endoreg-db 0.4.5__py3-none-any.whl → 0.8.6.3__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- endoreg_db/admin.py +90 -1
- endoreg_db/api_urls.py +4 -0
- endoreg_db/apps.py +12 -0
- endoreg_db/assets/dummy_model.ckpt +1 -0
- endoreg_db/codemods/readme.md +88 -0
- endoreg_db/codemods/rename_datetime_fields.py +92 -0
- endoreg_db/config/env.py +101 -0
- endoreg_db/data/__init__.py +76 -4
- endoreg_db/data/ai_model/data.yaml +7 -0
- endoreg_db/data/{label → ai_model_label}/label/data.yaml +27 -1
- endoreg_db/data/ai_model_label/label/polyp_classification.yaml +52 -0
- endoreg_db/data/ai_model_label/label-set/data.yaml +40 -0
- endoreg_db/data/ai_model_label/label-set/polyp_classifications.yaml +25 -0
- endoreg_db/data/ai_model_meta/default_multilabel_classification.yaml +27 -0
- endoreg_db/data/ai_model_video_segmentation_label/base_segmentation.yaml +176 -0
- endoreg_db/data/ai_model_video_segmentation_labelset/data.yaml +20 -0
- endoreg_db/data/center/data.yaml +40 -9
- endoreg_db/data/center_shift/ukw.yaml +9 -0
- endoreg_db/data/contraindication/bleeding.yaml +11 -0
- endoreg_db/data/db_summary.csv +58 -0
- endoreg_db/data/db_summary.xlsx +0 -0
- endoreg_db/data/disease/misc.yaml +1 -2
- endoreg_db/data/disease_classification/chronic_kidney_disease.yaml +2 -2
- endoreg_db/data/disease_classification_choice/chronic_kidney_disease.yaml +6 -6
- endoreg_db/data/distribution/numeric/data.yaml +14 -0
- endoreg_db/data/endoscope/data.yaml +93 -0
- endoreg_db/data/endoscopy_processor/data.yaml +3 -0
- endoreg_db/data/event/cardiology.yaml +0 -13
- endoreg_db/data/examination/examinations/data.yaml +34 -28
- endoreg_db/data/examination/type/data.yaml +12 -0
- endoreg_db/data/examination_indication/endoscopy.yaml +424 -0
- endoreg_db/data/examination_indication_classification/endoscopy.yaml +160 -0
- endoreg_db/data/examination_indication_classification_choice/endoscopy.yaml +101 -0
- endoreg_db/data/examination_requirement_set/colonoscopy.yaml +15 -0
- endoreg_db/data/finding/anatomy_colon.yaml +128 -0
- endoreg_db/data/finding/colonoscopy.yaml +40 -0
- endoreg_db/data/finding/colonoscopy_bowel_prep.yaml +56 -0
- endoreg_db/data/finding/complication.yaml +16 -0
- endoreg_db/data/finding/data.yaml +105 -0
- endoreg_db/data/finding/examination_setting.yaml +16 -0
- endoreg_db/data/finding/medication_related.yaml +18 -0
- endoreg_db/data/finding/outcome.yaml +12 -0
- endoreg_db/data/finding_classification/colonoscopy_bowel_preparation.yaml +95 -0
- endoreg_db/data/finding_classification/colonoscopy_jnet.yaml +22 -0
- endoreg_db/data/finding_classification/colonoscopy_kudo.yaml +25 -0
- endoreg_db/data/finding_classification/colonoscopy_lesion_circularity.yaml +20 -0
- endoreg_db/data/finding_classification/colonoscopy_lesion_planarity.yaml +24 -0
- endoreg_db/data/finding_classification/colonoscopy_lesion_size.yaml +68 -0
- endoreg_db/data/finding_classification/colonoscopy_lesion_surface.yaml +20 -0
- endoreg_db/data/finding_classification/colonoscopy_location.yaml +80 -0
- endoreg_db/data/finding_classification/colonoscopy_lst.yaml +21 -0
- endoreg_db/data/finding_classification/colonoscopy_nice.yaml +20 -0
- endoreg_db/data/finding_classification/colonoscopy_paris.yaml +26 -0
- endoreg_db/data/finding_classification/colonoscopy_sano.yaml +22 -0
- endoreg_db/data/finding_classification/colonoscopy_summary.yaml +53 -0
- endoreg_db/data/finding_classification/complication_generic.yaml +25 -0
- endoreg_db/data/finding_classification/examination_setting_generic.yaml +40 -0
- endoreg_db/data/finding_classification/histology_colo.yaml +51 -0
- endoreg_db/data/finding_classification/intervention_required.yaml +26 -0
- endoreg_db/data/finding_classification/medication_related.yaml +23 -0
- endoreg_db/data/finding_classification/visualized.yaml +33 -0
- endoreg_db/data/finding_classification_choice/bowel_preparation.yaml +78 -0
- endoreg_db/data/finding_classification_choice/colon_lesion_circularity_default.yaml +32 -0
- endoreg_db/data/finding_classification_choice/colon_lesion_jnet.yaml +15 -0
- endoreg_db/data/finding_classification_choice/colon_lesion_kudo.yaml +23 -0
- endoreg_db/data/finding_classification_choice/colon_lesion_lst.yaml +15 -0
- endoreg_db/data/finding_classification_choice/colon_lesion_nice.yaml +17 -0
- endoreg_db/data/finding_classification_choice/colon_lesion_paris.yaml +57 -0
- endoreg_db/data/finding_classification_choice/colon_lesion_planarity_default.yaml +49 -0
- endoreg_db/data/finding_classification_choice/colon_lesion_sano.yaml +14 -0
- endoreg_db/data/finding_classification_choice/colon_lesion_surface_intact_default.yaml +36 -0
- endoreg_db/data/finding_classification_choice/colonoscopy_location.yaml +229 -0
- endoreg_db/data/finding_classification_choice/colonoscopy_not_complete_reason.yaml +19 -0
- endoreg_db/data/finding_classification_choice/colonoscopy_size.yaml +82 -0
- endoreg_db/data/finding_classification_choice/colonoscopy_summary_worst_finding.yaml +15 -0
- endoreg_db/data/finding_classification_choice/complication_generic_types.yaml +15 -0
- endoreg_db/data/finding_classification_choice/examination_setting_generic_types.yaml +15 -0
- endoreg_db/data/finding_classification_choice/histology.yaml +24 -0
- endoreg_db/data/finding_classification_choice/histology_polyp.yaml +20 -0
- endoreg_db/data/finding_classification_choice/outcome.yaml +19 -0
- endoreg_db/data/finding_classification_choice/yes_no_na.yaml +11 -0
- endoreg_db/data/finding_classification_type/colonoscopy_basic.yaml +48 -0
- endoreg_db/data/finding_intervention/endoscopy.yaml +43 -0
- endoreg_db/data/finding_intervention/endoscopy_colonoscopy.yaml +168 -0
- endoreg_db/data/finding_intervention/endoscopy_egd.yaml +128 -0
- endoreg_db/data/finding_intervention/endoscopy_ercp.yaml +32 -0
- endoreg_db/data/finding_intervention/endoscopy_eus_lower.yaml +9 -0
- endoreg_db/data/finding_intervention/endoscopy_eus_upper.yaml +36 -0
- endoreg_db/data/finding_intervention_type/endoscopy.yaml +15 -0
- endoreg_db/data/finding_morphology_classification_type/colonoscopy.yaml +79 -0
- endoreg_db/data/finding_type/data.yaml +43 -0
- endoreg_db/data/gender/data.yaml +24 -0
- endoreg_db/data/information_source/annotation.yaml +6 -0
- endoreg_db/data/information_source/endoscopy_guidelines.yaml +7 -0
- endoreg_db/data/information_source/prediction.yaml +7 -0
- endoreg_db/data/information_source_type/data.yaml +8 -0
- endoreg_db/data/lab_value/cardiac_enzymes.yaml +7 -1
- endoreg_db/data/lab_value/coagulation.yaml +6 -1
- endoreg_db/data/lab_value/electrolytes.yaml +39 -1
- endoreg_db/data/lab_value/gastrointestinal_function.yaml +12 -0
- endoreg_db/data/lab_value/hematology.yaml +17 -2
- endoreg_db/data/lab_value/hormones.yaml +6 -0
- endoreg_db/data/lab_value/lipids.yaml +12 -3
- endoreg_db/data/lab_value/misc.yaml +48 -2
- endoreg_db/data/lab_value/renal_function.yaml +2 -1
- endoreg_db/data/lx_client_tag/base.yaml +54 -0
- endoreg_db/data/lx_client_type/base.yaml +30 -0
