endoreg-db 0.4.5__py3-none-any.whl → 0.8.6.3__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- endoreg_db/admin.py +90 -1
- endoreg_db/api_urls.py +4 -0
- endoreg_db/apps.py +12 -0
- endoreg_db/assets/dummy_model.ckpt +1 -0
- endoreg_db/codemods/readme.md +88 -0
- endoreg_db/codemods/rename_datetime_fields.py +92 -0
- endoreg_db/config/env.py +101 -0
- endoreg_db/data/__init__.py +76 -4
- endoreg_db/data/ai_model/data.yaml +7 -0
- endoreg_db/data/{label → ai_model_label}/label/data.yaml +27 -1
- endoreg_db/data/ai_model_label/label/polyp_classification.yaml +52 -0
- endoreg_db/data/ai_model_label/label-set/data.yaml +40 -0
- endoreg_db/data/ai_model_label/label-set/polyp_classifications.yaml +25 -0
- endoreg_db/data/ai_model_meta/default_multilabel_classification.yaml +27 -0
- endoreg_db/data/ai_model_video_segmentation_label/base_segmentation.yaml +176 -0
- endoreg_db/data/ai_model_video_segmentation_labelset/data.yaml +20 -0
- endoreg_db/data/center/data.yaml +40 -9
- endoreg_db/data/center_shift/ukw.yaml +9 -0
- endoreg_db/data/contraindication/bleeding.yaml +11 -0
- endoreg_db/data/db_summary.csv +58 -0
- endoreg_db/data/db_summary.xlsx +0 -0
- endoreg_db/data/disease/misc.yaml +1 -2
- endoreg_db/data/disease_classification/chronic_kidney_disease.yaml +2 -2
- endoreg_db/data/disease_classification_choice/chronic_kidney_disease.yaml +6 -6
- endoreg_db/data/distribution/numeric/data.yaml +14 -0
- endoreg_db/data/endoscope/data.yaml +93 -0
- endoreg_db/data/endoscopy_processor/data.yaml +3 -0
- endoreg_db/data/event/cardiology.yaml +0 -13
- endoreg_db/data/examination/examinations/data.yaml +34 -28
- endoreg_db/data/examination/type/data.yaml +12 -0
- endoreg_db/data/examination_indication/endoscopy.yaml +424 -0
- endoreg_db/data/examination_indication_classification/endoscopy.yaml +160 -0
- endoreg_db/data/examination_indication_classification_choice/endoscopy.yaml +101 -0
- endoreg_db/data/examination_requirement_set/colonoscopy.yaml +15 -0
- endoreg_db/data/finding/anatomy_colon.yaml +128 -0
- endoreg_db/data/finding/colonoscopy.yaml +40 -0
- endoreg_db/data/finding/colonoscopy_bowel_prep.yaml +56 -0
- endoreg_db/data/finding/complication.yaml +16 -0
- endoreg_db/data/finding/data.yaml +105 -0
- endoreg_db/data/finding/examination_setting.yaml +16 -0
- endoreg_db/data/finding/medication_related.yaml +18 -0
- endoreg_db/data/finding/outcome.yaml +12 -0
- endoreg_db/data/finding_classification/colonoscopy_bowel_preparation.yaml +95 -0
- endoreg_db/data/finding_classification/colonoscopy_jnet.yaml +22 -0
- endoreg_db/data/finding_classification/colonoscopy_kudo.yaml +25 -0
- endoreg_db/data/finding_classification/colonoscopy_lesion_circularity.yaml +20 -0
- endoreg_db/data/finding_classification/colonoscopy_lesion_planarity.yaml +24 -0
- endoreg_db/data/finding_classification/colonoscopy_lesion_size.yaml +68 -0
- endoreg_db/data/finding_classification/colonoscopy_lesion_surface.yaml +20 -0
- endoreg_db/data/finding_classification/colonoscopy_location.yaml +80 -0
- endoreg_db/data/finding_classification/colonoscopy_lst.yaml +21 -0
- endoreg_db/data/finding_classification/colonoscopy_nice.yaml +20 -0
- endoreg_db/data/finding_classification/colonoscopy_paris.yaml +26 -0
- endoreg_db/data/finding_classification/colonoscopy_sano.yaml +22 -0
- endoreg_db/data/finding_classification/colonoscopy_summary.yaml +53 -0
- endoreg_db/data/finding_classification/complication_generic.yaml +25 -0
- endoreg_db/data/finding_classification/examination_setting_generic.yaml +40 -0
- endoreg_db/data/finding_classification/histology_colo.yaml +51 -0
- endoreg_db/data/finding_classification/intervention_required.yaml +26 -0
- endoreg_db/data/finding_classification/medication_related.yaml +23 -0
- endoreg_db/data/finding_classification/visualized.yaml +33 -0
- endoreg_db/data/finding_classification_choice/bowel_preparation.yaml +78 -0
- endoreg_db/data/finding_classification_choice/colon_lesion_circularity_default.yaml +32 -0
- endoreg_db/data/finding_classification_choice/colon_lesion_jnet.yaml +15 -0
- endoreg_db/data/finding_classification_choice/colon_lesion_kudo.yaml +23 -0
- endoreg_db/data/finding_classification_choice/colon_lesion_lst.yaml +15 -0
- endoreg_db/data/finding_classification_choice/colon_lesion_nice.yaml +17 -0
- endoreg_db/data/finding_classification_choice/colon_lesion_paris.yaml +57 -0
- endoreg_db/data/finding_classification_choice/colon_lesion_planarity_default.yaml +49 -0
- endoreg_db/data/finding_classification_choice/colon_lesion_sano.yaml +14 -0
- endoreg_db/data/finding_classification_choice/colon_lesion_surface_intact_default.yaml +36 -0
- endoreg_db/data/finding_classification_choice/colonoscopy_location.yaml +229 -0
- endoreg_db/data/finding_classification_choice/colonoscopy_not_complete_reason.yaml +19 -0
- endoreg_db/data/finding_classification_choice/colonoscopy_size.yaml +82 -0
- endoreg_db/data/finding_classification_choice/colonoscopy_summary_worst_finding.yaml +15 -0
- endoreg_db/data/finding_classification_choice/complication_generic_types.yaml +15 -0
- endoreg_db/data/finding_classification_choice/examination_setting_generic_types.yaml +15 -0
- endoreg_db/data/finding_classification_choice/histology.yaml +24 -0
- endoreg_db/data/finding_classification_choice/histology_polyp.yaml +20 -0
- endoreg_db/data/finding_classification_choice/outcome.yaml +19 -0
- endoreg_db/data/finding_classification_choice/yes_no_na.yaml +11 -0
- endoreg_db/data/finding_classification_type/colonoscopy_basic.yaml +48 -0
- endoreg_db/data/finding_intervention/endoscopy.yaml +43 -0
- endoreg_db/data/finding_intervention/endoscopy_colonoscopy.yaml +168 -0
- endoreg_db/data/finding_intervention/endoscopy_egd.yaml +128 -0
- endoreg_db/data/finding_intervention/endoscopy_ercp.yaml +32 -0
- endoreg_db/data/finding_intervention/endoscopy_eus_lower.yaml +9 -0
- endoreg_db/data/finding_intervention/endoscopy_eus_upper.yaml +36 -0
- endoreg_db/data/finding_intervention_type/endoscopy.yaml +15 -0
- endoreg_db/data/finding_morphology_classification_type/colonoscopy.yaml +79 -0
- endoreg_db/data/finding_type/data.yaml +43 -0
- endoreg_db/data/gender/data.yaml +24 -0
- endoreg_db/data/information_source/annotation.yaml +6 -0
- endoreg_db/data/information_source/endoscopy_guidelines.yaml +7 -0
- endoreg_db/data/information_source/prediction.yaml +7 -0
- endoreg_db/data/information_source_type/data.yaml +8 -0
- endoreg_db/data/lab_value/cardiac_enzymes.yaml +7 -1
- endoreg_db/data/lab_value/coagulation.yaml +6 -1
- endoreg_db/data/lab_value/electrolytes.yaml +39 -1
- endoreg_db/data/lab_value/gastrointestinal_function.yaml +12 -0
- endoreg_db/data/lab_value/hematology.yaml +17 -2
- endoreg_db/data/lab_value/hormones.yaml +6 -0
- endoreg_db/data/lab_value/lipids.yaml +12 -3
- endoreg_db/data/lab_value/misc.yaml +48 -2
- endoreg_db/data/lab_value/renal_function.yaml +2 -1
- endoreg_db/data/lx_client_tag/base.yaml +54 -0
- endoreg_db/data/lx_client_type/base.yaml +30 -0
- endoreg_db/data/lx_permission/base.yaml +24 -0
- endoreg_db/data/lx_permission/endoreg.yaml +52 -0
- endoreg_db/data/medication/anticoagulation.yaml +5 -5
- endoreg_db/data/medication/tah.yaml +5 -5
- endoreg_db/data/medication_indication/anticoagulation.yaml +48 -53
- endoreg_db/data/medication_intake_time/base.yaml +4 -4
- endoreg_db/data/names_first/first_names.yaml +54 -0
- endoreg_db/data/names_last/last_names.yaml +51 -0
- endoreg_db/data/network_device/data.yaml +30 -0
- endoreg_db/data/organ/data.yaml +29 -0
- endoreg_db/data/pdf_type/data.yaml +27 -9
- endoreg_db/data/qualification/endoscopy.yaml +36 -0
- endoreg_db/data/qualification/m2.yaml +39 -0
- endoreg_db/data/qualification/outpatient_clinic.yaml +35 -0
- endoreg_db/data/qualification/sonography.yaml +36 -0
- endoreg_db/data/qualification_type/base.yaml +29 -0
- endoreg_db/data/report_reader_flag/rkh-histology-generic.yaml +10 -0
- endoreg_db/data/report_reader_flag/ukw-examination-generic.yaml +4 -0
- endoreg_db/data/report_reader_flag/ukw-histology-generic.yaml +5 -0
- endoreg_db/data/requirement/age.yaml +26 -0
- endoreg_db/data/requirement/colonoscopy_baseline_austria.yaml +45 -0
- endoreg_db/data/requirement/disease_cardiovascular.yaml +79 -0
- endoreg_db/data/requirement/disease_classification_choice_cardiovascular.yaml +41 -0
- endoreg_db/data/requirement/disease_hepatology.yaml +12 -0
- endoreg_db/data/requirement/disease_misc.yaml +12 -0
- endoreg_db/data/requirement/disease_renal.yaml +96 -0
- endoreg_db/data/requirement/endoscopy_bleeding_risk.yaml +59 -0
- endoreg_db/data/requirement/event_cardiology.yaml +251 -0
- endoreg_db/data/requirement/event_requirements.yaml +145 -0
- endoreg_db/data/requirement/finding_colon_polyp.yaml +50 -0
- endoreg_db/data/requirement/gender.yaml +25 -0
- endoreg_db/data/requirement/lab_value.yaml +441 -0
- endoreg_db/data/requirement/medication.yaml +93 -0
- endoreg_db/data/requirement_operator/age.yaml +13 -0
- endoreg_db/data/requirement_operator/lab_operators.yaml +129 -0
- endoreg_db/data/requirement_operator/model_operators.yaml +96 -0
- endoreg_db/data/requirement_set/01_endoscopy_generic.yaml +48 -0
- endoreg_db/data/requirement_set/colonoscopy_austria_screening.yaml +57 -0
- endoreg_db/data/requirement_set/endoscopy_bleeding_risk.yaml +52 -0
- endoreg_db/data/requirement_set_type/data.yaml +20 -0
- endoreg_db/data/requirement_type/requirement_types.yaml +165 -0
- endoreg_db/data/risk/bleeding.yaml +26 -0
- endoreg_db/data/risk/thrombosis.yaml +37 -0
- endoreg_db/data/risk_type/data.yaml +27 -0
- endoreg_db/data/setup_config.yaml +38 -0
- endoreg_db/data/shift/endoscopy.yaml +21 -0
- endoreg_db/data/shift_type/base.yaml +35 -0
- endoreg_db/data/tag/requirement_set_tags.yaml +11 -0
- endoreg_db/data/unit/concentration.yaml +23 -0
- endoreg_db/data/unit/time.yaml +36 -1
- endoreg_db/exceptions.py +19 -0
- endoreg_db/forms/__init__.py +3 -1
- endoreg_db/forms/examination_form.py +11 -0
- endoreg_db/forms/patient_finding_intervention_form.py +18 -0
- endoreg_db/forms/patient_form.py +27 -0
- endoreg_db/forms/questionnaires/__init__.py +1 -1
- endoreg_db/forms/questionnaires/tto_questionnaire.py +19 -19
- endoreg_db/helpers/count_db.py +45 -0
- endoreg_db/helpers/data_loader.py +208 -0
- endoreg_db/helpers/default_objects.py +378 -0
- endoreg_db/helpers/download_segmentation_model.py +31 -0
- endoreg_db/helpers/interact.py +6 -0
- endoreg_db/helpers/test_video_helper.py +119 -0
- endoreg_db/logger_conf.py +140 -0
- endoreg_db/management/__init__.py +1 -0
- endoreg_db/management/commands/__init__.py +1 -0
- endoreg_db/management/commands/anonymize_video.py +0 -0
- endoreg_db/management/commands/check_auth.py +125 -0
- endoreg_db/management/commands/create_model_meta_from_huggingface.py +115 -0
- endoreg_db/management/commands/create_multilabel_model_meta.py +214 -0
- endoreg_db/management/commands/fix_missing_patient_data.py +172 -0
- endoreg_db/management/commands/fix_video_paths.py +165 -0
- endoreg_db/management/commands/import_fallback_video.py +203 -0
- endoreg_db/management/commands/import_report.py +298 -0
- endoreg_db/management/commands/import_video.py +423 -0
- endoreg_db/management/commands/import_video_with_classification.py +367 -0
- endoreg_db/management/commands/init_default_ai_model.py +112 -0
- endoreg_db/management/commands/load_ai_model_data.py +58 -26
- endoreg_db/management/commands/load_ai_model_label_data.py +59 -0
- endoreg_db/management/commands/load_base_db_data.py +174 -118
- endoreg_db/management/commands/load_center_data.py +46 -21
- endoreg_db/management/commands/{load_logging_data.py → load_contraindication_data.py} +4 -2
- endoreg_db/management/commands/load_disease_data.py +29 -7
- endoreg_db/management/commands/{load_endoscope_type_data.py → load_endoscope_data.py} +30 -7
- endoreg_db/management/commands/load_examination_indication_data.py +86 -0
- endoreg_db/management/commands/load_finding_data.py +128 -0
- endoreg_db/management/commands/load_green_endoscopy_wuerzburg_data.py +0 -1
- endoreg_db/management/commands/load_information_source.py +13 -7
- endoreg_db/management/commands/load_lab_value_data.py +3 -3
- endoreg_db/management/commands/load_medication_data.py +83 -21
- endoreg_db/management/commands/load_name_data.py +37 -0
- endoreg_db/management/commands/{load_medication_intake_time_data.py → load_organ_data.py} +7 -5
- endoreg_db/management/commands/load_qualification_data.py +59 -0
- endoreg_db/management/commands/load_requirement_data.py +180 -0
- endoreg_db/management/commands/load_risk_data.py +56 -0
- endoreg_db/management/commands/load_shift_data.py +60 -0
- endoreg_db/management/commands/load_tag_data.py +57 -0
- endoreg_db/management/commands/register_ai_model.py +1 -1
- endoreg_db/management/commands/setup_endoreg_db.py +381 -0
- endoreg_db/management/commands/start_filewatcher.py +106 -0
- endoreg_db/management/commands/storage_management.py +548 -0
- endoreg_db/management/commands/summarize_db_content.py +189 -0
- endoreg_db/management/commands/validate_video.py +204 -0
- endoreg_db/management/commands/validate_video_files.py +161 -0
- endoreg_db/management/commands/video_validation.py +22 -0
- endoreg_db/mermaid/Overall_flow_patient_finding_intervention.md +10 -0
- endoreg_db/mermaid/anonymized_image_annotation.md +20 -0
- endoreg_db/mermaid/binary_classification_annotation.md +50 -0
- endoreg_db/mermaid/classification.md +8 -0
- endoreg_db/mermaid/examination.md +8 -0
- endoreg_db/mermaid/findings.md +7 -0
- endoreg_db/mermaid/image_classification.md +28 -0
- endoreg_db/mermaid/interventions.md +8 -0
- endoreg_db/mermaid/morphology.md +8 -0
- endoreg_db/mermaid/patient_creation.md +14 -0
- endoreg_db/mermaid/video_segmentation_annotation.md +17 -0
- endoreg_db/migrations/0001_initial.py +1234 -944
- endoreg_db/migrations/0002_add_video_correction_models.py +52 -0
- endoreg_db/migrations/0003_add_center_display_name.py +30 -0
- endoreg_db/models/__init__.py +339 -53
- endoreg_db/models/administration/__init__.py +116 -0
- endoreg_db/models/administration/ai/__init__.py +9 -0
- endoreg_db/models/administration/ai/active_model.py +35 -0
- endoreg_db/models/administration/ai/ai_model.py +156 -0
- endoreg_db/models/{ai_model → administration/ai}/model_type.py +19 -4
- endoreg_db/models/administration/case/__init__.py +19 -0
- endoreg_db/models/administration/case/case.py +114 -0
- endoreg_db/models/{case_template → administration/case/case_template}/__init__.py +10 -1
- endoreg_db/models/{case_template → administration/case/case_template}/case_template.py +60 -16
- endoreg_db/models/{case_template → administration/case/case_template}/case_template_rule.py +6 -13
- endoreg_db/models/{case_template → administration/case/case_template}/case_template_rule_value.py +21 -8
- endoreg_db/models/{case_template → administration/case/case_template}/case_template_type.py +1 -3
- endoreg_db/models/{center → administration/center}/__init__.py +9 -0
- endoreg_db/models/administration/center/center.py +67 -0
- endoreg_db/models/administration/center/center_product.py +64 -0
- endoreg_db/models/administration/center/center_resource.py +49 -0
- endoreg_db/models/administration/center/center_shift.py +88 -0
- endoreg_db/models/administration/center/center_waste.py +30 -0
- endoreg_db/models/administration/permissions/__init__.py +44 -0
- endoreg_db/models/administration/person/__init__.py +24 -0
- endoreg_db/models/administration/person/employee/__init__.py +3 -0
- endoreg_db/models/administration/person/employee/employee.py +35 -0
- endoreg_db/models/administration/person/employee/employee_qualification.py +39 -0
- endoreg_db/models/administration/person/employee/employee_type.py +42 -0
- endoreg_db/models/administration/person/examiner/__init__.py +4 -0
- endoreg_db/models/administration/person/examiner/examiner.py +54 -0
- endoreg_db/models/administration/person/names/__init__.py +0 -0
- endoreg_db/models/{persons → administration/person/names}/first_name.py +1 -1
- endoreg_db/models/{persons → administration/person/names}/last_name.py +2 -3
- endoreg_db/models/administration/person/patient/__init__.py +5 -0
- endoreg_db/models/administration/person/patient/patient.py +460 -0
- endoreg_db/models/administration/person/profession/__init__.py +24 -0
- endoreg_db/models/administration/person/user/__init__.py +5 -0
- endoreg_db/models/administration/person/user/portal_user_information.py +37 -0
- endoreg_db/models/administration/product/__init__.py +14 -0
- endoreg_db/models/administration/product/product.py +97 -0
- endoreg_db/models/administration/product/product_group.py +39 -0
- endoreg_db/models/administration/product/product_material.py +54 -0
- endoreg_db/models/{product → administration/product}/product_weight.py +21 -0
- endoreg_db/models/{product → administration/product}/reference_product.py +44 -13
- endoreg_db/models/administration/qualification/__init__.py +7 -0
- endoreg_db/models/administration/qualification/qualification.py +37 -0
- endoreg_db/models/administration/qualification/qualification_type.py +35 -0
- endoreg_db/models/administration/shift/__init__.py +9 -0
- endoreg_db/models/administration/shift/scheduled_days.py +69 -0
- endoreg_db/models/administration/shift/shift.py +51 -0
- endoreg_db/models/administration/shift/shift_type.py +108 -0
- endoreg_db/models/label/__init__.py +24 -1
- endoreg_db/models/label/annotation/__init__.py +12 -0
- endoreg_db/models/label/annotation/image_classification.py +84 -0
- endoreg_db/models/label/annotation/video_segmentation_annotation.py +66 -0
- endoreg_db/models/label/label.py +53 -54
- endoreg_db/models/label/label_set.py +53 -0
- endoreg_db/models/label/label_type.py +29 -0
- endoreg_db/models/label/label_video_segment/__init__.py +3 -0
- endoreg_db/models/label/label_video_segment/_create_from_video.py +41 -0
- endoreg_db/models/label/label_video_segment/label_video_segment.py +511 -0
- endoreg_db/models/label/video_segmentation_label.py +31 -0
- endoreg_db/models/label/video_segmentation_labelset.py +27 -0
- endoreg_db/models/media/__init__.py +16 -0
- endoreg_db/models/media/frame/__init__.py +3 -0
- endoreg_db/models/media/frame/frame.py +111 -0
- endoreg_db/models/media/pdf/__init__.py +11 -0
- endoreg_db/models/media/pdf/raw_pdf.py +757 -0
- endoreg_db/models/media/pdf/report_file.py +162 -0
- endoreg_db/models/media/pdf/report_reader/__init__.py +7 -0
- endoreg_db/models/media/pdf/report_reader/report_reader_config.py +77 -0
- endoreg_db/models/media/video/__init__.py +8 -0
- endoreg_db/models/media/video/create_from_file.py +358 -0
- endoreg_db/models/media/video/pipe_1.py +213 -0
- endoreg_db/models/media/video/pipe_2.py +105 -0
- endoreg_db/models/media/video/refactor_plan.md +0 -0
- endoreg_db/models/media/video/video_file.py +825 -0
- endoreg_db/models/media/video/video_file_ai.py +443 -0
- endoreg_db/models/media/video/video_file_anonymize.py +349 -0
- endoreg_db/models/media/video/video_file_frames/__init__.py +47 -0
- endoreg_db/models/media/video/video_file_frames/_bulk_create_frames.py +22 -0
- endoreg_db/models/media/video/video_file_frames/_create_frame_object.py +23 -0
- endoreg_db/models/media/video/video_file_frames/_delete_frames.py +104 -0
- endoreg_db/models/media/video/video_file_frames/_extract_frames.py +174 -0
- endoreg_db/models/media/video/video_file_frames/_get_frame.py +28 -0
- endoreg_db/models/media/video/video_file_frames/_get_frame_number.py +27 -0
- endoreg_db/models/media/video/video_file_frames/_get_frame_path.py +20 -0
- endoreg_db/models/media/video/video_file_frames/_get_frame_paths.py +27 -0
- endoreg_db/models/media/video/video_file_frames/_get_frame_range.py +34 -0
- endoreg_db/models/media/video/video_file_frames/_get_frames.py +27 -0
- endoreg_db/models/media/video/video_file_frames/_initialize_frames.py +129 -0
- endoreg_db/models/media/video/video_file_frames/_manage_frame_range.py +141 -0
- endoreg_db/models/media/video/video_file_frames/_mark_frames_extracted_status.py +65 -0
- endoreg_db/models/media/video/video_file_frames.py +0 -0
- endoreg_db/models/media/video/video_file_io.py +168 -0
- endoreg_db/models/media/video/video_file_meta/__init__.py +22 -0
- endoreg_db/models/media/video/video_file_meta/get_crop_template.py +45 -0
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- endoreg_db/models/medical/hardware/endoscope.py +65 -0
- endoreg_db/models/{hardware → medical/hardware}/endoscopy_processor.py +68 -29
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- endoreg_db/models/{rules → rule}/rule_type.py +0 -2
- endoreg_db/models/{rules → rule}/ruleset.py +0 -2
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- endoreg_db/views/pdf/pdf_stream.py +187 -0
- endoreg_db/views/pdf/reimport.py +177 -0
- endoreg_db/views/report/__init__.py +9 -0
- endoreg_db/views/report/report_list.py +112 -0
- endoreg_db/views/report/report_with_secure_url.py +28 -0
- endoreg_db/views/report/start_examination.py +7 -0
- endoreg_db/views/requirement/__init__.py +10 -0
- endoreg_db/views/requirement/evaluate.py +279 -0
- endoreg_db/views/requirement/lookup.py +367 -0
- endoreg_db/views/requirement/lookup_store.py +252 -0
- endoreg_db/views/requirement_lookup/lookup.py +0 -0
- endoreg_db/views/requirement_lookup/lookup_store.py +0 -0
- endoreg_db/views/stats/__init__.py +13 -0
- endoreg_db/views/stats/stats_views.py +229 -0
- endoreg_db/views/video/__init__.py +59 -0
- endoreg_db/views/video/correction.py +530 -0
- endoreg_db/views/video/reimport.py +195 -0
- endoreg_db/views/video/segmentation.py +274 -0
- endoreg_db/views/video/task_status.py +49 -0
- endoreg_db/views/video/timeline.py +46 -0
- endoreg_db/views/video/video_analyze.py +52 -0
- endoreg_db/views/video/video_apply_mask.py +48 -0
- endoreg_db/views/video/video_correction.py +21 -0
- endoreg_db/views/video/video_download_processed.py +58 -0
- endoreg_db/views/video/video_examination_viewset.py +242 -0
- endoreg_db/views/video/video_meta.py +29 -0
- endoreg_db/views/video/video_processing_history.py +24 -0
- endoreg_db/views/video/video_remove_frames.py +48 -0
- endoreg_db/views/video/video_stream.py +306 -0
- endoreg_db/views.py +0 -3
- endoreg_db-0.8.6.3.dist-info/METADATA +383 -0
- endoreg_db-0.8.6.3.dist-info/RECORD +793 -0
- {endoreg_db-0.4.5.dist-info → endoreg_db-0.8.6.3.dist-info}/WHEEL +1 -1
- endoreg_db/data/active_model/data.yaml +0 -3
- endoreg_db/data/agl_service/data.yaml +0 -19
- endoreg_db/data/label/label-set/data.yaml +0 -18
- endoreg_db/management/commands/_load_model_template.py +0 -41
- endoreg_db/management/commands/delete_all.py +0 -18
- endoreg_db/management/commands/delete_legacy_images.py +0 -19
- endoreg_db/management/commands/delete_legacy_videos.py +0 -17
