endoreg-db 0.4.5__py3-none-any.whl → 0.8.6.3__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- endoreg_db/admin.py +90 -1
- endoreg_db/api_urls.py +4 -0
- endoreg_db/apps.py +12 -0
- endoreg_db/assets/dummy_model.ckpt +1 -0
- endoreg_db/codemods/readme.md +88 -0
- endoreg_db/codemods/rename_datetime_fields.py +92 -0
- endoreg_db/config/env.py +101 -0
- endoreg_db/data/__init__.py +76 -4
- endoreg_db/data/ai_model/data.yaml +7 -0
- endoreg_db/data/{label → ai_model_label}/label/data.yaml +27 -1
- endoreg_db/data/ai_model_label/label/polyp_classification.yaml +52 -0
- endoreg_db/data/ai_model_label/label-set/data.yaml +40 -0
- endoreg_db/data/ai_model_label/label-set/polyp_classifications.yaml +25 -0
- endoreg_db/data/ai_model_meta/default_multilabel_classification.yaml +27 -0
- endoreg_db/data/ai_model_video_segmentation_label/base_segmentation.yaml +176 -0
- endoreg_db/data/ai_model_video_segmentation_labelset/data.yaml +20 -0
- endoreg_db/data/center/data.yaml +40 -9
- endoreg_db/data/center_shift/ukw.yaml +9 -0
- endoreg_db/data/contraindication/bleeding.yaml +11 -0
- endoreg_db/data/db_summary.csv +58 -0
- endoreg_db/data/db_summary.xlsx +0 -0
- endoreg_db/data/disease/misc.yaml +1 -2
- endoreg_db/data/disease_classification/chronic_kidney_disease.yaml +2 -2
- endoreg_db/data/disease_classification_choice/chronic_kidney_disease.yaml +6 -6
- endoreg_db/data/distribution/numeric/data.yaml +14 -0
- endoreg_db/data/endoscope/data.yaml +93 -0
- endoreg_db/data/endoscopy_processor/data.yaml +3 -0
- endoreg_db/data/event/cardiology.yaml +0 -13
- endoreg_db/data/examination/examinations/data.yaml +34 -28
- endoreg_db/data/examination/type/data.yaml +12 -0
- endoreg_db/data/examination_indication/endoscopy.yaml +424 -0
- endoreg_db/data/examination_indication_classification/endoscopy.yaml +160 -0
- endoreg_db/data/examination_indication_classification_choice/endoscopy.yaml +101 -0
- endoreg_db/data/examination_requirement_set/colonoscopy.yaml +15 -0
- endoreg_db/data/finding/anatomy_colon.yaml +128 -0
- endoreg_db/data/finding/colonoscopy.yaml +40 -0
- endoreg_db/data/finding/colonoscopy_bowel_prep.yaml +56 -0
- endoreg_db/data/finding/complication.yaml +16 -0
- endoreg_db/data/finding/data.yaml +105 -0
- endoreg_db/data/finding/examination_setting.yaml +16 -0
- endoreg_db/data/finding/medication_related.yaml +18 -0
- endoreg_db/data/finding/outcome.yaml +12 -0
- endoreg_db/data/finding_classification/colonoscopy_bowel_preparation.yaml +95 -0
- endoreg_db/data/finding_classification/colonoscopy_jnet.yaml +22 -0
- endoreg_db/data/finding_classification/colonoscopy_kudo.yaml +25 -0
- endoreg_db/data/finding_classification/colonoscopy_lesion_circularity.yaml +20 -0
- endoreg_db/data/finding_classification/colonoscopy_lesion_planarity.yaml +24 -0
- endoreg_db/data/finding_classification/colonoscopy_lesion_size.yaml +68 -0
- endoreg_db/data/finding_classification/colonoscopy_lesion_surface.yaml +20 -0
- endoreg_db/data/finding_classification/colonoscopy_location.yaml +80 -0
- endoreg_db/data/finding_classification/colonoscopy_lst.yaml +21 -0
- endoreg_db/data/finding_classification/colonoscopy_nice.yaml +20 -0
- endoreg_db/data/finding_classification/colonoscopy_paris.yaml +26 -0
- endoreg_db/data/finding_classification/colonoscopy_sano.yaml +22 -0
- endoreg_db/data/finding_classification/colonoscopy_summary.yaml +53 -0
- endoreg_db/data/finding_classification/complication_generic.yaml +25 -0
- endoreg_db/data/finding_classification/examination_setting_generic.yaml +40 -0
- endoreg_db/data/finding_classification/histology_colo.yaml +51 -0
- endoreg_db/data/finding_classification/intervention_required.yaml +26 -0
- endoreg_db/data/finding_classification/medication_related.yaml +23 -0
- endoreg_db/data/finding_classification/visualized.yaml +33 -0
- endoreg_db/data/finding_classification_choice/bowel_preparation.yaml +78 -0
- endoreg_db/data/finding_classification_choice/colon_lesion_circularity_default.yaml +32 -0
- endoreg_db/data/finding_classification_choice/colon_lesion_jnet.yaml +15 -0
- endoreg_db/data/finding_classification_choice/colon_lesion_kudo.yaml +23 -0
- endoreg_db/data/finding_classification_choice/colon_lesion_lst.yaml +15 -0
- endoreg_db/data/finding_classification_choice/colon_lesion_nice.yaml +17 -0
- endoreg_db/data/finding_classification_choice/colon_lesion_paris.yaml +57 -0
- endoreg_db/data/finding_classification_choice/colon_lesion_planarity_default.yaml +49 -0
- endoreg_db/data/finding_classification_choice/colon_lesion_sano.yaml +14 -0
- endoreg_db/data/finding_classification_choice/colon_lesion_surface_intact_default.yaml +36 -0
- endoreg_db/data/finding_classification_choice/colonoscopy_location.yaml +229 -0
- endoreg_db/data/finding_classification_choice/colonoscopy_not_complete_reason.yaml +19 -0
- endoreg_db/data/finding_classification_choice/colonoscopy_size.yaml +82 -0
- endoreg_db/data/finding_classification_choice/colonoscopy_summary_worst_finding.yaml +15 -0
- endoreg_db/data/finding_classification_choice/complication_generic_types.yaml +15 -0
- endoreg_db/data/finding_classification_choice/examination_setting_generic_types.yaml +15 -0
- endoreg_db/data/finding_classification_choice/histology.yaml +24 -0
- endoreg_db/data/finding_classification_choice/histology_polyp.yaml +20 -0
- endoreg_db/data/finding_classification_choice/outcome.yaml +19 -0
- endoreg_db/data/finding_classification_choice/yes_no_na.yaml +11 -0
- endoreg_db/data/finding_classification_type/colonoscopy_basic.yaml +48 -0
- endoreg_db/data/finding_intervention/endoscopy.yaml +43 -0
- endoreg_db/data/finding_intervention/endoscopy_colonoscopy.yaml +168 -0
- endoreg_db/data/finding_intervention/endoscopy_egd.yaml +128 -0
- endoreg_db/data/finding_intervention/endoscopy_ercp.yaml +32 -0
- endoreg_db/data/finding_intervention/endoscopy_eus_lower.yaml +9 -0
- endoreg_db/data/finding_intervention/endoscopy_eus_upper.yaml +36 -0
- endoreg_db/data/finding_intervention_type/endoscopy.yaml +15 -0
- endoreg_db/data/finding_morphology_classification_type/colonoscopy.yaml +79 -0
- endoreg_db/data/finding_type/data.yaml +43 -0
- endoreg_db/data/gender/data.yaml +24 -0
- endoreg_db/data/information_source/annotation.yaml +6 -0
- endoreg_db/data/information_source/endoscopy_guidelines.yaml +7 -0
- endoreg_db/data/information_source/prediction.yaml +7 -0
- endoreg_db/data/information_source_type/data.yaml +8 -0
- endoreg_db/data/lab_value/cardiac_enzymes.yaml +7 -1
- endoreg_db/data/lab_value/coagulation.yaml +6 -1
- endoreg_db/data/lab_value/electrolytes.yaml +39 -1
- endoreg_db/data/lab_value/gastrointestinal_function.yaml +12 -0
- endoreg_db/data/lab_value/hematology.yaml +17 -2
- endoreg_db/data/lab_value/hormones.yaml +6 -0
- endoreg_db/data/lab_value/lipids.yaml +12 -3
- endoreg_db/data/lab_value/misc.yaml +48 -2
- endoreg_db/data/lab_value/renal_function.yaml +2 -1
- endoreg_db/data/lx_client_tag/base.yaml +54 -0
- endoreg_db/data/lx_client_type/base.yaml +30 -0
- endoreg_db/data/lx_permission/base.yaml +24 -0
- endoreg_db/data/lx_permission/endoreg.yaml +52 -0
- endoreg_db/data/medication/anticoagulation.yaml +5 -5
- endoreg_db/data/medication/tah.yaml +5 -5
- endoreg_db/data/medication_indication/anticoagulation.yaml +48 -53
- endoreg_db/data/medication_intake_time/base.yaml +4 -4
- endoreg_db/data/names_first/first_names.yaml +54 -0
- endoreg_db/data/names_last/last_names.yaml +51 -0
- endoreg_db/data/network_device/data.yaml +30 -0
- endoreg_db/data/organ/data.yaml +29 -0
- endoreg_db/data/pdf_type/data.yaml +27 -9
- endoreg_db/data/qualification/endoscopy.yaml +36 -0
- endoreg_db/data/qualification/m2.yaml +39 -0
- endoreg_db/data/qualification/outpatient_clinic.yaml +35 -0
- endoreg_db/data/qualification/sonography.yaml +36 -0
- endoreg_db/data/qualification_type/base.yaml +29 -0
- endoreg_db/data/report_reader_flag/rkh-histology-generic.yaml +10 -0
- endoreg_db/data/report_reader_flag/ukw-examination-generic.yaml +4 -0
- endoreg_db/data/report_reader_flag/ukw-histology-generic.yaml +5 -0
- endoreg_db/data/requirement/age.yaml +26 -0
- endoreg_db/data/requirement/colonoscopy_baseline_austria.yaml +45 -0
- endoreg_db/data/requirement/disease_cardiovascular.yaml +79 -0
- endoreg_db/data/requirement/disease_classification_choice_cardiovascular.yaml +41 -0
- endoreg_db/data/requirement/disease_hepatology.yaml +12 -0
- endoreg_db/data/requirement/disease_misc.yaml +12 -0
- endoreg_db/data/requirement/disease_renal.yaml +96 -0
- endoreg_db/data/requirement/endoscopy_bleeding_risk.yaml +59 -0
- endoreg_db/data/requirement/event_cardiology.yaml +251 -0
