endoreg-db 0.6.0__py3-none-any.whl → 0.6.2__py3-none-any.whl

endoreg_db/data/center_resource/green_endoscopy_dashboard_CenterResource.yaml

@@ -0,0 +1,144 @@
+- fields:
+    center: university_hospital_wuerzburg
+    name: gas_ukw_2020
+    name_de: Erdgas
+    name_en: Gas
+    quantity: 19000
+    resource: gas
+    transport_emission_factor: transport_resource_emission_ukw_gas
+    unit: liter
+    use_emission_factor: use_resource_emission_ukw_gas
+    year: 2020
+  model: CenterResource
+- fields:
+    center: university_hospital_wuerzburg
+    name: oil_ukw_2020
+    name_de: "Heizöl"
+    name_en: Oil
+    quantity: 0
+    resource: oil
+    transport_emission_factor: transport_resource_emission_ukw_oil
+    unit: cubic_meter
+    use_emission_factor: use_resource_emission_ukw_oil
+    year: 2020
+  model: CenterResource
+- fields:
+    center: university_hospital_wuerzburg
+    name: electricity_ukw_extern_2020
+    name_de: Strom (Bezug)
+    name_en: Electricity (extern)
+    quantity: 48000
+    resource: electricity
+    transport_emission_factor: transport_resource_emission_ukw_electricity_extern
+    unit: kilowatt-hours
+    use_emission_factor: use_resource_emission_ukw_electricity_extern
+    year: 2020
+  model: CenterResource
+- fields:
+    center: university_hospital_wuerzburg
+    name: electricity_ukw_selfmade_2020
+    name_de: Strom (Eigenproduktion)
+    name_en: Electricity (Selfmade)
+    quantity: 22000
+    resource: electricity
+    transport_emission_factor: transport_resource_emission_ukw_electricity_selfmade
+    unit: kilowatt-hours
+    use_emission_factor: use_resource_emission_ukw_electricity_selfmade
+    year: 2020
+  model: CenterResource
+- fields:
+    center: university_hospital_wuerzburg
+    name: gas_ukw_2021
+    name_de: Erdgas
+    name_en: Gas
+    quantity: 18000
+    resource: gas
+    transport_emission_factor: transport_resource_emission_ukw_gas
+    unit: liter
+    use_emission_factor: use_resource_emission_ukw_gas
+    year: 2021
+  model: CenterResource
+- fields:
+    center: university_hospital_wuerzburg
+    name: oil_ukw_2021
+    name_de: "Heiz\xF6l"
+    name_en: Oil
+    quantity: 0
+    resource: oil
+    transport_emission_factor: transport_resource_emission_ukw_oil
+    unit: cubic_meter
+    use_emission_factor: use_resource_emission_ukw_oil
+    year: 2021
+  model: CenterResource
+- fields:
+    center: university_hospital_wuerzburg
+    name: electricity_ukw_extern_2021
+    name_de: Strom (Bezug)
+    name_en: Electricity (extern)
+    quantity: 45000
+    resource: electricity
+    transport_emission_factor: transport_resource_emission_ukw_electricity_extern
+    unit: kilowatt-hours
+    use_emission_factor: use_resource_emission_ukw_electricity_extern
+    year: 2021
+  model: CenterResource
+- fields:
+    center: university_hospital_wuerzburg
+    name: electricity_ukw_selfmade_2021
+    name_de: Strom (Eigenproduktion)
+    name_en: Electricity (Selfmade)
+    quantity: 22000
+    resource: electricity
+    transport_emission_factor: transport_resource_emission_ukw_electricity_selfmade
+    unit: kilowatt-hours
+    use_emission_factor: use_resource_emission_ukw_electricity_selfmade
+    year: 2021
+  model: CenterResource
+- fields:
+    center: university_hospital_wuerzburg
+    name: gas_ukw_2022
+    name_de: Erdgas
+    name_en: Gas
+    quantity: 18500
+    resource: gas
+    transport_emission_factor: transport_resource_emission_ukw_gas
+    unit: liter
+    use_emission_factor: use_resource_emission_ukw_gas
+    year: 2022
+  model: CenterResource
+- fields:
+    center: university_hospital_wuerzburg
+    name: oil_ukw_2022
+    name_de: "Heiz\xF6l"
+    name_en: Oil
+    quantity: 0
+    resource: oil
+    transport_emission_factor: transport_resource_emission_ukw_oil
+    unit: cubic_meter
+    use_emission_factor: use_resource_emission_ukw_oil
+    year: 2022
+  model: CenterResource
+- fields:
+    center: university_hospital_wuerzburg
+    name: electricity_ukw_extern_2022
+    name_de: Strom (Bezug)
+    name_en: Electricity (extern)
+    quantity: 46000
+    resource: electricity
+    transport_emission_factor: transport_resource_emission_ukw_electricity_extern
+    unit: kilowatt-hours
+    use_emission_factor: use_resource_emission_ukw_electricity_extern
+    year: 2022
+  model: CenterResource
+- fields:
+    center: university_hospital_wuerzburg
+    name: electricity_ukw_selfmade_2022
+    name_de: Strom (Eigenproduktion)
+    name_en: Electricity (Selfmade)
+    quantity: 22000
+    resource: electricity
+    transport_emission_factor: transport_resource_emission_ukw_electricity_selfmade
+    unit: kilowatt-hours
+    use_emission_factor: use_resource_emission_ukw_electricity_selfmade
+    year: 2022
+  model: CenterResource

