication.py +29 -3
- endoreg_db/models/medical/medication/medication_indication_type.py +25 -14
- endoreg_db/models/medical/medication/medication_intake_time.py +31 -19
- endoreg_db/models/medical/medication/medication_schedule.py +27 -16
- endoreg_db/models/medical/organ/__init__.py +15 -12
- endoreg_db/models/medical/patient/medication_examples.py +1 -5
- endoreg_db/models/medical/patient/patient_disease.py +20 -23
- endoreg_db/models/medical/patient/patient_event.py +19 -22
- endoreg_db/models/medical/patient/patient_examination.py +48 -54
- endoreg_db/models/medical/patient/patient_examination_indication.py +16 -14
- endoreg_db/models/medical/patient/patient_finding.py +122 -139
- endoreg_db/models/medical/patient/patient_finding_classification.py +44 -49
- endoreg_db/models/medical/patient/patient_finding_intervention.py +8 -19
- endoreg_db/models/medical/patient/patient_lab_sample.py +28 -23
- endoreg_db/models/medical/patient/patient_lab_value.py +82 -89
- endoreg_db/models/medical/patient/patient_medication.py +27 -38
- endoreg_db/models/medical/patient/patient_medication_schedule.py +28 -36
- endoreg_db/models/medical/risk/risk.py +7 -6
- endoreg_db/models/medical/risk/risk_type.py +8 -5
- endoreg_db/models/metadata/model_meta.py +60 -29
- endoreg_db/models/metadata/model_meta_logic.py +139 -18
- endoreg_db/models/metadata/pdf_meta.py +19 -24
- endoreg_db/models/metadata/sensitive_meta.py +102 -85
- endoreg_db/models/metadata/sensitive_meta_logic.py +383 -43
- endoreg_db/models/metadata/video_meta.py +51 -31
- endoreg_db/models/metadata/video_prediction_logic.py +16 -23
- endoreg_db/models/metadata/video_prediction_meta.py +29 -33
- endoreg_db/models/other/distribution/date_value_distribution.py +89 -29
- endoreg_db/models/other/distribution/multiple_categorical_value_distribution.py +21 -5
- endoreg_db/models/other/distribution/numeric_value_distribution.py +114 -53
- endoreg_db/models/other/distribution/single_categorical_value_distribution.py +4 -3
- endoreg_db/models/other/emission/emission_factor.py +18 -8
- endoreg_db/models/other/gender.py +10 -5
- endoreg_db/models/other/information_source.py +25 -25
- endoreg_db/models/other/material.py +9 -5
- endoreg_db/models/other/resource.py +6 -4
- endoreg_db/models/other/tag.py +10 -5
- endoreg_db/models/other/transport_route.py +13 -8
- endoreg_db/models/other/unit.py +10 -6
- endoreg_db/models/other/waste.py +6 -5
- endoreg_db/models/requirement/requirement.py +580 -272
- endoreg_db/models/requirement/requirement_error.py +85 -0
- endoreg_db/models/requirement/requirement_evaluation/evaluate_with_dependencies.py +268 -0
- endoreg_db/models/requirement/requirement_evaluation/operator_evaluation_models.py +3 -6
- endoreg_db/models/requirement/requirement_evaluation/requirement_type_parser.py +90 -64
- endoreg_db/models/requirement/requirement_operator.py +36 -33
- endoreg_db/models/requirement/requirement_set.py +74 -57
- endoreg_db/models/state/__init__.py +4 -4
- endoreg_db/models/state/abstract.py +2 -2
- endoreg_db/models/state/anonymization.py +12 -0
- endoreg_db/models/state/audit_ledger.py +46 -47
- endoreg_db/models/state/label_video_segment.py +9 -0
- endoreg_db/models/state/raw_pdf.py +40 -46
- endoreg_db/models/state/sensitive_meta.py +6 -2
- endoreg_db/models/state/video.py +58 -53
- endoreg_db/models/upload_job.py +32 -55
- endoreg_db/models/utils.py +1 -2
- endoreg_db/root_urls.py +21 -2
- endoreg_db/serializers/__init__.py +26 -57
- endoreg_db/serializers/anonymization.py +18 -10
- endoreg_db/serializers/meta/report_meta.py +1 -1
- endoreg_db/serializers/meta/sensitive_meta_detail.py +63 -118
- endoreg_db/serializers/misc/__init__.py +1 -1
- endoreg_db/serializers/misc/file_overview.py +33 -91
- endoreg_db/serializers/misc/{vop_patient_data.py → sensitive_patient_data.py} +1 -1
- endoreg_db/serializers/requirements/requirement_sets.py +92 -22
- endoreg_db/serializers/video/segmentation.py +2 -1
- endoreg_db/serializers/video/video_processing_history.py +20 -5
- endoreg_db/serializers/video_examination.py +198 -0
- endoreg_db/services/anonymization.py +75 -73
- endoreg_db/services/lookup_service.py +256 -73
- endoreg_db/services/lookup_store.py +174 -30
- endoreg_db/services/pdf_import.py +711 -310
- endoreg_db/services/storage_aware_video_processor.py +140 -114
- endoreg_db/services/video_import.py +266 -117
- endoreg_db/urls/__init__.py +27 -27
- endoreg_db/urls/label_video_segments.py +2 -0
- endoreg_db/urls/media.py +108 -66
- endoreg_db/urls/root_urls.py +29 -0
- endoreg_db/utils/__init__.py +15 -5
- endoreg_db/utils/ai/multilabel_classification_net.py +116 -20
- endoreg_db/utils/case_generator/__init__.py +3 -0
- endoreg_db/utils/dataloader.py +88 -16
- endoreg_db/utils/defaults/set_default_center.py +32 -0
- endoreg_db/utils/names.py +22 -16
- endoreg_db/utils/permissions.py +2 -1
- endoreg_db/utils/pipelines/process_video_dir.py +1 -1
- endoreg_db/utils/requirement_operator_logic/model_evaluators.py +414 -127
- endoreg_db/utils/setup_config.py +8 -5
- endoreg_db/utils/storage.py +115 -0
- endoreg_db/utils/validate_endo_roi.py +8 -2
- endoreg_db/utils/video/ffmpeg_wrapper.py +184 -188
- endoreg_db/views/__init__.py +5 -12
- endoreg_db/views/anonymization/media_management.py +198 -163
- endoreg_db/views/anonymization/overview.py +4 -1
- endoreg_db/views/anonymization/validate.py +174 -40
- endoreg_db/views/media/__init__.py +2 -0
- endoreg_db/views/media/pdf_media.py +131 -150
- endoreg_db/views/media/sensitive_metadata.py +46 -6
- endoreg_db/views/media/video_media.py +89 -82
- endoreg_db/views/media/video_segments.py +187 -260
- endoreg_db/views/meta/sensitive_meta_detail.py +0 -63
- endoreg_db/views/patient/patient.py +5 -4
- endoreg_db/views/pdf/__init__.py +5 -8
- endoreg_db/views/pdf/pdf_stream.py +186 -0
- endoreg_db/views/pdf/pdf_stream_views.py +0 -127