- endoreg_db/data/lx_permission/base.yaml +24 -0
- endoreg_db/data/lx_permission/endoreg.yaml +52 -0
- endoreg_db/data/medication/anticoagulation.yaml +5 -5
- endoreg_db/data/medication/tah.yaml +5 -5
- endoreg_db/data/medication_indication/anticoagulation.yaml +48 -53
- endoreg_db/data/medication_intake_time/base.yaml +4 -4
- endoreg_db/data/names_first/first_names.yaml +54 -0
- endoreg_db/data/names_last/last_names.yaml +51 -0
- endoreg_db/data/network_device/data.yaml +30 -0
- endoreg_db/data/organ/data.yaml +29 -0
- endoreg_db/data/pdf_type/data.yaml +27 -9
- endoreg_db/data/qualification/endoscopy.yaml +36 -0
- endoreg_db/data/qualification/m2.yaml +39 -0
- endoreg_db/data/qualification/outpatient_clinic.yaml +35 -0
- endoreg_db/data/qualification/sonography.yaml +36 -0
- endoreg_db/data/qualification_type/base.yaml +29 -0
- endoreg_db/data/report_reader_flag/rkh-histology-generic.yaml +10 -0
- endoreg_db/data/report_reader_flag/ukw-examination-generic.yaml +4 -0
- endoreg_db/data/report_reader_flag/ukw-histology-generic.yaml +5 -0
- endoreg_db/data/requirement/age.yaml +26 -0
- endoreg_db/data/requirement/colonoscopy_baseline_austria.yaml +45 -0
- endoreg_db/data/requirement/disease_cardiovascular.yaml +79 -0
- endoreg_db/data/requirement/disease_classification_choice_cardiovascular.yaml +41 -0
- endoreg_db/data/requirement/disease_hepatology.yaml +12 -0
- endoreg_db/data/requirement/disease_misc.yaml +12 -0
- endoreg_db/data/requirement/disease_renal.yaml +96 -0
- endoreg_db/data/requirement/endoscopy_bleeding_risk.yaml +59 -0
- endoreg_db/data/requirement/event_cardiology.yaml +251 -0
- endoreg_db/data/requirement/event_requirements.yaml +145 -0
- endoreg_db/data/requirement/finding_colon_polyp.yaml +50 -0
- endoreg_db/data/requirement/gender.yaml +25 -0
- endoreg_db/data/requirement/lab_value.yaml +441 -0
- endoreg_db/data/requirement/medication.yaml +93 -0
- endoreg_db/data/requirement_operator/age.yaml +13 -0
- endoreg_db/data/requirement_operator/lab_operators.yaml +129 -0
- endoreg_db/data/requirement_operator/model_operators.yaml +96 -0
- endoreg_db/data/requirement_set/01_endoscopy_generic.yaml +48 -0
- endoreg_db/data/requirement_set/colonoscopy_austria_screening.yaml +57 -0
- endoreg_db/data/requirement_set/endoscopy_bleeding_risk.yaml +52 -0
- endoreg_db/data/requirement_set_type/data.yaml +20 -0
- endoreg_db/data/requirement_type/requirement_types.yaml +165 -0
- endoreg_db/data/risk/bleeding.yaml +26 -0
- endoreg_db/data/risk/thrombosis.yaml +37 -0
- endoreg_db/data/risk_type/data.yaml +27 -0
- endoreg_db/data/setup_config.yaml +38 -0
- endoreg_db/data/shift/endoscopy.yaml +21 -0
- endoreg_db/data/shift_type/base.yaml +35 -0
- endoreg_db/data/tag/requirement_set_tags.yaml +11 -0
- endoreg_db/data/unit/concentration.yaml +23 -0
- endoreg_db/data/unit/time.yaml +36 -1
- endoreg_db/exceptions.py +19 -0
- endoreg_db/forms/__init__.py +3 -1
- endoreg_db/forms/examination_form.py +11 -0
- endoreg_db/forms/patient_finding_intervention_form.py +18 -0
- endoreg_db/forms/patient_form.py +27 -0
- endoreg_db/forms/questionnaires/__init__.py +1 -1
- endoreg_db/forms/questionnaires/tto_questionnaire.py +19 -19
- endoreg_db/helpers/count_db.py +45 -0
- endoreg_db/helpers/data_loader.py +208 -0
- endoreg_db/helpers/default_objects.py +378 -0
- endoreg_db/helpers/download_segmentation_model.py +31 -0
- endoreg_db/helpers/interact.py +6 -0
- endoreg_db/helpers/test_video_helper.py +119 -0
- endoreg_db/logger_conf.py +140 -0
- endoreg_db/management/__init__.py +1 -0
- endoreg_db/management/commands/__init__.py +1 -0
- endoreg_db/management/commands/anonymize_video.py +0 -0
- endoreg_db/management/commands/check_auth.py +125 -0
- endoreg_db/management/commands/create_model_meta_from_huggingface.py +115 -0
- endoreg_db/management/commands/create_multilabel_model_meta.py +214 -0
- endoreg_db/management/commands/fix_missing_patient_data.py +172 -0
- endoreg_db/management/commands/fix_video_paths.py +165 -0
- endoreg_db/management/commands/import_fallback_video.py +203 -0
- endoreg_db/management/commands/import_report.py +298 -0
- endoreg_db/management/commands/import_video.py +423 -0
- endoreg_db/management/commands/import_video_with_classification.py +367 -0
- endoreg_db/management/commands/init_default_ai_model.py +112 -0
- endoreg_db/management/commands/load_ai_model_data.py +58 -26
- endoreg_db/management/commands/load_ai_model_label_data.py +59 -0
- endoreg_db/management/commands/load_base_db_data.py +174 -118
- endoreg_db/management/commands/load_center_data.py +46 -21
- endoreg_db/management/commands/{load_logging_data.py → load_contraindication_data.py} +4 -2
- endoreg_db/management/commands/load_disease_data.py +29 -7
- endoreg_db/management/commands/{load_endoscope_type_data.py → load_endoscope_data.py} +30 -7
- endoreg_db/management/commands/load_examination_indication_data.py +86 -0
- endoreg_db/management/commands/load_finding_data.py +128 -0
- endoreg_db/management/commands/load_green_endoscopy_wuerzburg_data.py +0 -1
- endoreg_db/management/commands/load_information_source.py +13 -7
- endoreg_db/management/commands/load_lab_value_data.py +3 -3
- endoreg_db/management/commands/load_medication_data.py +83 -21
- endoreg_db/management/commands/load_name_data.py +37 -0
- endoreg_db/management/commands/{load_medication_intake_time_data.py → load_organ_data.py} +7 -5
- endoreg_db/management/commands/load_qualification_data.py +59 -0
- endoreg_db/management/commands/load_requirement_data.py +180 -0
- endoreg_db/management/commands/load_risk_data.py +56 -0
- endoreg_db/management/commands/load_shift_data.py +60 -0
- endoreg_db/management/commands/load_tag_data.py +57 -0
- endoreg_db/management/commands/register_ai_model.py +1 -1
- endoreg_db/management/commands/setup_endoreg_db.py +381 -0
- endoreg_db/management/commands/start_filewatcher.py +106 -0
- endoreg_db/management/commands/storage_management.py +548 -0
- endoreg_db/management/commands/summarize_db_content.py +189 -0
- endoreg_db/management/commands/validate_video.py +204 -0
- endoreg_db/management/commands/validate_video_files.py +161 -0
- endoreg_db/management/commands/video_validation.py +22 -0
- endoreg_db/mermaid/Overall_flow_patient_finding_intervention.md +10 -0
- endoreg_db/mermaid/anonymized_image_annotation.md +20 -0
- endoreg_db/mermaid/binary_classification_annotation.md +50 -0
- endoreg_db/mermaid/classification.md +8 -0
- endoreg_db/mermaid/examination.md +8 -0
- endoreg_db/mermaid/findings.md +7 -0
- endoreg_db/mermaid/image_classification.md +28 -0
- endoreg_db/mermaid/interventions.md +8 -0
- endoreg_db/mermaid/morphology.md +8 -0
- endoreg_db/mermaid/patient_creation.md +14 -0
- endoreg_db/mermaid/video_segmentation_annotation.md +17 -0
- endoreg_db/migrations/0001_initial.py +1234 -944
- endoreg_db/migrations/0002_add_video_correction_models.py +52 -0
- endoreg_db/migrations/0003_add_center_display_name.py +30 -0
- endoreg_db/models/__init__.py +339 -53
- endoreg_db/models/administration/__init__.py +116 -0