endoreg_db/data/center_waste/green_endoscopy_dashboard_CenterWaste.yaml

@@ -0,0 +1,48 @@
+- fields:
+    center: university_hospital_wuerzburg
+    emission_factor: waste_emission_general
+    quantity: 10156.3857142857
+    unit: kilogram
+    waste: general_waste
+    year: 2020
+  model: CenterWaste
+- fields:
+    center: university_hospital_wuerzburg
+    emission_factor: waste_emission_medical
+    quantity: 15699.9014285714
+    unit: kilogram
+    waste: medical_waste
+    year: 2020
+  model: CenterWaste
+- fields:
+    center: university_hospital_wuerzburg
+    emission_factor: waste_emission_general
+    quantity: 10156.3857142857
+    unit: kilogram
+    waste: general_waste
+    year: 2021
+  model: CenterWaste
+- fields:
+    center: university_hospital_wuerzburg
+    emission_factor: waste_emission_medical
+    quantity: 15699.9014285714
+    unit: kilogram
+    waste: medical_waste
+    year: 2021
+  model: CenterWaste
+- fields:
+    center: university_hospital_wuerzburg
+    emission_factor: waste_emission_general
+    quantity: 10156.3857142857
+    unit: kilogram
+    waste: general_waste
+    year: 2022
+  model: CenterWaste
+- fields:
+    center: university_hospital_wuerzburg
+    emission_factor: waste_emission_medical
+    quantity: 15699.9014285714
+    unit: kilogram
+    waste: medical_waste
+    year: 2022
+  model: CenterWaste

endoreg_db/data/contraindication/bleeding.yaml

@@ -0,0 +1,11 @@
+- model: endoreg_db.contraindication
+  fields:
+    name: "anticoagulation-therapeutic"
+    description: "Therapeutic anticoagulation"
+
+- model: endoreg_db.contraindication
+  fields:
+    name: "thrombocytopenia-severe"
+    description: "Thrombocyte count < 50.000/µl"
+
+

endoreg_db/data/disease/cardiovascular.yaml

@@ -0,0 +1,37 @@
+- model: endoreg_db.disease
+  fields:
+    name: "hypertension"
+    name_de: "Arterielle Hypertonie"
+    name_en: "Hypertension"
+
+- model: endoreg_db.disease
+  fields:
+    name: "coronary_artery_disease"
+    name_de: "Koronare Herzkrankheit"
+    name_en: "Coronary Artery Disease"
+
+- model: endoreg_db.disease
+  fields:
+    name: "congestive_heart_failure"
+    name_de: "Chron. Herzinsuffizienz"
+    name_en: "Congestive Heart Failure"
+
+# diabetes mellitus I
+- model: endoreg_db.disease
+  fields:
+    name: "diabetes_mellitus_I"
+    name_de: "Diabetes mellitus Typ I"
+    name_en: "Diabetes Mellitus Type I"
+
+# diabetes mellitus II
+- model: endoreg_db.disease
+  fields:
+    name: "diabetes_mellitus_II"
+    name_de: "Diabetes mellitus Typ II"
+    name_en: "Diabetes Mellitus Type II"
+
+- model: endoreg_db.disease
+  fields:
+    name: "non_valvular_atrial_fibrillation"
+    name_de: "nicht valvuläres Vorhofflimmern"
+    name_en: "non valvular Atrial Fibrillation"