- endoreg_db/management/commands/extract_legacy_video_frames.py +0 -18
- endoreg_db/management/commands/fetch_legacy_image_dataset.py +0 -32
- endoreg_db/management/commands/fix_auth_permission.py +0 -20
- endoreg_db/management/commands/import_legacy_images.py +0 -94
- endoreg_db/management/commands/import_legacy_videos.py +0 -76
- endoreg_db/management/commands/load_active_model_data.py +0 -45
- endoreg_db/management/commands/load_endoscopy_processor_data.py +0 -45
- endoreg_db/management/commands/load_g_play_data.py +0 -113
- endoreg_db/management/commands/load_label_data.py +0 -67
- endoreg_db/management/commands/load_medication_indication_data.py +0 -63
- endoreg_db/management/commands/load_medication_indication_type_data.py +0 -41
- endoreg_db/management/commands/load_medication_schedule_data.py +0 -55
- endoreg_db/management/commands/load_network_data.py +0 -57
- endoreg_db/migrations/0002_anonymizedimagelabel_anonymousimageannotation_and_more.py +0 -55
- endoreg_db/migrations/0003_anonymousimageannotation_original_image_url_and_more.py +0 -39
- endoreg_db/migrations/0004_alter_rawpdffile_file.py +0 -20
- endoreg_db/migrations/0005_uploadedfile_alter_rawpdffile_file_anonymizedfile.py +0 -40
- endoreg_db/migrations/0006_alter_rawpdffile_file.py +0 -20
- endoreg_db/migrations/0007_networkdevicelogentry_datetime_and_more.py +0 -43
- endoreg_db/models/ai_model/__init__.py +0 -3
- endoreg_db/models/ai_model/active_model.py +0 -9
- endoreg_db/models/ai_model/model_meta.py +0 -24
- endoreg_db/models/annotation/__init__.py +0 -3
- endoreg_db/models/annotation/anonymized_image_annotation.py +0 -60
- endoreg_db/models/annotation/binary_classification_annotation_task.py +0 -80
- endoreg_db/models/annotation/image_classification.py +0 -27
- endoreg_db/models/center/center.py +0 -25
- endoreg_db/models/center/center_product.py +0 -34
- endoreg_db/models/center/center_resource.py +0 -19
- endoreg_db/models/center/center_waste.py +0 -11
- endoreg_db/models/data_file/__init__.py +0 -6
- endoreg_db/models/data_file/base_classes/__init__.py +0 -2
- endoreg_db/models/data_file/base_classes/abstract_frame.py +0 -51
- endoreg_db/models/data_file/base_classes/abstract_video.py +0 -201
- endoreg_db/models/data_file/frame.py +0 -45
- endoreg_db/models/data_file/import_classes/__init__.py +0 -32
- endoreg_db/models/data_file/import_classes/processing_functions/__init__.py +0 -35
- endoreg_db/models/data_file/import_classes/processing_functions/pdf.py +0 -28
- endoreg_db/models/data_file/import_classes/processing_functions/video.py +0 -260
- endoreg_db/models/data_file/import_classes/raw_pdf.py +0 -188
- endoreg_db/models/data_file/import_classes/raw_video.py +0 -343
- endoreg_db/models/data_file/metadata/__init__.py +0 -3
- endoreg_db/models/data_file/metadata/sensitive_meta.py +0 -31
- endoreg_db/models/data_file/metadata/video_meta.py +0 -133
- endoreg_db/models/data_file/report_file.py +0 -89
- endoreg_db/models/data_file/video/__init__.py +0 -7
- endoreg_db/models/data_file/video/import_meta.py +0 -25
- endoreg_db/models/data_file/video/video.py +0 -25
- endoreg_db/models/data_file/video_segment.py +0 -107
- endoreg_db/models/disease.py +0 -56
- endoreg_db/models/emission/__init__.py +0 -1
- endoreg_db/models/emission/emission_factor.py +0 -20
- endoreg_db/models/event.py +0 -22
- endoreg_db/models/examination/__init__.py +0 -4
- endoreg_db/models/examination/examination.py +0 -26
- endoreg_db/models/examination/examination_time.py +0 -27
- endoreg_db/models/examination/examination_time_type.py +0 -24
- endoreg_db/models/examination/examination_type.py +0 -18
- endoreg_db/models/hardware/__init__.py +0 -2
- endoreg_db/models/hardware/endoscope.py +0 -44
- endoreg_db/models/information_source.py +0 -29
- endoreg_db/models/laboratory/__init__.py +0 -1
- endoreg_db/models/laboratory/lab_value.py +0 -102
- endoreg_db/models/legacy_data/__init__.py +0 -3
- endoreg_db/models/legacy_data/image.py +0 -34
- endoreg_db/models/logging/__init__.py +0 -4
- endoreg_db/models/logging/agl_service.py +0 -19
- endoreg_db/models/logging/base.py +0 -22
- endoreg_db/models/logging/log_type.py +0 -23
- endoreg_db/models/logging/network_device.py +0 -24
- endoreg_db/models/medication/__init__.py +0 -1
- endoreg_db/models/medication/medication.py +0 -148
- endoreg_db/models/network/__init__.py +0 -3
- endoreg_db/models/network/agl_service.py +0 -38
- endoreg_db/models/network/network_device.py +0 -53
- endoreg_db/models/network/network_device_type.py +0 -23
- endoreg_db/models/other/distribution.py +0 -215
- endoreg_db/models/patient_examination/__init__.py +0 -35
- endoreg_db/models/permissions/__init__.py +0 -44
- endoreg_db/models/persons/__init__.py +0 -7
- endoreg_db/models/persons/examiner/__init__.py +0 -2
- endoreg_db/models/persons/examiner/examiner.py +0 -16
- endoreg_db/models/persons/examiner/examiner_type.py +0 -2
- endoreg_db/models/persons/patient/__init__.py +0 -8
- endoreg_db/models/persons/patient/case/case.py +0 -30
- endoreg_db/models/persons/patient/patient.py +0 -216
- endoreg_db/models/persons/patient/patient_disease.py +0 -16
- endoreg_db/models/persons/patient/patient_event.py +0 -22
- endoreg_db/models/persons/patient/patient_lab_sample.py +0 -106
- endoreg_db/models/persons/patient/patient_medication.py +0 -44
- endoreg_db/models/persons/patient/patient_medication_schedule.py +0 -28
- endoreg_db/models/persons/portal_user_information.py +0 -27
- endoreg_db/models/prediction/__init__.py +0 -2
- endoreg_db/models/prediction/image_classification.py +0 -37
- endoreg_db/models/prediction/video_prediction_meta.py +0 -244
- endoreg_db/models/product/__init__.py +0 -5
- endoreg_db/models/product/product.py +0 -97
- endoreg_db/models/product/product_group.py +0 -19
- endoreg_db/models/product/product_material.py +0 -24
- endoreg_db/models/questionnaires/__init__.py +0 -114
- endoreg_db/models/quiz/__init__.py +0 -2
- endoreg_db/models/quiz/quiz_answer.py +0 -41
- endoreg_db/models/quiz/quiz_question.py +0 -54
- endoreg_db/models/report_reader/__init__.py +0 -2
- endoreg_db/models/report_reader/report_reader_config.py +0 -53
- endoreg_db/models/rules/__init__.py +0 -5
- endoreg_db/queries/get/__init__.py +0 -6
- endoreg_db/queries/get/center.py +0 -42
- endoreg_db/queries/get/model.py +0 -13
- endoreg_db/queries/get/patient.py +0 -14
- endoreg_db/queries/get/patient_examination.py +0 -20
- endoreg_db/queries/get/report_file.py +0 -33
- endoreg_db/queries/get/video.py +0 -31
- endoreg_db/serializers/ai_model.py +0 -19
- endoreg_db/serializers/annotation.py +0 -17
- endoreg_db/serializers/center.py +0 -11
- endoreg_db/serializers/examination.py +0 -33
- endoreg_db/serializers/frame.py +0 -13
- endoreg_db/serializers/hardware.py +0 -21
- endoreg_db/serializers/label.py +0 -22
- endoreg_db/serializers/patient.py +0 -10
- endoreg_db/serializers/prediction.py +0 -15
- endoreg_db/serializers/report_file.py +0 -7
- endoreg_db/serializers/video.py +0 -27
- endoreg_db/tests.py +0 -3
- endoreg_db/utils/legacy_ocr.py +0 -201
- endoreg_db/utils/video_metadata.py +0 -87
- endoreg_db-0.4.5.dist-info/METADATA +0 -34
- endoreg_db-0.4.5.dist-info/RECORD +0 -316
- /endoreg_db/{data/distribution/numeric/.init → api/serializers/finding_descriptions.py} +0 -0
- /endoreg_db/{models/persons/patient/case/__init__.py → api/views/finding_descriptions.py} +0 -0
- /endoreg_db/{queries/get/annotation.py → config/__init__.py} +0 -0
- /endoreg_db/data/{label → ai_model_label}/label-type/data.yaml +0 -0
- /endoreg_db/data/{model_type → ai_model_type}/data.yaml +0 -0
- /endoreg_db/{queries/get/prediction.py → data/shift/m2.yaml} +0 -0
- /endoreg_db/{queries/get/video_import_meta.py → factories/__init__.py} +0 -0
- /endoreg_db/{queries/get/video_prediction_meta.py → helpers/__init__.py} +0 -0
- /endoreg_db/management/commands/{load_report_reader_flag.py → load_report_reader_flag_data.py} +0 -0
- /endoreg_db/models/{persons → administration/person}/person.py +0 -0
- /endoreg_db/models/{report_reader → media/pdf/report_reader}/report_reader_flag.py +0 -0
- /endoreg_db/models/{rules → rule}/rule_applicator.py +0 -0
- {endoreg_db-0.4.5.dist-info → endoreg_db-0.8.6.3.dist-info/licenses}/LICENSE +0 -0
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migrations.CreateModel(
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migrations.CreateModel(
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('normal_range_gender_dependent', models.BooleanField(default=False)),
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('normal_range_special_case', models.BooleanField(default=False)),
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('default_date_value_distribution', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='default_date_value_distribution', to='endoreg_db.datevaluedistribution')),
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migrations.CreateModel(
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name='
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name='Medication',
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('adapt_to_renal_function', models.BooleanField(default=False)),
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('adapt_to_hepatic_function', models.BooleanField(default=False)),
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('adapt_to_indication', models.BooleanField(default=False)),
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('adapt_to_age', models.BooleanField(default=False)),
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('adapt_to_weight', models.BooleanField(default=False)),
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('adapt_to_risk', models.BooleanField(default=False)),
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migrations.CreateModel(
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name='
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name='MedicationIndicationType',
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migrations.CreateModel(
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name='
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name='MedicationIntakeTime',
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297
|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
385
|
-
('
|
|
386
|
-
('
|
|
387
|
-
('
|
|
388
|
-
('fps', models.FloatField()),
|
|
389
|
-
('duration', models.FloatField()),
|
|
390
|
-
('width', models.IntegerField()),
|
|
391
|
-
('height', models.IntegerField()),
|
|
392
|
-
('endoscope_image_x', models.IntegerField(blank=True, null=True)),
|
|
393
|
-
('endoscope_image_y', models.IntegerField(blank=True, null=True)),
|
|
394
|
-
('endoscope_image_width', models.IntegerField(blank=True, null=True)),
|
|
395
|
-
('endoscope_image_height', models.IntegerField(blank=True, null=True)),
|
|
396
|
-
('frames_extracted', models.BooleanField(default=False)),
|
|
397
|
-
('meta', models.JSONField(blank=True, null=True)),
|
|
398
|
-
('file', models.FileField(blank=True, null=True, upload_to='legacy_videos')),
|
|
399
|
-
('center', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.center')),
|
|
400
|
-
('endoscopy_processor', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.endoscopyprocessor')),
|
|
298
|
+
('name', models.CharField(max_length=255, unique=True)),
|
|
299
|
+
('repeats', models.CharField(default='daily', max_length=20)),
|
|
300
|
+
('time', models.TimeField()),
|
|
401
301
|
],
|
|
402
|
-
options={
|
|
403
|
-
'abstract': False,
|
|
404
|
-
},
|
|
405
302
|
),
|
|
406
303
|
migrations.CreateModel(
|
|
407
|
-
name='
|
|
304
|
+
name='ModelType',
|
|
408
305
|
fields=[
|
|
409
306
|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
410
307
|
('name', models.CharField(max_length=255)),
|
|
411
|
-
('description', models.
|
|
412
|
-
('created', models.DateTimeField(auto_now_add=True)),
|
|
413
|
-
('updated', models.DateTimeField(auto_now=True)),
|
|
308
|
+
('description', models.TextField(blank=True, null=True)),
|
|
414
309
|
],
|
|
415
|
-
options={
|
|
416
|
-
'ordering': ['name'],
|
|
417
|
-
},
|
|
418
310
|
),
|
|
419
311
|
migrations.CreateModel(
|
|
420
|
-
name='
|
|
312
|
+
name='MultipleCategoricalValueDistribution',
|
|
421
313
|
fields=[
|
|
422
314
|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
423
|
-
('name', models.CharField(max_length=
|
|
424
|
-
('
|
|
425
|
-
('
|
|
426
|
-
('
|
|
315
|
+
('name', models.CharField(max_length=100)),
|
|
316
|
+
('categories', models.JSONField()),
|
|
317
|
+
('min_count', models.IntegerField()),
|
|
318
|
+
('max_count', models.IntegerField()),
|
|
319
|
+
('count_distribution_type', models.CharField(choices=[('uniform', 'Uniform'), ('normal', 'Normal')], max_length=20)),
|
|
320
|
+
('count_mean', models.FloatField(blank=True, null=True)),
|
|
321
|
+
('count_std_dev', models.FloatField(blank=True, null=True)),
|
|
427
322
|
],
|
|
323
|
+
options={
|
|
324
|
+
'abstract': False,
|
|
325
|
+
},
|
|
428
326
|
),
|
|
429
327
|
migrations.CreateModel(
|
|
430
|
-
name='
|
|
328
|
+
name='NumericValueDistribution',
|
|
431
329
|
fields=[
|
|
432
330
|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
433
|
-
('name', models.CharField(max_length=
|
|
434
|
-
('
|
|
435
|
-
('
|
|
436
|
-
('
|
|
437
|
-
('adapt_to_hepatic_function', models.BooleanField(default=False)),
|
|
438
|
-
('adapt_to_indication', models.BooleanField(default=False)),
|
|
439
|
-
('adapt_to_age', models.BooleanField(default=False)),
|
|
440
|
-
('adapt_to_weight', models.BooleanField(default=False)),
|
|
441
|
-
('adapt_to_risk', models.BooleanField(default=False)),
|
|
331
|
+
('name', models.CharField(max_length=100)),
|
|
332
|
+
('distribution_type', models.CharField(choices=[('uniform', 'Uniform'), ('normal', 'Normal'), ('skewed_normal', 'Skewed Normal')], max_length=20)),
|
|
333
|
+
('min_descriptor', models.CharField(max_length=20)),
|
|
334
|
+
('max_descriptor', models.CharField(max_length=20)),
|
|
442
335
|
],
|
|
336
|
+
options={
|
|
337
|
+
'abstract': False,
|
|
338
|
+
},
|
|
443
339
|
),
|
|
444
340
|
migrations.CreateModel(
|
|
445
|
-
name='
|
|
341
|
+
name='PatientLabSampleType',
|
|
446
342
|
fields=[
|
|
447
343
|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
448
|
-
('name', models.CharField(max_length=255
|
|
449
|
-
('
|
|
450
|
-
('diseases', models.ManyToManyField(to='endoreg_db.disease')),
|
|
451
|
-
('events', models.ManyToManyField(to='endoreg_db.event')),
|
|
344
|
+
('name', models.CharField(max_length=255)),
|
|
345
|
+
('description', models.TextField(blank=True, null=True)),
|
|
452
346
|
],
|
|
453
347
|
),
|
|
454
348
|
migrations.CreateModel(
|
|
455
|
-
name='
|
|
349
|
+
name='PdfType',
|
|
456
350
|
fields=[
|
|
457
351
|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
458
|
-
('name', models.CharField(max_length=255
|
|
459
|
-
('name_de', models.CharField(blank=True, max_length=255, null=True)),
|
|
460
|
-
('name_en', models.CharField(blank=True, max_length=255, null=True)),
|
|
352
|
+
('name', models.CharField(max_length=255)),
|
|
461
353
|
],
|
|
462
354
|
),
|
|
463
355
|
migrations.CreateModel(
|
|
464
|
-
name='
|
|
356
|
+
name='Product',
|
|
465
357
|
fields=[
|
|
466
358
|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
467
359
|
('name', models.CharField(max_length=255)),
|
|
468
|
-
('name_de', models.CharField(blank=True, max_length=255, null=True)),
|
|
469
|
-
('name_en', models.CharField(blank=True, max_length=255, null=True)),
|
|
470
|
-
('repeats', models.CharField(default='daily', max_length=20)),
|
|
471
|
-
('time', models.TimeField()),
|
|
472
360
|
],
|
|
473
361
|
),
|
|
474
362
|
migrations.CreateModel(
|
|
475
|
-
name='
|
|
363
|
+
name='ProductGroup',
|
|
476
364
|
fields=[
|
|
477
365
|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
478
366
|
('name', models.CharField(max_length=255)),
|
|
479
|
-
('name_de', models.CharField(blank=True, max_length=255, null=True)),
|
|
480
|
-
('name_en', models.CharField(blank=True, max_length=255, null=True)),
|
|
481
|
-
('description', models.TextField(blank=True, null=True)),
|
|
482
|
-
('therapy_duration_d', models.FloatField(blank=True, null=True)),
|
|
483
|
-
('dose', models.FloatField()),
|
|
484
|
-
('intake_times', models.ManyToManyField(to='endoreg_db.medicationintaketime')),
|
|
485
|
-
('medication', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.medication')),
|
|
486
367
|
],
|
|
487
368
|
),
|
|
488
369
|
migrations.CreateModel(
|
|
489
|
-
name='
|
|
370
|
+
name='Profession',
|
|
490
371
|
fields=[
|
|
491
372
|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
492
|
-
('name', models.CharField(max_length=
|
|
493
|
-
('version', models.CharField(max_length=255)),
|
|
494
|
-
('weights', models.FileField(upload_to='weights/')),
|
|
373
|
+
('name', models.CharField(max_length=100)),
|
|
495
374
|
('description', models.TextField(blank=True, null=True)),
|
|
496
|
-
('date_created', models.DateTimeField(auto_now_add=True)),
|
|
497
|
-
('labelset', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='models', to='endoreg_db.labelset')),
|
|
498
375
|
],
|
|
499
376
|
),
|
|
500
377
|
migrations.CreateModel(
|
|
501
|
-
name='
|
|
378
|
+
name='Qualification',
|
|
502
379
|
fields=[
|
|
503
380
|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
504
|
-
('name', models.CharField(max_length=255)),
|
|
381
|
+
('name', models.CharField(max_length=255, unique=True)),
|
|
505
382
|
('description', models.TextField(blank=True, null=True)),
|
|
383
|
+
('is_active', models.BooleanField(default=True)),
|
|
506
384
|
],
|
|
507
385
|
),
|
|
508
386
|
migrations.CreateModel(
|
|
509
|
-
name='
|
|
387
|
+
name='QualificationType',
|
|
510
388
|
fields=[
|
|
511
389
|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
512
|
-
('name', models.CharField(max_length=
|
|
513
|
-
('
|
|
514
|
-
('
|
|
515
|
-
('max_count', models.IntegerField()),
|
|
516
|
-
('count_distribution_type', models.CharField(choices=[('uniform', 'Uniform'), ('normal', 'Normal')], max_length=20)),
|
|
517
|
-
('count_mean', models.FloatField(blank=True, null=True)),
|
|
518
|
-
('count_std_dev', models.FloatField(blank=True, null=True)),
|
|
390
|
+
('name', models.CharField(max_length=255, unique=True)),
|
|
391
|
+
('description', models.TextField(blank=True, null=True)),
|
|
392
|
+
('is_active', models.BooleanField(default=True)),
|
|
519
393
|
],
|
|
520
|
-
options={
|
|
521
|
-
'abstract': False,
|
|
522
|
-
},
|
|
523
394
|
),
|
|
524
395
|
migrations.CreateModel(
|
|
525
|
-
name='
|
|
396
|
+
name='RawPdfState',
|
|
526
397
|
fields=[
|
|
527
398
|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
528
|
-
('
|
|
529
|
-
('
|
|
530
|
-
('
|
|
531
|
-
('
|
|
532
|
-
('
|
|
533
|
-
('
|
|
399
|
+
('text_meta_extracted', models.BooleanField(default=False, help_text='True if text metadata (OCR) has been extracted.')),
|
|
400
|
+
('initial_prediction_completed', models.BooleanField(default=False, help_text='True if initial AI prediction has run.')),
|
|
401
|
+
('sensitive_meta_processed', models.BooleanField(default=False, help_text='True if the video has been fully processed, meaning a anonymized person was created.')),
|
|
402
|
+
('anonymized', models.BooleanField(default=False, help_text='True if the anonymized video file has been created.')),
|
|
403
|
+
('anonymization_validated', models.BooleanField(default=False, help_text='True if the anonymization process has been validated and confirmed.')),
|
|
404
|
+
('processing_started', models.BooleanField(default=False, help_text='True if the processing has started, but not yet completed.')),
|
|
405
|
+
('processing_error', models.BooleanField(default=False, help_text='True if an error occurred during processing.')),
|
|
406
|
+
('date_created', models.DateTimeField(auto_now_add=True)),
|
|
407
|
+
('date_modified', models.DateTimeField(auto_now=True)),
|
|
408
|
+
('was_created', models.BooleanField(default=True, help_text='True if this state was created for the first time.')),
|
|
409
|
+
('pdf_meta_extracted', models.BooleanField(default=False, help_text='True if PDF metadata has been extracted.')),
|
|
534
410
|
],
|
|
535
411
|
options={
|
|
536
|
-
'
|
|
537
|
-
'
|
|
412
|
+
'verbose_name': 'Raw PDF Processing State',
|
|
413
|
+
'verbose_name_plural': 'Raw PDF Processing States',
|
|
538
414
|
},
|
|
539
415
|
),
|
|
540
416
|
migrations.CreateModel(
|
|
541
|
-
name='
|
|
417
|
+
name='ReportReaderFlag',
|
|
542
418
|
fields=[
|
|
543
419
|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
544
|
-
('name', models.CharField(max_length=255)),
|
|
545
|
-
('
|
|
546
|
-
('created', models.DateTimeField(auto_now_add=True)),
|
|
547
|
-
('updated', models.DateTimeField(auto_now=True)),
|
|
548
|
-
],
|
|
549
|
-
options={
|
|
550
|
-
'db_table': 'network_device_types',
|
|
551
|
-
'ordering': ['name'],
|
|
552
|
-
},
|
|
553
|
-
),
|
|
554
|
-
migrations.CreateModel(
|
|
555
|
-
name='NumericValueDistribution',
|
|
556
|
-
fields=[
|
|
557
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
558
|
-
('name', models.CharField(max_length=100)),
|
|
559
|
-
('distribution_type', models.CharField(choices=[('uniform', 'Uniform'), ('normal', 'Normal'), ('skewed_normal', 'Skewed Normal')], max_length=20)),
|
|
560
|
-
('min_value', models.FloatField()),
|
|
561
|
-
('max_value', models.FloatField()),
|
|
562
|
-
('mean', models.FloatField(blank=True, null=True)),
|
|
563
|
-
('std_dev', models.FloatField(blank=True, null=True)),
|
|
564
|
-
('skewness', models.FloatField(blank=True, null=True)),
|
|
565
|
-
],
|
|
566
|
-
options={
|
|
567
|
-
'abstract': False,
|
|
568
|
-
},
|
|
569
|
-
),
|
|
570
|
-
migrations.CreateModel(
|
|
571
|
-
name='Patient',
|
|
572
|
-
fields=[
|
|
573
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
574
|
-
('first_name', models.CharField(max_length=255)),
|
|
575
|
-
('last_name', models.CharField(max_length=255)),
|
|
576
|
-
('dob', models.DateField(blank=True, null=True, verbose_name='Date of Birth')),
|
|
577
|
-
('email', models.EmailField(blank=True, max_length=255, null=True)),
|
|
578
|
-
('phone', models.CharField(blank=True, max_length=255, null=True)),
|
|
579
|
-
('is_real_person', models.BooleanField(default=True)),
|
|
580
|
-
('center', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.center')),
|
|
581
|
-
('gender', models.ForeignKey(null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.gender')),
|
|
582
|
-
],
|
|
583
|
-
options={
|
|
584
|
-
'abstract': False,
|
|
585
|
-
},
|
|
586
|
-
),
|
|
587
|
-
migrations.CreateModel(
|
|
588
|
-
name='PatientLabSample',
|
|
589
|
-
fields=[
|
|
590
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
591
|
-
('date', models.DateTimeField()),