- endoreg_db/views/pdf/reimport.py +86 -91
- endoreg_db/views/requirement/evaluate.py +188 -187
- endoreg_db/views/requirement/lookup.py +186 -288
- endoreg_db/views/requirement/requirement_utils.py +89 -0
- endoreg_db/views/video/__init__.py +0 -4
- endoreg_db/views/video/correction.py +2 -2
- endoreg_db/views/video/video_examination_viewset.py +202 -289
- {endoreg_db-0.8.4.4.dist-info → endoreg_db-0.8.8.0.dist-info}/METADATA +7 -3
- {endoreg_db-0.8.4.4.dist-info → endoreg_db-0.8.8.0.dist-info}/RECORD +350 -255
- endoreg_db/models/administration/permissions/__init__.py +0 -44
- endoreg_db/models/media/video/refactor_plan.md +0 -0
- endoreg_db/models/media/video/video_file_frames.py +0 -0
- endoreg_db/models/metadata/frame_ocr_result.py +0 -0
- endoreg_db/models/rule/__init__.py +0 -13
- endoreg_db/models/rule/rule.py +0 -27
- endoreg_db/models/rule/rule_applicator.py +0 -224
- endoreg_db/models/rule/rule_attribute_dtype.py +0 -17
- endoreg_db/models/rule/rule_type.py +0 -20
- endoreg_db/models/rule/ruleset.py +0 -17
- endoreg_db/serializers/video/video_metadata.py +0 -105
- endoreg_db/urls/report.py +0 -48
- endoreg_db/urls/video.py +0 -61
- endoreg_db/utils/case_generator/case_generator.py +0 -159
- endoreg_db/utils/case_generator/utils.py +0 -30
- endoreg_db/views/pdf/pdf_media.py +0 -239
- endoreg_db/views/report/__init__.py +0 -9
- endoreg_db/views/report/report_list.py +0 -112
- endoreg_db/views/report/report_with_secure_url.py +0 -28
- endoreg_db/views/report/start_examination.py +0 -7
- endoreg_db/views/video/video_media.py +0 -158
- endoreg_db/views.py +0 -0
- /endoreg_db/data/{requirement_set → _examples/requirement_set}/endoscopy_bleeding_risk.yaml +0 -0
- /endoreg_db/migrations/{0002_add_video_correction_models.py → _old/0002_add_video_correction_models.py} +0 -0
- /endoreg_db/migrations/{0003_add_center_display_name.py → _old/0003_add_center_display_name.py} +0 -0
- {endoreg_db-0.8.4.4.dist-info → endoreg_db-0.8.8.0.dist-info}/WHEEL +0 -0
- {endoreg_db-0.8.4.4.dist-info → endoreg_db-0.8.8.0.dist-info}/licenses/LICENSE +0 -0
|
@@ -0,0 +1,66 @@
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# libs/endoreg-db/endoreg_db/authz/views_auth.py
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from rest_framework.decorators import api_view, permission_classes
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from rest_framework.permissions import IsAuthenticated
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from rest_framework.response import Response
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from .policy import REQUIRED_ROLES, DEFAULT_ROLE_BY_METHOD, satisfies, get_needed_role
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# Map frontend page keys → (DRF route name, HTTP method)
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#
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# Route names come from your router registration, e.g.:
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# router.register(r'patients', PatientViewSet, basename='patient')
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# => "patient-list", "patient-detail"
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PAGE_CAPS = {
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# Vue route /patienten
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"page.patients.view": ("patient-list", "GET"),
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# You can extend later, e.g.:
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# "page.reports.view": ("report-list", "GET"),
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# "page.anonymization.view": ("anonymization-list", "GET"),
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}
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@api_view(["GET"])
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@permission_classes([IsAuthenticated])
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def auth_bootstrap(request):
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"""
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Return auth context for the frontend:
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- current user (username, basic info)
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- roles (Django groups, synced from Keycloak)
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- capabilities (what parts of UI the user may access)
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"""
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user = request.user
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# Roles = Django group names = Keycloak roles synced from Keycloak
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roles = set(user.groups.values_list("name", flat=True))
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capabilities = {}
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for cap_key, (route_name, method) in PAGE_CAPS.items():
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method = method.upper()
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# Look up which role is needed for this route/method
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#needed = REQUIRED_ROLES.get(route_name) or DEFAULT_ROLE_BY_METHOD.get(method)
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needed = get_needed_role(route_name, method)
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if not needed:
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# No role mapping defined → secure default: deny
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capabilities[cap_key] = {"read": False, "write": False}
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continue
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allowed = satisfies(roles, needed) # uses your existing rule: write ⇒ read, etc.