- endoreg_db/data/requirement/event_requirements.yaml +145 -0
- endoreg_db/data/requirement/finding_colon_polyp.yaml +50 -0
- endoreg_db/data/requirement/gender.yaml +25 -0
- endoreg_db/data/requirement/lab_value.yaml +441 -0
- endoreg_db/data/requirement/medication.yaml +93 -0
- endoreg_db/data/requirement_operator/age.yaml +13 -0
- endoreg_db/data/requirement_operator/lab_operators.yaml +129 -0
- endoreg_db/data/requirement_operator/model_operators.yaml +96 -0
- endoreg_db/data/requirement_set/01_endoscopy_generic.yaml +48 -0
- endoreg_db/data/requirement_set/colonoscopy_austria_screening.yaml +57 -0
- endoreg_db/data/requirement_set/endoscopy_bleeding_risk.yaml +52 -0
- endoreg_db/data/requirement_set_type/data.yaml +20 -0
- endoreg_db/data/requirement_type/requirement_types.yaml +165 -0
- endoreg_db/data/risk/bleeding.yaml +26 -0
- endoreg_db/data/risk/thrombosis.yaml +37 -0
- endoreg_db/data/risk_type/data.yaml +27 -0
- endoreg_db/data/setup_config.yaml +38 -0
- endoreg_db/data/shift/endoscopy.yaml +21 -0
- endoreg_db/data/shift_type/base.yaml +35 -0
- endoreg_db/data/tag/requirement_set_tags.yaml +11 -0
- endoreg_db/data/unit/concentration.yaml +23 -0
- endoreg_db/data/unit/time.yaml +36 -1
- endoreg_db/exceptions.py +19 -0
- endoreg_db/forms/__init__.py +3 -1
- endoreg_db/forms/examination_form.py +11 -0
- endoreg_db/forms/patient_finding_intervention_form.py +18 -0
- endoreg_db/forms/patient_form.py +27 -0
- endoreg_db/forms/questionnaires/__init__.py +1 -1
- endoreg_db/forms/questionnaires/tto_questionnaire.py +19 -19
- endoreg_db/helpers/count_db.py +45 -0
- endoreg_db/helpers/data_loader.py +208 -0
- endoreg_db/helpers/default_objects.py +378 -0
- endoreg_db/helpers/download_segmentation_model.py +31 -0
- endoreg_db/helpers/interact.py +6 -0
- endoreg_db/helpers/test_video_helper.py +119 -0
- endoreg_db/logger_conf.py +140 -0
- endoreg_db/management/__init__.py +1 -0
- endoreg_db/management/commands/__init__.py +1 -0
- endoreg_db/management/commands/anonymize_video.py +0 -0
- endoreg_db/management/commands/check_auth.py +125 -0
- endoreg_db/management/commands/create_model_meta_from_huggingface.py +115 -0
- endoreg_db/management/commands/create_multilabel_model_meta.py +214 -0
- endoreg_db/management/commands/fix_missing_patient_data.py +172 -0
- endoreg_db/management/commands/fix_video_paths.py +165 -0
- endoreg_db/management/commands/import_fallback_video.py +203 -0
- endoreg_db/management/commands/import_report.py +298 -0
- endoreg_db/management/commands/import_video.py +423 -0
- endoreg_db/management/commands/import_video_with_classification.py +367 -0
- endoreg_db/management/commands/init_default_ai_model.py +112 -0
- endoreg_db/management/commands/load_ai_model_data.py +58 -26
- endoreg_db/management/commands/load_ai_model_label_data.py +59 -0
- endoreg_db/management/commands/load_base_db_data.py +174 -118
- endoreg_db/management/commands/load_center_data.py +46 -21
- endoreg_db/management/commands/{load_logging_data.py → load_contraindication_data.py} +4 -2
- endoreg_db/management/commands/load_disease_data.py +29 -7
- endoreg_db/management/commands/{load_endoscope_type_data.py → load_endoscope_data.py} +30 -7
- endoreg_db/management/commands/load_examination_indication_data.py +86 -0
- endoreg_db/management/commands/load_finding_data.py +128 -0
- endoreg_db/management/commands/load_green_endoscopy_wuerzburg_data.py +0 -1
- endoreg_db/management/commands/load_information_source.py +13 -7
- endoreg_db/management/commands/load_lab_value_data.py +3 -3
- endoreg_db/management/commands/load_medication_data.py +83 -21
- endoreg_db/management/commands/load_name_data.py +37 -0
- endoreg_db/management/commands/{load_medication_intake_time_data.py → load_organ_data.py} +7 -5
- endoreg_db/management/commands/load_qualification_data.py +59 -0
- endoreg_db/management/commands/load_requirement_data.py +180 -0
- endoreg_db/management/commands/load_risk_data.py +56 -0
- endoreg_db/management/commands/load_shift_data.py +60 -0
- endoreg_db/management/commands/load_tag_data.py +57 -0
- endoreg_db/management/commands/register_ai_model.py +1 -1
- endoreg_db/management/commands/setup_endoreg_db.py +381 -0
- endoreg_db/management/commands/start_filewatcher.py +106 -0
- endoreg_db/management/commands/storage_management.py +548 -0
- endoreg_db/management/commands/summarize_db_content.py +189 -0
- endoreg_db/management/commands/validate_video.py +204 -0
- endoreg_db/management/commands/validate_video_files.py +161 -0
- endoreg_db/management/commands/video_validation.py +22 -0
- endoreg_db/mermaid/Overall_flow_patient_finding_intervention.md +10 -0
- endoreg_db/mermaid/anonymized_image_annotation.md +20 -0
- endoreg_db/mermaid/binary_classification_annotation.md +50 -0
- endoreg_db/mermaid/classification.md +8 -0
- endoreg_db/mermaid/examination.md +8 -0
- endoreg_db/mermaid/findings.md +7 -0
- endoreg_db/mermaid/image_classification.md +28 -0
- endoreg_db/mermaid/interventions.md +8 -0
- endoreg_db/mermaid/morphology.md +8 -0
- endoreg_db/mermaid/patient_creation.md +14 -0
- endoreg_db/mermaid/video_segmentation_annotation.md +17 -0
- endoreg_db/migrations/0001_initial.py +1234 -944
- endoreg_db/migrations/0002_add_video_correction_models.py +52 -0
- endoreg_db/migrations/0003_add_center_display_name.py +30 -0
- endoreg_db/models/__init__.py +339 -53
- endoreg_db/models/administration/__init__.py +116 -0
- endoreg_db/models/administration/ai/__init__.py +9 -0
- endoreg_db/models/administration/ai/active_model.py +35 -0
- endoreg_db/models/administration/ai/ai_model.py +156 -0
- endoreg_db/models/{ai_model → administration/ai}/model_type.py +19 -4
- endoreg_db/models/administration/case/__init__.py +19 -0
- endoreg_db/models/administration/case/case.py +114 -0
- endoreg_db/models/{case_template → administration/case/case_template}/__init__.py +10 -1
- endoreg_db/models/{case_template → administration/case/case_template}/case_template.py +60 -16
- endoreg_db/models/{case_template → administration/case/case_template}/case_template_rule.py +6 -13
- endoreg_db/models/{case_template → administration/case/case_template}/case_template_rule_value.py +21 -8
- endoreg_db/models/{case_template → administration/case/case_template}/case_template_type.py +1 -3
- endoreg_db/models/{center → administration/center}/__init__.py +9 -0
- endoreg_db/models/administration/center/center.py +67 -0
- endoreg_db/models/administration/center/center_product.py +64 -0
- endoreg_db/models/administration/center/center_resource.py +49 -0
- endoreg_db/models/administration/center/center_shift.py +88 -0
- endoreg_db/models/administration/center/center_waste.py +30 -0
- endoreg_db/models/administration/permissions/__init__.py +44 -0
- endoreg_db/models/administration/person/__init__.py +24 -0
- endoreg_db/models/administration/person/employee/__init__.py +3 -0
- endoreg_db/models/administration/person/employee/employee.py +35 -0
- endoreg_db/models/administration/person/employee/employee_qualification.py +39 -0
- endoreg_db/models/administration/person/employee/employee_type.py +42 -0
- endoreg_db/models/administration/person/examiner/__init__.py +4 -0
- endoreg_db/models/administration/person/examiner/examiner.py +54 -0
- endoreg_db/models/administration/person/names/__init__.py +0 -0
- endoreg_db/models/{persons → administration/person/names}/first_name.py +1 -1
- endoreg_db/models/{persons → administration/person/names}/last_name.py +2 -3
- endoreg_db/models/administration/person/patient/__init__.py +5 -0
- endoreg_db/models/administration/person/patient/patient.py +460 -0
- endoreg_db/models/administration/person/profession/__init__.py +24 -0
- endoreg_db/models/administration/person/user/__init__.py +5 -0
- endoreg_db/models/administration/person/user/portal_user_information.py +37 -0
- endoreg_db/models/administration/product/__init__.py +14 -0
- endoreg_db/models/administration/product/product.py +97 -0
- endoreg_db/models/administration/product/product_group.py +39 -0
- endoreg_db/models/administration/product/product_material.py +54 -0
- endoreg_db/models/{product → administration/product}/product_weight.py +21 -0
- endoreg_db/models/{product → administration/product}/reference_product.py +44 -13
- endoreg_db/models/administration/qualification/__init__.py +7 -0
- endoreg_db/models/administration/qualification/qualification.py +37 -0
- endoreg_db/models/administration/qualification/qualification_type.py +35 -0
- endoreg_db/models/administration/shift/__init__.py +9 -0
- endoreg_db/models/administration/shift/scheduled_days.py +69 -0