|
|
592
|
-
('patient', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='lab_samples', to='endoreg_db.patient')),
|
|
593
|
-
],
|
|
594
|
-
),
|
|
595
|
-
migrations.CreateModel(
|
|
596
|
-
name='PatientLabSampleType',
|
|
597
|
-
fields=[
|
|
598
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
599
|
-
('name', models.CharField(max_length=255)),
|
|
600
|
-
('name_de', models.CharField(max_length=255, null=True)),
|
|
601
|
-
('name_en', models.CharField(max_length=255, null=True)),
|
|
602
|
-
('description', models.TextField(blank=True, null=True)),
|
|
603
|
-
],
|
|
604
|
-
),
|
|
605
|
-
migrations.CreateModel(
|
|
606
|
-
name='PatientMedication',
|
|
607
|
-
fields=[
|
|
608
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
609
|
-
('dosage', models.JSONField()),
|
|
610
|
-
('active', models.BooleanField(default=True)),
|
|
611
|
-
('medication_indication', models.ForeignKey(null=True, on_delete=django.db.models.deletion.CASCADE, related_name='patient_medications', to='endoreg_db.medicationindication')),
|
|
612
|
-
('medication_schedules', models.ManyToManyField(to='endoreg_db.medicationschedule')),
|
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613
|
-
('patient', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.patient')),
|
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614
|
-
],
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615
|
-
options={
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616
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-
'verbose_name': 'Patient Medication',
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617
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-
'verbose_name_plural': 'Patient Medications',
|
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618
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},
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619
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-
),
|
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620
|
-
migrations.CreateModel(
|
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621
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-
name='PdfType',
|
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622
|
-
fields=[
|
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623
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
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624
|
-
('name', models.CharField(max_length=255)),
|
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625
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],
|
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626
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-
),
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627
|
-
migrations.CreateModel(
|
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628
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-
name='Product',
|
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629
|
-
fields=[
|
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630
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
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631
|
-
('name', models.CharField(max_length=255)),
|
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632
|
-
('name_de', models.CharField(max_length=255, null=True)),
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633
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-
('name_en', models.CharField(max_length=255, null=True)),
|
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634
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-
],
|
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635
|
-
),
|
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636
|
-
migrations.CreateModel(
|
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637
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-
name='ProductGroup',
|
|
638
|
-
fields=[
|
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639
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
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640
|
-
('name', models.CharField(max_length=255)),
|
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641
|
-
('name_de', models.CharField(max_length=255, null=True)),
|
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642
|
-
('name_en', models.CharField(max_length=255, null=True)),
|
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420
|
+
('name', models.CharField(max_length=255, unique=True)),
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421
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+
('value', models.CharField(max_length=255)),
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643
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|
],
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644
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),
|
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645
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migrations.CreateModel(
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646
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-
name='
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425
|
+
name='RequirementOperator',
|
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647
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|
fields=[
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648
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|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
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649
|
-
('name', models.CharField(max_length=100)),
|
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650
|
-
('name_de', models.CharField(blank=True, max_length=100, null=True)),
|
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651
|
-
('name_en', models.CharField(blank=True, max_length=100, null=True)),
|
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428
|
+
('name', models.CharField(max_length=100, unique=True)),
|
|
652
429
|
('description', models.TextField(blank=True, null=True)),
|
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430
|
+
('evaluation_function_name', models.CharField(blank=True, max_length=255, null=True)),
|
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653
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|
],
|
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654
432
|
),
|
|
655
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|
migrations.CreateModel(
|
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656
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-
name='
|
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434
|
+
name='RequirementSetType',
|
|
657
435
|
fields=[
|
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658
436
|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
659
|
-
('name', models.CharField(max_length=
|
|
437
|
+
('name', models.CharField(max_length=100, unique=True)),
|
|
660
438
|
('description', models.TextField(blank=True, null=True)),
|
|
661
439
|
],
|
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662
440
|
),
|
|
663
441
|
migrations.CreateModel(
|
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664
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-
name='
|
|
442
|
+
name='RequirementType',
|
|
665
443
|
fields=[
|
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666
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|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
667
|
-
('name', models.CharField(max_length=
|
|
445
|
+
('name', models.CharField(max_length=100, unique=True)),
|
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668
446
|
('description', models.TextField(blank=True, null=True)),
|
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669
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|
],
|
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670
448
|
),
|
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671
|
-
migrations.CreateModel(
|
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672
|
-
name='ReportReaderFlag',
|
|
673
|
-
fields=[
|
|
674
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
675
|
-
('name', models.CharField(max_length=255, unique=True)),
|
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676
|
-
('value', models.CharField(max_length=255)),
|
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677
|
-
],
|
|
678
|
-
),
|
|
679
449
|
migrations.CreateModel(
|
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680
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|
name='Resource',
|
|
681
451
|
fields=[
|
|
682
452
|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
683
453
|
('name', models.CharField(max_length=255)),
|
|
684
|
-
('name_de', models.CharField(max_length=255, null=True)),
|
|
685
|
-
('name_en', models.CharField(max_length=255, null=True)),
|
|
686
454
|
],
|
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687
455
|
),
|
|
688
456
|
migrations.CreateModel(
|
|
689
|
-
name='
|
|
457
|
+
name='RiskType',
|
|
690
458
|
fields=[
|
|
691
459
|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
692
|
-
('name', models.CharField(max_length=
|
|
693
|
-
('name_de', models.CharField(blank=True, max_length=255, null=True)),
|
|
694
|
-
('name_en', models.CharField(blank=True, max_length=255, null=True)),
|
|
460
|
+
('name', models.CharField(max_length=100, unique=True)),
|
|
695
461
|
('description', models.TextField(blank=True, null=True)),
|
|
696
|
-
('attribute_key', models.CharField(max_length=255)),
|
|
697
462
|
],
|
|
698
|
-
options={
|
|
699
|
-
'verbose_name': 'Rule',
|
|
700
|
-
'verbose_name_plural': 'Rules',
|
|
701
|
-
},
|
|
702
463
|
),
|
|
703
464
|
migrations.CreateModel(
|
|
704
465
|
name='RuleAttributeDType',
|
|
705
466
|
fields=[
|
|
706
467
|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
707
468
|
('name', models.CharField(max_length=255, unique=True)),
|
|
708
|
-
('name_de', models.CharField(blank=True, max_length=255, null=True)),
|
|
709
|
-
('name_en', models.CharField(blank=True, max_length=255, null=True)),
|
|
710
469
|
],
|
|
711
470
|
),
|
|
712
471
|
migrations.CreateModel(
|
|
@@ -714,8 +473,6 @@ class Migration(migrations.Migration):
|
|
|
714
473
|
fields=[
|
|
715
474
|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
716
475
|
('name', models.CharField(max_length=255, unique=True)),
|
|
717
|
-
('name_de', models.CharField(blank=True, max_length=255, null=True)),
|
|
718
|
-
('name_en', models.CharField(blank=True, max_length=255, null=True)),
|
|
719
476
|
],
|
|
720
477
|
options={
|
|
721
478
|
'verbose_name': 'Rule Type',
|
|
@@ -723,15 +480,24 @@ class Migration(migrations.Migration):
|
|
|
723
480
|
},
|
|
724
481
|
),
|
|
725
482
|
migrations.CreateModel(
|
|
726
|
-
name='
|
|
483
|
+
name='ScheduledDays',
|
|
727
484
|
fields=[
|
|
728
485
|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
729
|
-
('
|
|
730
|
-
('
|
|
731
|
-
('
|
|
732
|
-
('
|
|
733
|
-
('
|
|
734
|
-
('
|
|
486
|
+
('name', models.CharField(help_text='Name of the scheduled days.', max_length=255, unique=True)),
|
|
487
|
+
('working_days', models.BooleanField(blank=True, default=True, null=True)),
|
|
488
|
+
('non_working_days', models.BooleanField(blank=True, default=False, null=True)),
|
|
489
|
+
('limited_time', models.BooleanField(blank=True, default=False, null=True)),
|
|
490
|
+
('start_date', models.DateField(blank=True, null=True)),
|
|
491
|
+
('end_date', models.DateField(blank=True, null=True)),
|
|
492
|
+
],
|
|
493
|
+
),
|
|
494
|
+
migrations.CreateModel(
|
|
495
|
+
name='ShiftType',
|
|
496
|
+
fields=[
|
|
497
|
+
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
498
|
+
('name', models.CharField(max_length=255, unique=True)),
|
|
499
|
+
('description', models.TextField(blank=True, null=True)),
|
|
500
|
+
('is_active', models.BooleanField(default=True)),
|
|
735
501
|
],
|
|
736
502
|
),
|
|
737
503
|
migrations.CreateModel(
|
|
@@ -746,85 +512,30 @@ class Migration(migrations.Migration):
|
|
|
746
512
|
},
|
|
747
513
|
),
|
|
748
514
|
migrations.CreateModel(
|
|
749
|
-
name='
|
|
750
|
-
fields=[
|
|
751
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
752
|
-
('
|
|
753
|
-
('birth_date', models.DateField(verbose_name='Geburtsdatum')),
|
|
754
|
-
('emergency_patient', models.CharField(choices=[('yes', 'Ja'), ('no', 'Nein')], max_length=3, verbose_name='Notfallpatient/kürzlich untersuchter Patient (Verzicht auf Team-Time-Out möglich)')),
|
|
755
|
-
('consent_signed', models.CharField(choices=[('yes', 'Ja'), ('no', 'Nein')], max_length=3, verbose_name='Einverständniserklärung unterschrieben (Arzt, Patient)')),
|
|
756
|
-
('documents_present', models.CharField(choices=[('yes', 'Ja'), ('no', 'Nein')], max_length=3, verbose_name='Alle Dokumente liegen vor (Labor, Befunde, etc.)')),
|
|
757
|
-
('communication_possible', models.CharField(choices=[('yes', 'Ja'), ('no', 'Nein')], max_length=3, verbose_name='Kommunikation mit Patient möglich')),
|
|
758
|
-
('work_incapacity_certificate', models.CharField(choices=[('yes', 'Ja'), ('no', 'Nein')], max_length=3, verbose_name='Arbeitsunfähigkeitsbescheinigung')),
|
|
759
|
-
('pregnancy', models.CharField(choices=[('yes', 'Ja'), ('no', 'Nein')], max_length=3, verbose_name='Schwangerschaft')),
|
|
760
|
-
('asa_classification_checked', models.CharField(choices=[('yes', 'Ja'), ('no', 'Nein')], max_length=3, verbose_name='ASA-Klassifikation/Komorbidität geprüft')),
|
|
761
|
-
('previous_anesthesia_complications', models.CharField(choices=[('yes', 'Ja'), ('no', 'Nein')], max_length=3, verbose_name='Komplikationen bei bisherigen Narkosen?')),
|
|
762
|
-
('last_meal_over_6_hours_ago', models.CharField(choices=[('yes', 'Ja'), ('no', 'Nein')], max_length=3, verbose_name='Zeitpunkt letzte Mahlzeit > 6 Stunden')),
|
|
763
|
-
('allergies', models.CharField(choices=[('yes', 'Ja'), ('no', 'Nein')], max_length=3, verbose_name='Allergien, welche?')),
|
|
764
|
-
('outpatient_accompaniment_post_sedation', models.CharField(choices=[('yes', 'Ja'), ('no', 'Nein')], max_length=3, verbose_name='Nur bei ambulanter Vorstellung: Begleitung nach Sedierung?')),
|
|
765
|
-
('dental_prosthesis', models.BooleanField(default=False, verbose_name='Zahnprothese')),
|
|
766
|
-
('glasses', models.BooleanField(default=False, verbose_name='Brille')),
|
|
767
|
-
('implants', models.BooleanField(default=False, verbose_name='Implantate')),
|
|
768
|
-
('hearing_aids', models.BooleanField(default=False, verbose_name='Hörgeräte')),
|
|
769
|
-
('anticoagulants_ass', models.CharField(choices=[('yes', 'Ja'), ('no', 'Nein')], max_length=3, verbose_name='Antikoagulation, ASS')),
|
|
770
|
-
('blood_pressure_medication', models.CharField(choices=[('yes', 'Ja'), ('no', 'Nein')], max_length=3, verbose_name='Blutdruckmedikamente')),
|
|
771
|
-
('glaucoma', models.CharField(choices=[('yes', 'Ja'), ('no', 'Nein')], max_length=3, verbose_name='Glaukom')),
|
|
772
|
-
('metal_implants', models.CharField(choices=[('yes', 'Ja'), ('no', 'Nein')], max_length=3, verbose_name='Metallimplantate')),
|
|
773
|
-
('pacemaker_icd', models.CharField(choices=[('yes', 'Ja'), ('no', 'Nein')], max_length=3, verbose_name='Herzschrittmacher/ICD')),
|
|
774
|
-
('copd', models.CharField(choices=[('yes', 'Ja'), ('no', 'Nein')], max_length=3, verbose_name='COPD')),
|
|
775
|
-
('liver_cirrhosis', models.CharField(choices=[('yes', 'Ja'), ('no', 'Nein')], max_length=3, verbose_name='Leberzirrhose')),
|
|
776
|
-
('ibd', models.CharField(choices=[('yes', 'Ja'), ('no', 'Nein')], max_length=3, verbose_name='CED (Chronisch entzündliche Darmerkrankungen)')),
|
|
777
|
-
('radiation', models.CharField(choices=[('yes', 'Ja'), ('no', 'Nein')], max_length=3, verbose_name='Bestrahlung')),
|
|
778
|
-
('surgeries', models.CharField(choices=[('yes', 'Ja'), ('no', 'Nein')], max_length=3, verbose_name='OP´s')),
|
|
779
|
-
('team_introduction', models.CharField(choices=[('yes', 'Ja'), ('no', 'Nein')], max_length=3, verbose_name='Teamvorstellung mit Name und Aufgabe')),
|
|
780
|
-
('instruments_available', models.CharField(choices=[('yes', 'Ja'), ('no', 'Nein')], max_length=3, verbose_name='Notwendige Instrumente vorhanden?')),
|
|
781
|
-
('monitoring_medications_equipment_checked', models.CharField(choices=[('yes', 'Ja'), ('no', 'Nein')], max_length=3, verbose_name='Monitoring, Medikamente, Equipment zum Atemwegsmanagement zur Verfügung und überprüft?')),
|
|
782
|
-
('complete_documentation_inclusive_care_notes', models.TextField(verbose_name='Vollständige Dokumentation inklusive Hinweise für Nachsorge')),
|
|
783
|
-
('notes', models.TextField(default='Keine Bemerkungen', verbose_name='Bemerkungen')),
|
|
784
|
-
('specimens_secured', models.BooleanField(default=False, verbose_name='Histologische Proben gesichert')),
|
|
785
|
-
('patient_condition_documented', models.TextField(verbose_name='Patientenzustand dokumentiert (je nach Ausgangszustand)')),
|
|
515
|
+
name='Tag',
|
|
516
|
+
fields=[
|
|
517
|
+
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
518
|
+
('name', models.CharField(max_length=100, unique=True)),
|
|
786
519
|
],
|
|
520
|
+
options={
|
|
521
|
+
'verbose_name': 'Tag',
|
|
522
|
+
'verbose_name_plural': 'Tags',
|
|
523
|
+
},
|
|
787
524
|
),
|
|
788
525
|
migrations.CreateModel(
|
|
789
526
|
name='Unit',
|
|
790
527
|
fields=[
|
|
791
528
|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
792
529
|
('name', models.CharField(max_length=100)),
|
|
793
|
-
('name_de', models.CharField(blank=True, max_length=100, null=True)),
|
|
794
|
-
('name_en', models.CharField(blank=True, max_length=100, null=True)),
|
|
795
530
|
('description', models.CharField(blank=True, max_length=100, null=True)),
|
|
796
531
|
('abbreviation', models.CharField(blank=True, max_length=25, null=True)),
|
|
797
532
|
],
|
|
798
533
|
),
|
|
799
|
-
migrations.CreateModel(
|
|
800
|
-
name='Video',
|
|
801
|
-
fields=[
|
|
802
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
803
|
-
('file', models.FileField(blank=True, null=True, upload_to='raw_videos')),
|
|
804
|
-
('video_hash', models.CharField(max_length=255, unique=True)),
|
|
805
|
-
('date', models.DateField(blank=True, null=True)),
|
|
806
|
-
('suffix', models.CharField(max_length=255)),
|
|
807
|
-
('fps', models.FloatField()),
|
|
808
|
-
('duration', models.FloatField()),
|
|
809
|
-
('width', models.IntegerField()),
|
|
810
|
-
('height', models.IntegerField()),
|
|
811
|
-
('endoscope_image_x', models.IntegerField(blank=True, null=True)),
|
|
812
|
-
('endoscope_image_y', models.IntegerField(blank=True, null=True)),
|
|
813
|
-
('endoscope_image_width', models.IntegerField(blank=True, null=True)),
|
|
814
|
-
('endoscope_image_height', models.IntegerField(blank=True, null=True)),
|
|
815
|
-
('frames_extracted', models.BooleanField(default=False)),
|
|
816
|
-
('meta', models.JSONField(blank=True, null=True)),
|
|
817
|
-
('center', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.center')),
|
|
818
|
-
('endoscopy_processor', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.endoscopyprocessor')),
|
|
819
|
-
],
|
|
820
|
-
options={
|
|
821
|
-
'abstract': False,
|
|
822
|
-
},
|
|
823
|
-
),
|
|
824
534
|
migrations.CreateModel(
|
|
825
535
|
name='VideoImportMeta',
|
|
826
536
|
fields=[
|
|
827
537
|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
538
|
+
('file_name', models.CharField(blank=True, max_length=255, null=True)),
|
|
828
539
|
('video_anonymized', models.BooleanField(default=False)),
|
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829
540
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('video_patient_data_detected', models.BooleanField(default=False)),
|
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830
541
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('outside_detected', models.BooleanField(default=False)),
|
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@@ -833,735 +544,1314 @@ class Migration(migrations.Migration):
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833
544
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],
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834
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),
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835
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migrations.CreateModel(
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836
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-
name='
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547
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+
name='VideoSegmentationLabel',
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837
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fields=[
|
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838
549
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('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
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839
550
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('name', models.CharField(max_length=255)),
|
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840
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-
('
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841
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-
('
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551
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+
('description', models.TextField(blank=True, null=True)),
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552
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+
('color', models.CharField(blank=True, max_length=255, null=True)),
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553
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+
('order_priority', models.IntegerField(default=0)),
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842
554
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],
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843
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),
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844
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migrations.CreateModel(
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845
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-
name='
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557
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+
name='VideoState',
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846
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fields=[
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847