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# For UI pages we usually only care about "read"
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capabilities[cap_key] = {
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"read": bool(allowed),
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"write": False, # or bool(allowed) if this page allows writes in UI
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}
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return Response({
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"user": {
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"username": user.username,
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"roles": sorted(roles),
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},
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"roles": sorted(roles),
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"capabilities": capabilities,
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})
|
endoreg_db/config/env.py
CHANGED
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@@ -5,11 +5,12 @@ This module is the single place to read environment variables and .env files.
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5
5
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It avoids loading .env during pytest, and provides typed helpers.
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No Django imports here to prevent early settings configuration.
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"""
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from __future__ import annotations
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from pathlib import Path
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import os
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from
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from pathlib import Path
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from typing import Any, Dict, Optional
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# Detect pytest early to avoid loading .env in test runs
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IS_PYTEST = bool(os.environ.get("PYTEST_CURRENT_TEST"))
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@@ -21,7 +22,8 @@ BASE_DIR = Path(__file__).resolve().parents[2]
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_DOTENV_LOADED = False
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try:
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if not IS_PYTEST:
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import dotenv
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import dotenv
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dotenv.load_dotenv()
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_DOTENV_LOADED = True
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except Exception:
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@@ -90,12 +92,15 @@ def snapshot() -> Dict[str, Any]:
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90
92
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"SKIP_EXPENSIVE_TESTS",
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93
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]
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data: Dict[str, Any] = {k: os.environ.get(k) for k in keys}
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data.update(
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data.update(
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{
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"IS_PYTEST": IS_PYTEST,
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"DOTENV_LOADED": _DOTENV_LOADED,
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"BASE_DIR": str(BASE_DIR),
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}
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)
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return data
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# Back-compat short aliases used by settings modules
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ENV = os.environ.get
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endoreg_db/data/__init__.py
CHANGED
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@@ -27,29 +27,17 @@ CONTRAINDICATION_DATA_DIR = DATA_DIR / "contraindication"
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# Examination
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EXAMINATION_INDICATION_DATA_DIR = DATA_DIR / "examination_indication"
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EXAMINATION_INDICATION_CLASSIFICATION_DATA_DIR =
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)
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EXAMINATION_INDICATION_CLASSIFICATION_CHOICE_DATA_DIR = (
