datastock 0.0.35__py3-none-any.whl → 0.0.37__py3-none-any.whl

datastock/_plot_as_mobile_lines.py

@@ -12,7 +12,8 @@ import matplotlib.colors as mcolors
 from . import _generic_check
 from . import _plot_text
 from . import _class1_compute
-from ._plot_as_array import _check_keyXYZ, _get_str_datadlab
+from ._plot_as_array import _check_keyXYZ
+from ._generic_utils_plot import _get_str_datadlab
 
 
 __all__ = ['plot_as_mobile_lines']
@@ -68,19 +69,20 @@ def plot_as_mobile_lines(
     inplace=None,
 ):
 
-
     # ------------
     #  check inputs
 
-    if bck:
-        inplace = False
-
     # check key, inplace flag and extract sub-collection
-    [keyX, keyY], inplace, coll2 = _generic_check._check_inplace(
-        coll=coll,
-        keys=[keyX, keyY],
-        inplace=inplace,
+    lk = [kk for kk in [keyX, keyY, key_time, key_chan] if kk is not None]
+    coll2, key = coll.extract(
+        lk,
+        inc_monot=False,
+        inc_vectors=False,
+        inc_allrefs=False,
+        return_keys=True,
     )
+    keyX = [kk for kk in key if kk not in [keyY, key_time, key_chan]][0]
+    keyY = [kk for kk in key if kk not in [keyX, key_time, key_chan]][0]
     ndim = coll2._ddata[keyX]['data'].ndim
 
     # --------------
@@ -434,9 +436,10 @@ def _plot_as_mobile_lines2d(
     labx = f"{keyX} ({coll.ddata[keyX]['units']})"
     laby = f"{keyY} ({coll.ddata[keyY]['units']})"
 
-    keych, chstr, datach, dch2, labch = _get_str_datadlab(
+    keych, chstr, dch2, labch = _get_str_datadlab(
         keyX=keych, nx=nch, islogX=islogch, coll=coll,
     )
+    datach = coll.ddata[keych]['data']
 
     # -----------------
     #  prepare slicing
@@ -664,12 +667,14 @@ def _plot_as_mobile_lines3d(
     labx = f"{keyX} ({coll.ddata[keyX]['units']})"
     laby = f"{keyY} ({coll.ddata[keyY]['units']})"
 
-    keyt, tstr, datat, dt2, labt = _get_str_datadlab(
+    keyt, tstr, dt2, labt = _get_str_datadlab(
         keyX=keyt, nx=nt, islogX=islogt, coll=coll,
     )
-    keych, chstr, datach, dch2, labch = _get_str_datadlab(
+    datat = coll.ddata[keyt]['data']
+    keych, chstr, dch2, labch = _get_str_datadlab(
         keyX=keych, nx=nch, islogX=islogch, coll=coll,
     )
+    datach = coll.ddata[keych]['data']
 
     # -----------
     # background
@@ -957,4 +962,4 @@ def _plot_as_mobile_lines3d(
             bstr_dict=bstr_dict,
         )
 
-    return coll, dax, dgroup
+    return coll, dax, dgroup

datastock/_plot_as_profile1d.py

@@ -12,7 +12,8 @@ import matplotlib.colors as mcolors
 from . import _generic_check
 from . import _plot_text
 from . import _class1_compute
-from ._plot_as_array import _check_keyXYZ, _get_str_datadlab
+from ._plot_as_array import _check_keyXYZ
+from ._generic_utils_plot import _get_str_datadlab
 
 
 __all__ = ['plot_as_profile1d']
@@ -47,12 +48,15 @@ def plot_as_profile1d(
     key=None,
     key_time=None,
     keyX=None,
+    dkeys=None,
     ind=None,
+    dscale=None,
+    dvminmax=None,
     vmin=None,
     vmax=None,
-    cmap=None,
     ymin=None,
     ymax=None,
+    cmap=None,
     aspect=None,
     nmax=None,
     color_dict=None,
@@ -71,19 +75,30 @@ def plot_as_profile1d(
     dleg=None,
     connect=None,
     inplace=None,
+    # unused
+    **kwdargs,
 ):
 
 
     # ------------
     #  check inputs
 
+    key = _generic_check._check_var(
+        key, 'key',
+        types=str,
+        allowed=list(coll.ddata.keys()),
+    )
+
     # check key, inplace flag and extract sub-collection
-    key, inplace, coll2 = _generic_check._check_inplace(
-        coll=coll,
-        keys=None if key is None else [key],
-        inplace=inplace,
+    lk = [kk for kk in [key, key_time, keyX] if kk is not None]
+    coll2, key = coll.extract(
+        lk,
+        inc_monot=False,
+        inc_vectors=False,
+        inc_allrefs=False,
+        return_keys=True,
     )
-    key = key[0]
+    key = [kk for kk in key if kk not in [key_time, keyX]][0]
     ndim = coll2._ddata[key]['data'].ndim
 
