canns 0.13.1__py3-none-any.whl → 0.14.0__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (99) hide show
  1. canns/analyzer/data/__init__.py +5 -1
  2. canns/analyzer/data/asa/__init__.py +27 -12
  3. canns/analyzer/data/asa/cohospace.py +336 -10
  4. canns/analyzer/data/asa/config.py +3 -0
  5. canns/analyzer/data/asa/embedding.py +48 -45
  6. canns/analyzer/data/asa/path.py +104 -2
  7. canns/analyzer/data/asa/plotting.py +88 -19
  8. canns/analyzer/data/asa/tda.py +11 -4
  9. canns/analyzer/data/cell_classification/__init__.py +97 -0
  10. canns/analyzer/data/cell_classification/core/__init__.py +26 -0
  11. canns/analyzer/data/cell_classification/core/grid_cells.py +633 -0
  12. canns/analyzer/data/cell_classification/core/grid_modules_leiden.py +288 -0
  13. canns/analyzer/data/cell_classification/core/head_direction.py +347 -0
  14. canns/analyzer/data/cell_classification/core/spatial_analysis.py +431 -0
  15. canns/analyzer/data/cell_classification/io/__init__.py +5 -0
  16. canns/analyzer/data/cell_classification/io/matlab_loader.py +417 -0
  17. canns/analyzer/data/cell_classification/utils/__init__.py +39 -0
  18. canns/analyzer/data/cell_classification/utils/circular_stats.py +383 -0
  19. canns/analyzer/data/cell_classification/utils/correlation.py +318 -0
  20. canns/analyzer/data/cell_classification/utils/geometry.py +442 -0
  21. canns/analyzer/data/cell_classification/utils/image_processing.py +416 -0
  22. canns/analyzer/data/cell_classification/visualization/__init__.py +19 -0
  23. canns/analyzer/data/cell_classification/visualization/grid_plots.py +292 -0
  24. canns/analyzer/data/cell_classification/visualization/hd_plots.py +200 -0
  25. canns/analyzer/metrics/__init__.py +2 -1
  26. canns/analyzer/visualization/core/config.py +46 -4
  27. canns/data/__init__.py +6 -1
  28. canns/data/datasets.py +154 -1
  29. canns/data/loaders.py +37 -0
  30. canns/pipeline/__init__.py +13 -9
  31. canns/pipeline/__main__.py +6 -0
  32. canns/pipeline/asa/runner.py +105 -41
  33. canns/pipeline/asa_gui/__init__.py +68 -0
  34. canns/pipeline/asa_gui/__main__.py +6 -0
  35. canns/pipeline/asa_gui/analysis_modes/__init__.py +42 -0
  36. canns/pipeline/asa_gui/analysis_modes/base.py +39 -0
  37. canns/pipeline/asa_gui/analysis_modes/batch_mode.py +21 -0
  38. canns/pipeline/asa_gui/analysis_modes/cohomap_mode.py +56 -0
  39. canns/pipeline/asa_gui/analysis_modes/cohospace_mode.py +194 -0
  40. canns/pipeline/asa_gui/analysis_modes/decode_mode.py +52 -0
  41. canns/pipeline/asa_gui/analysis_modes/fr_mode.py +81 -0
  42. canns/pipeline/asa_gui/analysis_modes/frm_mode.py +92 -0
  43. canns/pipeline/asa_gui/analysis_modes/gridscore_mode.py +123 -0
  44. canns/pipeline/asa_gui/analysis_modes/pathcompare_mode.py +199 -0
  45. canns/pipeline/asa_gui/analysis_modes/tda_mode.py +112 -0
  46. canns/pipeline/asa_gui/app.py +29 -0
  47. canns/pipeline/asa_gui/controllers/__init__.py +6 -0
  48. canns/pipeline/asa_gui/controllers/analysis_controller.py +59 -0
  49. canns/pipeline/asa_gui/controllers/preprocess_controller.py +89 -0
  50. canns/pipeline/asa_gui/core/__init__.py +15 -0
  51. canns/pipeline/asa_gui/core/cache.py +14 -0
  52. canns/pipeline/asa_gui/core/runner.py +1936 -0
  53. canns/pipeline/asa_gui/core/state.py +324 -0
  54. canns/pipeline/asa_gui/core/worker.py +260 -0
  55. canns/pipeline/asa_gui/main_window.py +184 -0
  56. canns/pipeline/asa_gui/models/__init__.py +7 -0
  57. canns/pipeline/asa_gui/models/config.py +14 -0
  58. canns/pipeline/asa_gui/models/job.py +31 -0
  59. canns/pipeline/asa_gui/models/presets.py +21 -0
  60. canns/pipeline/asa_gui/resources/__init__.py +16 -0
  61. canns/pipeline/asa_gui/resources/dark.qss +167 -0
  62. canns/pipeline/asa_gui/resources/light.qss +163 -0
  63. canns/pipeline/asa_gui/resources/styles.qss +130 -0
  64. canns/pipeline/asa_gui/utils/__init__.py +1 -0
  65. canns/pipeline/asa_gui/utils/formatters.py +15 -0
  66. canns/pipeline/asa_gui/utils/io_adapters.py +40 -0
  67. canns/pipeline/asa_gui/utils/validators.py +41 -0
  68. canns/pipeline/asa_gui/views/__init__.py +1 -0
  69. canns/pipeline/asa_gui/views/help_content.py +171 -0
  70. canns/pipeline/asa_gui/views/pages/__init__.py +6 -0
  71. canns/pipeline/asa_gui/views/pages/analysis_page.py +565 -0
  72. canns/pipeline/asa_gui/views/pages/preprocess_page.py +492 -0
  73. canns/pipeline/asa_gui/views/panels/__init__.py +1 -0
  74. canns/pipeline/asa_gui/views/widgets/__init__.py +21 -0
  75. canns/pipeline/asa_gui/views/widgets/artifacts_tab.py +44 -0
  76. canns/pipeline/asa_gui/views/widgets/drop_zone.py +80 -0
  77. canns/pipeline/asa_gui/views/widgets/file_list.py +27 -0
  78. canns/pipeline/asa_gui/views/widgets/gridscore_tab.py +308 -0
  79. canns/pipeline/asa_gui/views/widgets/help_dialog.py +27 -0
  80. canns/pipeline/asa_gui/views/widgets/image_tab.py +50 -0
  81. canns/pipeline/asa_gui/views/widgets/image_viewer.py +97 -0
  82. canns/pipeline/asa_gui/views/widgets/log_box.py +16 -0
  83. canns/pipeline/asa_gui/views/widgets/pathcompare_tab.py +200 -0
  84. canns/pipeline/asa_gui/views/widgets/popup_combo.py +25 -0
  85. canns/pipeline/gallery/__init__.py +15 -5
  86. canns/pipeline/gallery/__main__.py +11 -0