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DATA_DIR / "examination_indication_classification_choice"
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)
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EXAMINATION_INDICATION_CLASSIFICATION_DATA_DIR = DATA_DIR / "examination_indication_classification"
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EXAMINATION_INDICATION_CLASSIFICATION_CHOICE_DATA_DIR = DATA_DIR / "examination_indication_classification_choice"
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# Finding
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FINDING_TYPE_DATA_DIR = DATA_DIR / "finding_type"
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FINDING_DATA_DIR = DATA_DIR / "finding"
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FINDING_LOCATION_CLASSIFICATION_DATA_DIR = DATA_DIR / "finding_location_classification"
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FINDING_LOCATION_CLASSIFICATION_CHOICE_DATA_DIR =
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DATA_DIR / "finding_morphology_classification"
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)
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FINDING_MORPHOLOGY_CLASSIFICATION_CHOICE_DATA_DIR = (
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DATA_DIR / "finding_morphology_classification_choice"
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)
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FINDING_MORPGOLOGY_CLASSIFICATION_TYPE_DATA_DIR = (
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DATA_DIR / "finding_morphology_classification_type"
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)
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FINDING_LOCATION_CLASSIFICATION_CHOICE_DATA_DIR = DATA_DIR / "finding_location_classification_choice"
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FINDING_MORPHOLOGY_CLASSIFICATION_DATA_DIR = DATA_DIR / "finding_morphology_classification"
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FINDING_MORPHOLOGY_CLASSIFICATION_CHOICE_DATA_DIR = DATA_DIR / "finding_morphology_classification_choice"
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FINDING_MORPGOLOGY_CLASSIFICATION_TYPE_DATA_DIR = DATA_DIR / "finding_morphology_classification_type"
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FINDING_INTERVETION_DATA_DIR = DATA_DIR / "finding_intervention"
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42
|
FINIDNG_INTERVENTION_TYPE_DATA_DIR = DATA_DIR / "finding_intervention_type"
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43
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@@ -81,20 +69,9 @@ MEDICATION_INDICATION_TYPE_DATA_DIR = DATA_DIR / "medication_indication_type"
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81
69
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DISTRIBUTION_BASE_DIR = DATA_DIR / "distribution"
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70
|
DISTRIBUTION_SINGLE_CATEGORICAL_DATA_DIR = DISTRIBUTION_BASE_DIR / "single_categorical"
|
|
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71
|
DISTRIBUTION_NUMERIC_DATA_DIR = DISTRIBUTION_BASE_DIR / "numeric"
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84
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-
DISTRIBUTION_MULTIPLE_CATEGORICAL_DATA_DIR =
|
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DISTRIBUTION_BASE_DIR / "multiple_categorical"
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-
)
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+
DISTRIBUTION_MULTIPLE_CATEGORICAL_DATA_DIR = DISTRIBUTION_BASE_DIR / "multiple_categorical"
|
|
87
73
|
DISTRIBUTION_DATE_DATA_DIR = DISTRIBUTION_BASE_DIR / "date"
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|
88
74
|
|
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89
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-
# G-Play Stuffs
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|
90
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-
CASE_TEMPLATE_BASE_DIR = DATA_DIR / "case_template"
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-
CASE_TEMPLATE_DATA_DIR = CASE_TEMPLATE_BASE_DIR / "template"
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-
CASE_TEMPLATE_TYPE_DATA_DIR = CASE_TEMPLATE_BASE_DIR / "template_type"
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CASE_TEMPLATE_RULE_DATA_DIR = CASE_TEMPLATE_BASE_DIR / "rule"
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94
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-
CASE_TEMPLATE_RULE_TYPE_DATA_DIR = CASE_TEMPLATE_BASE_DIR / "rule_type"
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95
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-
CASE_TEMPLATE_RULE_VALUE_DATA_DIR = CASE_TEMPLATE_BASE_DIR / "rule_value"