- endoreg_db/models/administration/shift/shift.py +51 -0
- endoreg_db/models/administration/shift/shift_type.py +108 -0
- endoreg_db/models/label/__init__.py +24 -1
- endoreg_db/models/label/annotation/__init__.py +12 -0
- endoreg_db/models/label/annotation/image_classification.py +84 -0
- endoreg_db/models/label/annotation/video_segmentation_annotation.py +66 -0
- endoreg_db/models/label/label.py +53 -54
- endoreg_db/models/label/label_set.py +53 -0
- endoreg_db/models/label/label_type.py +29 -0
- endoreg_db/models/label/label_video_segment/__init__.py +3 -0
- endoreg_db/models/label/label_video_segment/_create_from_video.py +41 -0
- endoreg_db/models/label/label_video_segment/label_video_segment.py +511 -0
- endoreg_db/models/label/video_segmentation_label.py +31 -0
- endoreg_db/models/label/video_segmentation_labelset.py +27 -0
- endoreg_db/models/media/__init__.py +16 -0
- endoreg_db/models/media/frame/__init__.py +3 -0
- endoreg_db/models/media/frame/frame.py +111 -0
- endoreg_db/models/media/pdf/__init__.py +11 -0
- endoreg_db/models/media/pdf/raw_pdf.py +757 -0
- endoreg_db/models/media/pdf/report_file.py +162 -0
- endoreg_db/models/media/pdf/report_reader/__init__.py +7 -0
- endoreg_db/models/media/pdf/report_reader/report_reader_config.py +77 -0
- endoreg_db/models/media/video/__init__.py +8 -0
- endoreg_db/models/media/video/create_from_file.py +358 -0
- endoreg_db/models/media/video/pipe_1.py +213 -0
- endoreg_db/models/media/video/pipe_2.py +105 -0
- endoreg_db/models/media/video/refactor_plan.md +0 -0
- endoreg_db/models/media/video/video_file.py +825 -0
- endoreg_db/models/media/video/video_file_ai.py +443 -0
- endoreg_db/models/media/video/video_file_anonymize.py +349 -0
- endoreg_db/models/media/video/video_file_frames/__init__.py +47 -0
- endoreg_db/models/media/video/video_file_frames/_bulk_create_frames.py +22 -0
- endoreg_db/models/media/video/video_file_frames/_create_frame_object.py +23 -0
- endoreg_db/models/media/video/video_file_frames/_delete_frames.py +104 -0
- endoreg_db/models/media/video/video_file_frames/_extract_frames.py +174 -0
- endoreg_db/models/media/video/video_file_frames/_get_frame.py +28 -0
- endoreg_db/models/media/video/video_file_frames/_get_frame_number.py +27 -0
- endoreg_db/models/media/video/video_file_frames/_get_frame_path.py +20 -0
- endoreg_db/models/media/video/video_file_frames/_get_frame_paths.py +27 -0
- endoreg_db/models/media/video/video_file_frames/_get_frame_range.py +34 -0
- endoreg_db/models/media/video/video_file_frames/_get_frames.py +27 -0
- endoreg_db/models/media/video/video_file_frames/_initialize_frames.py +129 -0
- endoreg_db/models/media/video/video_file_frames/_manage_frame_range.py +141 -0
- endoreg_db/models/media/video/video_file_frames/_mark_frames_extracted_status.py +65 -0
- endoreg_db/models/media/video/video_file_frames.py +0 -0
- endoreg_db/models/media/video/video_file_io.py +168 -0
- endoreg_db/models/media/video/video_file_meta/__init__.py +22 -0
- endoreg_db/models/media/video/video_file_meta/get_crop_template.py +45 -0
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- endoreg_db/models/medical/hardware/endoscope.py +65 -0
- endoreg_db/models/{hardware → medical/hardware}/endoscopy_processor.py +68 -29
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- endoreg_db/models/{rules → rule}/rule_type.py +0 -2
- endoreg_db/models/{rules → rule}/ruleset.py +0 -2
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- endoreg_db/views/pdf/pdf_stream.py +187 -0
- endoreg_db/views/pdf/reimport.py +177 -0
- endoreg_db/views/report/__init__.py +9 -0
- endoreg_db/views/report/report_list.py +112 -0
- endoreg_db/views/report/report_with_secure_url.py +28 -0
- endoreg_db/views/report/start_examination.py +7 -0
- endoreg_db/views/requirement/__init__.py +10 -0
- endoreg_db/views/requirement/evaluate.py +279 -0
- endoreg_db/views/requirement/lookup.py +367 -0
- endoreg_db/views/requirement/lookup_store.py +252 -0
- endoreg_db/views/requirement_lookup/lookup.py +0 -0
- endoreg_db/views/requirement_lookup/lookup_store.py +0 -0
- endoreg_db/views/stats/__init__.py +13 -0
- endoreg_db/views/stats/stats_views.py +229 -0
- endoreg_db/views/video/__init__.py +59 -0
- endoreg_db/views/video/correction.py +530 -0
- endoreg_db/views/video/reimport.py +195 -0
- endoreg_db/views/video/segmentation.py +274 -0
- endoreg_db/views/video/task_status.py +49 -0
- endoreg_db/views/video/timeline.py +46 -0
- endoreg_db/views/video/video_analyze.py +52 -0
- endoreg_db/views/video/video_apply_mask.py +48 -0
- endoreg_db/views/video/video_correction.py +21 -0
- endoreg_db/views/video/video_download_processed.py +58 -0
- endoreg_db/views/video/video_examination_viewset.py +242 -0
- endoreg_db/views/video/video_meta.py +29 -0
- endoreg_db/views/video/video_processing_history.py +24 -0
- endoreg_db/views/video/video_remove_frames.py +48 -0
- endoreg_db/views/video/video_stream.py +306 -0
- endoreg_db/views.py +0 -3
- endoreg_db-0.8.6.3.dist-info/METADATA +383 -0
- endoreg_db-0.8.6.3.dist-info/RECORD +793 -0
- {endoreg_db-0.4.5.dist-info → endoreg_db-0.8.6.3.dist-info}/WHEEL +1 -1
- endoreg_db/data/active_model/data.yaml +0 -3
- endoreg_db/data/agl_service/data.yaml +0 -19
- endoreg_db/data/label/label-set/data.yaml +0 -18
- endoreg_db/management/commands/_load_model_template.py +0 -41
- endoreg_db/management/commands/delete_all.py +0 -18
- endoreg_db/management/commands/delete_legacy_images.py +0 -19
- endoreg_db/management/commands/delete_legacy_videos.py +0 -17
- endoreg_db/management/commands/extract_legacy_video_frames.py +0 -18
- endoreg_db/management/commands/fetch_legacy_image_dataset.py +0 -32
- endoreg_db/management/commands/fix_auth_permission.py +0 -20
- endoreg_db/management/commands/import_legacy_images.py +0 -94
- endoreg_db/management/commands/import_legacy_videos.py +0 -76
- endoreg_db/management/commands/load_active_model_data.py +0 -45
- endoreg_db/management/commands/load_endoscopy_processor_data.py +0 -45
- endoreg_db/management/commands/load_g_play_data.py +0 -113
- endoreg_db/management/commands/load_label_data.py +0 -67
- endoreg_db/management/commands/load_medication_indication_data.py +0 -63
- endoreg_db/management/commands/load_medication_indication_type_data.py +0 -41
- endoreg_db/management/commands/load_medication_schedule_data.py +0 -55
- endoreg_db/management/commands/load_network_data.py +0 -57
- endoreg_db/migrations/0002_anonymizedimagelabel_anonymousimageannotation_and_more.py +0 -55
- endoreg_db/migrations/0003_anonymousimageannotation_original_image_url_and_more.py +0 -39
- endoreg_db/migrations/0004_alter_rawpdffile_file.py +0 -20
- endoreg_db/migrations/0005_uploadedfile_alter_rawpdffile_file_anonymizedfile.py +0 -40
- endoreg_db/migrations/0006_alter_rawpdffile_file.py +0 -20
- endoreg_db/migrations/0007_networkdevicelogentry_datetime_and_more.py +0 -43
- endoreg_db/models/ai_model/__init__.py +0 -3
- endoreg_db/models/ai_model/active_model.py +0 -9
- endoreg_db/models/ai_model/model_meta.py +0 -24
- endoreg_db/models/annotation/__init__.py +0 -3
- endoreg_db/models/annotation/anonymized_image_annotation.py +0 -60
- endoreg_db/models/annotation/binary_classification_annotation_task.py +0 -80
- endoreg_db/models/annotation/image_classification.py +0 -27
- endoreg_db/models/center/center.py +0 -25
- endoreg_db/models/center/center_product.py +0 -34
- endoreg_db/models/center/center_resource.py +0 -19
- endoreg_db/models/center/center_waste.py +0 -11
- endoreg_db/models/data_file/__init__.py +0 -6
- endoreg_db/models/data_file/base_classes/__init__.py +0 -2
- endoreg_db/models/data_file/base_classes/abstract_frame.py +0 -51
- endoreg_db/models/data_file/base_classes/abstract_video.py +0 -201
- endoreg_db/models/data_file/frame.py +0 -45
- endoreg_db/models/data_file/import_classes/__init__.py +0 -32
- endoreg_db/models/data_file/import_classes/processing_functions/__init__.py +0 -35
- endoreg_db/models/data_file/import_classes/processing_functions/pdf.py +0 -28
- endoreg_db/models/data_file/import_classes/processing_functions/video.py +0 -260
- endoreg_db/models/data_file/import_classes/raw_pdf.py +0 -188
- endoreg_db/models/data_file/import_classes/raw_video.py +0 -343
- endoreg_db/models/data_file/metadata/__init__.py +0 -3
- endoreg_db/models/data_file/metadata/sensitive_meta.py +0 -31
- endoreg_db/models/data_file/metadata/video_meta.py +0 -133
- endoreg_db/models/data_file/report_file.py +0 -89
- endoreg_db/models/data_file/video/__init__.py +0 -7
- endoreg_db/models/data_file/video/import_meta.py +0 -25
- endoreg_db/models/data_file/video/video.py +0 -25