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('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
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560
|
+
('frames_extracted', models.BooleanField(default=False, help_text='True if raw frames have been extracted to files.')),
|
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561
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+
('frames_initialized', models.BooleanField(default=False, help_text='True if Frame DB objects have been created.')),
|
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562
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+
('frame_count', models.PositiveIntegerField(blank=True, help_text='Number of frames extracted/initialized.', null=True)),
|
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563
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+
('video_meta_extracted', models.BooleanField(default=False, help_text='True if VideoMeta (technical specs) has been extracted.')),
|
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564
|
+
('text_meta_extracted', models.BooleanField(default=False, help_text='True if text metadata (OCR) has been extracted.')),
|
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565
|
+
('initial_prediction_completed', models.BooleanField(default=False, help_text='True if initial AI prediction has run.')),
|
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566
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+
('lvs_created', models.BooleanField(default=False, help_text='True if LabelVideoSegments have been created from predictions.')),
|
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567
|
+
('frame_annotations_generated', models.BooleanField(default=False, help_text='True if frame-level annotations have been generated from segments.')),
|
|
568
|
+
('sensitive_meta_processed', models.BooleanField(default=False, help_text='True if the video has been fully processed, meaning a anonymized person was created.')),
|
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569
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+
('anonymized', models.BooleanField(default=False, help_text='True if the anonymized video file has been created.')),
|
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570
|
+
('anonymization_validated', models.BooleanField(default=False, help_text='True if the anonymization process has been validated and confirmed.')),
|
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571
|
+
('processing_started', models.BooleanField(default=False, help_text='True if the processing has started, but not yet completed.')),
|
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848
572
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('date_created', models.DateTimeField(auto_now_add=True)),
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849
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('date_modified', models.DateTimeField(auto_now=True)),
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850
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-
('
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851
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-
('
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852
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-
('
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574
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+
('segment_annotations_created', models.BooleanField(default=False, help_text='True if segment annotations have been created from LabelVideoSegments.')),
|
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575
|
+
('segment_annotations_validated', models.BooleanField(default=False, help_text='True if segment annotations have been validated.')),
|
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576
|
+
('was_created', models.BooleanField(default=True, help_text='True if this state was created for the first time.')),
|
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853
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],
|
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854
578
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options={
|
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855
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-
'
|
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856
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-
'
|
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579
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+
'verbose_name': 'Video Processing State',
|
|
580
|
+
'verbose_name_plural': 'Video Processing States',
|
|
857
581
|
},
|
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858
582
|
),
|
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859
583
|
migrations.CreateModel(
|
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860
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-
name='
|
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584
|
+
name='Waste',
|
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861
585
|
fields=[
|
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862
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|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
863
|
-
('
|
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864
|
-
('endoscope', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.endoscope')),
|
|
865
|
-
('ffmpeg_meta', models.OneToOneField(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.ffmpegmeta')),
|
|
866
|
-
('import_meta', models.OneToOneField(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.videoimportmeta')),
|
|
867
|
-
('processor', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.endoscopyprocessor')),
|
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587
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+
('name', models.CharField(max_length=255)),
|
|
868
588
|
],
|
|
869
589
|
),
|
|
870
|
-
migrations.AddField(
|
|
871
|
-
model_name='video',
|
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872
|
-
name='import_meta',
|
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873
|
-
field=models.OneToOneField(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.videoimportmeta'),
|
|
874
|
-
),
|
|
875
|
-
migrations.AddField(
|
|
876
|
-
model_name='video',
|
|
877
|
-
name='patient',
|
|
878
|
-
field=models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.patient'),
|
|
879
|
-
),
|
|
880
590
|
migrations.CreateModel(
|
|
881
|
-
name='
|
|
591
|
+
name='CaseTemplateRule',
|
|
882
592
|
fields=[
|
|
883
593
|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
884
|
-
('distance', models.FloatField()),
|
|
885
594
|
('name', models.CharField(max_length=255)),
|
|
886
|
-
('
|
|
887
|
-
('
|
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888
|
-
('
|
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889
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-
('
|
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595
|
+
('description', models.TextField(blank=True, null=True)),
|
|
596
|
+
('parent_model', models.CharField(blank=True, max_length=255, null=True)),
|
|
597
|
+
('parent_field', models.CharField(blank=True, max_length=255, null=True)),
|
|
598
|
+
('target_field', models.CharField(blank=True, max_length=255, null=True)),
|
|
599
|
+
('target_model', models.CharField(blank=True, max_length=255, null=True)),
|
|
600
|
+
('rule_values', models.JSONField(blank=True, null=True)),
|
|
601
|
+
('extra_parameters', models.JSONField(blank=True, null=True)),
|
|
602
|
+
('chained_rules', models.ManyToManyField(related_name='calling_rules', to='endoreg_db.casetemplaterule')),
|
|
603
|
+
('rule_type', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.casetemplateruletype')),
|
|
604
|
+
('value_type', models.ForeignKey(null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.casetemplaterulevaluetype')),
|
|
605
|
+
('date_value_distribution', models.ForeignKey(null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.datevaluedistribution')),
|
|
606
|
+
('multiple_categorical_value_distribution', models.ForeignKey(null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.multiplecategoricalvaluedistribution')),
|
|
607
|
+
('numerical_value_distribution', models.ForeignKey(null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.numericvaluedistribution')),
|
|
608
|
+
('single_categorical_value_distribution', models.ForeignKey(null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.singlecategoricalvaluedistribution')),
|
|
890
609
|
],
|
|
891
610
|
),
|
|
892
611
|
migrations.CreateModel(
|
|
893
|
-
name='
|
|
612
|
+
name='CaseTemplate',
|
|
894
613
|
fields=[
|
|
895
614
|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
896
615
|
('name', models.CharField(max_length=255, unique=True)),
|
|
897
|
-
('
|
|
898
|
-
('
|
|
899
|
-
('
|
|
616
|
+
('description', models.TextField(blank=True, null=True)),
|
|
617
|
+
('rules', models.ManyToManyField(to='endoreg_db.casetemplaterule')),
|
|
618
|
+
('secondary_rules', models.ManyToManyField(related_name='secondary_rules', to='endoreg_db.casetemplaterule')),
|
|
619
|
+
('template_type', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='case_templates', to='endoreg_db.casetemplatetype')),
|
|
900
620
|
],
|
|
901
621
|
),
|
|
902
|
-
migrations.AddField(
|
|
903
|
-
model_name='rule',
|
|
904
|
-
name='attribute_dtype',
|
|
905
|
-
field=models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.ruleattributedtype'),
|
|
906
|
-
),
|
|
907
|
-
migrations.AddField(
|
|
908
|
-
model_name='rule',
|
|
909
|
-
name='rule_type',
|
|
910
|
-
field=models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.ruletype'),
|
|
911
|
-
),
|
|
912
622
|
migrations.CreateModel(
|
|
913
|
-
name='
|
|
623
|
+
name='DiseaseClassification',
|
|
914
624
|
fields=[
|
|
915
625
|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
916
|
-
('
|
|
917
|
-
('
|
|
918
|
-
('cut_off_above', models.ManyToManyField(related_name='report_reader_configs_cut_off_above', to='endoreg_db.reportreaderflag')),
|
|
919
|
-
('cut_off_below', models.ManyToManyField(related_name='report_reader_configs_cut_off_below', to='endoreg_db.reportreaderflag')),
|
|
920
|
-
('endoscope_info_line_flag', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='report_reader_configs_endoscope_info_line', to='endoreg_db.reportreaderflag')),
|
|
921
|
-
('examiner_info_line_flag', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='report_reader_configs_examiner_info_line', to='endoreg_db.reportreaderflag')),
|
|
922
|
-
('first_names', models.ManyToManyField(related_name='report_reader_configs', to='endoreg_db.firstname')),
|
|
923
|
-
('last_names', models.ManyToManyField(related_name='report_reader_configs', to='endoreg_db.lastname')),
|
|
924
|
-
('patient_info_line_flag', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='report_reader_configs_patient_info_line', to='endoreg_db.reportreaderflag')),
|
|
626
|
+
('name', models.CharField(max_length=255, unique=True)),
|
|
627
|
+
('disease', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='disease_classifications', to='endoreg_db.disease')),
|
|
925
628
|
],
|
|
926
629
|
),
|
|
927
630
|
migrations.CreateModel(
|
|
928
|
-
name='
|
|
631
|
+
name='DiseaseClassificationChoice',
|
|
929
632
|
fields=[
|
|
930
633
|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
931
|
-
('
|
|
932
|
-
('
|
|
933
|
-
('meta', models.JSONField(blank=True, null=True)),
|
|
934
|
-
('text', models.TextField(blank=True, null=True)),
|
|
935
|
-
('text_anonymized', models.TextField(blank=True, null=True)),
|
|
936
|
-
('date', models.DateField(blank=True, null=True)),
|
|
937
|
-
('time', models.TimeField(blank=True, null=True)),
|
|
938
|
-
('center', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.center')),
|
|
939
|
-
('examiner', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.examiner')),
|
|
940
|
-
('patient', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.patient')),
|
|
634
|
+
('name', models.CharField(max_length=255, unique=True)),
|
|
635
|
+
('disease_classification', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='disease_classification_choices', to='endoreg_db.diseaseclassification')),
|
|
941
636
|
],
|
|
942
637
|
),
|
|
943
638
|
migrations.CreateModel(
|
|
944
|
-
name='
|
|
639
|
+
name='Endoscope',
|
|
945
640
|
fields=[
|
|
946
641
|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
947
642
|
('name', models.CharField(max_length=255)),
|
|
948
|
-
('
|
|
949
|
-
('
|
|
950
|
-
('
|
|
951
|
-
('product', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.product')),
|
|
952
|
-
('product_group', models.OneToOneField(on_delete=django.db.models.deletion.CASCADE, related_name='reference_product', to='endoreg_db.productgroup')),
|
|
953
|
-
],
|
|
954
|
-
),
|
|
955
|
-
migrations.CreateModel(
|
|
956
|
-
name='RawVideoFile',
|
|
957
|
-
fields=[
|
|
958
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
959
|
-
('uuid', models.UUIDField()),
|
|
960
|
-
('file', models.FileField(upload_to='raw_data/')),
|
|
961
|
-
('original_file_name', models.CharField(max_length=255)),
|
|
962
|
-
('video_hash', models.CharField(max_length=255, unique=True)),
|
|
963
|
-
('uploaded_at', models.DateTimeField(auto_now_add=True)),
|
|
964
|
-
('state_frames_required', models.BooleanField(default=True)),
|
|
965
|
-
('state_frames_extracted', models.BooleanField(default=False)),
|
|
966
|
-
('state_initial_prediction_required', models.BooleanField(default=True)),
|
|
967
|
-
('state_initial_prediction_completed', models.BooleanField(default=False)),
|
|
968
|
-
('state_initial_prediction_import_required', models.BooleanField(default=True)),
|
|
969
|
-
('state_initial_prediction_import_completed', models.BooleanField(default=False)),
|
|
970
|
-
('state_ocr_required', models.BooleanField(default=True)),
|
|
971
|
-
('state_ocr_completed', models.BooleanField(default=False)),
|
|
972
|
-
('state_outside_validated', models.BooleanField(default=False)),
|
|
973
|
-
('state_ocr_result_validated', models.BooleanField(default=False)),
|
|
974
|
-
('state_sensitive_data_retrieved', models.BooleanField(default=False)),
|
|
975
|
-
('state_histology_required', models.BooleanField(blank=True, null=True)),
|
|
976
|
-
('state_histology_available', models.BooleanField(default=False)),
|
|
977
|
-
('state_follow_up_intervention_required', models.BooleanField(blank=True, null=True)),
|
|
978
|
-
('state_follow_up_intervention_available', models.BooleanField(default=False)),
|
|
979
|
-
('state_dataset_complete', models.BooleanField(default=False)),
|
|
980
|
-
('state_anonym_video_required', models.BooleanField(default=True)),
|
|
981
|
-
('state_anonym_video_performed', models.BooleanField(default=False)),
|
|
982
|
-
('state_original_reports_deleted', models.BooleanField(default=False)),
|
|
983
|
-
('state_original_video_deleted', models.BooleanField(default=False)),
|
|
984
|
-
('state_finalized', models.BooleanField(default=False)),
|
|
985
|
-
('frame_dir', models.CharField(max_length=255)),
|
|
986
|
-
('prediction_dir', models.CharField(max_length=255)),
|
|
987
|
-
('center', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.center')),
|
|
988
|
-
('processor', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.endoscopyprocessor')),
|
|
989
|
-
('sensitive_meta', models.OneToOneField(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.sensitivemeta')),
|
|
990
|
-
('video_meta', models.OneToOneField(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.videometa')),
|
|
991
|
-
],
|
|
992
|
-
),
|
|
993
|
-
migrations.CreateModel(
|
|
994
|
-
name='RawPdfFile',
|
|
995
|
-
fields=[
|
|
996
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
997
|
-
('file', models.FileField(storage=django.core.files.storage.FileSystemStorage(location='/home/agl-admin/agl-monitor/agl_monitor/agl_monitor/erc_data/raw_pdf'), upload_to='raw_pdf/', validators=[django.core.validators.FileExtensionValidator(allowed_extensions=['pdf'])])),
|
|
998
|
-
('pdf_hash', models.CharField(max_length=255, unique=True)),
|
|
999
|
-
('state_report_processing_required', models.BooleanField(default=True)),
|
|
1000
|
-
('state_report_processed', models.BooleanField(default=False)),
|
|
1001
|
-
('text', models.TextField(blank=True, null=True)),
|
|
1002
|
-
('anonymized_text', models.TextField(blank=True, null=True)),
|
|
1003
|
-
('raw_meta', models.JSONField(blank=True, null=True)),
|
|
1004
|
-
('created_at', models.DateTimeField(auto_now_add=True)),
|
|
1005
|
-
('center', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.center')),
|
|
1006
|
-
('pdf_type', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.pdftype')),
|
|
1007
|
-
('sensitive_meta', models.OneToOneField(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='raw_pdf_file', to='endoreg_db.sensitivemeta')),
|
|
1008
|
-
],
|
|
1009
|
-
),
|
|
1010
|
-
migrations.CreateModel(
|
|
1011
|
-
name='QuizQuestion',
|
|
1012
|
-
fields=[
|
|
1013
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1014
|
-
('text', models.TextField()),
|
|
1015
|
-
('description', models.TextField(blank=True, null=True)),
|
|
1016
|
-
('question_type', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.quizquestiontype')),
|
|
643
|
+
('sn', models.CharField(max_length=255)),
|
|
644
|
+
('center', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='endoscopes', to='endoreg_db.center')),
|
|
645
|
+
('endoscope_type', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='endoscopes', to='endoreg_db.endoscopetype')),
|
|
1017
646
|
],
|
|
647
|
+
options={
|
|
648
|
+
'verbose_name': 'Endoscope',
|
|
649
|
+
'verbose_name_plural': 'Endoscopes',
|
|
650
|
+
'ordering': ['name'],
|
|
651
|
+
},
|
|
1018
652
|
),
|
|
1019
653
|
migrations.CreateModel(
|
|
1020
|
-
name='
|
|
654
|
+
name='EndoscopyProcessor',
|
|
1021
655
|
fields=[
|
|
1022
656
|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1023
|
-
('
|
|
1024
|
-
('
|
|
1025
|
-
('
|
|
1026
|
-
('
|
|
1027
|
-
('
|
|
1028
|
-
|
|
1029
|
-
|
|
1030
|
-
|
|
1031
|
-
|
|
657
|
+
('name', models.CharField(max_length=255)),
|
|
658
|
+
('image_width', models.IntegerField()),
|
|
659
|
+
('image_height', models.IntegerField()),
|
|
660
|
+
('endoscope_image_x', models.IntegerField()),
|
|
661
|
+
('endoscope_image_y', models.IntegerField()),
|
|
662
|
+
('endoscope_image_width', models.IntegerField()),
|
|
663
|
+
('endoscope_image_height', models.IntegerField()),
|
|
664
|
+
('examination_date_x', models.IntegerField()),
|
|
665
|
+
('examination_date_y', models.IntegerField()),
|
|
666
|
+
('examination_date_width', models.IntegerField()),
|
|
667
|
+
('examination_date_height', models.IntegerField()),
|
|
668
|
+
('examination_time_x', models.IntegerField(blank=True, null=True)),
|
|
669
|
+
('examination_time_y', models.IntegerField(blank=True, null=True)),
|
|
670
|
+
('examination_time_width', models.IntegerField(blank=True, null=True)),
|
|
671
|
+
('examination_time_height', models.IntegerField(blank=True, null=True)),
|
|
672
|
+
('patient_first_name_x', models.IntegerField()),
|
|
673
|
+
('patient_first_name_y', models.IntegerField()),
|
|
674
|
+
('patient_first_name_width', models.IntegerField()),
|
|
675
|
+
('patient_first_name_height', models.IntegerField()),
|
|
676
|
+
('patient_last_name_x', models.IntegerField()),
|
|
677
|
+
('patient_last_name_y', models.IntegerField()),
|
|
678
|
+
('patient_last_name_width', models.IntegerField()),
|
|
679
|
+
('patient_last_name_height', models.IntegerField()),
|
|
680
|
+
('patient_dob_x', models.IntegerField()),
|
|
681
|
+
('patient_dob_y', models.IntegerField()),
|
|
682
|
+
('patient_dob_width', models.IntegerField()),
|
|
683
|
+
('patient_dob_height', models.IntegerField()),
|
|
684
|
+
('endoscope_type_x', models.IntegerField(blank=True, null=True)),
|
|
685
|
+
('endoscope_type_y', models.IntegerField(blank=True, null=True)),
|
|
686
|
+
('endoscope_type_width', models.IntegerField(blank=True, null=True)),
|
|
687
|
+
('endoscope_type_height', models.IntegerField(blank=True, null=True)),
|
|
688
|
+
('endoscope_sn_x', models.IntegerField(blank=True, null=True)),
|
|
689
|
+
('endoscope_sn_y', models.IntegerField(blank=True, null=True)),
|
|
690
|
+
('endoscope_sn_width', models.IntegerField(blank=True, null=True)),
|
|
691
|
+
('endoscope_sn_height', models.IntegerField(blank=True, null=True)),
|
|
692
|
+
('centers', models.ManyToManyField(blank=True, related_name='endoscopy_processors', to='endoreg_db.center')),
|
|
693
|
+
],
|
|
694
|
+
),
|
|
695
|
+
migrations.CreateModel(
|
|
696
|
+
name='Event',
|
|
697
|
+
fields=[
|
|
698
|
+
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
699
|
+
('name', models.CharField(max_length=100, unique=True)),
|
|
700
|
+
('description', models.TextField(blank=True, null=True)),
|
|
701
|
+
('event_classification', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='events', to='endoreg_db.eventclassification')),
|
|
702
|
+
],
|
|
703
|
+
),
|
|
704
|
+
migrations.CreateModel(
|
|
705
|
+
name='EventClassificationChoice',
|
|
706
|
+
fields=[
|
|
707
|
+
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
708
|
+
('name', models.CharField(max_length=255, unique=True)),
|
|
709
|
+
('subcategories', models.JSONField(default=dict)),
|
|
710
|
+
('numerical_descriptors', models.JSONField(default=dict)),
|
|
711
|
+
('event_classification', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='event_classification_choices', to='endoreg_db.eventclassification')),
|
|
712
|
+
],
|
|
713
|
+
),
|
|
714
|
+
migrations.CreateModel(
|
|
715
|
+
name='ExaminationIndicationClassification',
|
|
716
|
+
fields=[
|
|
717
|
+
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
718
|
+
('name', models.CharField(max_length=255, unique=True)),
|
|
719
|
+
('description', models.TextField(blank=True, null=True)),
|
|
720
|
+
('examinations', models.ManyToManyField(blank=True, related_name='indication_classifications', to='endoreg_db.examination')),
|
|
721
|
+
],
|
|
722
|
+
),
|
|
723
|
+
migrations.CreateModel(
|
|
724
|
+
name='ExaminationIndicationClassificationChoice',
|
|
725
|
+
fields=[
|
|
726
|
+
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
727
|
+
('name', models.CharField(max_length=255, unique=True)),
|
|
728
|
+
('subcategories', models.JSONField(default=dict)),
|
|
729
|
+
('numerical_descriptors', models.JSONField(default=dict)),
|
|
730
|
+
('classification', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='choices', to='endoreg_db.examinationindicationclassification')),
|
|
731
|
+
],
|
|
732
|
+
),
|
|