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96
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-
CASE_TEMPLATE_RULE_VALUE_TYPE_DATA_DIR = CASE_TEMPLATE_BASE_DIR / "rule_value_type"
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|
97
|
-
|
|
98
75
|
# NETWORK
|
|
99
76
|
NETWORK_DEVICE_DATA_DIR = DATA_DIR / "network_device"
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100
77
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NETWORK_DEVICE_TYPE_DATA_DIR = DATA_DIR / "network_device_type"
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|
@@ -141,4 +118,4 @@ QUALIFICATION_DATA_DIR = DATA_DIR / "qualification"
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141
118
|
|
|
142
119
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TAG_DATA_DIR = DATA_DIR / "tag"
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143
120
|
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-
EXAMINATION_REQUIREMENT_SET_DATA_DIR = DATA_DIR / "examination_requirement_set"
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121
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+
EXAMINATION_REQUIREMENT_SET_DATA_DIR = DATA_DIR / "examination_requirement_set"
|
|
@@ -0,0 +1,55 @@
|
|
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1
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+
- model: endoreg_db.disease
|
|
2
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+
fields:
|
|
3
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+
name: "hypertension"
|
|
4
|
+
name_de: "Arterielle Hypertonie"
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|
5
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+
name_en: "Hypertension"
|
|
6
|
+
|
|
7
|
+
- model: endoreg_db.disease
|
|
8
|
+
fields:
|
|
9
|
+
name: "coronary_artery_disease"
|
|
10
|
+
name_de: "Koronare Herzkrankheit"
|
|
11
|
+
name_en: "Coronary Artery Disease"
|
|
12
|
+
|
|
13
|
+
- model: endoreg_db.disease
|
|
14
|
+
fields:
|
|
15
|
+
name: "congestive_heart_failure"
|
|
16
|
+
name_de: "Chron. Herzinsuffizienz"
|
|
17
|
+
name_en: "Congestive Heart Failure"
|
|
18
|
+
|
|
19
|
+
# diabetes mellitus I
|
|
20
|
+
- model: endoreg_db.disease
|
|
21
|
+
fields:
|
|
22
|
+
name: "diabetes_mellitus_I"
|
|
23
|
+
name_de: "Diabetes mellitus Typ I"
|
|
24
|
+
name_en: "Diabetes Mellitus Type I"
|
|
25
|
+
|
|
26
|
+
# diabetes mellitus II
|
|
27
|
+
- model: endoreg_db.disease
|
|
28
|
+
fields:
|
|
29
|
+
name: "diabetes_mellitus_II"
|
|
30
|
+
name_de: "Diabetes mellitus Typ II"
|
|
31
|
+
name_en: "Diabetes Mellitus Type II"
|
|
32
|
+
|
|
33
|
+
- model: endoreg_db.disease
|
|
34
|
+
fields:
|
|
35
|
+
name: "non_valvular_atrial_fibrillation"
|
|
36
|
+
name_de: "nicht valvuläres Vorhofflimmern"
|
|
37
|
+
name_en: "non valvular Atrial Fibrillation"
|
|
38
|
+
|
|
39
|
+
- model: endoreg_db.disease
|
|
40
|
+
fields:
|
|
41
|
+
name: "liver_cirrhosis"
|
|
42
|
+
name_de: "Leberzirrhose"
|
|
43
|
+
name_en: "Liver Cirrhosis"
|
|
44
|
+
|
|
45
|
+
- model: endoreg_db.disease
|
|
46
|
+
fields:
|
|
47
|
+
name: "disease_is_malignoma_unspecified"
|
|
48
|
+
name_de: "Malignom, nicht näher bezeichnet"
|
|
49
|
+
name_en: "Malignoma, unspecified"
|
|
50
|
+
|
|
51
|
+
- model: endoreg_db.disease
|
|
52
|
+
fields:
|
|
53
|
+
name: "chronic_kidney_disease"
|
|
54
|
+
name_de: "Chronische Nierenerkrankung"
|
|
55
|
+
name_en: "Chronic Kidney Disease"
|
|
@@ -0,0 +1,13 @@
|
|
|
1
|
+
- model: endoreg_db.disease_classification
|
|
2
|
+
fields:
|
|
3
|
+
name: "chronic_kidney_disease_kdigo"
|
|
4
|
+
name_de: "Chronische Nierenerkrankung (KDIGO)"
|
|
5
|
+
name_en: "Chronic Kidney Disease (KDIGO)"
|
|
6
|
+
disease: "chronic_kidney_disease"
|
|
7
|
+
|
|
8
|
+
- model: endoreg_db.disease_classification
|
|
9
|
+
fields:
|
|
10
|
+
name: "coronary_artery_disease_base_classification"
|
|
11
|
+
name_de: "Koronare Gefäßerkrankung (N-Gefäß-Erkrankung)"
|
|
12
|
+
name_en: "Coronary Vessel Disease (N-Vessel Disease)"
|
|
13
|
+
disease: "coronary_artery_disease"
|
|
@@ -0,0 +1,62 @@
|
|
|
1
|
+
- model: endoreg_db.disease_classification_choice
|
|
2
|
+
fields:
|
|
3
|
+
name: "ckd_kdigo_1"
|
|
4
|
+
name_de: "Chronische Nierenerkrankung (KDIGO) (Stadium 1)"
|
|
5
|
+
name_en: "Chronic Kidney Disease (KDIGO) (Stage 1)"
|
|
6
|
+
disease_classification: "chronic_kidney_disease_kdigo"
|
|
7
|
+
|
|
8
|
+
- model: endoreg_db.disease_classification_choice
|
|
9
|
+
fields:
|
|
10
|
+
name: "ckd_kdigo_2"
|
|
11
|
+
name_de: "Chronische Nierenerkrankung (KDIGO) (Stadium 2)"
|
|
12
|
+
name_en: "Chronic Kidney Disease (KDIGO) (Stage 2)"
|
|
13
|
+
disease_classification: "chronic_kidney_disease_kdigo"
|
|
14
|
+
|
|
15
|
+
- model: endoreg_db.disease_classification_choice
|
|
16
|
+
fields:
|
|
17
|
+
name: "ckd_kdigo_3a"
|
|
18
|
+
name_de: "Chronische Nierenerkrankung (KDIGO) (Stadium 3a)"
