canns 0.13.1__py3-none-any.whl → 0.14.0__py3-none-any.whl

canns/pipeline/gallery/state.py

@@ -0,0 +1,51 @@
+"""State management for the model gallery TUI."""
+
+from __future__ import annotations
+
+from dataclasses import dataclass, field
+from pathlib import Path
+
+MODEL_ANALYSIS_OPTIONS: dict[str, list[tuple[str, str]]] = {
+    "cann1d": [
+        ("Connectivity Matrix", "connectivity"),
+        ("Energy Landscape", "energy"),
+        ("Tuning Curves", "tuning"),
+        ("Template Matching", "template"),
+        ("Neural Manifold", "manifold"),
+    ],
+    "cann2d": [
+        ("Connectivity Matrix", "connectivity"),
+        ("Energy Landscape", "energy"),
+        ("Firing Field", "firing_field"),
+        ("Trajectory Comparison", "trajectory"),
+        ("Neural Manifold", "manifold"),
+    ],
+    "gridcell": [
+        ("Connectivity Matrix", "connectivity"),
+        ("Energy Landscape", "energy"),
+        ("Firing Field", "firing_field"),
+        ("Path Integration", "path_integration"),
+        ("Neural Manifold", "manifold"),
+    ],
+}
+
+
+@dataclass
+class GalleryState:
+    """Centralized state for the model gallery TUI."""
+
+    workdir: Path = field(default_factory=lambda: Path("."))
+    model: str = "cann1d"
+    analysis: str = "connectivity"
+    artifacts: dict[str, Path] = field(default_factory=dict)
+
+
+def get_analysis_options(model: str) -> list[tuple[str, str]]:
+    """Return analysis options for the selected model."""
+    return MODEL_ANALYSIS_OPTIONS.get(model, [("Connectivity Matrix", "connectivity")])
+
+
+def get_default_analysis(model: str) -> str:
+    """Return the default analysis key for the selected model."""
+    options = get_analysis_options(model)
+    return options[0][1] if options else "connectivity"

canns/pipeline/gallery/styles.tcss

@@ -0,0 +1,123 @@
+/* Gallery TUI Styles */
+
+.hidden {
+    display: none;
+}
+
+#main-container {
+    layout: horizontal;
+    height: 1fr;
+}
+
+#left-panel {
+    width: 24;
+    min-width: 22;
+    max-width: 28;
+    height: 100%;
+    border-right: solid $primary;
+    padding: 1;
+}
+
+#middle-panel {
+    layout: vertical;
+    width: 1fr;
+    min-width: 30;
+    height: 100%;
+    border-right: solid $primary;
+    overflow: hidden;
+}
+
+#params-panel {
+    layout: vertical;
+    height: 100%;
+    width: 100%;
+    overflow: hidden;
+}
+
+#right-panel {
+    width: 2fr;
+    min-width: 32;
+    height: 100%;
+    padding: 1;
+}
+
+#params-header {
+    background: $boost;
+    padding: 1;
+    text-style: bold;
+    dock: top;
+    height: 3;
+}
+
+#params-scroll {
+    height: 1fr;
+    width: 100%;
+    overflow-y: scroll;
+    scrollbar-size-vertical: 1;
+    padding: 0 1 2 1;
+}
+
+#params-cann1d,
+#params-cann2d,
+#params-gridcell {
+    height: auto;
+    width: 100%;
+    overflow: auto;
+}
+
+ParamGroup {
+    border: round $secondary;
+    padding: 1;
+    margin: 1 0;
+    height: auto;
+    width: 100%;
+}
+
+.param-group-title {
+    text-style: bold;
+    color: $accent;
+    dock: top;
+}
+
+#workdir-label {
+    background: $boost;
+    padding: 1;
+    margin-bottom: 1;
+}
+
+Button {
+    margin: 1 0;
+}
+
+#progress-bar {
+    margin: 1 0;
+}
+
+#run-status {
+    margin-top: 1;
+}
+
+ImagePreview {
+    height: 3fr;
+    min-height: 20;
+    border: solid $accent;
+    padding: 1;
+}
+
+#log-viewer {
+    height: 1fr;
+    border: solid $primary;
+    padding: 1;
+}
+
+.running {
+    background: $warning;
+}
+
+.success {
+    background: $success;
+}
+
+.error {
+    background: $error;
+}

canns/pipeline/launcher.py

@@ -0,0 +1,81 @@
+"""Launcher for selecting ASA or Gallery TUI."""
+
+from __future__ import annotations
+
+import os
+
+from textual.app import App, ComposeResult
+from textual.binding import Binding
+from textual.containers import Container, Vertical
+from textual.widgets import Button, Label
+
+
+class ModePicker(App[str | None]):
+    """Select which TUI to run."""
+
+    TITLE = "CANNs TUI Launcher"
+
+    CSS = """
+    Screen {
+        align: center middle;
+    }
+
+    #card {
+        width: 68;
+        height: 18;
+        border: thick $accent;
+        background: $surface;
+        padding: 2;
+    }
+
+    #title {
+        text-style: bold;
+        margin-bottom: 1;
+    }
+
+    #subtitle {
+        color: $text-muted;
+        margin-bottom: 2;
+    }
+
+    Button {
+        width: 100%;
+        margin: 1 0;
+    }
+    """
+
+    BINDINGS = [
+        Binding("escape", "quit", "Quit"),
+    ]
+
+    def compose(self) -> ComposeResult:
+        with Container(id="card"):
+            yield Label("Choose a workflow", id="title")
+            yield Label("ASA analysis or Model Gallery", id="subtitle")
+            with Vertical():
+                yield Button("ASA (Attractor Structure Analyzer)", id="btn-asa", variant="primary")
+                yield Button("Model Gallery", id="btn-gallery", variant="primary")
+                yield Button("Quit", id="btn-quit")
+
+    def on_button_pressed(self, event: Button.Pressed) -> None:
+        if event.button.id == "btn-asa":
+            self.exit(result="asa")
+        elif event.button.id == "btn-gallery":
+            self.exit(result="gallery")
+        elif event.button.id == "btn-quit":
+            self.exit(result=None)
+
+
+def main() -> None:
+    """Entry point for the unified canns-tui launcher."""
+    os.environ.setdefault("MPLBACKEND", "Agg")
+
+    selection = ModePicker().run()
+    if selection == "gallery":
+        from .gallery import GalleryApp
+
+        GalleryApp().run()
+    elif selection == "asa":
+        from .asa import ASAApp
+
+        ASAApp().run()