- endoreg_db/models/administration/ai/__init__.py +9 -0
- endoreg_db/models/administration/ai/active_model.py +35 -0
- endoreg_db/models/administration/ai/ai_model.py +156 -0
- endoreg_db/models/{ai_model → administration/ai}/model_type.py +19 -4
- endoreg_db/models/administration/case/__init__.py +19 -0
- endoreg_db/models/administration/case/case.py +114 -0
- endoreg_db/models/{case_template → administration/case/case_template}/__init__.py +10 -1
- endoreg_db/models/{case_template → administration/case/case_template}/case_template.py +60 -16
- endoreg_db/models/{case_template → administration/case/case_template}/case_template_rule.py +6 -13
- endoreg_db/models/{case_template → administration/case/case_template}/case_template_rule_value.py +21 -8
- endoreg_db/models/{case_template → administration/case/case_template}/case_template_type.py +1 -3
- endoreg_db/models/{center → administration/center}/__init__.py +9 -0
- endoreg_db/models/administration/center/center.py +67 -0
- endoreg_db/models/administration/center/center_product.py +64 -0
- endoreg_db/models/administration/center/center_resource.py +49 -0
- endoreg_db/models/administration/center/center_shift.py +88 -0
- endoreg_db/models/administration/center/center_waste.py +30 -0
- endoreg_db/models/administration/permissions/__init__.py +44 -0
- endoreg_db/models/administration/person/__init__.py +24 -0
- endoreg_db/models/administration/person/employee/__init__.py +3 -0
- endoreg_db/models/administration/person/employee/employee.py +35 -0
- endoreg_db/models/administration/person/employee/employee_qualification.py +39 -0
- endoreg_db/models/administration/person/employee/employee_type.py +42 -0
- endoreg_db/models/administration/person/examiner/__init__.py +4 -0
- endoreg_db/models/administration/person/examiner/examiner.py +54 -0
- endoreg_db/models/administration/person/names/__init__.py +0 -0
- endoreg_db/models/{persons → administration/person/names}/first_name.py +1 -1
- endoreg_db/models/{persons → administration/person/names}/last_name.py +2 -3
- endoreg_db/models/administration/person/patient/__init__.py +5 -0
- endoreg_db/models/administration/person/patient/patient.py +460 -0
- endoreg_db/models/administration/person/profession/__init__.py +24 -0
- endoreg_db/models/administration/person/user/__init__.py +5 -0
- endoreg_db/models/administration/person/user/portal_user_information.py +37 -0
- endoreg_db/models/administration/product/__init__.py +14 -0
- endoreg_db/models/administration/product/product.py +97 -0
- endoreg_db/models/administration/product/product_group.py +39 -0
- endoreg_db/models/administration/product/product_material.py +54 -0
- endoreg_db/models/{product → administration/product}/product_weight.py +21 -0
- endoreg_db/models/{product → administration/product}/reference_product.py +44 -13
- endoreg_db/models/administration/qualification/__init__.py +7 -0
- endoreg_db/models/administration/qualification/qualification.py +37 -0
- endoreg_db/models/administration/qualification/qualification_type.py +35 -0
- endoreg_db/models/administration/shift/__init__.py +9 -0
- endoreg_db/models/administration/shift/scheduled_days.py +69 -0
- endoreg_db/models/administration/shift/shift.py +51 -0
- endoreg_db/models/administration/shift/shift_type.py +108 -0
- endoreg_db/models/label/__init__.py +24 -1
- endoreg_db/models/label/annotation/__init__.py +12 -0
- endoreg_db/models/label/annotation/image_classification.py +84 -0
- endoreg_db/models/label/annotation/video_segmentation_annotation.py +66 -0
- endoreg_db/models/label/label.py +53 -54
- endoreg_db/models/label/label_set.py +53 -0
- endoreg_db/models/label/label_type.py +29 -0
- endoreg_db/models/label/label_video_segment/__init__.py +3 -0
- endoreg_db/models/label/label_video_segment/_create_from_video.py +41 -0
- endoreg_db/models/label/label_video_segment/label_video_segment.py +511 -0
- endoreg_db/models/label/video_segmentation_label.py +31 -0
- endoreg_db/models/label/video_segmentation_labelset.py +27 -0
- endoreg_db/models/media/__init__.py +16 -0
- endoreg_db/models/media/frame/__init__.py +3 -0
- endoreg_db/models/media/frame/frame.py +111 -0
- endoreg_db/models/media/pdf/__init__.py +11 -0
- endoreg_db/models/media/pdf/raw_pdf.py +757 -0
- endoreg_db/models/media/pdf/report_file.py +162 -0
- endoreg_db/models/media/pdf/report_reader/__init__.py +7 -0
- endoreg_db/models/media/pdf/report_reader/report_reader_config.py +77 -0
- endoreg_db/models/media/video/__init__.py +8 -0
- endoreg_db/models/media/video/create_from_file.py +358 -0
- endoreg_db/models/media/video/pipe_1.py +213 -0
- endoreg_db/models/media/video/pipe_2.py +105 -0
- endoreg_db/models/media/video/refactor_plan.md +0 -0
- endoreg_db/models/media/video/video_file.py +825 -0
- endoreg_db/models/media/video/video_file_ai.py +443 -0
- endoreg_db/models/media/video/video_file_anonymize.py +349 -0
- endoreg_db/models/media/video/video_file_frames/__init__.py +47 -0
- endoreg_db/models/media/video/video_file_frames/_bulk_create_frames.py +22 -0
- endoreg_db/models/media/video/video_file_frames/_create_frame_object.py +23 -0
- endoreg_db/models/media/video/video_file_frames/_delete_frames.py +104 -0
- endoreg_db/models/media/video/video_file_frames/_extract_frames.py +174 -0
- endoreg_db/models/media/video/video_file_frames/_get_frame.py +28 -0
- endoreg_db/models/media/video/video_file_frames/_get_frame_number.py +27 -0
- endoreg_db/models/media/video/video_file_frames/_get_frame_path.py +20 -0
- endoreg_db/models/media/video/video_file_frames/_get_frame_paths.py +27 -0
- endoreg_db/models/media/video/video_file_frames/_get_frame_range.py +34 -0
- endoreg_db/models/media/video/video_file_frames/_get_frames.py +27 -0
- endoreg_db/models/media/video/video_file_frames/_initialize_frames.py +129 -0
- endoreg_db/models/media/video/video_file_frames/_manage_frame_range.py +141 -0
- endoreg_db/models/media/video/video_file_frames/_mark_frames_extracted_status.py +65 -0
- endoreg_db/models/media/video/video_file_frames.py +0 -0
- endoreg_db/models/media/video/video_file_io.py +168 -0
- endoreg_db/models/media/video/video_file_meta/__init__.py +22 -0
- endoreg_db/models/media/video/video_file_meta/get_crop_template.py +45 -0
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- endoreg_db/models/medical/hardware/endoscope.py +65 -0
- endoreg_db/models/{hardware → medical/hardware}/endoscopy_processor.py +68 -29
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- endoreg_db/models/{rules → rule}/rule_type.py +0 -2
- endoreg_db/models/{rules → rule}/ruleset.py +0 -2
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- endoreg_db/views/pdf/pdf_stream.py +187 -0
- endoreg_db/views/pdf/reimport.py +177 -0
- endoreg_db/views/report/__init__.py +9 -0
- endoreg_db/views/report/report_list.py +112 -0
- endoreg_db/views/report/report_with_secure_url.py +28 -0
- endoreg_db/views/report/start_examination.py +7 -0
- endoreg_db/views/requirement/__init__.py +10 -0