|
|
19
|
+
name_en: "Chronic Kidney Disease (KDIGO) (Stage 3a)"
|
|
20
|
+
disease_classification: "chronic_kidney_disease_kdigo"
|
|
21
|
+
|
|
22
|
+
- model: endoreg_db.disease_classification_choice
|
|
23
|
+
fields:
|
|
24
|
+
name: "ckd_kdigo_3b"
|
|
25
|
+
name_de: "Chronische Nierenerkrankung (KDIGO) (Stadium 3b)"
|
|
26
|
+
name_en: "Chronic Kidney Disease (KDIGO) (Stage 3b)"
|
|
27
|
+
disease_classification: "chronic_kidney_disease_kdigo"
|
|
28
|
+
|
|
29
|
+
- model: endoreg_db.disease_classification_choice
|
|
30
|
+
fields:
|
|
31
|
+
name: "ckd_kdigo_4"
|
|
32
|
+
name_de: "Chronische Nierenerkrankung (KDIGO) (Stadium 4)"
|
|
33
|
+
name_en: "Chronic Kidney Disease (KDIGO) (Stage 4)"
|
|
34
|
+
disease_classification: "chronic_kidney_disease_kdigo"
|
|
35
|
+
|
|
36
|
+
- model: endoreg_db.disease_classification_choice
|
|
37
|
+
fields:
|
|
38
|
+
name: "ckd_kdigo_5"
|
|
39
|
+
name_de: "Chronische Nierenerkrankung (KDIGO) (Stadium 5)"
|
|
40
|
+
name_en: "Chronic Kidney Disease (KDIGO) (Stage 5)"
|
|
41
|
+
disease_classification: "chronic_kidney_disease_kdigo"
|
|
42
|
+
|
|
43
|
+
- model: endoreg_db.disease_classification_choice
|
|
44
|
+
fields:
|
|
45
|
+
name: "khk_1_ge"
|
|
46
|
+
name_de: "Koronare Gefäßerkrankung (1-Gefäß-Erkrankung)"
|
|
47
|
+
name_en: "Coronary Vessel Disease (1-Vessel Disease)"
|
|
48
|
+
disease_classification: "coronary_artery_disease_base_classification"
|
|
49
|
+
|
|
50
|
+
- model: endoreg_db.disease_classification_choice
|
|
51
|
+
fields:
|
|
52
|
+
name: "khk_2_ge"
|
|
53
|
+
name_de: "Koronare Gefäßerkrankung (2-Gefäß-Erkrankung)"
|
|
54
|
+
name_en: "Coronary Vessel Disease (2-Vessel Disease)"
|
|
55
|
+
disease_classification: "coronary_artery_disease_base_classification"
|
|
56
|
+
|
|
57
|
+
- model: endoreg_db.disease_classification_choice
|
|
58
|
+
fields:
|
|
59
|
+
name: "khk_3_ge"
|
|
60
|
+
name_de: "Koronare Gefäßerkrankung (3-Gefäß-Erkrankung)"
|
|
61
|
+
name_en: "Coronary Vessel Disease (3-Vessel Disease)"
|
|
62
|
+
disease_classification: "coronary_artery_disease_base_classification"
|
|
@@ -0,0 +1,64 @@
|
|
|
1
|
+
- model: endoreg_db.event
|
|
2
|
+
fields:
|
|
3
|
+
name: "coro_des_implantation"
|
|
4
|
+
name_de: "Koronarstent-Implantation (DES)"
|
|
5
|
+
name_en: "Coronary Stent Implantation (DES)"
|
|
6
|
+
|
|
7
|
+
- model: endoreg_db.event
|
|
8
|
+
fields:
|
|
9
|
+
name: "coro_bms_implantation"
|
|
10
|
+
name_de: "Koronarstent-Implantation (BMS)"
|
|
11
|
+
name_en: "Coronary Stent Implantation (BMS)"
|
|
12
|
+
|
|
13
|
+
- model: endoreg_db.event
|
|
14
|
+
fields:
|
|
15
|
+
name: "complication_coro_stent_thrombosis"
|
|
16
|
+
name_de: "Komplikation: Koronar Stent Thrombose"
|
|
17
|
+
name_en: "Complication: Coronary Stent Thrombosis"
|
|
18
|
+
|
|
19
|
+
- model: endoreg_db.event
|
|
20
|
+
fields:
|
|
21
|
+
name: "stroke"
|
|
22
|
+
name_de: "Schlaganfall"
|
|
23
|
+
name_en: "Stroke"
|
|
24
|
+
|
|
25
|
+
- model: endoreg_db.event
|
|
26
|
+
fields:
|
|
27
|
+
name: "transient_ischemic_attack"
|
|
28
|
+
name_de: "Transitorische ischämische Attacke"
|
|
29
|
+
name_en: "Transient Ischemic Attack"
|
|
30
|
+
|
|
31
|
+
- model: endoreg_db.event
|
|
32
|
+
fields:
|
|
33
|
+
name: "hip_replacement_surgery"
|
|
34
|
+
name_de: "Hüft-TEP Operation"
|
|
35
|
+
name_en: "Hip replacement surgery"
|
|
36
|
+
description: "Hip replacement surgery"
|
|
37
|
+
|
|
38
|
+
- model: endoreg_db.event
|
|
39
|
+
fields:
|
|
40
|
+
name: "knee_replacement_surgery"
|
|
41
|
+
name_de: "Knie-TEP Operation"
|
|
42
|
+
name_en: "Knee replacement surgery"
|
|
43
|
+
description: "Knee replacement surgery"
|
|
44
|
+
|
|
45
|
+
- model: endoreg_db.event
|
|
46
|
+
fields:
|
|
47
|
+
name: "deep_vein_thrombosis"
|
|
48
|
+
name_de: "Tiefe Beinvenenthrombose"
|
|
49
|
+
name_en: "Deep Vein Thrombosis"
|
|
50
|
+
description: "Deep Vein Thrombosis"
|
|
51
|
+
|
|
52
|
+
- model: endoreg_db.event
|
|
53
|
+
fields:
|
|
54
|
+
name: "pulmonary_embolism"
|
|
55
|
+
name_de: "Lungenembolie"
|
|
56
|
+
name_en: "Pulmonary Embolism"
|
|
57
|
+
description: "Pulmonary Embolism"
|
|
58
|
+
|
|
59
|
+
- model: endoreg_db.event
|
|
60
|
+
fields:
|
|
61
|
+
name: "recurrent_thrombembolism"
|
|
62
|
+
name_de: "Rezidivierende Thrombembolien"
|
|
63
|
+
name_en: "Recurrent Thrombembolism"
|
|
64
|
+
description: "Recurrent Thrombembolism"
|
|
@@ -0,0 +1,72 @@
|
|
|
1
|
+
- model: endoreg_db.Examination
|
|
2
|
+
fields:
|
|
3
|
+
name: "colonoscopy"
|
|
4
|
+
name_de: "Koloskopie"
|
|
5
|
+
name_en: "Colonoscopy"
|
|
6
|
+
examination_types: ["endoscopy"]
|
|
7
|
+
|
|
8
|
+
- model: endoreg_db.Examination
|
|
9
|
+
fields:
|
|
10
|
+
name: "gastroscopy"
|
|
11
|
+
name_de: "Gastroskopie"
|
|
12
|
+
name_en: "Gastroscopy"
|
|
13
|
+