- endoreg_db/models/data_file/video_segment.py +0 -107
- endoreg_db/models/disease.py +0 -56
- endoreg_db/models/emission/__init__.py +0 -1
- endoreg_db/models/emission/emission_factor.py +0 -20
- endoreg_db/models/event.py +0 -22
- endoreg_db/models/examination/__init__.py +0 -4
- endoreg_db/models/examination/examination.py +0 -26
- endoreg_db/models/examination/examination_time.py +0 -27
- endoreg_db/models/examination/examination_time_type.py +0 -24
- endoreg_db/models/examination/examination_type.py +0 -18
- endoreg_db/models/hardware/__init__.py +0 -2
- endoreg_db/models/hardware/endoscope.py +0 -44
- endoreg_db/models/information_source.py +0 -29
- endoreg_db/models/laboratory/__init__.py +0 -1
- endoreg_db/models/laboratory/lab_value.py +0 -102
- endoreg_db/models/legacy_data/__init__.py +0 -3
- endoreg_db/models/legacy_data/image.py +0 -34
- endoreg_db/models/logging/__init__.py +0 -4
- endoreg_db/models/logging/agl_service.py +0 -19
- endoreg_db/models/logging/base.py +0 -22
- endoreg_db/models/logging/log_type.py +0 -23
- endoreg_db/models/logging/network_device.py +0 -24
- endoreg_db/models/medication/__init__.py +0 -1
- endoreg_db/models/medication/medication.py +0 -148
- endoreg_db/models/network/__init__.py +0 -3
- endoreg_db/models/network/agl_service.py +0 -38
- endoreg_db/models/network/network_device.py +0 -53
- endoreg_db/models/network/network_device_type.py +0 -23
- endoreg_db/models/other/distribution.py +0 -215
- endoreg_db/models/patient_examination/__init__.py +0 -35
- endoreg_db/models/permissions/__init__.py +0 -44
- endoreg_db/models/persons/__init__.py +0 -7
- endoreg_db/models/persons/examiner/__init__.py +0 -2
- endoreg_db/models/persons/examiner/examiner.py +0 -16
- endoreg_db/models/persons/examiner/examiner_type.py +0 -2
- endoreg_db/models/persons/patient/__init__.py +0 -8
- endoreg_db/models/persons/patient/case/case.py +0 -30
- endoreg_db/models/persons/patient/patient.py +0 -216
- endoreg_db/models/persons/patient/patient_disease.py +0 -16
- endoreg_db/models/persons/patient/patient_event.py +0 -22
- endoreg_db/models/persons/patient/patient_lab_sample.py +0 -106
- endoreg_db/models/persons/patient/patient_medication.py +0 -44
- endoreg_db/models/persons/patient/patient_medication_schedule.py +0 -28
- endoreg_db/models/persons/portal_user_information.py +0 -27
- endoreg_db/models/prediction/__init__.py +0 -2
- endoreg_db/models/prediction/image_classification.py +0 -37
- endoreg_db/models/prediction/video_prediction_meta.py +0 -244
- endoreg_db/models/product/__init__.py +0 -5
- endoreg_db/models/product/product.py +0 -97
- endoreg_db/models/product/product_group.py +0 -19
- endoreg_db/models/product/product_material.py +0 -24
- endoreg_db/models/questionnaires/__init__.py +0 -114
- endoreg_db/models/quiz/__init__.py +0 -2
- endoreg_db/models/quiz/quiz_answer.py +0 -41
- endoreg_db/models/quiz/quiz_question.py +0 -54
- endoreg_db/models/report_reader/__init__.py +0 -2
- endoreg_db/models/report_reader/report_reader_config.py +0 -53
- endoreg_db/models/rules/__init__.py +0 -5
- endoreg_db/queries/get/__init__.py +0 -6
- endoreg_db/queries/get/center.py +0 -42
- endoreg_db/queries/get/model.py +0 -13
- endoreg_db/queries/get/patient.py +0 -14
- endoreg_db/queries/get/patient_examination.py +0 -20
- endoreg_db/queries/get/report_file.py +0 -33
- endoreg_db/queries/get/video.py +0 -31
- endoreg_db/serializers/ai_model.py +0 -19
- endoreg_db/serializers/annotation.py +0 -17
- endoreg_db/serializers/center.py +0 -11
- endoreg_db/serializers/examination.py +0 -33
- endoreg_db/serializers/frame.py +0 -13
- endoreg_db/serializers/hardware.py +0 -21
- endoreg_db/serializers/label.py +0 -22
- endoreg_db/serializers/patient.py +0 -10
- endoreg_db/serializers/prediction.py +0 -15
- endoreg_db/serializers/report_file.py +0 -7
- endoreg_db/serializers/video.py +0 -27
- endoreg_db/tests.py +0 -3
- endoreg_db/utils/legacy_ocr.py +0 -201
- endoreg_db/utils/video_metadata.py +0 -87
- endoreg_db-0.4.5.dist-info/METADATA +0 -34
- endoreg_db-0.4.5.dist-info/RECORD +0 -316
- /endoreg_db/{data/distribution/numeric/.init → api/serializers/finding_descriptions.py} +0 -0
- /endoreg_db/{models/persons/patient/case/__init__.py → api/views/finding_descriptions.py} +0 -0
- /endoreg_db/{queries/get/annotation.py → config/__init__.py} +0 -0
- /endoreg_db/data/{label → ai_model_label}/label-type/data.yaml +0 -0
- /endoreg_db/data/{model_type → ai_model_type}/data.yaml +0 -0
- /endoreg_db/{queries/get/prediction.py → data/shift/m2.yaml} +0 -0
- /endoreg_db/{queries/get/video_import_meta.py → factories/__init__.py} +0 -0
- /endoreg_db/{queries/get/video_prediction_meta.py → helpers/__init__.py} +0 -0
- /endoreg_db/management/commands/{load_report_reader_flag.py → load_report_reader_flag_data.py} +0 -0
- /endoreg_db/models/{persons → administration/person}/person.py +0 -0
- /endoreg_db/models/{report_reader → media/pdf/report_reader}/report_reader_flag.py +0 -0
- /endoreg_db/models/{rules → rule}/rule_applicator.py +0 -0
- {endoreg_db-0.4.5.dist-info → endoreg_db-0.8.6.3.dist-info/licenses}/LICENSE +0 -0
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from django.urls import path
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from endoreg_db.views.label_video_segment.validate import (
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LabelVideoSegmentValidateView,
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BulkSegmentValidateView,
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VideoSegmentValidationCompleteView
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url_patterns = [
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# Einzelne Segment-Validierung
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# POST /api/label-video-segment/<int:segment_id>/validate/
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path(
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'label-video-segment/<int:segment_id>/validate/',
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LabelVideoSegmentValidateView.as_view(),
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name='label_video_segment_validate'
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),
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# Bulk-Validierung mehrerer Segmente
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path(
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name='label_video_segments_validate_bulk'
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),
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path(
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VideoSegmentValidationCompleteView.as_view(),
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name='video_segments_validate_complete'
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),
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]
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from django.urls import path
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from endoreg_db.views import (
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create_video_segment_annotation,
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update_label_video_segment,
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SensitiveMetaDetailView,
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video_segments_view,
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get_lvs_by_name_and_video_id
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url_patterns = [
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path(
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"lvs/by-label-name/<str:label_name>/by-video-id/<int:video_id>/",
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get_lvs_by_name_and_video_id,
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name='get_lvs_by_name_and_video_id'
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),
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path(
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'annotations/',
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create_video_segment_annotation,
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name='create_annotation'
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path(
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path(
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SensitiveMetaDetailView.as_view(),
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name='save_anonymization_annotation_video'
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),
