eegdash 0.0.1__py3-none-any.whl

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  1. eegdash/SignalStore/__init__.py +0 -0
  2. eegdash/SignalStore/signalstore/__init__.py +3 -0
  3. eegdash/SignalStore/signalstore/adapters/read_adapters/abstract_read_adapter.py +13 -0
  4. eegdash/SignalStore/signalstore/adapters/read_adapters/domain_modeling/schema_read_adapter.py +16 -0
  5. eegdash/SignalStore/signalstore/adapters/read_adapters/domain_modeling/vocabulary_read_adapter.py +19 -0
  6. eegdash/SignalStore/signalstore/adapters/read_adapters/handmade_records/excel_study_organizer_read_adapter.py +114 -0
  7. eegdash/SignalStore/signalstore/adapters/read_adapters/recording_acquisitions/axona/axona_read_adapter.py +912 -0
  8. eegdash/SignalStore/signalstore/adapters/read_adapters/recording_acquisitions/intan/ReadIntanSpikeFile.py +140 -0
  9. eegdash/SignalStore/signalstore/adapters/read_adapters/recording_acquisitions/intan/intan_read_adapter.py +29 -0
  10. eegdash/SignalStore/signalstore/adapters/read_adapters/recording_acquisitions/intan/load_intan_rhd_format/intanutil/__init__.py +0 -0
  11. eegdash/SignalStore/signalstore/adapters/read_adapters/recording_acquisitions/intan/load_intan_rhd_format/intanutil/data_to_result.py +62 -0
  12. eegdash/SignalStore/signalstore/adapters/read_adapters/recording_acquisitions/intan/load_intan_rhd_format/intanutil/get_bytes_per_data_block.py +36 -0
  13. eegdash/SignalStore/signalstore/adapters/read_adapters/recording_acquisitions/intan/load_intan_rhd_format/intanutil/notch_filter.py +50 -0
  14. eegdash/SignalStore/signalstore/adapters/read_adapters/recording_acquisitions/intan/load_intan_rhd_format/intanutil/qstring.py +41 -0
  15. eegdash/SignalStore/signalstore/adapters/read_adapters/recording_acquisitions/intan/load_intan_rhd_format/intanutil/read_header.py +135 -0
  16. eegdash/SignalStore/signalstore/adapters/read_adapters/recording_acquisitions/intan/load_intan_rhd_format/intanutil/read_one_data_block.py +45 -0
  17. eegdash/SignalStore/signalstore/adapters/read_adapters/recording_acquisitions/intan/load_intan_rhd_format/load_intan_rhd_format.py +204 -0
  18. eegdash/SignalStore/signalstore/adapters/read_adapters/recording_acquisitions/intan/load_intan_rhs_format/intanutil/__init__.py +0 -0
  19. eegdash/SignalStore/signalstore/adapters/read_adapters/recording_acquisitions/intan/load_intan_rhs_format/intanutil/data_to_result.py +60 -0
  20. eegdash/SignalStore/signalstore/adapters/read_adapters/recording_acquisitions/intan/load_intan_rhs_format/intanutil/get_bytes_per_data_block.py +37 -0
  21. eegdash/SignalStore/signalstore/adapters/read_adapters/recording_acquisitions/intan/load_intan_rhs_format/intanutil/notch_filter.py +50 -0
  22. eegdash/SignalStore/signalstore/adapters/read_adapters/recording_acquisitions/intan/load_intan_rhs_format/intanutil/qstring.py +41 -0
  23. eegdash/SignalStore/signalstore/adapters/read_adapters/recording_acquisitions/intan/load_intan_rhs_format/intanutil/read_header.py +153 -0
  24. eegdash/SignalStore/signalstore/adapters/read_adapters/recording_acquisitions/intan/load_intan_rhs_format/intanutil/read_one_data_block.py +47 -0
  25. eegdash/SignalStore/signalstore/adapters/read_adapters/recording_acquisitions/intan/load_intan_rhs_format/load_intan_rhs_format.py +213 -0
  26. eegdash/SignalStore/signalstore/adapters/read_adapters/recording_acquisitions/neurodata_without_borders/neurodata_without_borders_read_adapter.py +14 -0
  27. eegdash/SignalStore/signalstore/operations/__init__.py +4 -0
  28. eegdash/SignalStore/signalstore/operations/handler_executor.py +22 -0
  29. eegdash/SignalStore/signalstore/operations/handler_factory.py +41 -0
  30. eegdash/SignalStore/signalstore/operations/handlers/base_handler.py +44 -0
  31. eegdash/SignalStore/signalstore/operations/handlers/domain/property_model_handlers.py +79 -0
  32. eegdash/SignalStore/signalstore/operations/handlers/domain/schema_handlers.py +3 -0
  33. eegdash/SignalStore/signalstore/operations/helpers/abstract_helper.py +17 -0
  34. eegdash/SignalStore/signalstore/operations/helpers/neuroscikit_extractor.py +33 -0
  35. eegdash/SignalStore/signalstore/operations/helpers/neuroscikit_rawio.py +165 -0
  36. eegdash/SignalStore/signalstore/operations/helpers/spikeinterface_helper.py +100 -0
  37. eegdash/SignalStore/signalstore/operations/helpers/wrappers/neo_wrappers.py +21 -0
  38. eegdash/SignalStore/signalstore/operations/helpers/wrappers/nwb_wrappers.py +27 -0
  39. eegdash/SignalStore/signalstore/store/__init__.py +8 -0
  40. eegdash/SignalStore/signalstore/store/data_access_objects.py +1181 -0
  41. eegdash/SignalStore/signalstore/store/datafile_adapters.py +131 -0
  42. eegdash/SignalStore/signalstore/store/repositories.py +928 -0
  43. eegdash/SignalStore/signalstore/store/store_errors.py +68 -0
  44. eegdash/SignalStore/signalstore/store/unit_of_work.py +97 -0
  45. eegdash/SignalStore/signalstore/store/unit_of_work_provider.py +67 -0
  46. eegdash/SignalStore/signalstore/utilities/data_adapters/spike_interface_adapters/si_recording.py +1 -0
  47. eegdash/SignalStore/signalstore/utilities/data_adapters/spike_interface_adapters/si_sorter.py +1 -0
  48. eegdash/SignalStore/signalstore/utilities/testing/data_mocks.py +513 -0
  49. eegdash/SignalStore/signalstore/utilities/tools/dataarrays.py +49 -0
  50. eegdash/SignalStore/signalstore/utilities/tools/mongo_records.py +25 -0
  51. eegdash/SignalStore/signalstore/utilities/tools/operation_response.py +78 -0
  52. eegdash/SignalStore/signalstore/utilities/tools/purge_orchestration_response.py +21 -0
  53. eegdash/SignalStore/signalstore/utilities/tools/quantities.py +15 -0
  54. eegdash/SignalStore/signalstore/utilities/tools/strings.py +38 -0
  55. eegdash/SignalStore/signalstore/utilities/tools/time.py +17 -0
  56. eegdash/SignalStore/tests/conftest.py +799 -0
  57. eegdash/SignalStore/tests/data/valid_data/data_arrays/make_fake_data.py +59 -0
  58. eegdash/SignalStore/tests/unit/store/conftest.py +0 -0
  59. eegdash/SignalStore/tests/unit/store/test_data_access_objects.py +1235 -0
  60. eegdash/SignalStore/tests/unit/store/test_repositories.py +1309 -0
  61. eegdash/SignalStore/tests/unit/store/test_unit_of_work.py +7 -0
  62. eegdash/SignalStore/tests/unit/test_ci_cd.py +8 -0
  63. eegdash/__init__.py +1 -0
  64. eegdash/aws_ingest.py +29 -0
  65. eegdash/data_utils.py +213 -0
  66. eegdash/main.py +17 -0
  67. eegdash/signalstore_data_utils.py +280 -0