733
|
+
migrations.CreateModel(
|
|
734
|
+
name='ExaminationRequirementSet',
|
|
735
|
+
fields=[
|
|
736
|
+
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
737
|
+
('enabled_by_default', models.BooleanField(default=False)),
|
|
738
|
+
('name', models.CharField(max_length=100, unique=True)),
|
|
739
|
+
('examinations', models.ManyToManyField(blank=True, related_name='exam_reqset_links', to='endoreg_db.examination')),
|
|
740
|
+
],
|
|
741
|
+
),
|
|
742
|
+
migrations.CreateModel(
|
|
743
|
+
name='ExaminationTimeType',
|
|
744
|
+
fields=[
|
|
745
|
+
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
746
|
+
('name', models.CharField(max_length=100, unique=True)),
|
|
747
|
+
('examinations', models.ManyToManyField(blank=True, to='endoreg_db.examination')),
|
|
748
|
+
],
|
|
749
|
+
options={
|
|
750
|
+
'verbose_name': 'Examination Time Type',
|
|
751
|
+
'verbose_name_plural': 'Examination Time Types',
|
|
752
|
+
'ordering': ['name'],
|
|
753
|
+
},
|
|
754
|
+
),
|
|
755
|
+
migrations.CreateModel(
|
|
756
|
+
name='ExaminationTime',
|
|
757
|
+
fields=[
|
|
758
|
+
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
759
|
+
('name', models.CharField(max_length=100, unique=True)),
|
|
760
|
+
('start_time', models.TimeField(blank=True, null=True)),
|
|
761
|
+
('end_time', models.TimeField(blank=True, null=True)),
|
|
762
|
+
('time_types', models.ManyToManyField(blank=True, to='endoreg_db.examinationtimetype')),
|
|
763
|
+
],
|
|
764
|
+
options={
|
|
765
|
+
'verbose_name': 'Examination Time',
|
|
766
|
+
'verbose_name_plural': 'Examination Times',
|
|
767
|
+
'ordering': ['name'],
|
|
768
|
+
},
|
|
769
|
+
),
|
|
770
|
+
migrations.AddField(
|
|
771
|
+
model_name='examination',
|
|
772
|
+
name='examination_types',
|
|
773
|
+
field=models.ManyToManyField(blank=True, to='endoreg_db.examinationtype'),
|
|
774
|
+
),
|
|
775
|
+
migrations.CreateModel(
|
|
776
|
+
name='Examiner',
|
|
777
|
+
fields=[
|
|
778
|
+
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
779
|
+
('first_name', models.CharField(max_length=255)),
|
|
780
|
+
('last_name', models.CharField(max_length=255)),
|
|
781
|
+
('dob', models.DateField(blank=True, null=True, verbose_name='Date of Birth')),
|
|
782
|
+
('email', models.EmailField(blank=True, max_length=255, null=True)),
|
|
783
|
+
('phone', models.CharField(blank=True, max_length=255, null=True)),
|
|
784
|
+
('is_real_person', models.BooleanField(default=True)),
|
|
785
|
+
('hash', models.CharField(max_length=255, unique=True)),
|
|
786
|
+
('center', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.center')),
|
|
787
|
+
('gender', models.ForeignKey(null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.gender')),
|
|
788
|
+
],
|
|
789
|
+
options={
|
|
790
|
+
'abstract': False,
|
|
791
|
+
},
|
|
792
|
+
),
|
|
793
|
+
migrations.CreateModel(
|
|
794
|
+
name='FindingIntervention',
|
|
795
|
+
fields=[
|
|
796
|
+
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
797
|
+
('name', models.CharField(max_length=100, unique=True)),
|
|
798
|
+
('name_de', models.CharField(max_length=100, null=True, unique=True)),
|
|
799
|
+
('name_en', models.CharField(max_length=100, null=True, unique=True)),
|
|
800
|
+
('description', models.TextField(blank=True, null=True)),
|
|
801
|
+
('description_de', models.TextField(blank=True, null=True)),
|
|
802
|
+
('description_en', models.TextField(blank=True, null=True)),
|
|
803
|
+
('contraindications', models.ManyToManyField(blank=True, related_name='contraindicating_finding_interventions', to='endoreg_db.contraindication')),
|
|
804
|
+
('intervention_types', models.ManyToManyField(blank=True, related_name='interventions', to='endoreg_db.findinginterventiontype')),
|
|
805
|
+
],
|
|
806
|
+
),
|
|
807
|
+
migrations.CreateModel(
|
|
808
|
+
name='Finding',
|
|
809
|
+
fields=[
|
|
810
|
+
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
811
|
+
('name', models.CharField(max_length=100, unique=True)),
|
|
812
|
+
('name_de', models.CharField(max_length=100, null=True, unique=True)),
|
|
813
|
+
('name_en', models.CharField(max_length=100, null=True, unique=True)),
|
|
814
|
+
('description', models.TextField(blank=True, null=True)),
|
|
815
|
+
('description_de', models.TextField(blank=True, null=True)),
|
|
816
|
+
('description_en', models.TextField(blank=True, null=True)),
|
|
817
|
+
('examinations', models.ManyToManyField(blank=True, related_name='findings', to='endoreg_db.examination')),
|
|
818
|
+
('finding_interventions', models.ManyToManyField(blank=True, related_name='findings', to='endoreg_db.findingintervention')),
|
|
819
|
+
('finding_types', models.ManyToManyField(blank=True, related_name='findings', to='endoreg_db.findingtype')),
|
|
820
|
+
],
|
|
821
|
+
),
|
|
822
|
+
migrations.CreateModel(
|
|
823
|
+
name='ExaminationIndication',
|
|
824
|
+
fields=[
|
|
825
|
+
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
826
|
+
('name', models.CharField(max_length=255, unique=True)),
|
|
827
|
+
('description', models.TextField(blank=True, null=True)),
|
|
828
|
+
('examinations', models.ManyToManyField(blank=True, related_name='indications', to='endoreg_db.examination')),
|
|
829
|
+
('classifications', models.ManyToManyField(blank=True, related_name='indications', to='endoreg_db.examinationindicationclassification')),
|
|
830
|
+
('expected_interventions', models.ManyToManyField(blank=True, related_name='indications', to='endoreg_db.findingintervention')),
|
|
831
|
+
],
|
|
832
|
+
),
|
|
833
|
+
migrations.CreateModel(
|
|
834
|
+
name='FindingClassification',
|
|
835
|
+
fields=[
|
|
836
|
+
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
837
|
+
('name', models.CharField(max_length=255, unique=True)),
|
|
838
|
+
('name_de', models.CharField(max_length=255, null=True, unique=True)),
|
|
839
|
+
('name_en', models.CharField(max_length=255, null=True, unique=True)),
|
|
840
|
+
('description', models.TextField(blank=True)),
|
|
841
|
+
('description_de', models.TextField(blank=True, null=True)),
|
|
842
|
+
('description_en', models.TextField(blank=True, null=True)),
|
|
843
|
+
('examinations', models.ManyToManyField(blank=True, related_name='finding_classifications', to='endoreg_db.examination')),
|
|
844
|
+
('findings', models.ManyToManyField(blank=True, related_name='finding_classifications', to='endoreg_db.finding')),
|
|
845
|
+
('choices', models.ManyToManyField(blank=True, related_name='classifications', to='endoreg_db.findingclassificationchoice')),
|
|
846
|
+
('classification_types', models.ManyToManyField(to='endoreg_db.findingclassificationtype')),
|
|
847
|
+
('finding_types', models.ManyToManyField(blank=True, related_name='finding_classifications', to='endoreg_db.findingtype')),
|
|
848
|
+
],
|
|
849
|
+
),
|
|
850
|
+
migrations.AddField(
|
|
851
|
+
model_name='center',
|
|
852
|
+
name='first_names',
|
|
853
|
+
field=models.ManyToManyField(related_name='centers', to='endoreg_db.firstname'),
|
|
854
|
+
),
|
|
855
|
+
migrations.CreateModel(
|
|
856
|
+
name='Employee',
|
|
857
|
+
fields=[
|
|
858
|
+
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
859
|
+
('first_name', models.CharField(max_length=255)),
|
|
860
|
+
('last_name', models.CharField(max_length=255)),
|
|
861
|
+
('dob', models.DateField(blank=True, null=True, verbose_name='Date of Birth')),
|
|
862
|
+
('email', models.EmailField(blank=True, max_length=255, null=True)),
|
|
863
|
+
('phone', models.CharField(blank=True, max_length=255, null=True)),
|
|
864
|
+
('is_real_person', models.BooleanField(default=True)),
|
|
865
|
+
('employee_type', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='employees', to='endoreg_db.employeetype')),
|
|
866
|
+
('gender', models.ForeignKey(null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.gender')),
|
|
867
|
+
],
|
|
868
|
+
options={
|
|
869
|
+
'abstract': False,
|
|
870
|
+
},
|
|
871
|
+
),
|
|
872
|
+
migrations.CreateModel(
|
|
873
|
+
name='InformationSource',
|
|
874
|
+
fields=[
|
|
875
|
+
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
876
|
+
('name', models.CharField(max_length=100)),
|
|
877
|
+
('url', models.URLField(blank=True, null=True)),
|
|
878
|
+
('description', models.TextField(blank=True, null=True)),
|
|
879
|
+
('date', models.DateField(blank=True, null=True)),
|
|
880
|
+
('date_created', models.DateField(auto_now_add=True)),
|
|
881
|
+
('date_modified', models.DateField(auto_now=True)),
|
|
882
|
+
('abbreviation', models.CharField(blank=True, max_length=100, null=True, unique=True)),
|
|
883
|
+
],
|
|
884
|
+
options={
|
|
885
|
+
'verbose_name': 'Information Source',
|
|
886
|
+
'verbose_name_plural': 'Information Sources',
|
|
887
|
+
'indexes': [models.Index(fields=['name'], name='endoreg_db__name_febac5_idx'), models.Index(fields=['abbreviation'], name='endoreg_db__abbrevi_5a07c4_idx')],
|
|
888
|
+
},
|
|
889
|
+
),
|
|
890
|
+
migrations.CreateModel(
|
|
891
|
+
name='InformationSourceType',
|
|
892
|
+
fields=[
|
|
893
|
+
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
894
|
+
('name', models.CharField(max_length=100, unique=True)),
|
|
895
|
+
('description', models.TextField(blank=True, null=True)),
|
|
896
|
+
('information_sources', models.ManyToManyField(blank=True, related_name='information_source_types', to='endoreg_db.informationsource')),
|
|
897
|
+
],
|
|
898
|
+
options={
|
|
899
|
+
'verbose_name': 'Information Source Type',
|
|
900
|
+
'verbose_name_plural': 'Information Source Types',
|
|
901
|
+
},
|
|
902
|
+
),
|
|
903
|
+
migrations.CreateModel(
|
|
904
|
+
name='LabelSet',
|
|
905
|
+
fields=[
|
|
906
|
+
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
907
|
+
('name', models.CharField(max_length=255)),
|
|
908
|
+
('description', models.TextField(blank=True, null=True)),
|
|
909
|
+
('version', models.IntegerField()),
|
|
910
|
+
('labels', models.ManyToManyField(related_name='label_sets', to='endoreg_db.label')),
|
|
911
|
+
],
|
|
912
|
+
),
|
|
913
|
+
migrations.AddField(
|
|
914
|
+
model_name='label',
|
|
915
|
+
name='label_type',
|
|
916
|
+
field=models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='labels', to='endoreg_db.labeltype'),
|
|
917
|
+
),
|
|
918
|
+
migrations.CreateModel(
|
|
919
|
+
name='LabelVideoSegment',
|
|
920
|
+
fields=[
|
|
921
|
+
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
922
|
+
('start_frame_number', models.IntegerField()),
|
|
923
|
+
('end_frame_number', models.IntegerField()),
|
|
924
|
+
('label', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.label')),
|
|
925
|
+
('source', models.ForeignKey(null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.informationsource')),
|
|
926
|
+
],
|
|
927
|
+
),
|
|
928
|
+
migrations.CreateModel(
|
|
929
|
+
name='LabelVideoSegmentState',
|
|
930
|
+
fields=[
|
|
931
|
+
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
932
|
+
('created_at', models.DateTimeField(auto_now_add=True)),
|
|
933
|
+
('updated_at', models.DateTimeField(auto_now=True)),
|
|
934
|
+
('prediction', models.BooleanField(default=False)),
|
|
935
|
+
('annotation', models.BooleanField(default=False)),
|
|
936
|
+
('frames_extracted', models.BooleanField(default=False)),
|
|
937
|
+
('is_validated', models.BooleanField(default=False)),
|
|
938
|
+
('origin', models.OneToOneField(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='state', to='endoreg_db.labelvideosegment')),
|
|
939
|
+
],
|
|
940
|
+
options={
|
|
941
|
+
'verbose_name': 'Label Video Segment State',
|
|
942
|
+
'verbose_name_plural': 'Label Video Segment States',
|
|
943
|
+
},
|
|
944
|
+
),
|
|
945
|
+
migrations.CreateModel(
|
|
946
|
+
name='LabValue',
|
|
947
|
+
fields=[
|
|
948
|
+
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
949
|
+
('name', models.CharField(max_length=255, unique=True)),
|
|
950
|
+
('abbreviation', models.CharField(blank=True, max_length=10, null=True)),
|
|
951
|
+
('numeric_precision', models.IntegerField(default=3)),
|
|
952
|
+
('default_normal_range', models.JSONField(blank=True, null=True)),
|
|
953
|
+
('normal_range_age_dependent', models.BooleanField(default=False)),
|
|
954
|
+
('normal_range_gender_dependent', models.BooleanField(default=False)),
|
|
955
|
+
('normal_range_special_case', models.BooleanField(default=False)),
|
|
956
|
+
('bound_adjustment_factor', models.FloatField(default=0.1, help_text='Factor for adjusting bounds when generating increased/decreased values, e.g., 0.1 for 10%.')),
|
|
957
|
+
('default_date_value_distribution', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='default_date_value_distribution', to='endoreg_db.datevaluedistribution')),
|
|
958
|
+
('default_multiple_categorical_value_distribution', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='default_multiple_categorical_value_distribution', to='endoreg_db.multiplecategoricalvaluedistribution')),
|
|
959
|
+
('default_numerical_value_distribution', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='default_numerical_value_distribution', to='endoreg_db.numericvaluedistribution')),
|
|
960
|
+
('default_single_categorical_value_distribution', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='default_single_categorical_value_distribution', to='endoreg_db.singlecategoricalvaluedistribution')),
|
|
961
|
+
('default_unit', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.unit')),
|
|
962
|
+
],
|
|
963
|
+
),
|
|
964
|
+
migrations.AddField(
|
|
965
|
+
model_name='findingintervention',
|
|
966
|
+
name='required_lab_values',
|
|
967
|
+
field=models.ManyToManyField(blank=True, related_name='required_by_finding_interventions', to='endoreg_db.labvalue'),
|
|
968
|
+
),
|
|
969
|
+
migrations.AddField(
|
|
970
|
+
model_name='center',
|
|
971
|
+
name='last_names',
|
|
972
|
+
field=models.ManyToManyField(related_name='centers', to='endoreg_db.lastname'),
|
|
973
|
+
),
|
|
974
|
+
migrations.CreateModel(
|
|
975
|
+
name='Material',
|
|
976
|
+
fields=[
|
|
977
|
+
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
978
|
+
('name', models.CharField(max_length=255)),
|
|
979
|
+
('emission_factor', models.ForeignKey(null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.emissionfactor')),
|
|
980
|
+
],
|
|
981
|
+
),
|
|
982
|
+
migrations.CreateModel(
|
|
983
|
+
name='MedicationSchedule',
|
|
984
|
+
fields=[
|
|
985
|
+
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
986
|
+
('name', models.CharField(max_length=255, unique=True)),
|
|
987
|
+
('description', models.TextField(blank=True, null=True)),
|
|
988
|
+
('therapy_duration_d', models.FloatField(blank=True, null=True)),
|
|
989
|
+
('dose', models.FloatField()),
|
|
990
|
+
('intake_times', models.ManyToManyField(to='endoreg_db.medicationintaketime')),
|
|
991
|
+
('medication', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.medication')),
|
|
992
|
+
('unit', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.unit')),
|
|
993
|
+
],
|
|
994
|
+
),
|
|
995
|
+
migrations.CreateModel(
|
|
996
|
+
name='MedicationIndication',
|
|
997
|
+
fields=[
|
|
998
|
+
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
999
|
+
('name', models.CharField(max_length=255, unique=True)),
|
|
1000
|
+
('disease_classification_choices', models.ManyToManyField(to='endoreg_db.diseaseclassificationchoice')),
|
|
1001
|
+
('diseases', models.ManyToManyField(to='endoreg_db.disease')),
|
|
1002
|
+
('events', models.ManyToManyField(to='endoreg_db.event')),
|
|
1003
|
+
('sources', models.ManyToManyField(to='endoreg_db.informationsource')),
|
|
1004
|
+
('indication_type', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='medication_indications', to='endoreg_db.medicationindicationtype')),
|
|
1005
|
+
('medication_schedules', models.ManyToManyField(to='endoreg_db.medicationschedule')),
|
|
1006
|
+
],
|
|
1007
|
+
),
|
|
1008
|
+
migrations.CreateModel(
|
|
1009
|
+
name='ModelMeta',
|
|
1010
|
+
fields=[
|
|
1011
|
+
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1012
|
+
('name', models.CharField(help_text="User-defined name for this specific model metadata set (e.g., 'segmentation_base').", max_length=255)),
|
|
1013
|
+
('version', models.CharField(help_text="Version identifier for this metadata set (e.g., '1', '2a').", max_length=255)),
|
|
1014
|
+
('activation', models.CharField(default='sigmoid', help_text="Output activation function (e.g., 'sigmoid', 'softmax', 'none').", max_length=50)),
|
|
1015
|
+
('weights', models.FileField(blank=True, help_text='Path to the model weights file (.ckpt), relative to MEDIA_ROOT.', null=True, upload_to='model_weights', validators=[django.core.validators.FileExtensionValidator(allowed_extensions=['ckpt'])])),
|
|
1016
|
+
('mean', models.CharField(default='0.45211223,0.27139644,0.19264949', help_text='Comma-separated mean values for input normalization.', max_length=255)),
|
|
1017
|
+
('std', models.CharField(default='0.31418097,0.21088019,0.16059452', help_text='Comma-separated standard deviation values for input normalization.', max_length=255)),
|
|
1018
|
+
('size_x', models.IntegerField(default=716, help_text='Expected input image width.')),
|
|
1019
|
+
('size_y', models.IntegerField(default=716, help_text='Expected input image height.')),
|
|
1020
|
+
('axes', models.CharField(default='2,0,1', help_text="Comma-separated target axis order (e.g., '2,0,1' for CHW).", max_length=10)),
|
|
1021
|
+
('batchsize', models.IntegerField(default=16, help_text='Default batch size for inference.')),
|
|
1022
|
+
('num_workers', models.IntegerField(default=0, help_text='Default number of workers for data loading.')),
|
|
1023
|
+
('description', models.TextField(blank=True, help_text='Optional description.', null=True)),
|
|
1024
|
+
('date_created', models.DateTimeField(auto_now_add=True)),
|
|
1025
|
+
('labelset', models.ForeignKey(help_text='The set of labels this model version predicts.', on_delete=django.db.models.deletion.CASCADE, related_name='model_metadata', to='endoreg_db.labelset')),
|
|
1026
|
+
('model', models.ForeignKey(help_text='The base AI model architecture this metadata belongs to.', on_delete=django.db.models.deletion.CASCADE, related_name='metadata_versions', to='endoreg_db.aimodel')),
|
|
1027
|
+
],
|
|
1028
|
+
),
|
|
1029
|
+
migrations.AddField(
|
|
1030
|
+
model_name='aimodel',
|
|
1031
|
+
name='active_meta',
|
|
1032
|
+
field=models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.SET_NULL, related_name='active_model', to='endoreg_db.modelmeta'),
|
|
1033
|
+
),
|
|
1034
|
+
migrations.CreateModel(
|
|
1035
|
+
name='ActiveModel',
|
|
1036
|
+
fields=[
|
|
1037
|
+
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1038
|
+
('name', models.CharField(max_length=255, unique=True)),
|
|
1039
|
+
('model_meta', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.modelmeta')),
|
|
1040
|
+
],
|
|
1041
|
+
),
|
|
1042
|
+
migrations.AddField(
|
|
1043
|
+
model_name='aimodel',
|
|
1044
|
+
name='model_type',
|
|
1045
|
+
field=models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='ai_models', to='endoreg_db.modeltype'),
|
|
1046
|
+
),
|
|
1047
|
+
migrations.CreateModel(
|
|
1048
|
+
name='Organ',
|
|
1049
|
+
fields=[
|
|
1050
|
+
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1051
|
+
('name', models.CharField(max_length=100, unique=True)),
|
|
1052
|
+
('description', models.TextField(blank=True, null=True)),
|
|
1053
|
+
('location_choices', models.ManyToManyField(blank=True, related_name='organs', to='endoreg_db.findingclassificationchoice')),
|
|
1054
|
+
],
|
|
1055
|
+
),
|
|
1056
|
+
migrations.CreateModel(
|
|
1057
|
+
name='Patient',
|
|
1058
|
+
fields=[
|
|
1059
|
+
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1060
|
+
('email', models.EmailField(blank=True, max_length=255, null=True)),
|
|
1061
|
+
('phone', models.CharField(blank=True, max_length=255, null=True)),
|
|
1062
|
+
('is_real_person', models.BooleanField(default=True)),
|
|
1063
|
+
('first_name', models.CharField(max_length=100)),
|
|
1064
|
+
('last_name', models.CharField(max_length=100)),
|
|
1065
|
+
('dob', models.DateField(blank=True, null=True)),
|
|
1066
|
+
('patient_hash', models.CharField(blank=True, max_length=255, null=True)),
|
|
1067
|
+
('center', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.center')),
|
|
1068
|
+
('gender', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.gender')),
|
|
1069
|
+
],
|
|
1070
|
+
options={
|
|
1071
|
+
'abstract': False,
|
|
1072
|
+
},
|
|
1073
|
+
),
|
|
1074
|
+
migrations.CreateModel(
|
|
1075
|
+
name='PatientDisease',
|
|
1032
1076
|
fields=[
|
|
1033
1077
|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1034
|
-
('
|
|
1035
|
-
('
|
|
1036
|
-
('
|
|
1037
|
-
('
|
|
1038
|
-
('
|
|
1039
|
-
('
|
|
1078
|
+
('start_date', models.DateField(blank=True, null=True)),
|
|
1079
|
+
('end_date', models.DateField(blank=True, null=True)),
|
|
1080
|
+
('numerical_descriptors', models.JSONField(default=dict)),
|
|
1081
|
+
('subcategories', models.JSONField(default=dict)),
|
|
1082
|
+
('last_update', models.DateTimeField(auto_now=True)),
|
|
1083
|
+
('classification_choices', models.ManyToManyField(to='endoreg_db.diseaseclassificationchoice')),
|
|
1084
|
+
('disease', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='patient_diseases', to='endoreg_db.disease')),
|
|
1085
|
+
('patient', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='diseases', to='endoreg_db.patient')),
|
|
1040
1086
|
],
|
|
1087
|
+
options={
|
|
1088
|
+
'verbose_name': 'Patient Disease',
|
|
1089
|
+
'verbose_name_plural': 'Patient Diseases',
|
|
1090
|
+
},
|
|
1041
1091
|
),
|
|
1042
1092
|
migrations.CreateModel(
|
|
1043
|
-
name='
|
|
1093
|
+
name='PatientEvent',
|
|
1044
1094
|
fields=[
|
|
1045
1095
|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1046
|
-
('
|
|
1047
|
-
('
|
|
1048
|
-
('
|
|
1049
|
-
('
|
|
1050
|
-
('
|
|
1096
|
+
('date_start', models.DateField()),
|
|
1097
|
+
('date_end', models.DateField(blank=True, null=True)),
|
|
1098
|
+
('description', models.TextField(blank=True, null=True)),
|
|
1099
|
+
('subcategories', models.JSONField(default=dict)),
|
|
1100
|
+
('numerical_descriptors', models.JSONField(default=dict)),
|
|
1101
|
+
('last_update', models.DateTimeField(auto_now=True)),
|
|
1102
|
+
('classification_choice', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.eventclassificationchoice')),
|
|
1103
|
+
('event', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='patient_events', to='endoreg_db.event')),
|
|
1104
|
+
('patient', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='events', to='endoreg_db.patient')),
|
|
1051
1105
|
],
|
|
1052
1106
|
),
|
|
1053
|
-
migrations.