endoreg_db/data/disease/hepatology.yaml

@@ -0,0 +1,5 @@
+- model: endoreg_db.disease
+  fields:
+    name: "liver_cirrhosis"
+    name_de: "Leberzirrhose"
+    name_en: "Liver Cirrhosis"

endoreg_db/data/disease/misc.yaml

@@ -0,0 +1,6 @@
+- model: endoreg_db.disease
+  fields:
+    name: "malignoma_unspecified"
+    name_de: "Malignom, nicht näher bezeichnet"
+    name_en: "Malignoma, unspecified"
+    

endoreg_db/data/disease/renal.yaml

@@ -0,0 +1,5 @@
+- model: endoreg_db.disease
+  fields:
+    name: "chronic_kidney_disease"
+    name_de: "Chronische Nierenerkrankung"
+    name_en: "Chronic Kidney Disease"

endoreg_db/data/disease_classification/chronic_kidney_disease.yaml

@@ -0,0 +1,6 @@
+- model: endoreg_db.disease_classification
+  fields:
+    name: "chronic_kideny_disease_kdigo"
+    name_de: "Chronische Nierenerkrankung (KDIGO)"
+    name_en: "Chronic Kidney Disease (KDIGO)"
+    disease: "chronic_kidney_disease"

endoreg_db/data/disease_classification/coronary_vessel_disease.yaml

@@ -0,0 +1,6 @@
+- model: endoreg_db.disease_classification
+  fields:
+    name: "coronary_artery_disease_base_classification"
+    name_de: "Koronare Gefäßerkrankung (N-Gefäß-Erkrankung)"
+    name_en: "Coronary Vessel Disease (N-Vessel Disease)"
+    disease: "coronary_artery_disease"

endoreg_db/data/disease_classification_choice/chronic_kidney_disease.yaml

@@ -0,0 +1,41 @@
+- model: endoreg_db.disease_classification_choice
+  fields:
+    name: "ckd_kdigo_1"
+    name_de: "Chronische Nierenerkrankung (KDIGO) (Stadium 1)"
+    name_en: "Chronic Kidney Disease (KDIGO) (Stage 1)"
+    disease_classification: "chronic_kideny_disease_kdigo"
+
+- model: endoreg_db.disease_classification_choice
+  fields:
+    name: "ckd_kdigo_2"
+    name_de: "Chronische Nierenerkrankung (KDIGO) (Stadium 2)"
+    name_en: "Chronic Kidney Disease (KDIGO) (Stage 2)"
+    disease_classification: "chronic_kideny_disease_kdigo"
+
+- model: endoreg_db.disease_classification_choice
+  fields:
+    name: "ckd_kdigo_3a"
+    name_de: "Chronische Nierenerkrankung (KDIGO) (Stadium 3a)"
+    name_en: "Chronic Kidney Disease (KDIGO) (Stage 3a)"
+    disease_classification: "chronic_kideny_disease_kdigo"
+
+- model: endoreg_db.disease_classification_choice
+  fields:
+    name: "ckd_kdigo_3b"
+    name_de: "Chronische Nierenerkrankung (KDIGO) (Stadium 3b)"
+    name_en: "Chronic Kidney Disease (KDIGO) (Stage 3b)"
+    disease_classification: "chronic_kideny_disease_kdigo"
+
+- model: endoreg_db.disease_classification_choice
+  fields:
+    name: "ckd_kdigo_4"
+    name_de: "Chronische Nierenerkrankung (KDIGO) (Stadium 4)"
+    name_en: "Chronic Kidney Disease (KDIGO) (Stage 4)"
+    disease_classification: "chronic_kideny_disease_kdigo"
+
+- model: endoreg_db.disease_classification_choice
+  fields:
+    name: "ckd_kdigo_5"
+    name_de: "Chronische Nierenerkrankung (KDIGO) (Stadium 5)"
+    name_en: "Chronic Kidney Disease (KDIGO) (Stage 5)"
+    disease_classification: "chronic_kideny_disease_kdigo"