- endoreg_db/views/requirement/evaluate.py +279 -0
- endoreg_db/views/requirement/lookup.py +367 -0
- endoreg_db/views/requirement/lookup_store.py +252 -0
- endoreg_db/views/requirement_lookup/lookup.py +0 -0
- endoreg_db/views/requirement_lookup/lookup_store.py +0 -0
- endoreg_db/views/stats/__init__.py +13 -0
- endoreg_db/views/stats/stats_views.py +229 -0
- endoreg_db/views/video/__init__.py +59 -0
- endoreg_db/views/video/correction.py +530 -0
- endoreg_db/views/video/reimport.py +195 -0
- endoreg_db/views/video/segmentation.py +274 -0
- endoreg_db/views/video/task_status.py +49 -0
- endoreg_db/views/video/timeline.py +46 -0
- endoreg_db/views/video/video_analyze.py +52 -0
- endoreg_db/views/video/video_apply_mask.py +48 -0
- endoreg_db/views/video/video_correction.py +21 -0
- endoreg_db/views/video/video_download_processed.py +58 -0
- endoreg_db/views/video/video_examination_viewset.py +242 -0
- endoreg_db/views/video/video_meta.py +29 -0
- endoreg_db/views/video/video_processing_history.py +24 -0
- endoreg_db/views/video/video_remove_frames.py +48 -0
- endoreg_db/views/video/video_stream.py +306 -0
- endoreg_db/views.py +0 -3
- endoreg_db-0.8.6.3.dist-info/METADATA +383 -0
- endoreg_db-0.8.6.3.dist-info/RECORD +793 -0
- {endoreg_db-0.4.5.dist-info → endoreg_db-0.8.6.3.dist-info}/WHEEL +1 -1
- endoreg_db/data/active_model/data.yaml +0 -3
- endoreg_db/data/agl_service/data.yaml +0 -19
- endoreg_db/data/label/label-set/data.yaml +0 -18
- endoreg_db/management/commands/_load_model_template.py +0 -41
- endoreg_db/management/commands/delete_all.py +0 -18
- endoreg_db/management/commands/delete_legacy_images.py +0 -19
- endoreg_db/management/commands/delete_legacy_videos.py +0 -17
- endoreg_db/management/commands/extract_legacy_video_frames.py +0 -18
- endoreg_db/management/commands/fetch_legacy_image_dataset.py +0 -32
- endoreg_db/management/commands/fix_auth_permission.py +0 -20
- endoreg_db/management/commands/import_legacy_images.py +0 -94
- endoreg_db/management/commands/import_legacy_videos.py +0 -76
- endoreg_db/management/commands/load_active_model_data.py +0 -45
- endoreg_db/management/commands/load_endoscopy_processor_data.py +0 -45
- endoreg_db/management/commands/load_g_play_data.py +0 -113
- endoreg_db/management/commands/load_label_data.py +0 -67
- endoreg_db/management/commands/load_medication_indication_data.py +0 -63
- endoreg_db/management/commands/load_medication_indication_type_data.py +0 -41
- endoreg_db/management/commands/load_medication_schedule_data.py +0 -55
- endoreg_db/management/commands/load_network_data.py +0 -57
- endoreg_db/migrations/0002_anonymizedimagelabel_anonymousimageannotation_and_more.py +0 -55
- endoreg_db/migrations/0003_anonymousimageannotation_original_image_url_and_more.py +0 -39
- endoreg_db/migrations/0004_alter_rawpdffile_file.py +0 -20
- endoreg_db/migrations/0005_uploadedfile_alter_rawpdffile_file_anonymizedfile.py +0 -40
- endoreg_db/migrations/0006_alter_rawpdffile_file.py +0 -20
- endoreg_db/migrations/0007_networkdevicelogentry_datetime_and_more.py +0 -43
- endoreg_db/models/ai_model/__init__.py +0 -3
- endoreg_db/models/ai_model/active_model.py +0 -9
- endoreg_db/models/ai_model/model_meta.py +0 -24
- endoreg_db/models/annotation/__init__.py +0 -3
- endoreg_db/models/annotation/anonymized_image_annotation.py +0 -60
- endoreg_db/models/annotation/binary_classification_annotation_task.py +0 -80
- endoreg_db/models/annotation/image_classification.py +0 -27
- endoreg_db/models/center/center.py +0 -25
- endoreg_db/models/center/center_product.py +0 -34
- endoreg_db/models/center/center_resource.py +0 -19
- endoreg_db/models/center/center_waste.py +0 -11
- endoreg_db/models/data_file/__init__.py +0 -6
- endoreg_db/models/data_file/base_classes/__init__.py +0 -2
- endoreg_db/models/data_file/base_classes/abstract_frame.py +0 -51
- endoreg_db/models/data_file/base_classes/abstract_video.py +0 -201
- endoreg_db/models/data_file/frame.py +0 -45
- endoreg_db/models/data_file/import_classes/__init__.py +0 -32
- endoreg_db/models/data_file/import_classes/processing_functions/__init__.py +0 -35
- endoreg_db/models/data_file/import_classes/processing_functions/pdf.py +0 -28
- endoreg_db/models/data_file/import_classes/processing_functions/video.py +0 -260
- endoreg_db/models/data_file/import_classes/raw_pdf.py +0 -188
- endoreg_db/models/data_file/import_classes/raw_video.py +0 -343
- endoreg_db/models/data_file/metadata/__init__.py +0 -3
- endoreg_db/models/data_file/metadata/sensitive_meta.py +0 -31
- endoreg_db/models/data_file/metadata/video_meta.py +0 -133
- endoreg_db/models/data_file/report_file.py +0 -89
- endoreg_db/models/data_file/video/__init__.py +0 -7
- endoreg_db/models/data_file/video/import_meta.py +0 -25
- endoreg_db/models/data_file/video/video.py +0 -25
- endoreg_db/models/data_file/video_segment.py +0 -107
- endoreg_db/models/disease.py +0 -56
- endoreg_db/models/emission/__init__.py +0 -1
- endoreg_db/models/emission/emission_factor.py +0 -20
- endoreg_db/models/event.py +0 -22
- endoreg_db/models/examination/__init__.py +0 -4
- endoreg_db/models/examination/examination.py +0 -26
- endoreg_db/models/examination/examination_time.py +0 -27
- endoreg_db/models/examination/examination_time_type.py +0 -24
- endoreg_db/models/examination/examination_type.py +0 -18
- endoreg_db/models/hardware/__init__.py +0 -2
- endoreg_db/models/hardware/endoscope.py +0 -44
- endoreg_db/models/information_source.py +0 -29
- endoreg_db/models/laboratory/__init__.py +0 -1
- endoreg_db/models/laboratory/lab_value.py +0 -102
- endoreg_db/models/legacy_data/__init__.py +0 -3
- endoreg_db/models/legacy_data/image.py +0 -34
- endoreg_db/models/logging/__init__.py +0 -4
- endoreg_db/models/logging/agl_service.py +0 -19
- endoreg_db/models/logging/base.py +0 -22
- endoreg_db/models/logging/log_type.py +0 -23
- endoreg_db/models/logging/network_device.py +0 -24
- endoreg_db/models/medication/__init__.py +0 -1
- endoreg_db/models/medication/medication.py +0 -148
- endoreg_db/models/network/__init__.py +0 -3
- endoreg_db/models/network/agl_service.py +0 -38
- endoreg_db/models/network/network_device.py +0 -53
- endoreg_db/models/network/network_device_type.py +0 -23
- endoreg_db/models/other/distribution.py +0 -215
- endoreg_db/models/patient_examination/__init__.py +0 -35
- endoreg_db/models/permissions/__init__.py +0 -44
- endoreg_db/models/persons/__init__.py +0 -7
- endoreg_db/models/persons/examiner/__init__.py +0 -2
- endoreg_db/models/persons/examiner/examiner.py +0 -16
- endoreg_db/models/persons/examiner/examiner_type.py +0 -2
- endoreg_db/models/persons/patient/__init__.py +0 -8
- endoreg_db/models/persons/patient/case/case.py +0 -30
- endoreg_db/models/persons/patient/patient.py +0 -216
- endoreg_db/models/persons/patient/patient_disease.py +0 -16
- endoreg_db/models/persons/patient/patient_event.py +0 -22
- endoreg_db/models/persons/patient/patient_lab_sample.py +0 -106
- endoreg_db/models/persons/patient/patient_medication.py +0 -44