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# Label Video Segment API endpoints
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path(
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'video-segments/',
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video_segments_view,
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name='video_segments'
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),
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path(
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'video-segments/<int:segment_id>/',
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video_segment_detail_view,
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name='video_segment_detail'
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),
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]
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endoreg_db/urls/media.py
ADDED
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from PIL.PdfParser import PdfStream
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from django.urls import path
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from endoreg_db.views.media import (
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VideoMediaView,
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PdfMediaView, # Alias to avoid conflict with legacy pdf.PDFMediaView
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video_segments_by_pk,
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video_segments_collection,
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video_segments_by_video,
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video_segment_detail,
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video_segments_stats,
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video_segment_validate,
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video_segments_validate_bulk,
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video_segments_validation_status,
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video_sensitive_metadata,
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video_sensitive_metadata_verify,
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pdf_sensitive_metadata,
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pdf_sensitive_metadata_verify,
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sensitive_metadata_list,
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pdf_sensitive_metadata_list,
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)
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from endoreg_db.views import (
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VideoStreamView,
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)
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from endoreg_db.views.pdf.reimport import PdfReimportView
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from endoreg_db.views.pdf.pdf_stream import PdfStreamView
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from endoreg_db.views.video.reimport import VideoReimportView
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from endoreg_db.views.video.correction import (
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VideoMetadataView,
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VideoProcessingHistoryView,
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VideoApplyMaskView,
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VideoRemoveFramesView,
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VideoCorrectionView,
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)
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# ---------------------------------------------------------------------------------------
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# ANNOTATION API ENDPOINTS
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#
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# New endpoints for segment annotation management that create user-source segments
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# POST /api/annotations/ - Create new annotation (creates user segment if type=segment)
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# PATCH /api/annotations/<id>/ - Update annotation (creates user segment if timing/label changed)
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# ---------------------------------------------------------------------------------------
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# Simplified Meta and Validation Endpoints
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urlpatterns = [
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# Video media endpoints
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path("media/videos/", VideoMediaView.as_view(), name="video-list"),
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path("media/videos/<int:pk>/", VideoStreamView.as_view(), name="video-detail-stream"), # Support ?type= params
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path("media/videos/<int:pk>/details/", VideoMediaView.as_view(), name="video-detail"), # JSON metadata
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path("media/videos/<int:pk>/stream/", VideoStreamView.as_view(), name="video-stream"), # Legacy support
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# Video Re-import API endpoint (modern media framework)
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# POST /api/media/videos/<int:pk>/reimport/
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# Re-imports a video file to regenerate metadata when OCR failed or data is incomplete
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55
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path("media/videos/<int:pk>/reimport/", VideoReimportView.as_view(), name="video-reimport"),
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# ---------------------------------------------------------------------------------------
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58
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# VIDEO CORRECTION API ENDPOINTS (Modern Media Framework - October 14, 2025)
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#
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# All video correction endpoints migrated to unified /api/media/videos/<pk>/ pattern
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# These endpoints enable video correction workflows (Phase 1.1):
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# - Analysis: Detect sensitive frames using MiniCPM-o 2.6 or OCR+LLM
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# - Masking: Apply device-specific masks or custom ROI masks
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# - Frame Removal: Remove sensitive frames from videos
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|
+
# - Reprocessing: Re-run entire anonymization pipeline
|
|
66
|
+
# - Metadata: View analysis results
|
|
67
|
+
# - History: Track all correction operations
|
|
68
|
+
# ---------------------------------------------------------------------------------------
|
|
69
|
+
|
|
70
|
+
# Video Correction API
|
|
71
|
+
# GET /api/media/videos/video-correction/{id}/ - Get video details for correction
|
|
72
|
+
path("media/videos/video-correction/<int:pk>", VideoCorrectionView.as_view(), name="video-correction"),
|
|
73
|
+
|
|
74
|
+
# Video Metadata API
|
|
75
|
+
# GET /api/media/videos/<int:pk>/metadata/
|
|
76
|
+
# Returns analysis results (sensitive frame count, ratio, frame IDs)
|
|
77
|
+
path("media/videos/<int:pk>/metadata/", VideoMetadataView.as_view(), name="video-metadata"),
|
|
78
|
+
|
|
79
|
+
# Video Processing History API
|
|
80
|
+
# GET /api/media/videos/<int:pk>/processing-history/
|
|
81
|
+
# Returns history of all processing operations (masking, frame removal, analysis)
|
|
82
|
+
path("media/videos/<int:pk>/processing-history/", VideoProcessingHistoryView.as_view(), name="video-processing-history"),
|
|
83
|
+
|
|
84
|
+
# Video Analysis API
|
|
85
|
+
# POST /api/media/videos/<int:pk>/analyze/
|
|
86
|
+
# Analyzes video for sensitive frames using MiniCPM-o 2.6 or OCR+LLM
|
|
87
|
+
# Body: { detection_method: 'minicpm'|'ocr_llm'|'hybrid', sample_interval: 30 }
|
|
88
|
+
|
|
89
|
+
# Video Masking API
|
|
90
|
+
# POST /api/media/videos/<int:pk>/apply-mask/
|
|
91
|
+
# Applies device mask or custom ROI mask to video
|
|
92
|
+
# Body: { mask_type: 'device'|'custom', device_name: 'olympus', roi: {...} }
|
|
93
|
+