examination_types: ["endoscopy"]
|
|
14
|
+
|
|
15
|
+
# endosonography_upper_gi
|
|
16
|
+
- model: endoreg_db.Examination
|
|
17
|
+
fields:
|
|
18
|
+
name: "endosonography_upper_gi"
|
|
19
|
+
name_de: "Endosonographie oberer GI-Trakt"
|
|
20
|
+
name_en: "Endosonography Upper GI Tract"
|
|
21
|
+
examination_types: ["endoscopy"]
|
|
22
|
+
|
|
23
|
+
- model: endoreg_db.Examination
|
|
24
|
+
fields:
|
|
25
|
+
name: "endosonography_lower_gi"
|
|
26
|
+
name_de: "Endosonographie unterer GI-Trakt"
|
|
27
|
+
name_en: "Endosonography Lower GI Tract"
|
|
28
|
+
examination_types: ["endoscopy"]
|
|
29
|
+
|
|
30
|
+
# ERCP
|
|
31
|
+
- model: endoreg_db.Examination
|
|
32
|
+
fields:
|
|
33
|
+
name: "ercp"
|
|
34
|
+
name_de: "ERCP"
|
|
35
|
+
name_en: "ERCP"
|
|
36
|
+
examination_types: ["endoscopy"]
|
|
37
|
+
|
|
38
|
+
# small bowel endoscopy
|
|
39
|
+
- model: endoreg_db.Examination
|
|
40
|
+
fields:
|
|
41
|
+
name: "small_bowel_endoscopy"
|
|
42
|
+
name_de: "Dünndarmendoskopie"
|
|
43
|
+
name_en: "Small Bowel Endoscopy"
|
|
44
|
+
examination_types: ["endoscopy"]
|
|
45
|
+
|
|
46
|
+
# capsule endoscopy
|
|
47
|
+
- model: endoreg_db.Examination
|
|
48
|
+
fields:
|
|
49
|
+
name: "capsule_endoscopy"
|
|
50
|
+
name_de: "Kapselendoskopie"
|
|
51
|
+
name_en: "Capsule Endoscopy"
|
|
52
|
+
examination_types: ["endoscopy"]
|
|
53
|
+
|
|
54
|
+
- model: endoreg_db.Examination
|
|
55
|
+
fields:
|
|
56
|
+
name: "percutaneous_transhepatic_biliary_drainage"
|
|
57
|
+
name_de: "Perkutane transhepatische Gallengangdrainage"
|
|
58
|
+
name_en: "Percutaneous Transhepatic Biliary Drainage"
|
|
59
|
+
examination_types: ["endoscopy", "sonography", "xray"]
|
|
60
|
+
|
|
61
|
+
# percutaneous_transhepatic_cholangiography
|
|
62
|
+
- model: endoreg_db.Examination
|
|
63
|
+
fields:
|
|
64
|
+
name: "percutaneous_transhepatic_cholangiography"
|
|
65
|
+
name_de: "Perkutane transhepatische Cholangiographie"
|
|
66
|
+
name_en: "Percutaneous Transhepatic Cholangiography"
|
|
67
|
+
examination_types: ["endoscopy", "sonography", "xray"]
|
|
68
|
+
|
|
69
|
+
- model: endoreg_db.Examination
|
|
70
|
+
fields:
|
|
71
|
+
name: "colonoscopy_austria_screening"
|
|
72
|
+
examination_types: ["endoscopy"]
|
|
@@ -0,0 +1,128 @@
|
|
|
1
|
+
- model: endoreg_db.finding
|
|
2
|
+
fields:
|
|
3
|
+
name: "cecum"
|
|
4
|
+
description: "Anatomical structure: Cecum"
|
|
5
|
+
examinations:
|
|
6
|
+
[
|
|
7
|
+
"colonoscopy",
|
|
8
|
+
"colonoscopy_austria_screening",
|
|
9
|
+
]
|
|
10
|
+
|
|
11
|
+
finding_types: ["anatomy", "anatomy_colon"]
|
|
12
|
+
|
|
13
|
+
- model: endoreg_db.finding
|
|
14
|
+
fields:
|
|
15
|
+
name: "terminal_ileum"
|
|
16
|
+
description: "Anatomical structure: Terminal ileum"
|
|
17
|
+
examinations:
|
|
18
|
+
[
|
|
19
|
+
"colonoscopy",
|
|
20
|
+
"colonoscopy_austria_screening",
|
|
21
|
+
]
|
|
22
|
+
finding_types: ["anatomy", "anatomy_colon"]
|
|
23
|
+
|
|
24
|
+
- model: endoreg_db.finding
|
|
25
|
+
fields:
|
|
26
|
+
name: "ileocecal_valve"
|
|
27
|
+
description: "Anatomical structure: Ileocecal valve"
|
|
28
|
+
examinations:
|
|
29
|
+
[
|
|
30
|
+
"colonoscopy",
|
|
31
|
+
"colonoscopy_austria_screening",
|
|
32
|
+
]
|
|
33
|
+
finding_types: ["anatomy", "anatomy_colon"]
|
|
34
|
+
|
|
35
|
+
- model: endoreg_db.finding
|
|
36
|
+
fields:
|
|
37
|
+
name: "ascending_colon"
|
|
38
|
+
description: "Anatomical structure: Ascending colon"
|
|
39
|
+
examinations:
|
|
40
|
+
[
|
|
41
|
+
"colonoscopy",
|
|
42
|
+
"colonoscopy_austria_screening",
|
|
43
|
+
]
|
|
44
|
+
finding_types: ["anatomy", "anatomy_colon"]
|
|
45
|
+
|
|
46
|
+
# "right_flexure",
|
|
47
|
+
- model: endoreg_db.finding
|
|
48
|
+
fields:
|
|
49
|
+
name: "right_flexure"
|
|
50
|
+
description: "Anatomical structure: Right flexure"
|
|
51
|
+
examinations:
|
|
52
|
+
[
|
|
53
|
+
"colonoscopy",
|
|
54
|
+
"colonoscopy_austria_screening",
|
|
55
|
+
]
|
|
56
|
+
finding_types: ["anatomy", "anatomy_colon"]
|
|
57
|
+
|
|
58
|
+
# "transverse_colon",
|
|
59
|
+
- model: endoreg_db.finding
|
|
60
|
+
fields:
|
|
61
|
+
name: "transverse_colon"
|
|
62
|
+
description: "Anatomical structure: Transverse colon"
|
|
63
|
+
examinations:
|
|
64
|
+
[
|
|
65
|
+
"colonoscopy",
|
|
66
|
+
"colonoscopy_austria_screening",
|
|
67
|
+
]
|
|
68
|
+
finding_types: ["anatomy", "anatomy_colon"]
|
|
69
|
+
|
|
70
|
+
# "left_flexure",
|
|
71
|
+
- model: endoreg_db.finding
|
|
72
|
+
fields:
|
|
73
|
+
name: "left_flexure"
|
|
74
|
+
description: "Anatomical structure: Left flexure"
|
|
75
|
+
examinations:
|
|
76
|
+
[
|
|
77
|
+
"colonoscopy",
|
|
78
|
+
"colonoscopy_austria_screening",
|
|
79
|
+
]
|
|
80
|
+
finding_types: ["anatomy", "anatomy_colon"]
|
|
81
|
+
|
|
82
|
+
# "descending_colon",
|
|
83
|
+
- model: endoreg_db.finding
|
|
84
|
+
fields:
|
|
85