     # --------------
@@ -565,14 +580,16 @@ def _plot_as_profile1d(
     # ----------------------
     #  labels and data
 
-    key_time, tstr, datat, dt2, labt = _get_str_datadlab(
+    key_time, tstr, dt2, labt = _get_str_datadlab(
         keyX=key_time, nx=nt, islogX=islogtime, coll=coll,
     )
+    datat = coll.ddata[key_time]['data']
 
     # keyX can be 2d !!!
-    keyX, xstr, dataX, _, labX = _get_str_datadlab(
+    keyX, xstr, _, labX = _get_str_datadlab(
         keyX=keyX, nx=nx, islogX=None, coll=coll,
     )
+    dataX = coll.ddata[keyX]['data']
 
     # -----------------
     #  prepare slicing
@@ -954,6 +971,4 @@ def _plot_as_profile1d(
             bstr_dict=bstr_dict,
         )
 
-    return coll, dax, dgroup
-
-
+    return coll, dax, dgroup

datastock/_saveload.py

@@ -185,6 +185,8 @@ def load(
             dout[k0] = list(dflat[k0])
         elif typ == 'str':
             dout[k0] = str(dflat[k0])
+        elif typ == 'chararray':
+            dout[k0] = dflat[k0]
         elif typ in ['int']:
             dout[k0] = int(dflat[k0])
         elif typ.startswith('int') and typ[3:].isnumeric():

datastock/tests/test_01_DataStock.py

@@ -56,6 +56,8 @@ def _add_ref(st=None, nc=None, nx=None, lnt=None):
     # add references (i.e.: store size of each dimension under a unique key)
     st.add_ref(key='nc', size=nc)
     st.add_ref(key='nx', size=nx)
+    st.add_ref(key='nne', size=11)
+    st.add_ref(key='nTe', size=21)
     for ii, nt in enumerate(lnt):
         st.add_ref(key=f'nt{ii}', size=nt)
 
@@ -63,8 +65,13 @@ def _add_ref(st=None, nc=None, nx=None, lnt=None):
 def _add_data(st=None, nc=None, nx=None, lnt=None):
 
     x = np.linspace(1, 2, nx)
-    y = np.exp((x - 0.5)**2)
+    y = np.exp(-(x - 1.5)**2//0.2**2)
     y[-5] = np.nan
+
+    ne = np.logspace(15, 21, 11)
+    Te = np.logspace(1, 5, 21)
+    pec = np.exp(-(ne[:, None] - 1e18)**2/1e5**2 - (Te[None, :] - 5e3)**2/3e3**2)
+
     lt = [np.linspace(1, 10, nt) for nt in lnt]
     lprof = [(1 + np.cos(t)[:, None]) * x[None, :] for t in lt]
     lprof[0][10, -5] = np.nan
@@ -88,6 +95,34 @@ def _add_data(st=None, nc=None, nx=None, lnt=None):
         ref='nx',
     )
 
+    # ne, Te and pec
+    st.add_data(
+        key='ne',
+        data=ne,
+        dim='density',
+        quant='ne',
+        units='1/m3',
+        ref='nne',
+    )
+
+    st.add_data(
+        key='Te',
+        data=Te,
+        dim='temperature',
+        quant='Te',
+        units='eV',
+        ref='nTe',
+    )
+
+    st.add_data(
+        key='pec',
+        data=pec,
+        dim='pec',
+        quant='pec',
+        units='ph/s/sr',
+        ref=('nne', 'nTe'),
+    )
+
     for ii, nt in enumerate(lnt):
         st.add_data(
             key=f't{ii}',
@@ -139,6 +174,17 @@ def _add_data(st=None, nc=None, nx=None, lnt=None):
         ref=('nc', 'nt0', 'nx'),
     )
 
+    # add 4d array
+    st.add_data(
+        key='4d',
+        data=(
+            np.arange(nc)[:, None, None, None]
+            + lprof[0][None, :, :, None] * lt[1][None, None, None, :]
+        ),
+        dim='blabla',
+        ref=('nc', 'nt0', 'nx', 'nt1'),
+    )
+
 
 def _add_obj(st=None, nc=None):
     for ii in range(nc):
@@ -259,7 +305,6 @@ class Test02_Manipulate():
         self.st.show()
         self.st.show_data()
         self.st.show_obj()
-        self.st.show_interactive()
 