- endoreg_db/models/persons/patient/patient_medication_schedule.py +0 -28
- endoreg_db/models/persons/portal_user_information.py +0 -27
- endoreg_db/models/prediction/__init__.py +0 -2
- endoreg_db/models/prediction/image_classification.py +0 -37
- endoreg_db/models/prediction/video_prediction_meta.py +0 -244
- endoreg_db/models/product/__init__.py +0 -5
- endoreg_db/models/product/product.py +0 -97
- endoreg_db/models/product/product_group.py +0 -19
- endoreg_db/models/product/product_material.py +0 -24
- endoreg_db/models/questionnaires/__init__.py +0 -114
- endoreg_db/models/quiz/__init__.py +0 -2
- endoreg_db/models/quiz/quiz_answer.py +0 -41
- endoreg_db/models/quiz/quiz_question.py +0 -54
- endoreg_db/models/report_reader/__init__.py +0 -2
- endoreg_db/models/report_reader/report_reader_config.py +0 -53
- endoreg_db/models/rules/__init__.py +0 -5
- endoreg_db/queries/get/__init__.py +0 -6
- endoreg_db/queries/get/center.py +0 -42
- endoreg_db/queries/get/model.py +0 -13
- endoreg_db/queries/get/patient.py +0 -14
- endoreg_db/queries/get/patient_examination.py +0 -20
- endoreg_db/queries/get/report_file.py +0 -33
- endoreg_db/queries/get/video.py +0 -31
- endoreg_db/serializers/ai_model.py +0 -19
- endoreg_db/serializers/annotation.py +0 -17
- endoreg_db/serializers/center.py +0 -11
- endoreg_db/serializers/examination.py +0 -33
- endoreg_db/serializers/frame.py +0 -13
- endoreg_db/serializers/hardware.py +0 -21
- endoreg_db/serializers/label.py +0 -22
- endoreg_db/serializers/patient.py +0 -10
- endoreg_db/serializers/prediction.py +0 -15
- endoreg_db/serializers/report_file.py +0 -7
- endoreg_db/serializers/video.py +0 -27
- endoreg_db/tests.py +0 -3
- endoreg_db/utils/legacy_ocr.py +0 -201
- endoreg_db/utils/video_metadata.py +0 -87
- endoreg_db-0.4.5.dist-info/METADATA +0 -34
- endoreg_db-0.4.5.dist-info/RECORD +0 -316
- /endoreg_db/{data/distribution/numeric/.init → api/serializers/finding_descriptions.py} +0 -0
- /endoreg_db/{models/persons/patient/case/__init__.py → api/views/finding_descriptions.py} +0 -0
- /endoreg_db/{queries/get/annotation.py → config/__init__.py} +0 -0
- /endoreg_db/data/{label → ai_model_label}/label-type/data.yaml +0 -0
- /endoreg_db/data/{model_type → ai_model_type}/data.yaml +0 -0
- /endoreg_db/{queries/get/prediction.py → data/shift/m2.yaml} +0 -0
- /endoreg_db/{queries/get/video_import_meta.py → factories/__init__.py} +0 -0
- /endoreg_db/{queries/get/video_prediction_meta.py → helpers/__init__.py} +0 -0
- /endoreg_db/management/commands/{load_report_reader_flag.py → load_report_reader_flag_data.py} +0 -0
- /endoreg_db/models/{persons → administration/person}/person.py +0 -0
- /endoreg_db/models/{report_reader → media/pdf/report_reader}/report_reader_flag.py +0 -0
- /endoreg_db/models/{rules → rule}/rule_applicator.py +0 -0
- {endoreg_db-0.4.5.dist-info → endoreg_db-0.8.6.3.dist-info/licenses}/LICENSE +0 -0
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# Glucose:70–99 mg/dL
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# Ionized calcium: 1.12–1.23 mmol/L
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# Magnesium: 1.6–2.6 mg/dL
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90
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|
name_en: "Magnesium"
|
|
91
111
|
default_unit: "miligram per deciliter"
|
|
92
112
|
default_normal_range: {"min": 1.6, "max": 2.6}
|
|
113
|
+
default_numerical_value_distribution: "uniform_default"
|
|
114
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+
|
|
93
115
|
|
|
94
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|
# Phosphate: 2.5 to 4.5 mg/dL (0.81 to 1.45 mmol/L)
|
|
95
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- model: endoreg_db.lab_value
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@@ -99,6 +121,8 @@
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|
name_en: "Phosphate"
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default_unit: "miligram per deciliter"
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default_normal_range: {"min": 2.5, "max": 4.5}
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+
default_numerical_value_distribution: "uniform_default"
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+
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126
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103
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|
# Potassium: 3.5–5.0 mEq/L
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|
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- model: endoreg_db.lab_value
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@@ -108,6 +132,8 @@
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|
name_en: "Potassium"
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|
default_unit: "miliequivalent per liter"
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|
default_normal_range: {"min": 3.5, "max": 5.0}
|
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+
default_numerical_value_distribution: "uniform_default"
|
|
136
|
+
|
|
111
137
|
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112
138
|
# Pyruvate: .08-0.16 mmol/L
|
|
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- model: endoreg_db.lab_value
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@@ -117,6 +143,8 @@
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name_en: "Pyruvate"
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default_unit: "milimole per liter"
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119
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default_normal_range: {"min": 0.08, "max": 0.16}
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+
default_numerical_value_distribution: "uniform_default"
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+
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# Sodium: 136–145 mEq/L
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@@ -126,6 +154,8 @@
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name_en: "Sodium"
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default_unit: "miliequivalent per liter"
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156
|
default_normal_range: {"min": 136, "max": 145}
|
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+
default_numerical_value_distribution: "uniform_default"
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158
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+
|
|
129
159
|
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# Total calcium: 2-2.6 mmol/L (9-10.5 mg/dL)
|
|
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- model: endoreg_db.lab_value
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@@ -135,6 +165,8 @@
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name_en: "Total Calcium"
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|
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default_unit: "milimole per liter"
|
|
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|