|
+
name: "descending_colon"
|
|
86
|
+
description: "Anatomical structure: Descending colon"
|
|
87
|
+
examinations:
|
|
88
|
+
[
|
|
89
|
+
"colonoscopy",
|
|
90
|
+
"colonoscopy_austria_screening",
|
|
91
|
+
]
|
|
92
|
+
finding_types: ["anatomy", "anatomy_colon"]
|
|
93
|
+
|
|
94
|
+
# "sigmoid_colon",
|
|
95
|
+
- model: endoreg_db.finding
|
|
96
|
+
fields:
|
|
97
|
+
name: "sigmoid_colon"
|
|
98
|
+
description: "Anatomical structure: Sigmoid colon"
|
|
99
|
+
examinations:
|
|
100
|
+
[
|
|
101
|
+
"colonoscopy",
|
|
102
|
+
"colonoscopy_austria_screening",
|
|
103
|
+
]
|
|
104
|
+
finding_types: ["anatomy", "anatomy_colon"]
|
|
105
|
+
|
|
106
|
+
# "rectum",
|
|
107
|
+
- model: endoreg_db.finding
|
|
108
|
+
fields:
|
|
109
|
+
name: "rectum"
|
|
110
|
+
description: "Anatomical structure: Rectum"
|
|
111
|
+
examinations:
|
|
112
|
+
[
|
|
113
|
+
"colonoscopy",
|
|
114
|
+
"colonoscopy_austria_screening",
|
|
115
|
+
]
|
|
116
|
+
finding_types: ["anatomy", "anatomy_colon"]
|
|
117
|
+
|
|
118
|
+
# "rectum_anus",
|
|
119
|
+
- model: endoreg_db.finding
|
|
120
|
+
fields:
|
|
121
|
+
name: "rectum_anus"
|
|
122
|
+
description: "Anatomical structure: Rectum and anus"
|
|
123
|
+
examinations:
|
|
124
|
+
[
|
|
125
|
+
"colonoscopy",
|
|
126
|
+
"colonoscopy_austria_screening",
|
|
127
|
+
]
|
|
128
|
+
finding_types: ["anatomy", "anatomy_colon"]
|
|
@@ -0,0 +1,40 @@
|
|
|
1
|
+
- model: endoreg_db.finding
|
|
2
|
+
fields:
|
|
3
|
+
name: "colon_polyp"
|
|
4
|
+
name_de: "Kolonpolyp"
|
|
5
|
+
name_en: "Colon Polyp"
|
|
6
|
+
|
|
7
|
+
finding_interventions:
|
|
8
|
+
[
|
|
9
|
+
"colon_lesion_polypectomy_cold_snare",
|
|
10
|
+
"colon_lesion_polypectomy_hot_snare",
|
|
11
|
+
"colon_lesion_injection_liftup",
|
|
12
|
+
"colon_lesion_injection_vasoactive",
|
|
13
|
+
"colon_lesion_biopsy",
|
|
14
|
+
"colon_lesion_emr",
|
|
15
|
+
"colon_lesion_esd",
|
|
16
|
+
"colon_lesion_eftr",
|
|
17
|
+
"colon_lesion_clip",
|
|
18
|
+
]
|
|
19
|
+
examinations: ["colonoscopy", "colonoscopy_austria_screening"]
|
|
20
|
+
|
|
21
|
+
finding_types: ["macroscopic"]
|
|
22
|
+
|
|
23
|
+
- model: endoreg_db.finding
|
|
24
|
+
fields:
|
|
25
|
+
name: "colonoscopy_complete"
|
|
26
|
+
examinations:
|
|
27
|
+
[
|
|
28
|
+
"colonoscopy",
|
|
29
|
+
"colonoscopy_austria_screening",
|
|
30
|
+
]
|
|
31
|
+
finding_types: ["summary"]
|
|
32
|
+
|
|
33
|
+
- model: endoreg_db.finding
|
|
34
|
+
fields:
|
|
35
|
+
name: "colonoscopy_austria_screening_findings_summary"
|
|
36
|
+
examinations:
|
|
37
|
+
[
|
|
38
|
+
"colonoscopy_austria_screening",
|
|
39
|
+
]
|
|
40
|
+
finding_types: ["summary"]
|
|
@@ -0,0 +1,56 @@
|
|
|
1
|
+
- model: endoreg_db.finding
|
|
2
|
+
fields:
|
|
3
|
+
name: "bowel_preparation_lc"
|
|
4
|
+
name_de: "Darmvorbereitung (Linkes Kolon)"
|
|
5
|
+
name_en: "Bowel Preparation (Left Colon)"
|
|
6
|
+
examinations:
|
|
7
|
+
[
|
|
8
|
+
"colonoscopy",
|
|
9
|
+
]
|
|
10
|
+
|
|
11
|
+
finding_types: ["macroscopic"]
|
|
12
|
+
|
|
13
|
+
- model: endoreg_db.finding
|
|
14
|
+
fields:
|
|
15
|
+
name: "bowel_preparation_tc"
|
|
16
|
+
name_de: "Darmvorbereitung (Kolon Transversum)"
|
|
17
|
+
name_en: "Bowel Preparation (Transverse Colon)"
|
|
18
|
+
examinations:
|
|
19
|
+
[
|
|
20
|
+
"colonoscopy",
|
|
21
|
+
]
|
|
22
|
+
|
|
23
|
+
finding_types: ["macroscopic"]
|
|
24
|
+
|
|
25
|
+
- model: endoreg_db.finding
|
|
26
|
+
fields:
|
|
27
|
+
name: "bowel_preparation_rc"
|
|
28
|
+
name_de: "Darmvorbereitung (Rechtes Kolon)"
|
|
29
|
+
name_en: "Bowel Preparation (Right Colon)"
|
|
30
|
+
examinations:
|
|
31
|
+
[
|
|
32
|
+
"colonoscopy",
|
|
33
|
+
]
|
|
34
|
+
|
|
35
|
+
finding_types: ["macroscopic"]
|
|
36
|
+
|
|
37
|
+
- model: endoreg_db.finding
|
|
38
|
+
fields:
|
|
39
|
+
name: "bowel_preparation_simplified"
|
|
40
|
+
name_de: "Darmvorbereitung (Vereinfacht)"
|
|
41
|
+
name_en: "Bowel Preparation (Simplified)"
|
|
42
|
+
examinations:
|
|
43
|
+
[
|
|
44
|
+
"colonoscopy",
|
|
45
|
+
]
|
|
46
|
+
|
|
47
|
+
finding_types: ["macroscopic"]
|
|
48
|
+
|
|
49
|
+
- model: endoreg_db.finding
|
|
50
|
+
fields:
|
|
51
|
+
name: "bowel_prep_screening_austria"
|
|
52
|
+
examinations:
|
|
53
|
+
[
|
|
54
|
+
"colonoscopy_austria_screening",
|
|
55
|
+
]
|
|
56
|
+
finding_types: ["macroscopic"]
|
|
@@ -0,0 +1,16 @@
|
|
|
1
|
+
- model: endoreg_db.finding
|
|
2
|
+
fields:
|
|
3
|
+
name: "complication"
|
|
4
|
+
examinations: [
|
|
5
|
+
"gastroscopy",
|
|
6
|
+
"endosonography_upper_gi",
|
|
7
|
+
"endosonography_lower_gi",
|
|
8
|
+
"ercp",
|
|
9
|
+
"small_bowel_endoscopy",
|
|
10
|
+
"capsule_endoscopy",
|
|
11
|
+
"percutaneous_transhepatic_biliary_drainage",
|
|
12
|
+
"colonoscopy",
|
|
13
|
+
"colonoscopy_austria_screening",
|
|
14
|
+
]
|
|
15
|
+
|
|
16
|
+
finding_types: ["complication"]
|