|
|
1054
|
-
|
|
1055
|
-
|
|
1056
|
-
|
|
1107
|
+
migrations.CreateModel(
|
|
1108
|
+
name='PatientExamination',
|
|
1109
|
+
fields=[
|
|
1110
|
+
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1111
|
+
('date_start', models.DateField(blank=True, null=True)),
|
|
1112
|
+
('date_end', models.DateField(blank=True, null=True)),
|
|
1113
|
+
('hash', models.CharField(max_length=255, unique=True)),
|
|
1114
|
+
('examination', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.examination')),
|
|
1115
|
+
('patient', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='patient_examinations', to='endoreg_db.patient')),
|
|
1116
|
+
],
|
|
1117
|
+
options={
|
|
1118
|
+
'verbose_name': 'Patient Examination',
|
|
1119
|
+
'verbose_name_plural': 'Patient Examinations',
|
|
1120
|
+
'ordering': ['patient', 'examination', 'date_start'],
|
|
1121
|
+
},
|
|
1057
1122
|
),
|
|
1058
|
-
migrations.
|
|
1059
|
-
|
|
1060
|
-
|
|
1061
|
-
|
|
1123
|
+
migrations.CreateModel(
|
|
1124
|
+
name='Case',
|
|
1125
|
+
fields=[
|
|
1126
|
+
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1127
|
+
('hash', models.CharField(blank=True, help_text='An optional hash value associated with the case.', max_length=255, null=True)),
|
|
1128
|
+
('start_date', models.DateTimeField(db_index=True, help_text='The start date and time of the case.')),
|
|
1129
|
+
('end_date', models.DateTimeField(blank=True, help_text='The end date and time of the case (optional).', null=True)),
|
|
1130
|
+
('is_active', models.BooleanField(db_index=True, default=True, help_text='Flag indicating if the case is currently active.')),
|
|
1131
|
+
('is_closed', models.BooleanField(db_index=True, default=False, help_text='Flag indicating if the case has been closed.')),
|
|
1132
|
+
('is_deleted', models.BooleanField(db_index=True, default=False, help_text='Flag indicating if the case is marked as deleted.')),
|
|
1133
|
+
('created_at', models.DateTimeField(auto_now_add=True, help_text='The date and time the case was created.')),
|
|
1134
|
+
('updated_at', models.DateTimeField(auto_now=True, help_text='The date and time the case was last updated.')),
|
|
1135
|
+
('patient', models.ForeignKey(help_text='The patient associated with this case.', on_delete=django.db.models.deletion.CASCADE, related_name='cases', to='endoreg_db.patient')),
|
|
1136
|
+
('patient_examinations', models.ManyToManyField(help_text='The examinations included in this case.', related_name='cases', to='endoreg_db.patientexamination')),
|
|
1137
|
+
],
|
|
1138
|
+
options={
|
|
1139
|
+
'verbose_name': 'Case',
|
|
1140
|
+
'verbose_name_plural': 'Cases',
|
|
1141
|
+
'ordering': ['-start_date', 'patient'],
|
|
1142
|
+
},
|
|
1062
1143
|
),
|
|
1063
1144
|
migrations.CreateModel(
|
|
1064
|
-
name='
|
|
1145
|
+
name='AnonymExaminationReport',
|
|
1065
1146
|
fields=[
|
|
1066
1147
|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1067
|
-
('
|
|
1068
|
-
('
|
|
1069
|
-
('
|
|
1148
|
+
('meta', models.JSONField(blank=True, null=True)),
|
|
1149
|
+
('text', models.TextField(blank=True, null=True)),
|
|
1150
|
+
('date', models.DateField(blank=True, null=True)),
|
|
1151
|
+
('time', models.TimeField(blank=True, null=True)),
|
|
1152
|
+
('file', models.FileField(blank=True, null=True, upload_to=pathlib.PurePosixPath('pdfs'))),
|
|
1153
|
+
('center', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.center')),
|
|
1154
|
+
('type', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.documenttype')),
|
|
1155
|
+
('examiners', models.ManyToManyField(blank=True, to='endoreg_db.examiner')),
|
|
1156
|
+
('patient', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.DO_NOTHING, to='endoreg_db.patient')),
|
|
1157
|
+
('patient_examination', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.patientexamination')),
|
|
1070
1158
|
],
|
|
1159
|
+
options={
|
|
1160
|
+
'abstract': False,
|
|
1161
|
+
},
|
|
1071
1162
|
),
|
|
1072
|
-
migrations.
|
|
1073
|
-
|
|
1074
|
-
|
|
1075
|
-
|
|
1163
|
+
migrations.CreateModel(
|
|
1164
|
+
name='PatientExaminationIndication',
|
|
1165
|
+
fields=[
|
|
1166
|
+
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1167
|
+
('examination_indication', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.examinationindication')),
|
|
1168
|
+
('indication_choice', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.examinationindicationclassificationchoice')),
|
|
1169
|
+
('patient_examination', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='indications', to='endoreg_db.patientexamination')),
|
|
1170
|
+
],
|
|
1076
1171
|
),
|
|
1077
|
-
migrations.
|
|
1078
|
-
|
|
1079
|
-
|
|
1080
|
-
|
|
1172
|
+
migrations.CreateModel(
|
|
1173
|
+
name='PatientFinding',
|
|
1174
|
+
fields=[
|
|
1175
|
+
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1176
|
+
('created_at', models.DateTimeField(auto_now_add=True)),
|
|
1177
|
+
('updated_at', models.DateTimeField(auto_now=True)),
|
|
1178
|
+
('is_active', models.BooleanField(default=True, help_text='Deaktiviert statt gelöscht für Audit-Trail')),
|
|
1179
|
+
('deactivated_at', models.DateTimeField(blank=True, null=True)),
|
|
1180
|
+
('created_by', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.PROTECT, related_name='created_findings', to=settings.AUTH_USER_MODEL)),
|
|
1181
|
+
('deactivated_by', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.PROTECT, related_name='deactivated_findings', to=settings.AUTH_USER_MODEL)),
|
|
1182
|
+
('finding', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='finding_patient_findings', to='endoreg_db.finding')),
|
|
1183
|
+
('patient_examination', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='patient_findings', to='endoreg_db.patientexamination')),
|
|
1184
|
+
('updated_by', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.PROTECT, related_name='updated_findings', to=settings.AUTH_USER_MODEL)),
|
|
1185
|
+
],
|
|
1186
|
+
options={
|
|
1187
|
+
'verbose_name': 'Patient Finding',
|
|
1188
|
+
'verbose_name_plural': 'Patient Findings',
|
|
1189
|
+
'ordering': ['patient_examination', 'finding'],
|
|
1190
|
+
},
|
|
1081
1191
|
),
|
|
1082
1192
|
migrations.AddField(
|
|
1083
|
-
model_name='
|
|
1084
|
-
name='
|
|
1085
|
-
field=models.
|
|
1193
|
+
model_name='labelvideosegment',
|
|
1194
|
+
name='patient_findings',
|
|
1195
|
+
field=models.ManyToManyField(blank=True, related_name='video_segments', to='endoreg_db.patientfinding'),
|
|
1086
1196
|
),
|
|
1087
|
-
migrations.
|
|
1088
|
-
|
|
1089
|
-
|
|
1090
|
-
|
|
1197
|
+
migrations.CreateModel(
|
|
1198
|
+
name='PatientFindingClassification',
|
|
1199
|
+
fields=[
|
|
1200
|
+
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1201
|
+
('is_active', models.BooleanField(default=True, help_text='Indicates if the classification is currently active.')),
|
|
1202
|
+
('subcategories', models.JSONField(blank=True, null=True)),
|
|
1203
|
+
('numerical_descriptors', models.JSONField(blank=True, null=True)),
|
|
1204
|
+
('classification', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='patient_finding_classifications', to='endoreg_db.findingclassification')),
|
|
1205
|
+
('classification_choice', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='patient_finding_classifications', to='endoreg_db.findingclassificationchoice')),
|
|
1206
|
+
('finding', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='classifications', to='endoreg_db.patientfinding')),
|
|
1207
|
+
],
|
|
1208
|
+
options={
|
|
1209
|
+
'verbose_name': 'Patient Finding Classification',
|
|
1210
|
+
'verbose_name_plural': 'Patient Finding Classifications',
|
|
1211
|
+
'ordering': ['finding', 'classification', 'classification_choice'],
|
|
1212
|
+
},
|
|
1091
1213
|
),
|
|
1092
|
-
migrations.
|
|
1093
|
-
|
|
1094
|
-
|
|
1095
|
-
|
|
1214
|
+
migrations.CreateModel(
|
|
1215
|
+
name='PatientFindingIntervention',
|
|
1216
|
+
fields=[
|
|
1217
|
+
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1218
|
+
('is_active', models.BooleanField(default=True, help_text='Indicates if the intervention is currently active.')),
|
|
1219
|
+
('state', models.CharField(blank=True, max_length=100, null=True)),
|
|
1220
|
+
('time_start', models.DateTimeField(blank=True, null=True)),
|
|
1221
|
+
('time_end', models.DateTimeField(blank=True, null=True)),
|
|
1222
|
+
('date', models.DateField(blank=True, null=True)),
|
|
1223
|
+
('finding', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='interventions', to='endoreg_db.patientfinding')),
|
|
1224
|
+
('intervention', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='patient_finding_interventions', to='endoreg_db.findingintervention')),
|
|
1225
|
+
],
|
|
1096
1226
|
),
|
|
1097
1227
|
migrations.CreateModel(
|
|
1098
|
-
name='
|
|
1228
|
+
name='PatientLabSample',
|
|
1099
1229
|
fields=[
|
|
1100
1230
|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1101
|
-
('date', models.
|
|
1102
|
-
('
|
|
1103
|
-
('
|
|
1104
|
-
('pdf_type', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.pdftype')),
|
|
1231
|
+
('date', models.DateTimeField()),
|
|
1232
|
+
('patient', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='lab_samples', to='endoreg_db.patient')),
|
|
1233
|
+
('sample_type', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.patientlabsampletype')),
|
|
1105
1234
|
],
|
|
1106
1235
|
),
|
|
1236
|
+
migrations.CreateModel(
|
|
1237
|
+
name='PatientMedication',
|
|
1238
|
+
fields=[
|
|
1239
|
+
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1240
|
+
('dosage', models.JSONField(blank=True, null=True)),
|
|
1241
|
+
('active', models.BooleanField(default=True)),
|
|
1242
|
+
('intake_times', models.ManyToManyField(blank=True, related_name='intake_time_patient_medications', to='endoreg_db.medicationintaketime')),
|
|
1243
|
+
('medication', models.ForeignKey(blank=True, on_delete=django.db.models.deletion.CASCADE, related_name='medication_patient_medications', to='endoreg_db.medication')),
|
|
1244
|
+
('medication_indication', models.ForeignKey(null=True, on_delete=django.db.models.deletion.CASCADE, related_name='indication_patient_medications', to='endoreg_db.medicationindication')),
|
|
1245
|
+
('patient', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.patient')),
|
|
1246
|
+
('unit', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.unit')),
|
|
1247
|
+
],
|
|
1248
|
+
options={
|
|
1249
|
+
'verbose_name': 'Patient Medication',
|
|
1250
|
+
'verbose_name_plural': 'Patient Medications',
|
|
1251
|
+
},
|
|
1252
|
+
),
|
|
1107
1253
|
migrations.CreateModel(
|
|
1108
1254
|
name='PatientMedicationSchedule',
|
|
1109
1255
|
fields=[
|
|
1110
1256
|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1111
1257
|
('created_at', models.DateTimeField(auto_now_add=True)),
|
|
1112
1258
|
('updated_at', models.DateTimeField(auto_now=True)),
|
|
1113
|
-
('medication', models.ManyToManyField(related_name='patient_medication_schedules', to='endoreg_db.patientmedication')),
|
|
1259
|
+
('medication', models.ManyToManyField(blank=True, related_name='patient_medication_schedules', to='endoreg_db.patientmedication')),
|
|
1114
1260
|
('patient', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.patient')),
|
|
1115
1261
|
],
|
|
1116
1262
|
),
|
|
1117
|
-
migrations.
|
|
1118
|
-
|
|
1119
|
-
|
|
1120
|
-
|
|
1263
|
+
migrations.CreateModel(
|
|
1264
|
+
name='PdfMeta',
|
|
1265
|
+
fields=[
|
|
1266
|
+
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1267
|
+
('date', models.DateField()),
|
|
1268
|
+
('time', models.TimeField()),
|
|
1269
|
+
('pdf_hash', models.CharField(max_length=255, unique=True)),
|
|
1270
|
+
('pdf_type', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.pdftype')),
|
|
1271
|
+
],
|
|
1121
1272
|
),
|
|
1122
1273
|
migrations.CreateModel(
|
|
1123
|
-
name='
|
|
1274
|
+
name='CenterProduct',
|
|
1124
1275
|
fields=[
|
|
1125
1276
|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1126
|
-
('
|
|
1127
|
-
('
|
|
1128
|
-
('
|
|
1129
|
-
('normal_range', models.JSONField(default=dict)),
|
|
1130
|
-
('lab_value', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.labvalue')),
|
|
1131
|
-
('patient', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='lab_values', to='endoreg_db.patient')),
|
|
1132
|
-
('sample', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='values', to='endoreg_db.patientlabsample')),
|
|
1133
|
-
('unit', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.unit')),
|
|
1277
|
+
('date_used', models.DateField()),
|
|
1278
|
+
('center', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='center_products', to='endoreg_db.center')),
|
|
1279
|
+
('product', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='center_products', to='endoreg_db.product')),
|
|
1134
1280
|
],
|
|
1281
|
+
options={
|
|
1282
|
+
'verbose_name': 'Center Product Usage',
|
|
1283
|
+
'verbose_name_plural': 'Center Product Usages',
|
|
1284
|
+
'ordering': ['center', '-date_used', 'product'],
|
|
1285
|
+
},
|
|
1135
1286
|
),
|
|
1136
1287
|
migrations.AddField(
|
|
1137
|
-
model_name='
|
|
1138
|
-
name='
|
|
1139
|
-
field=models.ForeignKey(on_delete=django.db.models.deletion.
|
|
1288
|
+
model_name='product',
|
|
1289
|
+
name='product_group',
|
|
1290
|
+
field=models.ForeignKey(null=True, on_delete=django.db.models.deletion.SET_NULL, related_name='products', to='endoreg_db.productgroup'),
|
|
1140
1291
|
),
|
|
1141
1292
|
migrations.CreateModel(
|
|
1142
|
-
name='
|
|
1293
|
+
name='PortalUserInfo',
|
|
1143
1294
|
fields=[
|
|
1144
1295
|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1145
|
-
('
|
|
1146
|
-
('
|
|
1147
|
-
('
|
|
1148
|
-
('
|
|
1296
|
+
('works_in_endoscopy', models.BooleanField(blank=True, null=True)),
|
|
1297
|
+
('examiner', models.OneToOneField(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='portal_user_info', to='endoreg_db.examiner')),
|
|
1298
|
+
('user', models.OneToOneField(on_delete=django.db.models.deletion.CASCADE, to=settings.AUTH_USER_MODEL)),
|
|
1299
|
+
('profession', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='portal_user_infos', to='endoreg_db.profession')),
|
|
1149
1300
|
],
|
|
1150
|
-
|
|
1151
|
-
|
|
1152
|
-
|
|
1153
|
-
|
|
1154
|
-
|
|
1301
|
+
),
|
|
1302
|
+
migrations.AddField(
|
|
1303
|
+
model_name='employeetype',
|
|
1304
|
+
name='qualifications',
|
|
1305
|
+
field=models.ManyToManyField(related_name='employee_types', to='endoreg_db.qualification'),
|
|
1155
1306
|
),
|
|
1156
1307
|
migrations.CreateModel(
|
|
1157
|
-
name='
|
|
1308
|
+
name='EmployeeQualification',
|
|
1158
1309
|
fields=[
|
|
1159
1310
|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1160
|
-
('
|
|
1161
|
-
('
|
|
1162
|
-
('description', models.TextField(blank=True, null=True)),
|
|
1163
|
-
('last_update', models.DateTimeField(auto_now=True)),
|
|
1164
|
-
('event', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.event')),
|
|
1165
|
-
('patient', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.patient')),
|
|
1311
|
+
('employee', models.OneToOneField(on_delete=django.db.models.deletion.CASCADE, related_name='qualification', to='endoreg_db.employee')),
|
|
1312
|
+
('qualifications', models.ManyToManyField(related_name='employee_qualifications', to='endoreg_db.qualification')),
|
|
1166
1313
|
],
|
|
1167
1314
|
),
|
|
1315
|
+
migrations.AddField(
|
|
1316
|
+
model_name='qualification',
|
|
1317
|
+
name='qualification_types',
|
|
1318
|
+
field=models.ManyToManyField(related_name='qualifications', to='endoreg_db.qualificationtype'),
|
|
1319
|
+
),
|
|
1168
1320
|
migrations.CreateModel(
|
|
1169
|
-
name='
|
|
1321
|
+
name='ReferenceProduct',
|
|
1170
1322
|
fields=[
|
|
1171
1323
|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1172
|
-
('
|
|
1173
|
-
('
|
|
1174
|
-
('
|
|
1175
|
-
('
|
|
1176
|
-
('
|
|
1177
|
-
('
|
|
1324
|
+
('name', models.CharField(max_length=255)),
|
|
1325
|
+
('emission_factor_package', models.ForeignKey(null=True, on_delete=django.db.models.deletion.SET_NULL, related_name='reference_product_package', to='endoreg_db.emissionfactor')),
|
|
1326
|
+
('emission_factor_product', models.ForeignKey(null=True, on_delete=django.db.models.deletion.SET_NULL, related_name='reference_product_product', to='endoreg_db.emissionfactor')),
|
|
1327
|
+
('emission_factor_total', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.SET_NULL, related_name='reference_products', to='endoreg_db.emissionfactor')),
|
|
1328
|
+
('product', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='reference_products', to='endoreg_db.product')),
|
|
1329
|
+
('product_group', models.OneToOneField(on_delete=django.db.models.deletion.CASCADE, related_name='reference_product', to='endoreg_db.productgroup')),
|
|
1178
1330
|
],
|
|
1179
1331
|
),
|
|
1180
1332
|
migrations.CreateModel(
|
|
1181
|
-
name='
|
|
1333
|
+
name='ReportReaderConfig',
|
|
1182
1334
|
fields=[
|
|
1183
1335
|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1184
|
-
('
|
|
1185
|
-
('
|
|
1186
|
-
('
|
|
1187
|
-
('
|
|
1188
|
-
('
|
|
1189
|
-
('
|
|
1190
|
-
('
|
|
1191
|
-
('
|
|
1336
|
+
('locale', models.CharField(default='de_DE', max_length=10)),
|
|
1337
|
+
('text_date_format', models.CharField(default='%d.%m.%Y', max_length=10)),
|
|
1338
|
+
('first_names', models.ManyToManyField(related_name='report_reader_configs', to='endoreg_db.firstname')),
|
|
1339
|
+
('last_names', models.ManyToManyField(related_name='report_reader_configs', to='endoreg_db.lastname')),
|
|
1340
|
+
('cut_off_above', models.ManyToManyField(related_name='report_reader_configs_cut_off_above', to='endoreg_db.reportreaderflag')),
|
|
1341
|
+
('cut_off_below', models.ManyToManyField(related_name='report_reader_configs_cut_off_below', to='endoreg_db.reportreaderflag')),
|
|
1342
|
+
('endoscope_info_line_flag', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='report_reader_configs_endoscope_info_line', to='endoreg_db.reportreaderflag')),
|
|
1343
|
+
('examiner_info_line_flag', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='report_reader_configs_examiner_info_line', to='endoreg_db.reportreaderflag')),
|
|
1344
|
+
('patient_info_line_flag', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='report_reader_configs_patient_info_line', to='endoreg_db.reportreaderflag')),
|
|
1192
1345
|
],
|
|
1193
|
-
options={
|
|
1194
|
-
'verbose_name': 'Network Device Log Entry',
|
|
1195
|
-
'verbose_name_plural': 'Network Device Log Entries',
|
|
1196
|
-
},
|
|
1197
1346
|
),
|
|
1198
1347
|
migrations.AddField(
|
|
1199
|
-
model_name='
|
|
1200
|
-
name='
|
|
1201
|
-
field=models.
|
|
1348
|
+
model_name='pdftype',
|
|
1349
|
+
name='cut_off_above_lines',
|
|
1350
|
+
field=models.ManyToManyField(related_name='pdf_type_cut_off_above_lines', to='endoreg_db.reportreaderflag'),
|
|
1202
1351
|
),
|
|
1203
1352
|
migrations.AddField(
|
|
1204
|
-
model_name='
|
|
1205
|
-
name='
|
|
1206
|
-
field=models.
|
|
1353
|
+
model_name='pdftype',
|
|
1354
|
+
name='cut_off_below_lines',
|
|
1355
|
+
field=models.ManyToManyField(related_name='pdf_type_cut_off_below_lines', to='endoreg_db.reportreaderflag'),
|
|
1207
1356
|
),
|
|
1208
1357
|
migrations.AddField(
|
|
1209
|
-
model_name='
|
|
1210
|
-
name='
|
|
1211
|
-
field=models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.
|
|
1358
|
+
model_name='pdftype',
|
|
1359
|
+
name='endoscope_info_line',
|
|
1360
|
+
field=models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='pdf_type_endoscopy_info_line', to='endoreg_db.reportreaderflag'),
|
|
1212
1361
|
),
|
|
1213
1362
|
migrations.AddField(
|
|
1214
|
-
model_name='
|
|
1215
|
-
name='
|
|
1216
|
-
field=models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='
|
|
1363
|
+
model_name='pdftype',
|
|
1364
|
+
name='examiner_info_line',
|
|
1365
|
+
field=models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='pdf_type_examiner_info_line', to='endoreg_db.reportreaderflag'),
|
|
1217
1366
|
),
|
|
1218
1367
|
migrations.AddField(
|
|
1219
|
-
model_name='
|
|
1220
|
-
name='
|
|
1221
|
-
field=models.
|
|
1368
|
+
model_name='pdftype',
|
|
1369
|
+
name='patient_info_line',
|
|
1370
|
+
field=models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='pdf_type_patient_info_line', to='endoreg_db.reportreaderflag'),
|
|
1222
1371
|
),
|
|
1223
|
-
migrations.