default_normal_range: {"min": 2, "max": 2.6}
|
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+
default_numerical_value_distribution: "uniform_default"
|
|
169
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+
|
|
138
170
|
|
|
139
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|
# Total iron-binding capacity: 250–310 μg/dL
|
|
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|
- model: endoreg_db.lab_value
|
|
@@ -144,6 +176,7 @@
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|
name_en: "Total Iron-binding Capacity"
|
|
145
177
|
default_unit: "microgram per deciliter"
|
|
146
178
|
default_normal_range: {"min": 250, "max": 310}
|
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+
default_numerical_value_distribution: "uniform_default"
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|
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180
|
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|
# Total serum iron: 50–150 μg/dL
|
|
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|
- model: endoreg_db.lab_value
|
|
@@ -153,6 +186,7 @@
|
|
|
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|
name_en: "Total Serum Iron"
|
|
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|
default_unit: "microgram per deciliter"
|
|
155
188
|
default_normal_range: {"min": 50, "max": 150}
|
|
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|
+
default_numerical_value_distribution: "uniform_default"
|
|
156
190
|
|
|
157
191
|
|
|
158
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|
# Transferrin: 200–400 mg/dL
|
|
@@ -163,6 +197,7 @@
|
|
|
163
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|
name_en: "Transferrin"
|
|
164
198
|
default_unit: "miligram per deciliter"
|
|
165
199
|
default_normal_range: {"min": 200, "max": 400}
|
|
200
|
+
default_numerical_value_distribution: "uniform_default"
|
|
166
201
|
|
|
167
202
|
# Urea: 1.2-3 mmol/L
|
|
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|
- model: endoreg_db.lab_value
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|
@@ -172,6 +207,7 @@
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|
name_en: "Urea"
|
|
173
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|
default_unit: "milimole per liter"
|
|
174
209
|
default_normal_range: {"min": 1.2, "max": 3 }
|
|
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|
+
default_numerical_value_distribution: "uniform_default"
|
|
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211
|
# Uric acid: 0.18-0.48 mmol/L
|
|
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- model: endoreg_db.lab_value
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|
fields:
|
|
@@ -180,6 +216,7 @@
|
|
|
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|
name_en: "Uric Acid"
|
|
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|
default_unit: "milimole per liter"
|
|
182
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|
default_normal_range: {"min": 0.18, "max": 0.48}
|
|
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|
+
default_numerical_value_distribution: "uniform_default"
|
|
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220
|
# Zinc: 75–140 μg/dL
|
|
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|
- model: endoreg_db.lab_value
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|
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|
fields:
|
|
@@ -187,4 +224,5 @@
|
|
|
187
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|
name_de: "Zink"
|
|
188
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|
name_en: "Zinc"
|
|
189
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|
default_unit: "microgram per deciliter"
|
|
190
|
-
default_normal_range: {"min": 75, "max": 140}
|
|
227
|
+
default_normal_range: {"min": 75, "max": 140}
|
|
228
|
+
default_numerical_value_distribution: "uniform_default"
|
|
@@ -7,6 +7,7 @@
|
|
|
7
7
|
name_en: "Albumin"
|
|
8
8
|
default_unit: "gram per deciliter"
|
|
9
9
|
default_normal_range: {"min": 3.5, "max": 5.5}
|
|
10
|
+
default_numerical_value_distribution: "uniform_default"
|
|
10
11
|
|
|
11
12
|
- model: endoreg_db.lab_value
|
|
12
13
|
fields:
|
|
@@ -15,6 +16,7 @@
|
|
|
15
16
|
name_en: "Alkaline Phosphatase"
|
|
16
17
|
default_unit: "units per liter"
|
|
17
18
|
default_normal_range: {"min": 30, "max": 120}
|
|
19
|
+
default_numerical_value_distribution: "uniform_default"
|
|
18
20
|
|
|
19
21
|
# ALT and GPT are the same enzyme
|
|
20
22
|
- model: endoreg_db.lab_value
|
|
@@ -25,6 +27,7 @@
|
|
|
25
27
|
abbreviation: "ALT"
|
|
26
28
|
default_unit: "units per liter"
|
|
27
29
|
default_normal_range: {"min": 10, "max": 40}
|
|
30
|
+
default_numerical_value_distribution: "uniform_default"
|
|
28
31
|
|
|
29
32
|
- model: endoreg_db.lab_value
|
|
30
33
|
fields:
|
|
@@ -34,6 +37,7 @@
|
|
|
34
37
|
abbreviation: "GPT"
|
|
35
38
|
default_unit: "units per liter"
|
|
36
39
|
default_normal_range: {"min": 10, "max": 40}
|
|
40
|
+
default_numerical_value_distribution: "uniform_default"
|
|
37
41
|
|
|
38
42
|
- model: endoreg_db.lab_value
|
|
39
43
|
fields:
|
|
@@ -42,6 +46,7 @@
|
|
|
42
46
|
name_en: "Amylase"
|
|
43
47
|
default_unit: "units per liter"
|
|
44
48
|
default_normal_range: {"min": 25, "max": 125}
|
|
49
|
+
default_numerical_value_distribution: "uniform_default"
|
|
45
50
|
|
|
46
51
|
# Aspartate aminotransferase (AST): 10–40 U/L
|
|
47
52
|
- model: endoreg_db.lab_value
|
|
@@ -52,6 +57,7 @@
|
|
|
52
57
|
abbreviation: "AST"
|
|
53
58
|
default_unit: "units per liter"
|
|
54
59
|
default_normal_range: {"min": 10, "max": 40}
|
|
60
|
+
default_numerical_value_distribution: "uniform_default"
|
|
55
61
|
|
|
56
62
|
# AST and GOT are the same
|
|
57
63
|
- model: endoreg_db.lab_value
|
|
@@ -62,6 +68,7 @@
|
|
|
62
68
|
abbreviation: "GOT"
|
|
63
69
|
default_unit: "units per liter"
|
|
64
70
|
default_normal_range: {"min": 10, "max": 40}
|
|
71
|
+
default_numerical_value_distribution: "uniform_default"
|
|
65
72
|
|
|
66
73
|
|
|
67
74
|
# Direct bilirubin: 0.1–0.3 mg/dL
|
|
@@ -72,6 +79,7 @@
|
|
|
72
79
|
name_en: "Direct Bilirubin"
|
|
73
80
|
default_unit: "miligram per deciliter"
|
|
74
81
|
default_normal_range: {"min": 0.1, "max": 0.3}
|
|
82
|
+
default_numerical_value_distribution: "uniform_default"
|
|
75
83
|
|
|
76
84
|
# Gamma glutamyl transferase: Female: 8–40 U/L; male: 9–50 U/L
|
|
77
85
|
- model: endoreg_db.lab_value
|
|
@@ -82,6 +90,7 @@
|
|
|
82
90
|
abbreviation: "GGT"
|
|
83
91
|
default_unit: "units per liter"
|
|
84
92
|
normal_range_gender_dependent: true
|
|
93
|
+
default_numerical_value_distribution: "uniform_default"
|
|
85
94
|
default_normal_range: {
|
|
86
95
|
"female": {
|
|
87
96
|
"min": 8,
|
|
@@ -101,6 +110,7 @@
|
|
|
101
110
|
name_en: "Lipase"
|
|
102
111
|
default_unit: "units per liter"
|
|
103
112
|
default_normal_range: {"min": 10, "max": 140}
|
|
113
|
+
default_numerical_value_distribution: "uniform_default"
|
|
104
114
|
|
|
105
115
|