endoreg_db/data/disease_classification_choice/coronary_vessel_disease.yaml

@@ -0,0 +1,20 @@
+- model: endoreg_db.disease_classification_choice
+  fields:
+    name: "khk_1_ge"
+    name_de: "Koronare Gefäßerkrankung (1-Gefäß-Erkrankung)"
+    name_en: "Coronary Vessel Disease (1-Vessel Disease)"
+    disease_classification: "coronary_artery_disease_base_classification"
+
+- model: endoreg_db.disease_classification_choice
+  fields:
+    name: "khk_2_ge"
+    name_de: "Koronare Gefäßerkrankung (2-Gefäß-Erkrankung)"
+    name_en: "Coronary Vessel Disease (2-Vessel Disease)"
+    disease_classification: "coronary_artery_disease_base_classification"
+
+- model: endoreg_db.disease_classification_choice
+  fields:
+    name: "khk_3_ge"
+    name_de: "Koronare Gefäßerkrankung (3-Gefäß-Erkrankung)"
+    name_en: "Coronary Vessel Disease (3-Vessel Disease)"
+    disease_classification: "coronary_artery_disease_base_classification"

endoreg_db/data/distribution/date/patient.yaml

@@ -0,0 +1,7 @@
+- model: endoreg_db.date_value_distribution
+  fields:
+    name: "age-screening_colo_population"
+    distribution_type: "uniform"
+    mode: "timedelta"
+    timedelta_days_min: 18250
+    timedelta_days_max: 32485

endoreg_db/data/distribution/numeric/data.yaml

@@ -0,0 +1,14 @@
+- model: endoreg_db.numeric_value_distribution
+  fields:
+    name: "uniform_default"
+    distribution_type: "uniform"
+    min_descriptor: "min_x_1"
+    max_descriptor: "max_x_1"
+
+
+- model: endoreg_db.numeric_value_distribution
+  fields:
+    name: "uniform_high_x1.5"
+    distribution_type: "uniform"
+    min_descriptor: "max_x_1"
+    max_descriptor: "max_x_1.5"

endoreg_db/data/distribution/single_categorical/patient.yaml

@@ -0,0 +1,7 @@
+- model: endoreg_db.single_categorical_value_distribution
+  fields:
+    name: "gender_random"
+    categories: {
+      "male": 0.5,
+      "female": 0.5
+    }