|
|
1224
|
-
|
|
1225
|
-
|
|
1226
|
-
|
|
1372
|
+
migrations.CreateModel(
|
|
1373
|
+
name='Requirement',
|
|
1374
|
+
fields=[
|
|
1375
|
+
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1376
|
+
('name', models.CharField(max_length=100, unique=True)),
|
|
1377
|
+
('description', models.TextField(blank=True, null=True)),
|
|
1378
|
+
('numeric_value', models.FloatField(blank=True, help_text='Numeric value for the requirement. If not set, the requirement is not used in calculations.', null=True)),
|
|
1379
|
+
('numeric_value_min', models.FloatField(blank=True, help_text='Minimum numeric value for the requirement. If not set, the requirement is not used in calculations.', null=True)),
|
|
1380
|
+
('numeric_value_max', models.FloatField(blank=True, help_text='Maximum numeric value for the requirement. If not set, the requirement is not used in calculations.', null=True)),
|
|
1381
|
+
('string_value', models.CharField(blank=True, help_text='String value for the requirement. If not set, the requirement is not used in calculations.', max_length=100, null=True)),
|
|
1382
|
+
('string_values', models.TextField(blank=True, help_text=" ','-separated list of string values for the requirement.If not set, the requirement is not used in calculations.", null=True)),
|
|
1383
|
+
('disease_classification_choices', models.ManyToManyField(blank=True, related_name='required_in', to='endoreg_db.diseaseclassificationchoice')),
|
|
1384
|
+
('diseases', models.ManyToManyField(blank=True, related_name='required_in', to='endoreg_db.disease')),
|
|
1385
|
+
('events', models.ManyToManyField(blank=True, related_name='required_in', to='endoreg_db.event')),
|
|
1386
|
+
('examination_indications', models.ManyToManyField(blank=True, related_name='required_in', to='endoreg_db.examinationindication')),
|
|
1387
|
+
('examinations', models.ManyToManyField(blank=True, related_name='required_in', to='endoreg_db.examination')),
|
|
1388
|
+
('finding_classification_choices', models.ManyToManyField(blank=True, related_name='required_in', to='endoreg_db.findingclassificationchoice')),
|
|
1389
|
+
('finding_classifications', models.ManyToManyField(blank=True, related_name='required_in', to='endoreg_db.findingclassification')),
|
|
1390
|
+
('finding_interventions', models.ManyToManyField(blank=True, related_name='required_in', to='endoreg_db.findingintervention')),
|
|
1391
|
+
('findings', models.ManyToManyField(blank=True, related_name='required_in', to='endoreg_db.finding')),
|
|
1392
|
+
('genders', models.ManyToManyField(blank=True, related_name='required_in', to='endoreg_db.gender')),
|
|
1393
|
+
('lab_values', models.ManyToManyField(blank=True, related_name='required_in', to='endoreg_db.labvalue')),
|
|
1394
|
+
('medication_indications', models.ManyToManyField(blank=True, related_name='required_in', to='endoreg_db.medicationindication')),
|
|
1395
|
+
('medication_intake_times', models.ManyToManyField(blank=True, related_name='required_in', to='endoreg_db.medicationintaketime')),
|
|
1396
|
+
('medication_schedules', models.ManyToManyField(blank=True, related_name='required_in', to='endoreg_db.medicationschedule')),
|
|
1397
|
+
('medications', models.ManyToManyField(blank=True, related_name='required_in', to='endoreg_db.medication')),
|
|
1398
|
+
('operators', models.ManyToManyField(blank=True, related_name='required_in', to='endoreg_db.requirementoperator')),
|
|
1399
|
+
('requirement_types', models.ManyToManyField(blank=True, related_name='linked_requirements', to='endoreg_db.requirementtype')),
|
|
1400
|
+
('unit', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='required_in', to='endoreg_db.unit')),
|
|
1401
|
+
],
|
|
1402
|
+
),
|
|
1403
|
+
migrations.CreateModel(
|
|
1404
|
+
name='Risk',
|
|
1405
|
+
fields=[
|
|
1406
|
+
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1407
|
+
('name', models.CharField(max_length=100, unique=True)),
|
|
1408
|
+
('name_de', models.CharField(blank=True, max_length=100, null=True)),
|
|
1409
|
+
('name_en', models.CharField(blank=True, max_length=100, null=True)),
|
|
1410
|
+
('description', models.TextField(blank=True, null=True)),
|
|
1411
|
+
('risk_value', models.FloatField(blank=True, help_text='Risk value for the risk. If not set, the risk is not used in calculations.', null=True)),
|
|
1412
|
+
('risk_type', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='risks', to='endoreg_db.risktype')),
|
|
1413
|
+
],
|
|
1227
1414
|
),
|
|
1228
|
-
migrations.
|
|
1229
|
-
|
|
1230
|
-
|
|
1231
|
-
|
|
1415
|
+
migrations.CreateModel(
|
|
1416
|
+
name='Rule',
|
|
1417
|
+
fields=[
|
|
1418
|
+
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1419
|
+
('name', models.CharField(max_length=255, unique=True)),
|
|
1420
|
+
('description', models.TextField(blank=True, null=True)),
|
|
1421
|
+
('attribute_key', models.CharField(max_length=255)),
|
|
1422
|
+
('attribute_dtype', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.ruleattributedtype')),
|
|
1423
|
+
('rule_type', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.ruletype')),
|
|
1424
|
+
],
|
|
1425
|
+
options={
|
|
1426
|
+
'verbose_name': 'Rule',
|
|
1427
|
+
'verbose_name_plural': 'Rules',
|
|
1428
|
+
},
|
|
1429
|
+
),
|
|
1430
|
+
migrations.CreateModel(
|
|
1431
|
+
name='Ruleset',
|
|
1432
|
+
fields=[
|
|
1433
|
+
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1434
|
+
('name', models.CharField(max_length=255, unique=True)),
|
|
1435
|
+
('rules', models.ManyToManyField(to='endoreg_db.rule')),
|
|
1436
|
+
],
|
|
1437
|
+
),
|
|
1438
|
+
migrations.CreateModel(
|
|
1439
|
+
name='SensitiveMeta',
|
|
1440
|
+
fields=[
|
|
1441
|
+
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1442
|
+
('examination_date', models.DateField(blank=True, null=True)),
|
|
1443
|
+
('patient_first_name', models.CharField(blank=True, max_length=255, null=True)),
|
|
1444
|
+
('patient_last_name', models.CharField(blank=True, max_length=255, null=True)),
|
|
1445
|
+
('patient_dob', models.DateTimeField(blank=True, help_text='Date of birth (can be auto-generated if missing).', null=True)),
|
|
1446
|
+
('examiner_first_name', models.CharField(blank=True, editable=False, max_length=255, null=True)),
|
|
1447
|
+
('examiner_last_name', models.CharField(blank=True, editable=False, max_length=255, null=True)),
|
|
1448
|
+
('examination_hash', models.CharField(blank=True, db_index=True, editable=False, max_length=64, null=True)),
|
|
1449
|
+
('patient_hash', models.CharField(blank=True, db_index=True, editable=False, max_length=64, null=True)),
|
|
1450
|
+
('endoscope_type', models.CharField(blank=True, max_length=255, null=True)),
|
|
1451
|
+
('endoscope_sn', models.CharField(blank=True, max_length=255, null=True)),
|
|
1452
|
+
('center', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.center')),
|
|
1453
|
+
('examiners', models.ManyToManyField(blank=True, help_text='Pseudo-anonymized examiner(s) associated with the examination.', to='endoreg_db.examiner')),
|
|
1454
|
+
('patient_gender', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.gender')),
|
|
1455
|
+
('pseudo_examination', models.ForeignKey(blank=True, help_text='FK to the pseudo-anonymized PatientExamination record.', null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.patientexamination')),
|
|
1456
|
+
('pseudo_patient', models.ForeignKey(blank=True, help_text='FK to the pseudo-anonymized Patient record.', null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.patient')),
|
|
1457
|
+
],
|
|
1232
1458
|
),
|
|
1233
1459
|
migrations.CreateModel(
|
|
1234
|
-
name='
|
|
1460
|
+
name='RawPdfFile',
|
|
1235
1461
|
fields=[
|
|
1236
1462
|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1463
|
+
('pdf_hash', models.CharField(max_length=255, unique=True)),
|
|
1464
|
+
('text', models.TextField(blank=True, null=True)),
|
|
1237
1465
|
('date_created', models.DateTimeField(auto_now_add=True)),
|
|
1238
1466
|
('date_modified', models.DateTimeField(auto_now=True)),
|
|
1239
|
-
('
|
|
1240
|
-
('
|
|
1241
|
-
('
|
|
1467
|
+
('anonymized', models.BooleanField(default=False, help_text='True if the PDF has been anonymized.')),
|
|
1468
|
+
('file', models.FileField(upload_to='raw_pdfs', validators=[django.core.validators.FileExtensionValidator(allowed_extensions=['pdf'])])),
|
|
1469
|
+
('anonymized_file', models.FileField(blank=True, null=True, upload_to='raw_pdfs', validators=[django.core.validators.FileExtensionValidator(allowed_extensions=['pdf'])])),
|
|
1470
|
+
('state_report_processing_required', models.BooleanField(default=True)),
|
|
1471
|
+
('state_report_processed', models.BooleanField(default=False)),
|
|
1472
|
+
('raw_meta', models.JSONField(blank=True, null=True)),
|
|
1473
|
+
('anonymized_text', models.TextField(blank=True, null=True)),
|
|
1474
|
+
('anonym_examination_report', models.OneToOneField(blank=True, null=True, on_delete=django.db.models.deletion.SET_NULL, related_name='raw_pdf_file', to='endoreg_db.anonymexaminationreport')),
|
|
1475
|
+
('center', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.center')),
|
|
1476
|
+
('examination', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.SET_NULL, related_name='raw_pdf_files', to='endoreg_db.patientexamination')),
|
|
1477
|
+
('examiner', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.examiner')),
|
|
1478
|
+
('patient', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.SET_NULL, related_name='raw_pdf_files', to='endoreg_db.patient')),
|
|
1479
|
+
('pdf_type', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.pdftype')),
|
|
1480
|
+
('state', models.OneToOneField(blank=True, null=True, on_delete=django.db.models.deletion.SET_NULL, related_name='raw_pdf_file', to='endoreg_db.rawpdfstate')),
|
|
1481
|
+
('sensitive_meta', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.SET_NULL, related_name='raw_pdf_files', to='endoreg_db.sensitivemeta')),
|
|
1482
|
+
],
|
|
1483
|
+
),
|
|
1484
|
+
migrations.CreateModel(
|
|
1485
|
+
name='AnonymHistologyReport',
|
|
1486
|
+
fields=[
|
|
1487
|
+
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1488
|
+
('meta', models.JSONField(blank=True, null=True)),
|
|
1489
|
+
('text', models.TextField(blank=True, null=True)),
|
|
1490
|
+
('date', models.DateField(blank=True, null=True)),
|
|
1491
|
+
('time', models.TimeField(blank=True, null=True)),
|
|
1492
|
+
('file', models.FileField(blank=True, null=True, upload_to=pathlib.PurePosixPath('pdfs'))),
|
|
1493
|
+
('center', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.center')),
|
|
1494
|
+
('type', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.documenttype')),
|
|
1495
|
+
('examiners', models.ManyToManyField(blank=True, to='endoreg_db.examiner')),
|
|
1496
|
+
('patient', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.DO_NOTHING, to='endoreg_db.patient')),
|
|
1497
|
+
('patient_examination', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.patientexamination')),
|
|
1498
|
+
('sensitive_meta', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.sensitivemeta')),
|
|
1242
1499
|
],
|
|
1243
1500
|
options={
|
|
1244
1501
|
'abstract': False,
|
|
1245
|
-
'unique_together': {('model_meta', 'video')},
|
|
1246
1502
|
},
|
|
1247
1503
|
),
|
|
1248
1504
|
migrations.AddField(
|
|
1249
|
-
model_name='
|
|
1250
|
-
name='
|
|
1251
|
-
field=models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.
|
|
1505
|
+
model_name='anonymexaminationreport',
|
|
1506
|
+
name='sensitive_meta',
|
|
1507
|
+
field=models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.sensitivemeta'),
|
|
1252
1508
|
),
|
|
1253
1509
|
migrations.CreateModel(
|
|
1254
|
-
name='
|
|
1510
|
+
name='SensitiveMetaState',
|
|
1255
1511
|
fields=[
|
|
1256
1512
|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1257
|
-
('
|
|
1258
|
-
('
|
|
1259
|
-
('
|
|
1260
|
-
('
|
|
1261
|
-
('
|
|
1262
|
-
('video', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.legacyvideo')),
|
|
1513
|
+
('created_at', models.DateTimeField(auto_now_add=True)),
|
|
1514
|
+
('updated_at', models.DateTimeField(auto_now=True)),
|
|
1515
|
+
('dob_verified', models.BooleanField(default=False)),
|
|
1516
|
+
('names_verified', models.BooleanField(default=False)),
|
|
1517
|
+
('origin', models.OneToOneField(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='state', to='endoreg_db.sensitivemeta')),
|
|
1263
1518
|
],
|
|
1264
1519
|
options={
|
|
1265
|
-
'
|
|
1520
|
+
'verbose_name': 'Sensitive Meta State',
|
|
1521
|
+
'verbose_name_plural': 'Sensitive Meta States',
|
|
1266
1522
|
},
|
|
1267
1523
|
),
|
|
1268
1524
|
migrations.CreateModel(
|
|
1269
|
-
name='
|
|
1525
|
+
name='Shift',
|
|
1270
1526
|
fields=[
|
|
1271
1527
|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1272
|
-
('
|
|
1273
|
-
('
|
|
1274
|
-
('
|
|
1275
|
-
('
|
|
1528
|
+
('name', models.CharField(max_length=255, unique=True)),
|
|
1529
|
+
('description', models.TextField(blank=True, null=True)),
|
|
1530
|
+
('is_active', models.BooleanField(default=True)),
|
|
1531
|
+
('required_qualifications', models.ManyToManyField(related_name='shifts', to='endoreg_db.qualification')),
|
|
1532
|
+
('shift_types', models.ManyToManyField(related_name='shifts', to='endoreg_db.shifttype')),
|
|
1276
1533
|
],
|
|
1277
1534
|
),
|
|
1278
1535
|
migrations.CreateModel(
|
|
1279
|
-
name='
|
|
1536
|
+
name='CenterShift',
|
|
1280
1537
|
fields=[
|
|
1281
1538
|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1282
|
-
('
|
|
1283
|
-
('
|
|
1284
|
-
('
|
|
1285
|
-
('
|
|
1286
|
-
('
|
|
1287
|
-
('
|
|
1288
|
-
('
|
|
1289
|
-
('
|
|
1290
|
-
('label', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.label')),
|
|
1539
|
+
('name', models.CharField(max_length=255, unique=True)),
|
|
1540
|
+
('description', models.TextField(blank=True, null=True)),
|
|
1541
|
+
('start_time', models.TimeField()),
|
|
1542
|
+
('end_time', models.TimeField()),
|
|
1543
|
+
('estimated_presence_fraction', models.DecimalField(decimal_places=4, default=0.0, max_digits=5)),
|
|
1544
|
+
('center', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='center_shifts', to='endoreg_db.center')),
|
|
1545
|
+
('scheduled_days', models.ManyToManyField(related_name='center_shifts', to='endoreg_db.scheduleddays')),
|
|
1546
|
+
('shift', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='center_shifts', to='endoreg_db.shift')),
|
|
1291
1547
|
],
|
|
1292
|
-
options={
|
|
1293
|
-
'abstract': False,
|
|
1294
|
-
},
|
|
1295
1548
|
),
|
|
1296
|
-
migrations.
|
|
1297
|
-
|
|
1298
|
-
|
|
1299
|
-
|
|
1300
|
-
|
|
1301
|
-
|
|
1302
|
-
|
|
1303
|
-
|
|
1304
|
-
|
|
1549
|
+
migrations.CreateModel(
|
|
1550
|
+
name='RequirementSet',
|
|
1551
|
+
fields=[
|
|
1552
|
+
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1553
|
+
('name', models.CharField(max_length=100, unique=True)),
|
|
1554
|
+
('description', models.TextField(blank=True, null=True)),
|
|
1555
|
+
('information_sources', models.ManyToManyField(blank=True, related_name='requirement_sets', to='endoreg_db.informationsource')),
|
|
1556
|
+
('links_to_sets', models.ManyToManyField(blank=True, related_name='links_from_sets', to='endoreg_db.requirementset')),
|
|
1557
|
+
('reqset_exam_links', models.ManyToManyField(blank=True, related_name='requirement_set', to='endoreg_db.examinationrequirementset')),
|
|
1558
|
+
('requirements', models.ManyToManyField(blank=True, related_name='requirement_sets', to='endoreg_db.requirement')),
|
|
1559
|
+
('requirement_set_type', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='requirement_sets', to='endoreg_db.requirementsettype')),
|
|
1560
|
+
('tags', models.ManyToManyField(blank=True, related_name='requirement_sets', to='endoreg_db.tag')),
|
|
1561
|
+
],
|
|
1305
1562
|
),
|
|
1306
|
-
migrations.
|
|
1307
|
-
|
|
1308
|
-
|
|
1309
|
-
|
|
1563
|
+
migrations.CreateModel(
|
|
1564
|
+
name='TransportRoute',
|
|
1565
|
+
fields=[
|
|
1566
|
+
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1567
|
+
('distance', models.FloatField()),
|
|
1568
|
+
('name', models.CharField(max_length=255)),
|
|
1569
|
+
('emission_factor', models.ForeignKey(null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.emissionfactor')),
|
|
1570
|
+
('unit', models.ForeignKey(null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.unit')),
|
|
1571
|
+
],
|
|
1310
1572
|
),
|
|
1311
1573
|
migrations.AddField(
|
|
1312
|
-
model_name='
|
|
1313
|
-
name='
|
|
1314
|
-
field=models.ForeignKey(
|
|
1574
|
+
model_name='product',
|
|
1575
|
+
name='transport_route',
|
|
1576
|
+
field=models.ForeignKey(null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.transportroute'),
|
|
1315
1577
|
),
|
|
1316
1578
|
migrations.CreateModel(
|
|
1317
|
-
name='
|
|
1579
|
+
name='ProductWeight',
|
|
1318
1580
|
fields=[
|
|
1319
1581
|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1320
|
-
('
|
|
1321
|
-
('
|
|
1322
|
-
('
|
|
1323
|
-
('
|
|
1324
|
-
('
|
|
1325
|
-
('
|
|
1582
|
+
('name', models.CharField(max_length=255, null=True)),
|
|
1583
|
+
('measured', models.FloatField(null=True)),
|
|
1584
|
+
('verified', models.FloatField(null=True)),
|
|
1585
|
+
('manufacturer', models.FloatField(null=True)),
|
|
1586
|
+
('product', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.product')),
|
|
1587
|
+
('unit', models.ForeignKey(null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.unit')),
|
|
1326
1588
|
],
|
|
1327
|
-
options={
|
|
1328
|
-
'abstract': False,
|
|
1329
|
-
},
|
|
1330
|
-
),
|
|
1331
|
-
migrations.AddField(
|
|
1332
|
-
model_name='label',
|
|
1333
|
-
name='label_type',
|
|
1334
|
-
field=models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='labels', to='endoreg_db.labeltype'),
|
|
1335
1589
|
),
|
|
1336
1590
|
migrations.CreateModel(
|
|
1337
|
-
name='
|
|
1591
|
+
name='ProductMaterial',
|
|
1338
1592
|
fields=[
|
|
1339
1593
|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1340
|
-
('
|
|
1341
|
-
('
|
|
1342
|
-
('
|
|
1343
|
-
('
|
|
1344
|
-
('
|
|
1345
|
-
('legacy_frame', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='image_classification_predictions', to='endoreg_db.legacyframe')),
|
|
1346
|
-
('legacy_image', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='image_classification_predictions', to='endoreg_db.legacyimage')),
|
|
1347
|
-
('model_meta', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='image_classification_predictions', to='endoreg_db.modelmeta')),
|
|
1594
|
+
('component', models.CharField(max_length=255)),
|
|
1595
|
+
('quantity', models.FloatField()),
|
|
1596
|
+
('material', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='material_product_materials', to='endoreg_db.material')),
|
|
1597
|
+
('product', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='product_product_materials', to='endoreg_db.product')),
|
|
1598
|
+
('unit', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='unit_product_materials', to='endoreg_db.unit')),
|
|
1348
1599
|
],
|
|
1349
1600
|
),
|
|
1350
1601
|
migrations.CreateModel(
|
|
1351
|
-
name='
|
|
1602
|
+
name='PatientLabValue',
|
|
1352
1603
|
fields=[
|
|
1353
1604
|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1354
|
-
('value', models.
|
|
1355
|
-
('
|
|
1356
|
-
('
|
|
1357
|
-
('
|
|
1358
|
-
('
|
|
1359
|
-
('
|
|
1360
|
-
('
|
|
1361
|
-
('
|
|
1605
|
+
('value', models.FloatField(blank=True, null=True)),
|
|
1606
|
+
('value_str', models.CharField(blank=True, max_length=255, null=True)),
|
|
1607
|
+
('datetime', models.DateTimeField(auto_now_add=True)),
|
|
1608
|
+
('normal_range', models.JSONField(default=dict)),
|
|
1609
|
+
('lab_value', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.labvalue')),
|
|
1610
|
+
('patient', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='lab_values', to='endoreg_db.patient')),
|
|
1611
|
+
('sample', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='values', to='endoreg_db.patientlabsample')),
|
|
1612
|
+
('unit', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.unit')),
|
|
1362
1613
|
],
|
|
1363
1614
|
),
|
|
1364
1615
|
migrations.AddField(
|
|
1365
|
-
model_name='
|
|
1366
|
-
name='
|
|
1367
|
-
field=models.ForeignKey(on_delete=django.db.models.deletion.CASCADE,
|
|
1616
|
+
model_name='medication',
|
|
1617
|
+
name='default_unit',
|
|
1618
|
+
field=models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.unit'),
|
|
1368
1619
|
),
|
|
1369
1620
|
migrations.AddField(
|
|
1370
|
-
model_name='
|
|
1371
|
-
name='
|
|
1372
|
-
field=models.ForeignKey(null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.