     # ------------------------
     #   Interpolate
@@ -327,7 +372,7 @@ class Test02_Manipulate():
                 safety_ratio=0.95,
                 returnas=True,
             )
-            
+
             if np.isscalar(ax):
                 ax = [ax]
 
@@ -474,17 +519,45 @@ class Test02_Manipulate():
     #   Plotting
     # ------------------------
 
-    def test12_plot_as_array(self):
+    def test12_plot_as_array_1d(self):
         dax = self.st.plot_as_array(key='t0')
+        plt.close('all')
+        del dax
+
+    def test13_plot_as_array_2d(self):
         dax = self.st.plot_as_array(key='prof0')
-        dax = self.st.plot_as_array(key='3d')
         plt.close('all')
+        del dax
+
+    def test14_plot_as_array_2d_log(self):
+        dax = self.st.plot_as_array(
+            key='pec', keyX='ne', keyY='Te',
+            dscale={'data': 'log'},
+        )
+        plt.close('all')
+        del dax
+
+    def test15_plot_as_array_3d(self):
+        dax = self.st.plot_as_array(key='3d', dvminmax={'keyX': {'min': 0}})
+        plt.close('all')
+        del dax
+
+    def test16_plot_as_array_3d_ZNonMonot(self):
+        dax = self.st.plot_as_array(key='3d', keyZ='y')
+        plt.close('all')
+        del dax
 
-    def test13_plot_BvsA_as_distribution(self):
-        dax = self.st.plot_BvsA_as_distribution(keyA='prof0', keyB='prof0-bis')
+    def test17_plot_as_array_4d(self):
+        dax = self.st.plot_as_array(key='4d', dscale={'keyU': 'linear'})
         plt.close('all')
+        del dax
+
+    # def test18_plot_BvsA_as_distribution(self):
+    #     dax = self.st.plot_BvsA_as_distribution(keyA='prof0', keyB='prof0-bis')
+    #     plt.close('all')
+    #     del dax
 
-    def test14_plot_as_profile1d(self):
+    def test19_plot_as_profile1d(self):
         dax = self.st.plot_as_profile1d(
             key='prof0',
             key_time='t0',
@@ -492,31 +565,33 @@ class Test02_Manipulate():
             bck='lines',
         )
         plt.close('all')
+        del dax
 
-    def test15_plot_as_mobile_lines(self):
+    # def test20_plot_as_mobile_lines(self):
 
-        # 3d
-        dax = self.st.plot_as_mobile_lines(
-            keyX='3d',
-            keyY='3d-bis',
-            key_time='t0',
-            key_chan='x',
-        )
+    #     # 3d
+    #     dax = self.st.plot_as_mobile_lines(
+    #         keyX='3d',
+    #         keyY='3d-bis',
+    #         key_time='t0',
+    #         key_chan='x',
+    #     )
 
-        # 2d
-        dax = self.st.plot_as_mobile_lines(
-            keyX='prof2',
-            keyY='prof2-bis',
-            key_chan='nx',
-        )
+    #     # 2d
+    #     dax = self.st.plot_as_mobile_lines(
+    #         keyX='prof2',
+    #         keyY='prof2-bis',
+    #         key_chan='nx',
+    #     )
 
-        plt.close('all')
+    #     plt.close('all')
+    #     del dax
 
     # ------------------------
     #   File handling
     # ------------------------
 
-    def test16_copy_equal(self):
+    def test21_copy_equal(self):
         st2 = self.st.copy()
         assert st2 is not self.st
 
@@ -524,14 +599,14 @@ class Test02_Manipulate():
         if msg is not True:
             raise Exception(msg)
 
-    def test17_get_nbytes(self):
+    def test22_get_nbytes(self):
         nb, dnb = self.st.get_nbytes()
 
-    def test18_saveload(self, verb=False):
+    def test23_saveload(self, verb=False):
         pfe = self.st.save(path=_PATH_OUTPUT, verb=verb, return_pfe=True)
         st2 = load(pfe, verb=verb)
         # Just to check the loaded version works fine
         msg = st2.__eq__(self.st, returnas=str)
         if msg is not True:
             raise Exception(msg)
-        os.remove(pfe)
+        os.remove(pfe)

datastock/version.py

@@ -1,2 +1,2 @@
 # Do not edit, pipeline versioning governed by git tags!
-__version__ = '0.0.35'
+__version__ = '0.0.37'

{datastock-0.0.35.dist-info → datastock-0.0.37.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: datastock
-Version: 0.0.35
+Version: 0.0.37
 Summary: A python library for generic class and data handling
 Home-page: https://github.com/ToFuProject/datastock
 Author: Didier VEZINET

datastock-0.0.37.dist-info/RECORD

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datastock-0.0.35.dist-info/RECORD

@@ -1,39 +0,0 @@
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