endoreg_db/data/emission_factor/green_endoscopy_dashboard_EmissionFactor.yaml

@@ -0,0 +1,132 @@
+- fields:
+    name: material_emission_cardboard
+    unit: kilogram
+    value: 0.828
+  model: EmissionFactor
+- fields:
+    name: material_emission_foil
+    unit: kilogram
+    value: 2.574
+  model: EmissionFactor
+- fields:
+    name: material_emission_gold
+    unit: kilogram
+    value: 4.018
+  model: EmissionFactor
+- fields:
+    name: material_emission_metal
+    unit: kilogram
+    value: 4.018
+  model: EmissionFactor
+- fields:
+    name: material_emission_nickel
+    unit: kilogram
+    value: 4.018
+  model: EmissionFactor
+- fields:
+    name: material_emission_paper
+    unit: kilogram
+    value: 0.919
+  model: EmissionFactor
+- fields:
+    name: material_emission_paper_coated
+    unit: kilogram
+    value: 2.0175
+  model: EmissionFactor
+- fields:
+    name: material_emission_plastic
+    unit: kilogram
+    value: 3.116
+  model: EmissionFactor
+- fields:
+    name: material_emission_plastic_coated
+    unit: kilogram
+    value: 3.116
+  model: EmissionFactor
+- fields:
+    name: material_emission_silicone
+    unit: kilogram
+    value: 2.0
+  model: EmissionFactor
+- fields:
+    name: material_emission_steel
+    unit: kilogram
+    value: 4.018
+  model: EmissionFactor
+- fields:
+    name: material_emission_tantal
+    unit: kilogram
+    value: 4.018
+  model: EmissionFactor
+- fields:
+    name: material_emission_textile
+    unit: kilogram
+    value: 2.0
+  model: EmissionFactor
+- fields:
+    name: material_emission_titan
+    unit: kilogram
+    value: 4.018
+  model: EmissionFactor
+- fields:
+    name: use_resource_emission_ukw_gas
+    unit: liter
+    value: 2.01574
+  model: EmissionFactor
+- fields:
+    name: use_resource_emission_ukw_oil
+    unit: cubic_meter
+    value: 3.17522
+  model: EmissionFactor
+- fields:
+    name: use_resource_emission_ukw_electricity_extern
+    unit: kilowatt-hours
+    value: 0.0
+  model: EmissionFactor
+- fields:
+    name: use_resource_emission_ukw_electricity_selfmade
+    unit: kilowatt-hours
+    value: 0.0
+  model: EmissionFactor
+- fields:
+    name: transport_resource_emission_ukw_gas
+    unit: liter
+    value: 0.3434
+  model: EmissionFactor
+- fields:
+    name: transport_resource_emission_ukw_oil
+    unit: cubic_meter
+    value: 0.69723
+  model: EmissionFactor
+- fields:
+    name: transport_resource_emission_ukw_electricity_extern
+    unit: kilowatt-hours
+    value: 0.05048
+  model: EmissionFactor
+- fields:
+    name: transport_resource_emission_ukw_electricity_selfmade
+    unit: kilowatt-hours
+    value: 0.0
+  model: EmissionFactor
+
+- fields:
+    name: transport_product_emission_generic_europe
+    unit: "kilogram"
+    value: 0.13213
+  model: EmissionFactor
+- fields:
+    name: transport_product_emission_generic_overseas
+    unit: "kilogram"
+    value: 1.308373
+  model: EmissionFactor
+- fields:
+    name: waste_emission_medical
+    unit: "kilogram"
+    value: 0.0212801937984496
+  model: EmissionFactor
+
+- fields:
+    name: waste_emission_general
+    unit: "kilogram"
+    value: 0.0212801937984496
+  model: EmissionFactor

endoreg_db/data/endoscope/data.yaml

@@ -0,0 +1,93 @@
+- model: endoreg_db.endoscope
+  fields:
+    name: "default_colonoscope_ukw"
+    name_de: "Standard Koloskop UKW"
+    name_en: "Default Colonoscope UKW"
+    sn: "1"
+    center: "university_hospital_wuerzburg"
+    endoscope_type: "colonoscope"
+
+- model: endoreg_db.endoscope
+  fields:
+    name: "default_gastroscope_ukw"
+    name_de: "Standard Gastroskop UKW"
+    name_en: "Default Gastroscope UKW"
+    sn: "2"
+    center: "university_hospital_wuerzburg"
+    endoscope_type: "gastroscope"
+
+- model: endoreg_db.endoscope
+  fields:
+    name: "default_colonoscope_rbk"
+    name_de: "Standard Koloskop RBK"
+    name_en: "Default Colonoscope RBK"
+    sn: "3"
+    center: "rbk_stuttgart"
+    endoscope_type: "colonoscope"
+
+- model: endoreg_db.endoscope
+  fields:
+    name: "default_gastroscope_rbk"
+    name_de: "Standard Gastroskop RBK"
+    name_en: "Default Gastroscope RBK"
+    sn: "4"
+    center: "rbk_stuttgart"
+    endoscope_type: "gastroscope"
+
+- model: endoreg_db.endoscope
+  fields:
+    name: "default_colonoscope_bbk"
+    name_de: "Standard Koloskop BBK"
+    name_en: "Default Colonoscope BBK"
+    sn: "5"
+    center: "bbk_regensburg"
+    endoscope_type: "colonoscope"
+
+- model: endoreg_db.endoscope
+  fields:
+    name: "default_gastroscope_bbk"
+    name_de: "Standard Gastroskop BBK"
+    name_en: "Default Gastroscope BBK"
+    sn: "6"
+    center: "bbk_regensburg"
+    endoscope_type: "gastroscope"
+
+# UKE
+- model: endoreg_db.endoscope
+  fields:
+    name: "default_colonoscope_uke"
+    name_de: "Standard Koloskop UKE"
+    name_en: "Default Colonoscope UKE"
+    sn: "7"
+    center: "uke_hamburg"
+    endoscope_type: "colonoscope"
+
+- model: endoreg_db.endoscope
+  fields:
+    name: "default_gastroscope_uke"
+    name_de: "Standard Gastroskop UKE"
+    name_en: "Default Gastroscope UKE"
+    sn: "8"
+    center: "uke_hamburg"
+    endoscope_type: "gastroscope"
+
+# rkh_ludwigsburg
+- model: endoreg_db.endoscope
+  fields:
+    name: "default_colonoscope_rkh"
+    name_de: "Standard Koloskop RKH"
+    name_en: "Default Colonoscope RKH"
+    sn: "9"
+    center: "rkh_ludwigsburg"
+    endoscope_type: "colonoscope"
+
+- model: endoreg_db.endoscope 
+  fields:
+    name: "default_gastroscope_rkh"
+    name_de: "Standard Gastroskop RKH"
+    name_en: "Default Gastroscope RKH"
+    sn: "10"
+    center: "rkh_ludwigsburg"
+    endoscope_type: "gastroscope"
+
+