  87. canns/pipeline/gallery/app.py +705 -0
  88. canns/pipeline/gallery/runner.py +790 -0
  89. canns/pipeline/gallery/state.py +51 -0
  90. canns/pipeline/gallery/styles.tcss +123 -0
  91. canns/pipeline/launcher.py +81 -0
  92. {canns-0.13.1.dist-info → canns-0.14.0.dist-info}/METADATA +11 -1
  93. canns-0.14.0.dist-info/RECORD +163 -0
  94. canns-0.14.0.dist-info/entry_points.txt +5 -0
  95. canns/pipeline/_base.py +0 -50
  96. canns-0.13.1.dist-info/RECORD +0 -89
  97. canns-0.13.1.dist-info/entry_points.txt +0 -3
  98. {canns-0.13.1.dist-info → canns-0.14.0.dist-info}/WHEEL +0 -0
  99. {canns-0.13.1.dist-info → canns-0.14.0.dist-info}/licenses/LICENSE +0 -0
@@ -0,0 +1,25 @@
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+ """ComboBox with popup sizing to avoid clipping."""
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+
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+ from __future__ import annotations
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+
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+ from PySide6.QtCore import Qt
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+ from PySide6.QtWidgets import QComboBox
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+
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+
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+ class PopupComboBox(QComboBox):
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+ def showPopup(self) -> None: # pragma: no cover - UI callback
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+ view = self.view()
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+ if view is not None:
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+ try:
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+ extra = 24
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+ hint = view.sizeHintForColumn(0)
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+ width = max(self.width(), int(hint) + extra)
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+ view.setMinimumWidth(width)
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+ container = view.window()
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+ if container is not None:
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+ flags = container.windowFlags()
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+ container.setWindowFlags(flags | Qt.Popup | Qt.WindowStaysOnTopHint)
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+ container.raise_()
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+ except Exception:
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+ pass
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+ super().showPopup()
@@ -1,7 +1,17 @@
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- """Gallery module for model demonstrations and examples.
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+ """Model gallery TUI."""
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2
 
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- This module will contain interactive TUI demos for CANN models and other
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- visualization examples in the future.
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- """
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+ import os
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4
 
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- __all__ = []
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+ __all__ = ["GalleryApp", "main"]
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+
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+
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+ def main() -> None:
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+ """Entry point for the model gallery TUI."""
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+ os.environ.setdefault("MPLBACKEND", "Agg")
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+ from .app import GalleryApp
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+
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+ app = GalleryApp()
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+ app.run()
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+
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+
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+ from .app import GalleryApp
@@ -0,0 +1,11 @@
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+ """Main entry point for running the gallery TUI as a module."""
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+
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+ import os
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+
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+ os.environ.setdefault("MPLBACKEND", "Agg")
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+
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+ from .app import GalleryApp
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+
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+ if __name__ == "__main__":
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+ app = GalleryApp()
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+ app.run()