{canns-0.13.1.dist-info → canns-0.14.0.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: canns
-Version: 0.13.1
+Version: 0.14.0
 Summary: A Python Library for Continuous Attractor Neural Networks
 Project-URL: Repository, https://github.com/routhleck/canns
 Author-email: Sichao He <sichaohe@outlook.com>
@@ -20,10 +20,15 @@ Requires-Dist: brainpy[cpu]
 Requires-Dist: canns-lib>=0.6.2
 Requires-Dist: climage>=0.2.2
 Requires-Dist: furo>=2025.7.19
+Requires-Dist: h5py>=3.7
+Requires-Dist: igraph>=1.0.0
 Requires-Dist: imageio[ffmpeg]>=2.37.0
+Requires-Dist: leidenalg>=0.11.0
+Requires-Dist: matplotlib>=3.5
 Requires-Dist: notebook>=7.4.4
 Requires-Dist: numba>=0.56.0
 Requires-Dist: numpy<2.3,>=1.24
+Requires-Dist: scikit-image>=0.19
 Requires-Dist: scipy>=1.9.0
 Requires-Dist: seaborn>=0.13.2
 Requires-Dist: textual>=7.3.0
@@ -34,6 +39,11 @@ Provides-Extra: cuda12
 Requires-Dist: brainpy[cuda12]; (platform_system == 'Linux') and extra == 'cuda12'
 Provides-Extra: cuda13
 Requires-Dist: brainpy[cuda13]; (platform_system == 'Linux') and extra == 'cuda13'
+Provides-Extra: gui
+Requires-Dist: imageio; extra == 'gui'
+Requires-Dist: pillow; extra == 'gui'
+Requires-Dist: pyside6>=6.6.0; extra == 'gui'
+Requires-Dist: qtawesome; extra == 'gui'
 Provides-Extra: tpu
 Requires-Dist: brainpy[tpu]; (platform_system == 'Linux') and extra == 'tpu'
 Description-Content-Type: text/markdown

canns-0.14.0.dist-info/RECORD

@@ -0,0 +1,163 @@
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+canns-0.14.0.dist-info/RECORD,,

canns-0.14.0.dist-info/entry_points.txt

@@ -0,0 +1,5 @@
+[console_scripts]
+canns = canns:master
+canns-gallery = canns.pipeline.gallery:main
+canns-gui = canns.pipeline.asa_gui:main
+canns-tui = canns.pipeline.launcher:main

canns/pipeline/_base.py

@@ -1,50 +0,0 @@
-from __future__ import annotations
-
-from abc import ABC, abstractmethod
-from pathlib import Path
-from typing import Any
-
-
-class Pipeline(ABC):
-    """Abstract base class for CANNs pipelines.
-
-    Pipelines orchestrate multi-step workflows (data preparation, model execution,
-    visualization, etc.). This base class standardizes how we manage results and
-    output directories so derived pipelines can focus on domain-specific logic.
-    """
-
-    def __init__(self) -> None:
-        self.results: dict[str, Any] | None = None
-        self.output_dir: Path | None = None
-
-    @abstractmethod
-    def run(self, *args: Any, **kwargs: Any) -> dict[str, Any]:
-        """Execute the pipeline and return a mapping of generated artifacts."""
-
-    def reset(self) -> None:
-        """Reset stored state so the pipeline can be executed again cleanly."""
-        self.results = None
-        self.output_dir = None
-
-    def prepare_output_dir(self, output_dir: str | Path, *, create: bool = True) -> Path:
-        """Validate and optionally create the output directory for derived pipelines."""
-        path = Path(output_dir)
-        if create:
-            path.mkdir(parents=True, exist_ok=True)
-        self.output_dir = path
-        return path
-
-    def set_results(self, results: dict[str, Any]) -> dict[str, Any]:
-        """Store pipeline results and return them for convenient chaining."""
-        self.results = results
-        return results
-
-    def get_results(self) -> dict[str, Any]:
-        """Return stored results or raise if the pipeline has not been executed."""
-        if self.results is None:
-            raise RuntimeError("Pipeline results are not available; call run() first.")
-        return self.results
-
-    def has_results(self) -> bool:
-        """Check whether the pipeline has already produced results."""
-        return self.results is not None

canns-0.13.1.dist-info/RECORD

@@ -1,89 +0,0 @@
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-canns-0.13.1.dist-info/RECORD,,

canns-0.13.1.dist-info/entry_points.txt

@@ -1,3 +0,0 @@
-[console_scripts]
-canns = canns:master
-canns-tui = canns.pipeline.asa:main