path("media/videos/<int:pk>/apply-mask/", VideoApplyMaskView.as_view(), name="video-apply-mask"),
|
|
94
|
+
|
|
95
|
+
# Video Frame Removal API
|
|
96
|
+
# POST /api/media/videos/<int:pk>/remove-frames/
|
|
97
|
+
# Removes specified frames from video
|
|
98
|
+
# Body: { frame_list: [10,20,30] OR frame_ranges: '10-20,30' OR detection_method: 'automatic' }
|
|
99
|
+
path("media/videos/<int:pk>/remove-frames/", VideoRemoveFramesView.as_view(), name="video-remove-frames"),
|
|
100
|
+
|
|
101
|
+
# ---------------------------------------------------------------------------------------
|
|
102
|
+
# VIDEO SEGMENT API ENDPOINTS (Modern Media Framework - October 14, 2025)
|
|
103
|
+
#
|
|
104
|
+
# Unified segment management endpoints replacing legacy /api/video-segments/
|
|
105
|
+
# Collection: GET/POST all segments across videos
|
|
106
|
+
# Video-scoped: GET/POST segments for specific video
|
|
107
|
+
# Detail: GET/PATCH/DELETE individual segment
|
|
108
|
+
# ---------------------------------------------------------------------------------------
|
|
109
|
+
|
|
110
|
+
# Video Segments Collection API
|
|
111
|
+
# GET/POST /api/media/videos/segments/
|
|
112
|
+
# List all video segments across videos or create new segment
|
|
113
|
+
path("media/videos/segments/", video_segments_collection, name="video-segments-collection"),
|
|
114
|
+
|
|
115
|
+
# Video Segments Stats API
|
|
116
|
+
# GET /api/media/videos/segments/stats/
|
|
117
|
+
# Get statistics about video segments
|
|
118
|
+
path("media/videos/segments/stats/", video_segments_stats, name="video-segments-stats"),
|
|
119
|
+
|
|
120
|
+
# Video-Specific Segments API
|
|
121
|
+
# GET/POST /api/media/videos/<int:pk>/segments/
|
|
122
|
+
# List segments for specific video or create segment for video
|
|
123
|
+
path("media/videos/<int:pk>/segments/", video_segments_by_video, name="video-segments-by-video"),
|
|
124
|
+
|
|
125
|
+
# Segment Detail API
|
|
126
|
+
# GET /api/media/videos/<int:pk>/segments/<int:segment_id>/
|
|
127
|
+
# PATCH /api/media/videos/<int:pk>/segments/<int:segment_id>/
|
|
128
|
+
# DELETE /api/media/videos/<int:pk>/segments/<int:segment_id>/
|
|
129
|
+
# Manages individual segment operations
|
|
130
|
+
path("media/videos/<int:pk>/segments/<int:segment_id>/", video_segment_detail, name="video-segment-detail"),
|
|
131
|
+
|
|
132
|
+
# ---------------------------------------------------------------------------------------
|
|
133
|
+
# VIDEO SEGMENT VALIDATION API ENDPOINTS (Modern Media Framework - October 14, 2025)
|
|
134
|
+
#
|
|
135
|
+
# Unified validation endpoints replacing legacy /api/label-video-segment/*/validate/
|
|
136
|
+
# Single: POST validate individual segment
|
|
137
|
+
# Bulk: POST validate multiple segments
|
|
138
|
+
# Status: GET/POST validation status for all segments
|
|
139
|
+
# ---------------------------------------------------------------------------------------
|
|
140
|
+
|
|
141
|
+
# Single Segment Validation API
|
|
142
|
+
# POST /api/media/videos/<int:pk>/segments/<int:segment_id>/validate/
|
|
143
|
+
# Validates a single video segment
|
|
144
|
+
# Body: { "is_validated": true, "notes": "..." }
|
|
145
|
+
path("media/videos/<int:pk>/segments/<int:segment_id>/validate/", video_segment_validate, name="video-segment-validate"),
|
|
146
|
+
|
|
147
|
+
# Bulk Segment Validation API
|
|
148
|
+
# POST /api/media/videos/<int:pk>/segments/validate-bulk/
|
|
149
|
+
# Validates multiple segments at once
|
|
150
|
+
# Body: { "segment_ids": [1,2,3], "is_validated": true, "notes": "..." }
|
|
151
|
+
path("media/videos/<int:pk>/segments/validate-bulk/", video_segments_validate_bulk, name="video-segments-validate-bulk"),
|
|
152
|
+
|
|
153
|
+
# Segment Validation Status API
|
|
154
|
+
# GET /api/media/videos/<int:pk>/segments/validation-status/
|
|
155
|
+
# Returns validation statistics for all segments
|
|
156
|
+
# POST /api/media/videos/<int:pk>/segments/validation-status/
|
|
157
|
+
# Marks all segments (or filtered by label) as validated
|
|
158
|
+
# Body: { "label_name": "polyp", "notes": "..." }
|
|
159
|
+
path("media/videos/<int:pk>/segments/validation-status/", video_segments_validation_status, name="video-segments-validation-status"),
|
|
160
|
+
|
|
161
|
+
# ---------------------------------------------------------------------------------------
|
|
162
|
+
# SENSITIVE METADATA ENDPOINTS (Modern Media Framework)
|
|
163
|
+
# ---------------------------------------------------------------------------------------
|
|
164
|
+
|
|
165
|
+
# Video Sensitive Metadata (Resource-Scoped)
|
|
166
|
+
# GET/PATCH /api/media/videos/<pk>/sensitive-metadata/
|
|
167
|
+
# Get or update sensitive patient data for a video
|
|
168
|
+
path(
|
|
169
|
+
"media/videos/<int:pk>/sensitive-metadata/",
|
|
170
|
+
video_sensitive_metadata,
|
|
171
|
+
name="video-sensitive-metadata"
|
|
172
|
+
),
|
|
173
|
+
|
|
174
|
+
# POST /api/media/videos/<pk>/sensitive-metadata/verify/
|
|
175
|
+
# Update verification state (dob_verified, names_verified)
|
|
176
|
+
path(
|
|
177
|
+
"media/videos/<int:pk>/sensitive-metadata/verify/",
|
|
178
|
+
video_sensitive_metadata_verify,
|
|
179
|
+
name="video-sensitive-metadata-verify"
|
|
180
|
+
),
|
|
181
|
+
|
|
182
|
+
# PDF Sensitive Metadata (Resource-Scoped)
|
|
183
|
+
# GET/PATCH /api/media/pdfs/<pk>/sensitive-metadata/
|
|
184
|
+
# Get or update sensitive patient data for a PDF
|
|
185
|
+
path(
|
|
186
|
+
"media/pdfs/<int:pk>/sensitive-metadata/",
|
|
187
|
+
pdf_sensitive_metadata,
|
|
188
|
+
name="pdf-sensitive-metadata"
|
|
189
|
+
),
|
|
190
|
+
|
|
191
|
+
# POST /api/media/pdfs/<pk>/sensitive-metadata/verify/
|
|
192
|
+
# Update verification state (dob_verified, names_verified)
|
|
193
|
+
path(
|
|
194
|
+
"media/pdfs/<int:pk>/sensitive-metadata/verify/",
|
|
195
|
+
pdf_sensitive_metadata_verify,
|
|
196
|
+
name="pdf-sensitive-metadata-verify"
|
|
197
|
+
),
|
|
198
|
+
|
|
199
|
+
# List Endpoints (Collection-Level)
|
|
200
|
+
# GET /api/media/sensitive-metadata/
|
|
201
|
+
# List all sensitive metadata (combined PDFs and Videos)
|
|
202
|
+
# Supports filtering: ?content_type=pdf|video&verified=true&search=name
|
|
203
|
+
path(
|
|
204
|
+
"media/sensitive-metadata/",
|
|
205
|
+
sensitive_metadata_list,
|
|
206
|
+
name="sensitive-metadata-list"
|
|
207
|
+
),
|
|
208
|
+
|
|
209
|
+
# GET /api/media/pdfs/sensitive-metadata/
|
|
210
|
+
# List sensitive metadata for PDFs only
|
|
211
|
+
# Replaces legacy /api/pdf/sensitivemeta/list/
|
|
212
|
+
path(
|
|
213
|
+
"media/pdfs/sensitive-metadata/",
|
|
214
|
+
pdf_sensitive_metadata_list,
|
|
215
|
+
name="pdf-sensitive-metadata-list"
|
|
216
|
+
),
|
|
217
|
+
|
|
218
|
+
# PDF media endpoints
|
|
219
|
+
path("media/pdfs/", PdfMediaView.as_view(), name="pdf-list"),
|
|
220
|
+
path("media/pdfs/<int:pk>/", PdfMediaView.as_view(), name="pdf-detail"),
|
|
221
|
+
path("media/pdfs/<int:pk>/stream/", PdfStreamView.as_view(), name="pdf-stream"), # Support ?type=raw|anonymized params
|
|
222
|
+
# PDF Re-import API endpoint (modern media framework)
|
|
223
|
+
# POST /api/media/pdfs/<int:pk>/reimport/
|
|
224
|
+
# Re-imports a PDF file to regenerate metadata when OCR failed or data is incomplete
|
|
225
|
+
path("media/pdfs/<int:pk>/reimport/", PdfReimportView.as_view(), name="pdf-reimport"),
|
|
226
|
+
]
|
|
227
|
+
# ---------------------------------------------------------------------------------------
|
|
@@ -0,0 +1,19 @@
|
|
|
1
|
+
from endoreg_db.views import (
|
|
2
|
+
GenderViewSet,
|
|
3
|
+
CenterViewSet,
|
|
4
|
+
PatientViewSet,
|
|
5
|
+
PatientFindingViewSet
|
|
6
|
+
)
|
|
7
|
+
from rest_framework.routers import DefaultRouter
|
|
8
|
+
from django.urls import path, include
|
|
9
|
+
|
|
10
|
+
router = DefaultRouter()
|
|
11
|
+
router.register(r'patients', PatientViewSet)
|
|
12
|
+
router.register(r'centers', CenterViewSet)
|
|
13
|
+
router.register(r'genders', GenderViewSet)
|
|
14
|
+
router.register(r'patient-findings', PatientFindingViewSet)
|
|
15
|
+
|
|
16
|
+
urlpatterns = [
|
|
17
|
+
path('', include(router.urls)),
|
|
18
|
+
path('check_pe_exist/<int:pk>/', PatientViewSet.as_view({'get': 'check_pe_exist'}), name='check_pe_exist'),
|
|
19
|
+
]
|
|
@@ -0,0 +1,48 @@
|
|
|
1
|
+
from django.urls import path
|
|
2
|
+
from endoreg_db.views import (
|
|
3
|
+
ReportListView,
|
|
4
|
+
ReportWithSecureUrlView,
|
|
5
|
+
ReportFileMetadataView,
|
|
6
|
+
)
|
|
7
|
+
|
|
8
|
+
url_patterns = [ # ---------------------------------------------------------------------------------------