|
|
1621
|
+
model_name='emissionfactor',
|
|
1622
|
+
name='unit',
|
|
1623
|
+
field=models.ForeignKey(null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.unit'),
|
|
1373
1624
|
),
|
|
1374
1625
|
migrations.CreateModel(
|
|
1375
|
-
name='
|
|
1626
|
+
name='CenterResource',
|
|
1376
1627
|
fields=[
|
|
1377
1628
|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1378
|
-
('name', models.CharField(max_length=
|
|
1379
|
-
('
|
|
1380
|
-
('
|
|
1381
|
-
('
|
|
1629
|
+
('name', models.CharField(max_length=255, null=True)),
|
|
1630
|
+
('quantity', models.FloatField()),
|
|
1631
|
+
('year', models.IntegerField()),
|
|
1632
|
+
('center', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='center_resources', to='endoreg_db.center')),
|
|
1633
|
+
('transport_emission_factor', models.ForeignKey(null=True, on_delete=django.db.models.deletion.SET_NULL, related_name='center_resource_transport_emission_factor', to='endoreg_db.emissionfactor')),
|
|
1634
|
+
('use_emission_factor', models.ForeignKey(null=True, on_delete=django.db.models.deletion.SET_NULL, related_name='center_resource_use_emission_factor', to='endoreg_db.emissionfactor')),
|
|
1635
|
+
('resource', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.resource')),
|
|
1636
|
+
('unit', models.ForeignKey(null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.unit')),
|
|
1637
|
+
],
|
|
1638
|
+
),
|
|
1639
|
+
migrations.CreateModel(
|
|
1640
|
+
name='UploadJob',
|
|
1641
|
+
fields=[
|
|
1642
|
+
('id', models.UUIDField(default=uuid.uuid4, editable=False, help_text='Unique identifier for the upload job', primary_key=True, serialize=False)),
|
|
1643
|
+
('file', models.FileField(help_text='Uploaded file (PDF or video)', upload_to='uploads/%Y/%m/%d/')),
|
|
1644
|
+
('status', models.CharField(choices=[('pending', 'Pending'), ('processing', 'Processing'), ('anonymized', 'Anonymized'), ('error', 'Error')], default='pending', help_text='Current processing status of the upload', max_length=20)),
|
|
1645
|
+
('content_type', models.CharField(blank=True, help_text='MIME type of the uploaded file', max_length=100)),
|
|
1646
|
+
('error_detail', models.TextField(blank=True, help_text='Error message if processing failed')),
|
|
1647
|
+
('created_at', models.DateTimeField(auto_now_add=True, help_text='When the upload job was created')),
|
|
1648
|
+
('updated_at', models.DateTimeField(auto_now=True, help_text='When the upload job was last updated')),
|
|
1649
|
+
('sensitive_meta', models.ForeignKey(blank=True, help_text='Link to the created SensitiveMeta record after processing', null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.sensitivemeta')),
|
|
1382
1650
|
],
|
|
1383
1651
|
options={
|
|
1384
|
-
'verbose_name': '
|
|
1385
|
-
'verbose_name_plural': '
|
|
1386
|
-
'ordering': ['
|
|
1652
|
+
'verbose_name': 'Upload Job',
|
|
1653
|
+
'verbose_name_plural': 'Upload Jobs',
|
|
1654
|
+
'ordering': ['-created_at'],
|
|
1387
1655
|
},
|
|
1388
1656
|
),
|
|
1389
1657
|
migrations.CreateModel(
|
|
1390
|
-
name='
|
|
1658
|
+
name='VideoFile',
|
|
1391
1659
|
fields=[
|
|
1392
1660
|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1393
|
-
('
|
|
1394
|
-
('
|
|
1395
|
-
('
|
|
1396
|
-
('
|
|
1397
|
-
('
|
|
1398
|
-
('
|
|
1661
|
+
('uuid', models.UUIDField(default=uuid.uuid4, editable=False, unique=True)),
|
|
1662
|
+
('raw_file', models.FileField(blank=True, null=True, upload_to='videos', validators=[django.core.validators.FileExtensionValidator(allowed_extensions=['mp4'])])),
|
|
1663
|
+
('processed_file', models.FileField(blank=True, null=True, upload_to='videos', validators=[django.core.validators.FileExtensionValidator(allowed_extensions=['mp4'])])),
|
|
1664
|
+
('video_hash', models.CharField(help_text='Hash of the raw video file.', max_length=255, unique=True)),
|
|
1665
|
+
('processed_video_hash', models.CharField(blank=True, help_text='Hash of the processed video file, unique if not null.', max_length=255, null=True, unique=True)),
|
|
1666
|
+
('original_file_name', models.CharField(blank=True, max_length=255, null=True)),
|
|
1667
|
+
('uploaded_at', models.DateTimeField(auto_now_add=True)),
|
|
1668
|
+
('frame_dir', models.CharField(blank=True, help_text='Path to frames extracted from the raw video.', max_length=512)),
|
|
1669
|
+
('fps', models.FloatField(blank=True, null=True)),
|
|
1670
|
+
('duration', models.FloatField(blank=True, null=True)),
|
|
1671
|
+
('frame_count', models.IntegerField(blank=True, null=True)),
|
|
1672
|
+
('width', models.IntegerField(blank=True, null=True)),
|
|
1673
|
+
('height', models.IntegerField(blank=True, null=True)),
|
|
1674
|
+
('suffix', models.CharField(blank=True, max_length=10, null=True)),
|
|
1675
|
+
('sequences', models.JSONField(blank=True, default=dict, help_text='AI prediction sequences based on raw frames.')),
|
|
1676
|
+
('date', models.DateField(blank=True, null=True)),
|
|
1677
|
+
('meta', models.JSONField(blank=True, null=True)),
|
|
1678
|
+
('date_created', models.DateTimeField(auto_now_add=True)),
|
|
1679
|
+
('date_modified', models.DateTimeField(auto_now=True)),
|
|
1680
|
+
('ai_model_meta', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.modelmeta')),
|
|
1681
|
+
('center', models.ForeignKey(on_delete=django.db.models.deletion.PROTECT, to='endoreg_db.center')),
|
|
1682
|
+
('examination', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.SET_NULL, related_name='video_files', to='endoreg_db.patientexamination')),
|
|
1683
|
+
('patient', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.SET_NULL, related_name='video_files', to='endoreg_db.patient')),
|
|
1684
|
+
('processor', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.PROTECT, to='endoreg_db.endoscopyprocessor')),
|
|
1685
|
+
('sensitive_meta', models.OneToOneField(blank=True, null=True, on_delete=django.db.models.deletion.SET_NULL, related_name='video_file', to='endoreg_db.sensitivemeta')),
|
|
1686
|
+
('import_meta', models.OneToOneField(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.videoimportmeta')),
|
|
1399
1687
|
],
|
|
1400
|
-
options={
|
|
1401
|
-
'verbose_name': 'Examination Time',
|
|
1402
|
-
'verbose_name_plural': 'Examination Times',
|
|
1403
|
-
'ordering': ['name'],
|
|
1404
|
-
},
|
|
1405
1688
|
),
|
|
1406
1689
|
migrations.AddField(
|
|
1407
|
-
model_name='
|
|
1408
|
-
name='
|
|
1409
|
-
field=models.
|
|
1690
|
+
model_name='patientexamination',
|
|
1691
|
+
name='video',
|
|
1692
|
+
field=models.OneToOneField(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='patient_examination', to='endoreg_db.videofile'),
|
|
1410
1693
|
),
|
|
1411
1694
|
migrations.AddField(
|
|
1412
|
-
model_name='
|
|
1413
|
-
name='
|
|
1414
|
-
field=models.ForeignKey(
|
|
1695
|
+
model_name='labelvideosegment',
|
|
1696
|
+
name='video_file',
|
|
1697
|
+
field=models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='label_video_segments', to='endoreg_db.videofile'),
|
|
1415
1698
|
),
|
|
1416
1699
|
migrations.CreateModel(
|
|
1417
|
-
name='
|
|
1700
|
+
name='Frame',
|
|
1418
1701
|
fields=[
|
|
1419
1702
|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1420
|
-
('
|
|
1421
|
-
('
|
|
1422
|
-
('
|
|
1423
|
-
('
|
|
1424
|
-
('
|
|
1425
|
-
('waste', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.waste')),
|
|
1703
|
+
('frame_number', models.PositiveIntegerField()),
|
|
1704
|
+
('relative_path', models.CharField(max_length=512)),
|
|
1705
|
+
('timestamp', models.FloatField(blank=True, null=True)),
|
|
1706
|
+
('is_extracted', models.BooleanField(default=False)),
|
|
1707
|
+
('video', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='frames', to='endoreg_db.videofile')),
|
|
1426
1708
|
],
|
|
1709
|
+
options={
|
|
1710
|
+
'ordering': ['video', 'frame_number'],
|
|
1711
|
+
},
|
|
1427
1712
|
),
|
|
1428
1713
|
migrations.CreateModel(
|
|
1429
|
-
name='
|
|
1714
|
+
name='VideoMeta',
|
|
1430
1715
|
fields=[
|
|
1431
1716
|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1432
|
-
('name', models.CharField(max_length=255, null=True)),
|
|
1433
|
-
('name_de', models.CharField(max_length=255, null=True)),
|
|
1434
|
-
('name_en', models.CharField(max_length=255, null=True)),
|
|
1435
|
-
('quantity', models.FloatField()),
|
|
1436
|
-
('year', models.IntegerField()),
|
|
1437
1717
|
('center', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.center')),
|
|
1438
|
-
('
|
|
1439
|
-
('
|
|
1440
|
-
('
|
|
1441
|
-
('
|
|
1718
|
+
('endoscope', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.endoscope')),
|
|
1719
|
+
('ffmpeg_meta', models.OneToOneField(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.ffmpegmeta')),
|
|
1720
|
+
('import_meta', models.OneToOneField(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.videoimportmeta')),
|
|
1721
|
+
('processor', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.endoscopyprocessor')),
|
|
1442
1722
|
],
|
|
1443
1723
|
),
|
|
1724
|
+
migrations.AddField(
|
|
1725
|
+
model_name='videofile',
|
|
1726
|
+
name='video_meta',
|
|
1727
|
+
field=models.OneToOneField(blank=True, null=True, on_delete=django.db.models.deletion.SET_NULL, related_name='video_file', to='endoreg_db.videometa'),
|
|
1728
|
+
),
|
|
1444
1729
|
migrations.CreateModel(
|
|
1445
|
-
name='
|
|
1730
|
+
name='VideoPredictionMeta',
|
|
1446
1731
|
fields=[
|
|
1447
1732
|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1448
|
-
('
|
|
1449
|
-
('
|
|
1450
|
-
('
|
|
1733
|
+
('date_created', models.DateTimeField(auto_now_add=True)),
|
|
1734
|
+
('date_modified', models.DateTimeField(auto_now=True)),
|
|
1735
|
+
('prediction_array', models.BinaryField(blank=True, null=True)),
|
|
1736
|
+
('model_meta', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.modelmeta')),
|
|
1737
|
+
('video_file', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='video_prediction_meta', to='endoreg_db.videofile')),
|
|
1451
1738
|
],
|
|
1452
1739
|
),
|
|
1453
1740
|
migrations.AddField(
|
|
1454
|
-
model_name='
|
|
1455
|
-
name='
|
|
1456
|
-
field=models.
|
|
1457
|
-
),
|
|
1458
|
-
migrations.AddField(
|
|
1459
|
-
model_name='center',
|
|
1460
|
-
name='last_names',
|
|
1461
|
-
field=models.ManyToManyField(related_name='centers', to='endoreg_db.lastname'),
|
|
1741
|
+
model_name='labelvideosegment',
|
|
1742
|
+
name='prediction_meta',
|
|
1743
|
+
field=models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.SET_NULL, related_name='label_video_segments', to='endoreg_db.videopredictionmeta'),
|
|
1462
1744
|
),
|
|
1463
1745
|
migrations.CreateModel(
|
|
1464
|
-
name='
|
|
1746
|
+
name='VideoSegmentationAnnotation',
|
|
1465
1747
|
fields=[
|
|
1466
1748
|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1467
|
-
('
|
|
1468
|
-
('
|
|
1469
|
-
('
|
|
1470
|
-
('
|
|
1471
|
-
('
|
|
1472
|
-
('parent_field', models.CharField(blank=True, max_length=255, null=True)),
|
|
1473
|
-
('target_field', models.CharField(blank=True, max_length=255, null=True)),
|
|
1474
|
-
('target_model', models.CharField(blank=True, max_length=255, null=True)),
|
|
1475
|
-
('rule_values', models.JSONField(blank=True, null=True)),
|
|
1476
|
-
('extra_parameters', models.JSONField(blank=True, null=True)),
|
|
1477
|
-
('chained_rules', models.ManyToManyField(related_name='calling_rules', to='endoreg_db.casetemplaterule')),
|
|
1478
|
-
('date_value_distribution', models.ForeignKey(null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.datevaluedistribution')),
|
|
1479
|
-
('multiple_categorical_value_distribution', models.ForeignKey(null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.multiplecategoricalvaluedistribution')),
|
|
1480
|
-
('numerical_value_distribution', models.ForeignKey(null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.numericvaluedistribution')),
|
|
1481
|
-
('rule_type', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.casetemplateruletype')),
|
|
1482
|
-
('single_categorical_value_distribution', models.ForeignKey(null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.singlecategoricalvaluedistribution')),
|
|
1483
|
-
('value_type', models.ForeignKey(null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.casetemplaterulevaluetype')),
|
|
1749
|
+
('start_time', models.FloatField()),
|
|
1750
|
+
('stop_time', models.FloatField()),
|
|
1751
|
+
('is_true', models.BooleanField(default=True)),
|
|
1752
|
+
('video_file', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='video_segmentation_annotations', to='endoreg_db.videofile')),
|
|
1753
|
+
('label', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.videosegmentationlabel')),
|
|
1484
1754
|
],
|
|
1485
1755
|
),
|
|
1486
1756
|
migrations.CreateModel(
|
|
1487
|
-
name='
|
|
1757
|
+
name='VideoSegmentationLabelSet',
|
|
1488
1758
|
fields=[
|
|
1489
1759
|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1490
|
-
('name', models.CharField(max_length=255
|
|
1760
|
+
('name', models.CharField(max_length=255)),
|
|
1491
1761
|
('description', models.TextField(blank=True, null=True)),
|
|
1492
|
-
('
|
|
1493
|
-
('secondary_rules', models.ManyToManyField(related_name='secondary_rules', to='endoreg_db.casetemplaterule')),
|
|
1494
|
-
('template_type', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='case_templates', to='endoreg_db.casetemplatetype')),
|
|
1762
|
+
('labels', models.ManyToManyField(related_name='labelsets', to='endoreg_db.videosegmentationlabel')),
|
|
1495
1763
|
],
|
|
1496
1764
|
),
|
|
1765
|
+
migrations.AddField(
|
|
1766
|
+
model_name='aimodel',
|
|
1767
|
+
name='video_segmentation_labelset',
|
|
1768
|
+
field=models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='ai_models', to='endoreg_db.videosegmentationlabelset'),
|
|
1769
|
+
),
|
|
1770
|
+
migrations.AddField(
|
|
1771
|
+
model_name='videofile',
|
|
1772
|
+
name='state',
|
|
1773
|
+
field=models.OneToOneField(blank=True, null=True, on_delete=django.db.models.deletion.SET_NULL, related_name='video_file', to='endoreg_db.videostate'),
|
|
1774
|
+
),
|
|
1497
1775
|
migrations.CreateModel(
|
|
1498
|
-
name='
|
|
1776
|
+
name='CenterWaste',
|
|
1499
1777
|
fields=[
|
|
1500
1778
|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1501
|
-
('
|
|
1502
|
-
('
|
|
1503
|
-
('
|
|
1504
|
-
('
|
|
1505
|
-
('
|
|
1506
|
-
('
|
|
1507
|
-
('image_type', models.CharField(default='frame', max_length=255)),
|
|
1508
|
-
('frame', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='binary_classification_annotation_tasks', to='endoreg_db.frame')),
|
|
1509
|
-
('label', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.label')),
|
|
1779
|
+
('year', models.IntegerField()),
|
|
1780
|
+
('quantity', models.FloatField()),
|
|
1781
|
+
('center', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='center_wastes', to='endoreg_db.center')),
|
|
1782
|
+
('emission_factor', models.ForeignKey(null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.emissionfactor')),
|
|
1783
|
+
('unit', models.ForeignKey(null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.unit')),
|
|
1784
|
+
('waste', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.waste')),
|
|
1510
1785
|
],
|
|
1511
|
-
options={
|
|
1512
|
-
'abstract': False,
|
|
1513
|
-
},
|
|
1514
1786
|
),
|
|
1515
1787
|
migrations.CreateModel(
|
|
1516
|
-
name='
|
|
1788
|
+
name='ImageClassificationAnnotation',
|
|
1517
1789
|
fields=[
|
|
1518
1790
|
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1519
|
-
('
|
|
1520
|
-
('
|
|
1521
|
-
('
|
|
1522
|
-
('
|
|
1523
|
-
('
|
|
1524
|
-
('
|
|
1525
|
-
('
|
|
1526
|
-
('
|
|
1527
|
-
('
|
|
1791
|
+
('value', models.BooleanField()),
|
|
1792
|
+
('float_value', models.FloatField(blank=True, null=True)),
|
|
1793
|
+
('annotator', models.CharField(blank=True, max_length=255, null=True)),
|
|
1794
|
+
('date_created', models.DateTimeField(auto_now_add=True)),
|
|
1795
|
+
('date_modified', models.DateTimeField(auto_now=True)),
|
|
1796
|
+
('frame', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='image_classification_annotations', to='endoreg_db.frame')),
|
|
1797
|
+
('information_source', models.ForeignKey(blank=True, default=None, null=True, on_delete=django.db.models.deletion.SET_NULL, related_name='image_classification_annotations', to='endoreg_db.informationsource')),
|
|
1798
|
+
('label', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='image_classification_annotations', to='endoreg_db.label')),
|
|
1799
|
+
('model_meta', models.ForeignKey(blank=True, default=None, null=True, on_delete=django.db.models.deletion.SET_NULL, related_name='image_classification_annotations', to='endoreg_db.modelmeta')),
|
|
1528
1800
|
],
|
|
1529
1801
|
options={
|
|
1530
|
-
'
|
|
1531
|
-
'verbose_name_plural': 'AGL Service Log Entries',
|
|
1802
|
+
'indexes': [models.Index(fields=['frame', 'label'], name='endoreg_db__frame_i_47f916_idx'), models.Index(fields=['frame'], name='endoreg_db__frame_i_92c75a_idx')],
|
|
1532
1803
|
},
|
|
1533
1804
|
),
|
|
1534
|
-
migrations.
|
|
1535
|
-
model_name='
|
|
1536
|
-
name='
|
|
1537
|
-
field=models.ManyToManyField(related_name='services', to='endoreg_db.networkdevice'),
|
|
1805
|
+
migrations.AddIndex(
|
|
1806
|
+
model_name='patientfinding',
|
|
1807
|
+
index=models.Index(fields=['patient_examination', 'finding'], name='endoreg_db__patient_54869f_idx'),
|
|
1538
1808
|
),
|
|
1539
|
-
migrations.
|
|
1540
|
-
|
|
1541
|
-
fields=[
|
|
1542
|
-
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
|
|
1543
|
-
('name', models.CharField(max_length=255, unique=True)),
|
|
1544
|
-
('model_meta', models.OneToOneField(blank=True, null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.modelmeta')),
|
|
1545
|
-
],
|
|
1809
|
+
migrations.AddIndex(
|
|
1810
|
+
model_name='patientfinding',
|
|
1811
|
+
index=models.Index(fields=['patient_examination', 'is_active'], name='endoreg_db__patient_9359f8_idx'),
|
|
1546
1812
|
),
|
|
1547
1813
|
migrations.AddIndex(
|
|
1548
|
-
model_name='
|
|
1549
|
-
index=models.Index(fields=['
|
|
1814
|
+
model_name='patientfinding',
|
|
1815
|
+
index=models.Index(fields=['created_at'], name='endoreg_db__created_b44d86_idx'),
|
|
1550
1816
|
),
|
|
1551
|
-
migrations.
|
|
1552
|
-
|
|
1553
|
-
|
|
1817
|
+
migrations.AddIndex(
|
|
1818
|
+
model_name='patientfinding',
|
|
1819
|
+
index=models.Index(fields=['finding', 'is_active'], name='endoreg_db__finding_2f036b_idx'),
|
|
1554
1820
|
),
|
|
1555
|
-
migrations.
|
|
1556
|
-
|
|
1557
|
-
|
|
1821
|
+
migrations.AddConstraint(
|
|
1822
|
+
model_name='patientfinding',
|
|
1823
|
+
constraint=models.UniqueConstraint(condition=models.Q(('is_active', True)), fields=('patient_examination', 'finding'), name='unique_active_finding_per_examination'),
|
|
1558
1824
|
),
|
|
1559
|
-
migrations.
|
|
1560
|
-
model_name='
|
|
1561
|
-
|
|
1825
|
+
migrations.AddConstraint(
|
|
1826
|
+
model_name='patientfinding',
|
|
1827
|
+
constraint=models.CheckConstraint(condition=models.Q(models.Q(('deactivated_at__isnull', True), ('deactivated_by__isnull', True)), models.Q(('deactivated_at__isnull', False), ('deactivated_by__isnull', False), ('is_active', False)), _connector='OR'), name='deactivation_fields_consistency'),
|
|
1562
1828
|
),
|
|
1563
1829
|
migrations.AlterUniqueTogether(
|
|
1564
1830
|
name='frame',
|
|
1565
1831
|
unique_together={('video', 'frame_number')},
|
|
1566
1832
|
),
|
|
1833
|
+
migrations.AddIndex(
|
|
1834
|
+
model_name='videopredictionmeta',
|
|
1835
|
+
index=models.Index(fields=['model_meta', 'video_file'], name='endoreg_db__model_m_208dee_idx'),
|
|
1836
|
+
),
|
|
1837
|
+
migrations.AddConstraint(
|
|
1838
|
+
model_name='videopredictionmeta',
|
|
1839
|
+
constraint=models.UniqueConstraint(fields=('model_meta', 'video_file'), name='unique_prediction_per_video_model'),
|
|
1840
|
+
),
|
|
1841
|
+
migrations.AddIndex(
|
|
1842
|
+
model_name='labelvideosegment',
|
|
1843
|
+
index=models.Index(fields=['video_file', 'label', 'start_frame_number'], name='endoreg_db__video_f_fa9326_idx'),
|
|
1844
|
+
),
|
|
1845
|
+
migrations.AddIndex(
|
|
1846
|
+
model_name='labelvideosegment',
|
|
1847
|
+
index=models.Index(fields=['prediction_meta', 'label'], name='endoreg_db__predict_2bfba4_idx'),
|
|
1848
|
+
),
|
|
1849
|
+
migrations.AddConstraint(
|
|
1850
|
+
model_name='labelvideosegment',
|
|
1851
|
+
constraint=models.CheckConstraint(condition=models.Q(('start_frame_number__lt', models.F('end_frame_number'))), name='segment_start_lt_end'),
|
|
1852
|
+
),
|
|
1853
|
+
migrations.AddConstraint(
|
|
1854
|
+
model_name='videosegmentationannotation',
|
|
1855
|
+
constraint=models.CheckConstraint(condition=models.Q(('start_time__lt', models.F('stop_time'))), name='start_time_less_than_stop_time'),
|
|
1856
|
+
),
|
|
1567
1857
|
]
|