# Total bilirubin: 0.3–1.0 mg/dL
|
|
106
116
|
- model: endoreg_db.lab_value
|
|
@@ -110,6 +120,7 @@
|
|
|
110
120
|
name_en: "Total Bilirubin"
|
|
111
121
|
default_unit: "miligram per deciliter"
|
|
112
122
|
default_normal_range: {"min": 0.3, "max": 1.0}
|
|
123
|
+
default_numerical_value_distribution: "uniform_default"
|
|
113
124
|
|
|
114
125
|
# Total protein: 5.5–9.0 g/dL
|
|
115
126
|
- model: endoreg_db.lab_value
|
|
@@ -119,3 +130,4 @@
|
|
|
119
130
|
name_en: "Total Protein"
|
|
120
131
|
default_unit: "gram per deciliter"
|
|
121
132
|
default_normal_range: {"min": 5.5, "max": 9.0}
|
|
133
|
+
default_numerical_value_distribution: "uniform_default"
|
|
@@ -16,6 +16,7 @@
|
|
|
16
16
|
"min": 12, "max": 16
|
|
17
17
|
}
|
|
18
18
|
}
|
|
19
|
+
default_numerical_value_distribution: "uniform_default"
|
|
19
20
|
|
|
20
21
|
# Hematocrit Female: 37%–47%; male: 42%–50%
|
|
21
22
|
- model: endoreg_db.lab_value
|
|
@@ -34,6 +35,7 @@
|
|
|
34
35
|
"min": 37, "max": 47
|
|
35
36
|
}
|
|
36
37
|
}
|
|
38
|
+
default_numerical_value_distribution: "uniform_default"
|
|
37
39
|
|
|
38
40
|
# Glycosylated hemoglobin 4.0%–5.6%
|
|
39
41
|
- model:
|
|
@@ -44,6 +46,7 @@
|
|
|
44
46
|
abbreviation: "HbA1c"
|
|
45
47
|
default_unit: "percent"
|
|
46
48
|
default_normal_range: {"min": 4.0, "max": 5.6}
|
|
49
|
+
default_numerical_value_distribution: "uniform_default"
|
|
47
50
|
|
|
48
51
|
# Mean corpuscular volume (MCV): 80–98 fL
|
|
49
52
|
- model: endoreg_db.lab_value
|
|
@@ -54,6 +57,7 @@
|
|
|
54
57
|
abbreviation: "MCV"
|
|
55
58
|
default_unit: "femtoliter"
|
|
56
59
|
default_normal_range: {"min": 80, "max": 98}
|
|
60
|
+
default_numerical_value_distribution: "uniform_default"
|
|
57
61
|
|
|
58
62
|
# Red blood cell distribution width (RDW): 9.0%–14.5%
|
|
59
63
|
- model: endoreg_db.lab_value
|
|
@@ -64,6 +68,7 @@
|
|
|
64
68
|
abbreviation: "RDW"
|
|
65
69
|
default_unit: "percent"
|
|
66
70
|
default_normal_range: {"min": 9.0, "max": 14.5}
|
|
71
|
+
default_numerical_value_distribution: "uniform_default"
|
|
67
72
|
|
|
68
73
|
# Mean corpuscular hemoglobin (MCH): 28–32 pg
|
|
69
74
|
- model: endoreg_db.lab_value
|
|
@@ -74,6 +79,7 @@
|
|
|
74
79
|
abbreviation: "MCH"
|
|
75
80
|
default_unit: "picogram"
|
|
76
81
|
default_normal_range: {"min": 28, "max": 32}
|
|
82
|
+
default_numerical_value_distribution: "uniform_default"
|
|
77
83
|
|
|
78
84
|
# Mean corpuscular hemoglobin concentration (MCHC): 33–36 g/dL
|
|
79
85
|
- model: endoreg_db.lab_value
|
|
@@ -84,6 +90,7 @@
|
|
|
84
90
|
abbreviation: "MCHC"
|
|
85
91
|
default_unit: "gram per deciliter"
|
|
86
92
|
default_normal_range: {"min": 33, "max": 36}
|
|
93
|
+
default_numerical_value_distribution: "uniform_default"
|
|
87
94
|
|
|
88
95
|
|
|
89
96
|
# Reticulocytes 0.5%–1.5% of red cells
|
|
@@ -95,6 +102,7 @@
|
|
|
95
102
|
abbreviation: "Reti"
|
|
96
103
|
default_unit: "percent"
|
|
97
104
|
default_normal_range: {"min": 0.5, "max": 1.5}
|
|
105
|
+
default_numerical_value_distribution: "uniform_default"
|
|
98
106
|
|
|
99
107
|
# White blood cells (WBC) 4-10 x 10^9/L
|
|
100
108
|
- model: endoreg_db.lab_value
|
|
@@ -105,6 +113,7 @@
|
|
|
105
113
|
abbreviation: "WBC"
|
|
106
114
|
default_unit: "x 10^9 per liter"
|
|
107
115
|
default_normal_range: {"min": 4, "max": 10}
|
|
116
|
+
default_numerical_value_distribution: "uniform_default"
|
|
108
117
|
|
|
109
118
|
# Neutrophils: 2-8 x 109/L
|
|
110
119
|
- model: endoreg_db.lab_value
|
|
@@ -115,6 +124,7 @@
|
|
|
115
124
|
abbreviation: "Neu"
|
|
116
125
|
default_unit: "x 10^9 per liter"
|
|
117
126
|
default_normal_range: {"min": 2, "max": 8}
|
|
127
|
+
default_numerical_value_distribution: "uniform_default"
|
|
118
128
|
|
|
119
129
|
|
|
120
130
|
# Bands: < 1 x 109/L
|
|
@@ -125,7 +135,8 @@
|
|
|
125
135
|
name_en: "Bands"
|
|
126
136
|
abbreviation: "Bands"
|
|
127
137
|
default_unit: "x 10^9 per liter"
|
|
128
|
-
default_normal_range: {"max": 1}
|
|
138
|
+
default_normal_range: {"min": 0.0001, "max": 1}
|
|
139
|
+
default_numerical_value_distribution: "uniform_default"
|
|
129
140
|
|
|
130
141
|
# Lymphocytes: 1000 to 4800/mcL (1 to 4.8 × 109/L)
|
|
131
142
|
- model: endoreg_db.lab_value
|
|
@@ -136,6 +147,7 @@
|
|
|
136
147
|
abbreviation: "Lym"
|
|
137
148
|
default_unit: "x 10^9 per liter"
|
|
138
149
|
default_normal_range: {"min": 1, "max": 4.8}
|
|
150
|
+
default_numerical_value_distribution: "uniform_default"
|
|
139
151
|
|
|
140
152
|
|
|
141
153
|
# Monocytes: 0.2-0.8 x 109/L
|
|
@@ -147,6 +159,7 @@
|
|
|
147
159
|
abbreviation: "Mon"
|
|
148
160
|
default_unit: "x 10^9 per liter"
|
|
149
161
|
default_normal_range: {"min": 0.2, "max": 0.8}
|
|
162
|
+
default_numerical_value_distribution: "uniform_default"
|
|
150
163
|
|
|
151
164
|
# Eosinophils: .000-0.600 th/uL (0-6%)
|
|
152
165
|
- model: endoreg_db.lab_value
|
|
@@ -156,7 +169,8 @@
|
|
|
156
169
|
name_en: "Eosinophils"
|
|
157
170
|
abbreviation: "Eos"
|
|
158
171
|
default_unit: "x 10^9 per liter"
|
|
159
|
-
default_normal_range: {"max": 0.6}
|
|
172
|
+
default_normal_range: {"min": 0.01, "max": 0.6}
|
|
173
|
+
default_numerical_value_distribution: "uniform_default"
|
|
160
174
|
|
|
161
175
|
# Platelets: 150,000-350,000/µL (150-350 x 109/L)
|
|
162
176
|
- model: endoreg_db.lab_value
|
|
@@ -167,3 +181,4 @@
|
|
|
167
181
|
abbreviation: "Plt"
|
|
168
182
|
default_unit: "x 10^9 per liter"
|
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169
183
|
default_normal_range: {"min": 150, "max": 350}
|
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184
|
+
default_numerical_value_distribution: "uniform_default"
|
|
@@ -6,6 +6,7 @@
|
|
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6
6
|
abbreviation: "TBG"
|
|
7
7
|
default_unit: "microgram per mililiter"
|
|
8
8
|
default_normal_range: {"min": 12, "max": 27}
|
|
9
|
+
default_numerical_value_distribution: "uniform_default"
|
|
9
10
|
|
|
10
11
|
- model: endoreg_db.lab_value
|
|
11
12
|
fields:
|
|
@@ -15,6 +16,7 @@
|
|
|
15
16
|
abbreviation: "TSH"
|
|
16
17
|
default_unit: "microinternational units per mililiter"
|
|
17
18
|
default_normal_range: {"min": 0.5, "max": 4.0}
|
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19
|
+
default_numerical_value_distribution: "uniform_default"
|
|
18
20
|
|
|
19
21
|
- model: endoreg_db.lab_value
|
|
20
22
|
fields:
|
|
@@ -24,6 +26,7 @@
|
|
|
24
26
|
abbreviation: "T4"
|
|
25
27
|
default_unit: "microgram per deciliter"
|
|
26
28
|
default_normal_range: {"min": 5, "max": 12}
|
|
29
|
+
default_numerical_value_distribution: "uniform_default"
|
|
27
30
|
|
|
28
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|
- model: endoreg_db.lab_value
|
|
29
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|
fields:
|
|
@@ -33,6 +36,7 @@
|
|
|
33
36
|
abbreviation: "T3"
|
|
34
37
|
default_unit: "nanogram per deciliter"
|
|
35
38
|
default_normal_range: {"min": 80, "max": 180}
|
|
39
|
+
default_numerical_value_distribution: "uniform_default"
|
|
36
40