  68. eegdash-0.0.1.dist-info/LICENSE +20 -0
  69. eegdash-0.0.1.dist-info/METADATA +72 -0
  70. eegdash-0.0.1.dist-info/RECORD +72 -0
  71. eegdash-0.0.1.dist-info/WHEEL +5 -0
  72. eegdash-0.0.1.dist-info/top_level.txt +1 -0
@@ -0,0 +1,15 @@
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+ import pint
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+ import numpy as np
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+ import xarray as xr
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+
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+
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+
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+ registry = pint.UnitRegistry()
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+ pint.set_application_registry(registry)
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+
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+
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+ if __name__ == "__main__":
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+ registry = pint.UnitRegistry()
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+ pint.set_application_registry(registry)
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+
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+
@@ -0,0 +1,38 @@
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+ import re
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+
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+ def to_snake_case(s):
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+
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+ def preprocess_caps(s):
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+ """Preprocesses the string to make it easier to convert to snake case.
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+ Transforms sequnces of caps (acronyms, etc.) so that
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+ (1) if the sequence is at the end of the string, only the first letter is capitalized,
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+ (2) if the sequence is in the middle of the string, only the first and last letters are capitalized.
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+ Also replaces any dashes with underscores, then removes any non-alphanumeric characters remaining (except underscores).
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+ """
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+ # Convert any dashes to underscores
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+ s = s.replace('-', '_')
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+ # Remove non-alphanumeric characters, except underscores
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+ s = re.sub(r'[^a-zA-Z0-9_]', '', s)
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+ # Transform sequences of standard PascalCase / camelCase
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+ s = re.sub(r'([A-Z])([A-Z]+)(?=[A-Z][a-z])', lambda m: m.group(1) + m.group(2).lower(), s)
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+ s = re.sub(r'([A-Z]+)(?=[A-Z]|$)', lambda m: m.group(1).capitalize(), s)
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+ return s
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+
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+ def to_snake(s):
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+ """Converts a camel case string to snake case,
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+ assuming that the string has already been preprocessed."""
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+ return re.sub(r'(?<!^)(?=[A-Z])', '_', s).lower()
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+
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+ preprocessed = preprocess_caps(s)
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+
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+ snake = to_snake(preprocessed)
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+
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+ return re.sub(r'__+', '_', snake) # Remove any double underscores
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+
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+ def contains_regex_characters(pattern):
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+ # List of regex special characters that you want to check for
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+ # You can add more characters to this list if needed
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+ regex_special_chars = r".^$*+?{}[]\|()"
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+
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+ # If any special character is in the pattern, it's likely intended as a regex
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+ return any(char in pattern for char in regex_special_chars)
@@ -0,0 +1,17 @@
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+ from datetime import datetime, timezone, timedelta
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+
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+ def time_millis(time):
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+ # `timestamp()` returns seconds as a float, so we multiply by 1000 and trunc to int to get
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+ # millis.
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+ return int(time.timestamp() * 1000)
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+
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+ def timenow_millis(datetime_override):
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+ # `timestamp()` returns seconds as a float, so we multiply by 1000 and trunc to int to get
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+ # millis.
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+ return int(datetime_override.now().timestamp() * 1000)
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+
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+ def timeago_millis(time_ago: timedelta):
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+ # `total_seconds()` returns seconds as a float, so we multiply by 1000 and trunc to int to get
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+ # millis.
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+ return int(time_ago.total_seconds()) * 1000
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+