endoreg_db/data/endoscope_type/data.yaml

@@ -0,0 +1,11 @@
+- model: endoreg_db.endoscope_type
+  fields:
+    name: "gastroscope"
+    name_de: "Gastroskop"
+    name_en: "Gastroscope"
+
+- model: endoreg_db.endoscope_type
+  fields:
+    name: "colonoscope"
+    name_de: "Koloskop"
+    name_en: "Colonoscope"

endoreg_db/data/endoscopy_processor/data.yaml

@@ -0,0 +1,47 @@
+- model: endoreg_db.endoscopy_processor
+  fields:
+    name: "olympus_cv_1500"
+    image_width: 1920
+    image_height: 1080
+
+    endoscope_image_x: 550
+    endoscope_image_y: 0
+    endoscope_image_width: 1350
+    endoscope_image_height: 1080
+
+    examination_date_x: 0
+    examination_date_y: 0
+    examination_date_width: 390
+    examination_date_height: 40
+
+    examination_time_x: 240
+    examination_time_y: 7
+    examination_time_width: 115
+    examination_time_height: 35
+
+    patient_first_name_x: 80
+    patient_first_name_y: 110
+    patient_first_name_width: 440
+    patient_first_name_height: 33
+
+    patient_last_name_x: 70
+    patient_last_name_y: 83
+    patient_last_name_width: 450
+    patient_last_name_height: 27
+
+    patient_dob_x: 70
+    patient_dob_y: 180
+    patient_dob_width: 160
+    patient_dob_height: 50
+
+    endoscope_type_x: 70
+    endoscope_type_y: 630
+    endoscope_type_width: 280
+    endoscope_type_height: 35
+
+    endoscope_sn_x: 70
+    endoscope_sn_y: 670
+    endoscope_sn_width: 280
+    endoscope_sn_height: 35
+
+    

endoreg_db/data/event/cardiology.yaml

@@ -0,0 +1,28 @@
+- model: endoreg_db.event
+  fields:
+    name: "coro_des_implantation"
+    name_de: "Koronarstent-Implantation (DES)"
+    name_en: "Coronary Stent Implantation (DES)"
+- model: endoreg_db.event
+  fields:
+    name: "coro_bms_implantation"
+    name_de: "Koronarstent-Implantation (BMS)"
+    name_en: "Coronary Stent Implantation (BMS)"
+- model: endoreg_db.event
+  fields:
+    name: "complication_coro_stent_thrombosis"
+    name_de: "Komplikation: Koronar Stent Thrombose"
+    name_en: "Complication: Coronary Stent Thrombosis"
+
+- model: endoreg_db.event
+  fields:
+    name: "pulmonary_embolism"
+    name_de: "Lungenembolie"
+    name_en: "Pulmonary Embolism"
+
+- model: endoreg_db.event
+  fields:
+    name: "deep_vein_thrombosis"
+    name_de: "Tiefe Beinvenenthrombose"
+    name_en: "Deep Vein Thrombosis"
+