|
|
9
|
+
# REPORT SERVICE ENDPOINTS
|
|
10
|
+
#
|
|
11
|
+
# Neue API-Endpunkte für den Report-Service mit sicheren URLs
|
|
12
|
+
#
|
|
13
|
+
# Diese Endpunkte ermöglichen es dem Frontend (UniversalReportViewer),
|
|
14
|
+
# Reports mit zeitlich begrenzten, sicheren URLs zu laden und anzuzeigen.
|
|
15
|
+
#
|
|
16
|
+
# Verwendung im Frontend:
|
|
17
|
+
# - loadReportWithSecureUrl(reportId)
|
|
18
|
+
# - generateSecureUrl(reportId, fileType)
|
|
19
|
+
# - validateCurrentUrl()
|
|
20
|
+
#
|
|
21
|
+
# ---------------------------------------------------------------------------------------
|
|
22
|
+
|
|
23
|
+
# API-Endpunkt für paginierte Report-Listen mit Filterung
|
|
24
|
+
# GET /api/reports/?page=1&page_size=20&status=pending&file_type=pdf&patient_name=John
|
|
25
|
+
# Lädt eine paginierte Liste aller Reports mit optionalen Filtern
|
|
26
|
+
path('reports/',
|
|
27
|
+
ReportListView.as_view(),
|
|
28
|
+
name='report_list'
|
|
29
|
+
),
|
|
30
|
+
|
|
31
|
+
# API-Endpunkt für Reports mit automatischer sicherer URL-Generierung
|
|
32
|
+
# GET /api/reports/{report_id}/with-secure-url/
|
|
33
|
+
# Lädt Report-Daten inklusive Metadaten und generiert automatisch eine sichere URL
|
|
34
|
+
path(
|
|
35
|
+
'reports/<int:report_id>/with-secure-url/',
|
|
36
|
+
ReportWithSecureUrlView.as_view(),
|
|
37
|
+
name='report_with_secure_url'
|
|
38
|
+
),
|
|
39
|
+
|
|
40
|
+
# API-Endpunkt für Report-Datei-Metadaten
|
|
41
|
+
# GET /api/reports/{report_id}/file-metadata/
|
|
42
|
+
# Gibt Datei-Metadaten zurück (Größe, Typ, Datum, etc.)
|
|
43
|
+
path(
|
|
44
|
+
'reports/<int:report_id>/file-metadata/',
|
|
45
|
+
ReportFileMetadataView.as_view(),
|
|
46
|
+
name='report_file_metadata'
|
|
47
|
+
),
|
|
48
|
+
]
|
|
@@ -0,0 +1,13 @@
|
|
|
1
|
+
from django.urls import path, include
|
|
2
|
+
from rest_framework.routers import DefaultRouter
|
|
3
|
+
from endoreg_db.views.requirement.lookup import LookupViewSet
|
|
4
|
+
from endoreg_db.views.requirement.evaluate import evaluate_requirements
|
|
5
|
+
|
|
6
|
+
|
|
7
|
+
router = DefaultRouter()
|
|
8
|
+
router.register(r"lookup", LookupViewSet, basename="lookup/")
|
|
9
|
+
|
|
10
|
+
urlpatterns = [
|
|
11
|
+
path("", include(router.urls)),
|
|
12
|
+
path("evaluate-requirements/", evaluate_requirements, name="evaluate-requirements/"),
|
|
13
|
+
]
|
|
File without changes
|
endoreg_db/urls/stats.py
ADDED
|
@@ -0,0 +1,46 @@
|
|
|
1
|
+
from django.urls import path
|
|
2
|
+
|
|
3
|
+
from endoreg_db.views import (
|
|
4
|
+
ExaminationStatsView,
|
|
5
|
+
VideoSegmentStatsView,
|
|
6
|
+
SensitiveMetaStatsView,
|
|
7
|
+
GeneralStatsView,
|
|
8
|
+
)
|
|
9
|
+
|
|
10
|
+
url_patterns = [
|
|
11
|
+
# ---------------------------------------------------------------------------------------
|
|
12
|
+
# STATISTICS API ENDPOINTS
|
|
13
|
+
#
|
|
14
|
+
# Diese Endpunkte stellen Dashboard-Statistiken bereit für das Frontend
|
|
15
|
+
# ---------------------------------------------------------------------------------------
|
|
16
|
+
|
|
17
|
+
# Examination Statistics API
|
|
18
|
+
# GET /api/examinations/stats/
|
|
19
|
+
# Liefert Statistiken über Examinations und PatientExaminations
|
|
20
|
+
path('examinations/stats/', ExaminationStatsView.as_view(), name='examination_stats'),
|
|
21
|
+
|
|
22
|
+
# Video Segment Statistics API
|
|
23
|
+
# GET /api/video-segment/stats/ (Note: singular 'segment' to match frontend)
|
|
24
|
+
# Liefert Statistiken über Video-Segmente und Label-Verteilung
|
|
25
|
+
path('video-segment/stats/', VideoSegmentStatsView.as_view(), name='video_segment_stats'),
|
|
26
|
+
|
|
27
|
+
# Alternative Video Segments Statistics API (plural version for compatibility)
|
|
28
|
+
# GET /api/video-segments/stats/
|
|
29
|
+
path('video-segments/stats/', VideoSegmentStatsView.as_view(), name='video_segments_stats'),
|
|
30
|
+
|
|
31
|
+
# Sensitive Meta Statistics API
|
|
32
|
+
# GET /api/video/sensitivemeta/stats/
|
|
33
|
+
# Liefert Statistiken über SensitiveMeta-Einträge und Verifikationsstatus
|
|
34
|
+
path('video/sensitivemeta/stats/', SensitiveMetaStatsView.as_view(), name='sensitive_meta_stats'),
|
|
35
|
+
|
|
36
|
+
# General Dashboard Statistics API
|
|
37
|
+
# GET /api/stats/
|
|
38
|
+
# Liefert allgemeine Übersichtsstatistiken für das Dashboard
|
|
39
|
+
path('stats/', GeneralStatsView.as_view(), name='general_stats'),
|
|
40
|
+
|
|
41
|
+
path(
|
|
42
|
+
'video-segments/stats/',
|
|
43
|
+
VideoSegmentStatsView.as_view(),
|
|
44
|
+
name='video_segments_stats'
|
|
45
|
+
),
|
|
46
|
+
]
|
|
@@ -0,0 +1,20 @@
|
|
|
1
|
+
from django.urls import path
|
|
2
|
+
|
|
3
|
+
from endoreg_db.views import (
|
|
4
|
+
UploadFileView,
|
|
5
|
+
UploadStatusView,
|
|
6
|
+
)
|
|
7
|
+
|
|
8
|
+
urlpatterns = [
|
|
9
|
+
# Upload endpoints
|
|
10
|
+
path(
|
|
11
|
+
'upload/',
|
|
12
|
+
UploadFileView.as_view(),
|
|
13
|
+
name='video_upload'
|
|
14
|
+
),
|
|
15
|
+
path(
|
|
16
|
+
'upload/<uuid:id>/status',
|
|
17
|
+
UploadStatusView.as_view(),
|
|
18
|
+
name='upload_status'
|
|
19
|
+
),
|
|
20
|
+
]
|
endoreg_db/urls/video.py
ADDED
|
@@ -0,0 +1,61 @@
|
|
|
1
|
+
from django.urls import path
|
|
2
|
+
|
|
3
|
+
from endoreg_db.views import (
|
|
4
|
+
SensitiveMetaDetailView,
|
|
5
|
+
VideoLabelView,
|
|
6
|
+
# Note: VideoStreamView moved to modern media framework. See: endoreg_db/urls/media.py
|
|
7
|
+
# Note: All Video Correction Views moved to modern media framework. See: endoreg_db/urls/media.py
|
|
8
|
+
)
|
|
9
|
+
|
|
10
|
+
url_patterns = [
|
|
11
|
+
# Video Label segments API endpoint
|
|
12
|
+
# GET /api/videos/<int:video_id>/labels/<str:label_name>/
|
|
13
|
+
# Retrieves time segments and frame predictions for a specific label on a video
|
|
14
|
+
path(
|
|
15
|
+
'videos/<int:video_id>/labels/<str:label_name>/',
|
|
16
|
+
VideoLabelView.as_view(),
|
|
17
|
+
name='video_label_segments'
|
|
18
|
+
),
|
|
19
|
+
|
|
20
|
+
# ---------------------------------------------------------------------------------------
|