|
|
|
37
41
|
- model: endoreg_db.lab_value
|
|
38
42
|
fields:
|
|
@@ -42,6 +46,7 @@
|
|
|
42
46
|
abbreviation: "fT3"
|
|
43
47
|
default_unit: "picogram per mililiter"
|
|
44
48
|
default_normal_range: {"min": 2.3, "max": 4.2}
|
|
49
|
+
default_numerical_value_distribution: "uniform_default"
|
|
45
50
|
|
|
46
51
|
- model: endoreg_db.lab_value
|
|
47
52
|
fields:
|
|
@@ -51,3 +56,4 @@
|
|
|
51
56
|
abbreviation: "fT4"
|
|
52
57
|
default_unit: "nanogram per deciliter"
|
|
53
58
|
default_normal_range: {"min": 0.8, "max": 2.8}
|
|
59
|
+
default_numerical_value_distribution: "uniform_default"
|
|
@@ -9,7 +9,11 @@
|
|
|
9
9
|
name_de: "Triglyceride"
|
|
10
10
|
name_en: "Triglycerides"
|
|
11
11
|
default_unit: "miligram per deciliter"
|
|
12
|
-
default_normal_range: {
|
|
12
|
+
default_normal_range: {
|
|
13
|
+
"min": 0,
|
|
14
|
+
"max": 150
|
|
15
|
+
}
|
|
16
|
+
default_numerical_value_distribution: "uniform_default"
|
|
13
17
|
|
|
14
18
|
- model: endoreg_db.lab_value
|
|
15
19
|
fields:
|
|
@@ -17,7 +21,8 @@
|
|
|
17
21
|
name_de: "Gesamtcholesterin"
|
|
18
22
|
name_en: "Total Cholesterol"
|
|
19
23
|
default_unit: "miligram per deciliter"
|
|
20
|
-
default_normal_range: {"max": 200}
|
|
24
|
+
default_normal_range: {"min": 0,"max": 200}
|
|
25
|
+
default_numerical_value_distribution: "uniform_default"
|
|
21
26
|
|
|
22
27
|
- model: endoreg_db.lab_value
|
|
23
28
|
fields:
|
|
@@ -28,12 +33,15 @@
|
|
|
28
33
|
normal_range_gender_dependent: true
|
|
29
34
|
default_normal_range: {
|
|
30
35
|
"female": {
|
|
36
|
+
"min": 10,
|
|
31
37
|
"max": 50
|
|
32
38
|
},
|
|
33
39
|
"male": {
|
|
40
|
+
"min": 10,
|
|
34
41
|
"max": 40
|
|
35
42
|
}
|
|
36
43
|
}
|
|
44
|
+
default_numerical_value_distribution: "uniform_default"
|
|
37
45
|
|
|
38
46
|
- model: endoreg_db.lab_value
|
|
39
47
|
fields:
|
|
@@ -41,4 +49,5 @@
|
|
|
41
49
|
name_de: "Low-Density-Lipoprotein"
|
|
42
50
|
name_en: "Low-Density Lipoprotein"
|
|
43
51
|
default_unit: "miligram per deciliter"
|
|
44
|
-
default_normal_range: {"max": 100}
|
|
52
|
+
default_normal_range: {"min": 20, "max": 100}
|
|
53
|
+
default_numerical_value_distribution: "uniform_default"
|
|
@@ -9,7 +9,8 @@
|
|
|
9
9
|
name_en: "C-reactive protein"
|
|
10
10
|
abbreviation: "CRP"
|
|
11
11
|
default_unit: "miligram per deciliter"
|
|
12
|
-
default_normal_range: {"max": 0.5}
|
|
12
|
+
default_normal_range: {"min": 0, "max": 0.5}
|
|
13
|
+
default_numerical_value_distribution: "uniform_default"
|
|
13
14
|
|
|
14
15
|
- model: endoreg_db.lab_value
|
|
15
16
|
fields:
|
|
@@ -18,7 +19,8 @@
|
|
|
18
19
|
name_en: "D-dimer"
|
|
19
20
|
abbreviation: "D-Dimer"
|
|
20
21
|
default_unit: "nanogram per mililiter"
|
|
21
|
-
default_normal_range: {"max": 300}
|
|
22
|
+
default_normal_range: {"min": 50, "max": 300}
|
|
23
|
+
default_numerical_value_distribution: "uniform_default"
|
|
22
24
|
|
|
23
25
|
- model: endoreg_db.lab_value
|
|
24
26
|
fields:
|
|
@@ -28,3 +30,47 @@
|
|
|
28
30
|
abbreviation: "LDH"
|
|
29
31
|
default_unit: "units per liter"
|
|
30
32
|
default_normal_range: {"min": 60, "max": 160}
|
|
33
|
+
default_numerical_value_distribution: "uniform_default"
|
|
34
|
+
|
|
35
|
+
# Categorical Lab Values
|
|
36
|
+
- model: endoreg_db.lab_value
|
|
37
|
+
fields:
|
|
38
|
+
name: "blood_group"
|
|
39
|
+
name_de: "Blutgruppe"
|
|
40
|
+
name_en: "Blood Group"
|
|
41
|
+
abbreviation: "BG"
|
|
42
|
+
|
|
43
|
+
- model: endoreg_db.lab_value
|
|
44
|
+
fields:
|
|
45
|
+
name: "urine_bacteria_culture"
|
|
46
|
+
name_de: "Urinbakterienkultur"
|
|
47
|
+
name_en: "Urine Bacteria Culture"
|
|
48
|
+
abbreviation: "UBC"
|
|
49
|
+
|
|
50
|
+
- model: endoreg_db.lab_value
|
|
51
|
+
fields:
|
|
52
|
+
name: "microbiology_pathogen_report"
|
|
53
|
+
name_de: "Mikrobiologie Erregerbericht"
|
|
54
|
+
name_en: "Microbiology Pathogen Report"
|
|
55
|
+
abbreviation: "MPR"
|
|
56
|
+
|
|
57
|
+
- model: endoreg_db.lab_value
|
|
58
|
+
fields:
|
|
59
|
+
name: "drug_screening_urine"
|
|
60
|
+
name_de: "Drogenscreening Urin"
|
|
61
|
+
name_en: "Drug Screening Urine"
|
|
62
|
+
abbreviation: "DSU"
|
|
63
|
+
|
|
64
|
+
- model: endoreg_db.lab_value
|
|
65
|
+
fields:
|
|
66
|
+
name: "antibiotic_resistance_report"
|
|
67
|
+
name_de: "Antibiotikaresistenzbericht"
|
|
68
|
+
name_en: "Antibiotic Resistance Report"
|
|
69
|
+
abbreviation: "ARR"
|
|
70
|
+
|
|
71
|
+
- model: endoreg_db.lab_value
|
|
72
|
+
fields:
|
|
73
|
+
name: "cytology_report"
|
|
74
|
+
name_de: "Zytologiebericht"
|
|
75
|
+
name_en: "Cytology Report"
|
|
76
|
+
abbreviation: "CR"
|
|
@@ -0,0 +1,54 @@
|
|
|
1
|
+
# Client Tags
|
|
2
|
+
- model: endoreg_db.lx_client_tag
|
|
3
|
+
fields:
|
|
4
|
+
name: "coloreg"
|
|
5
|
+
description: "Coloreg related clients"
|
|
6
|
+
permissions: [
|
|
7
|
+
"local_base_db_read",
|
|
8
|
+
"local_base_db_write",
|
|
9
|
+
]
|
|
10
|
+
|
|
11
|
+
- model: endoreg_db.lx_client_tag
|
|
12
|
+
fields:
|
|
13
|
+
name: "client"
|
|
14
|
+
description: "General client"
|
|
15
|
+
permissions: [
|
|
16
|
+
"local_base_db_read",
|
|
17
|
+
"local_base_db_write",
|
|
18
|
+
]
|
|
19
|
+
|
|
20
|
+
- model: endoreg_db.lx_client_tag
|
|
21
|
+
fields:
|
|
22
|
+
name: "server"
|
|
23
|
+
description: "General server"
|
|
24
|
+
permissions: [
|
|
25
|
+
"local_base_db_read",
|
|
26
|
+
"local_base_db_write",
|
|
27
|
+
]
|
|
28
|
+
|
|
29
|
+
- model: endoreg_db.lx_client_tag
|
|
30
|
+
fields:
|
|
31
|
+
name: "production"
|
|
32
|
+
description: "Production environment"
|
|
33
|
+
permissions: [
|
|
34
|
+
"local_base_db_read",
|
|
35
|
+
"local_base_db_write",
|
|
36
|
+
]
|
|
37
|
+
|
|
38
|
+
- model: endoreg_db.lx_client_tag
|
|
39
|
+
fields:
|
|
40
|
+
name: "development"
|
|
41
|
+
description: "Development environment"
|
|
42
|
+
permissions: [
|
|
43
|
+
"local_base_db_read",
|
|
44
|
+
"local_base_db_write",
|
|
45
|
+
]
|
|
46
|
+
|
|
47
|
+
- model: endoreg_db.lx_client_tag
|
|
48
|
+
fields:
|
|
49
|
+
name: "test"
|
|
50
|
+
description: "Test environment"
|
|
51
|
+
permissions: [
|
|
52
|
+
"local_base_db_read",
|
|
53
|
+
"local_base_db_write",
|
|
54
|
+
]
|
|
@@ -0,0 +1,30 @@
|
|
|
1
|
+
# Client Types
|
|
2
|
+
- model: endoreg_db.lx_clienttype
|
|
3
|
+
fields:
|
|
4
|
+
name: "base-client"
|
|
5
|
+
abbreviation: "c"
|
|
6
|
+
|
|
7
|
+
- model: endoreg_db.lx_clienttype
|
|
8
|
+
fields:
|
|
9
|
+
name: "gpu-client"
|
|
10
|
+
abbreviation: "gc"
|
|
11
|
+
|
|
12
|
+
- model: endoreg_db.lx_clienttype
|
|
13
|
+
fields:
|
|
14
|
+
name: "coloreg-client"
|
|
15
|
+
abbreviation: "cc"
|
|
16
|
+
|
|
17
|
+
- model: endoreg_db.lx_clienttype
|
|
18
|
+
fields:
|
|
19
|
+
name: "base-server"
|
|
20
|
+
abbreviation: "s"
|
|
21
|
+
|
|
22
|
+
- model: endoreg_db.lx_clienttype
|
|
23
|
+
fields:
|
|
24
|
+
name: "gpu-server"
|
|
25
|
+
abbreviation: "gs"
|
|
26
|
+
|
|
27
|
+
- model: endoreg_db.lx_clienttype
|
|
28
|
+
fields:
|
|
29
|
+
name: "storage-server"
|
|
30
|
+
abbreviation: "ss"
|