|
21
|
+
# VIDEO STREAMING - MOVED TO MODERN MEDIA FRAMEWORK
|
|
22
|
+
#
|
|
23
|
+
# Video streaming endpoint has been migrated to the media framework
|
|
24
|
+
# as of October 14, 2025. Please use the new endpoints:
|
|
25
|
+
#
|
|
26
|
+
# OLD → NEW:
|
|
27
|
+
# GET /api/videostream/<pk>/ → GET /api/media/videos/<pk>/
|
|
28
|
+
# GET /api/videostream/<pk>/ → GET /api/media/videos/<pk>/stream/
|
|
29
|
+
#
|
|
30
|
+
# See: endoreg_db/urls/media.py for new URL registrations
|
|
31
|
+
# ---------------------------------------------------------------------------------------
|
|
32
|
+
|
|
33
|
+
# Note: Video Re-import moved to modern media framework
|
|
34
|
+
# See: endoreg_db/urls/media.py - POST /api/media/videos/<int:pk>/reimport/
|
|
35
|
+
|
|
36
|
+
# Video Sensitive Meta endpoints (for video anonymization)
|
|
37
|
+
# GET /api/video/sensitivemeta/<int:sensitive_meta_id>/
|
|
38
|
+
# PATCH /api/video/sensitivemeta/<int:sensitive_meta_id>/
|
|
39
|
+
path(
|
|
40
|
+
'video/sensitivemeta/<int:sensitive_meta_id>/',
|
|
41
|
+
SensitiveMetaDetailView.as_view(),
|
|
42
|
+
name='video_sensitive_meta_detail'
|
|
43
|
+
),
|
|
44
|
+
|
|
45
|
+
# ---------------------------------------------------------------------------------------
|
|
46
|
+
# VIDEO CORRECTION API ENDPOINTS - MOVED TO MODERN MEDIA FRAMEWORK
|
|
47
|
+
#
|
|
48
|
+
# All video correction endpoints have been migrated to the modern media framework
|
|
49
|
+
# as of October 14, 2025. Please use the new endpoints:
|
|
50
|
+
#
|
|
51
|
+
# OLD → NEW:
|
|
52
|
+
# GET /api/video-metadata/<id>/ → GET /api/media/videos/<pk>/metadata/
|
|
53
|
+
# GET /api/video-processing-history/<id>/ → GET /api/media/videos/<pk>/processing-history/
|
|
54
|
+
# POST /api/video-analyze/<id>/ → POST /api/media/videos/<pk>/analyze/
|
|
55
|
+
# POST /api/video-apply-mask/<id>/ → POST /api/media/videos/<pk>/apply-mask/
|
|
56
|
+
# POST /api/video-remove-frames/<id>/ → POST /api/media/videos/<pk>/remove-frames/
|
|
57
|
+
# POST /api/video-reprocess/<id>/ → POST /api/media/videos/<pk>/reprocess/
|
|
58
|
+
#
|
|
59
|
+
# See: endoreg_db/urls/media.py for new URL registrations
|
|
60
|
+
# ---------------------------------------------------------------------------------------
|
|
61
|
+
]
|
endoreg_db/urls.py
ADDED
|
@@ -0,0 +1,9 @@
|
|
|
1
|
+
from django.urls import include, path
|
|
2
|
+
|
|
3
|
+
# Import the package-level URL patterns (defined in endoreg_db/urls/__init__.py)
|
|
4
|
+
from endoreg_db.urls import urlpatterns as api_urlpatterns
|
|
5
|
+
|
|
6
|
+
# Expose API under /api/
|
|
7
|
+
urlpatterns = [
|
|
8
|
+
path("api/", include((api_urlpatterns, "endoreg_db"), namespace="api")),
|
|
9
|
+
]
|
endoreg_db/utils/__init__.py
CHANGED
|
@@ -1 +1,88 @@
|
|
|
1
|
-
|
|
1
|
+
"""Module for utility classes and functions."""
|
|
2
|
+
|
|
3
|
+
# --- Imports from submodules ---
|
|
4
|
+
|
|
5
|
+
# dataloader
|
|
6
|
+
from endoreg_db.utils.video.ffmpeg_wrapper import assemble_video_from_frames, get_stream_info, transcode_video, transcode_videofile_if_required
|
|
7
|
+
from .dataloader import load_model_data_from_yaml
|
|
8
|
+
|
|
9
|
+
# dates
|
|
10
|
+
from .dates import ensure_aware_datetime, random_day_by_month_year, random_day_by_year
|
|
11
|
+
|
|
12
|
+
# env
|
|
13
|
+
from .env import DEBUG, DJANGO_SETTINGS_MODULE, get_env_var
|
|
14
|
+
|
|
15
|
+
# file_operations
|
|
16
|
+
from .file_operations import copy_with_progress, get_uuid_filename, rename_file_uuid
|
|
17
|
+
|
|
18
|
+
# hashs
|
|
19
|
+
from .hashs import (
|
|
20
|
+
DJANGO_NAME_SALT,
|
|
21
|
+
get_examiner_hash,
|
|
22
|
+
get_hash_string,
|
|
23
|
+
get_patient_examination_hash,
|
|
24
|
+
get_pdf_hash,
|
|
25
|
+
get_video_hash,
|
|
26
|
+
)
|
|
27
|
+
|
|
28
|
+
# names
|
|
29
|
+
from .names import (
|
|
30
|
+
create_mock_examiner_name,
|
|
31
|
+
create_mock_patient_name,
|
|
32
|
+
guess_name_gender,
|
|
33
|
+
)
|
|
34
|
+
|
|
35
|
+
# parse_and_generate_yaml
|
|
36
|
+
from .parse_and_generate_yaml import collect_center_names
|
|
37
|
+
|
|
38
|
+
# paths
|
|
39
|
+
from .paths import data_paths
|
|
40
|
+
|
|
41
|
+
# pydantic_models
|
|
42
|
+
from .pydantic_models import DbConfig
|
|
43
|
+
|
|
44
|
+
# validate_endo_roi
|
|
45
|
+
from .validate_endo_roi import validate_endo_roi
|
|
46
|
+
|
|
47
|
+
# ffmpeg_wrapper
|
|
48
|
+
from .video.ffmpeg_wrapper import (
|
|
49
|
+
extract_frames,
|
|
50
|
+
)
|
|
51
|
+
from .video import (
|
|
52
|
+
split_video
|
|
53
|
+
)
|
|
54
|
+
|
|
55
|
+
|
|
56
|
+
# --- Exports ---
|
|
57
|
+
|
|
58
|
+
__all__ = [
|
|
59
|
+
"collect_center_names",
|
|
60
|
+
"copy_with_progress",
|
|
61
|
+
"create_mock_examiner_name",
|
|
62
|
+
"create_mock_patient_name",
|
|
63
|
+
"data_paths",
|
|
64
|
+
"DbConfig",
|
|
65
|
+
"DEBUG",
|
|
66
|
+
"DJANGO_NAME_SALT",
|
|
67
|
+
"DJANGO_SETTINGS_MODULE",
|
|
68
|
+
"ensure_aware_datetime",
|
|
69
|
+
"get_env_var",
|
|
70
|
+
"get_examiner_hash",
|
|
71
|
+
"get_hash_string",
|
|
72
|
+
"get_patient_examination_hash",
|
|
73
|
+
"get_pdf_hash",
|
|
74
|
+
"get_uuid_filename",
|
|
75
|
+
"get_video_hash",
|
|
76
|
+
"guess_name_gender",
|
|
77
|
+
"load_model_data_from_yaml",
|
|
78
|
+
"random_day_by_month_year",
|
|
79
|
+
"random_day_by_year",
|
|
80
|
+
"rename_file_uuid",
|
|
81
|
+
"validate_endo_roi",
|
|
82
|
+
"assemble_video_from_frames", # Updated name
|
|
83
|
+
"get_stream_info",
|
|
84
|
+
"transcode_video",
|
|
85
|
+
"transcode_videofile_if_required", # Added
|
|
86
|
+
"extract_frames", # Added
|
|
87
|
+
]
|
|
88
|
+
|
|
@@ -1,8 +1,5 @@
|
|
|
1
|
-
from .
|
|
1
|
+
from endoreg_db.models import ModelMeta
|
|
2
2
|
|
|
3
|
-
# get latest model meta by model name
|
|
4
|
-
|
|
5
|
-
# TODO MOVE THIS TO A QUERY FILE
|
|
6
3
|
def get_latest_model_meta_by_model_name(model_name):
|
|
7
4
|
model_meta = ModelMeta.objects.filter(name=model_name).order_by('-version').first()
|
|
8
5
|
return model_meta
|