brainstate 0.1.8__py2.py3-none-any.whl → 0.1.9__py2.py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- brainstate/__init__.py +58 -51
- brainstate/_compatible_import.py +148 -148
- brainstate/_state.py +1605 -1663
- brainstate/_state_test.py +52 -52
- brainstate/_utils.py +47 -47
- brainstate/augment/__init__.py +30 -30
- brainstate/augment/_autograd.py +778 -778
- brainstate/augment/_autograd_test.py +1289 -1289
- brainstate/augment/_eval_shape.py +99 -99
- brainstate/augment/_eval_shape_test.py +38 -38
- brainstate/augment/_mapping.py +1060 -1060
- brainstate/augment/_mapping_test.py +597 -597
- brainstate/augment/_random.py +151 -151
- brainstate/compile/__init__.py +38 -38
- brainstate/compile/_ad_checkpoint.py +204 -204
- brainstate/compile/_ad_checkpoint_test.py +49 -49
- brainstate/compile/_conditions.py +256 -256
- brainstate/compile/_conditions_test.py +220 -220
- brainstate/compile/_error_if.py +92 -92
- brainstate/compile/_error_if_test.py +52 -52
- brainstate/compile/_jit.py +346 -346
- brainstate/compile/_jit_test.py +143 -143
- brainstate/compile/_loop_collect_return.py +536 -536
- brainstate/compile/_loop_collect_return_test.py +58 -58
- brainstate/compile/_loop_no_collection.py +184 -184
- brainstate/compile/_loop_no_collection_test.py +50 -50
- brainstate/compile/_make_jaxpr.py +888 -888
- brainstate/compile/_make_jaxpr_test.py +156 -156
- brainstate/compile/_progress_bar.py +202 -202
- brainstate/compile/_unvmap.py +159 -159
- brainstate/compile/_util.py +147 -147
- brainstate/environ.py +563 -563
- brainstate/environ_test.py +62 -62
- brainstate/functional/__init__.py +27 -26
- brainstate/graph/__init__.py +29 -29
- brainstate/graph/_graph_node.py +244 -244
- brainstate/graph/_graph_node_test.py +73 -73
- brainstate/graph/_graph_operation.py +1738 -1738
- brainstate/graph/_graph_operation_test.py +563 -563
- brainstate/init/__init__.py +26 -26
- brainstate/init/_base.py +52 -52
- brainstate/init/_generic.py +244 -244
- brainstate/init/_random_inits.py +553 -553
- brainstate/init/_random_inits_test.py +149 -149
- brainstate/init/_regular_inits.py +105 -105
- brainstate/init/_regular_inits_test.py +50 -50
- brainstate/mixin.py +365 -363
- brainstate/mixin_test.py +77 -73
- brainstate/nn/__init__.py +135 -131
- brainstate/{functional → nn}/_activations.py +808 -813
- brainstate/{functional → nn}/_activations_test.py +331 -331
- brainstate/nn/_collective_ops.py +514 -514
- brainstate/nn/_collective_ops_test.py +43 -43
- brainstate/nn/_common.py +178 -178
- brainstate/nn/_conv.py +501 -501
- brainstate/nn/_conv_test.py +238 -238
- brainstate/nn/_delay.py +509 -502
- brainstate/nn/_delay_test.py +238 -184
- brainstate/nn/_dropout.py +426 -426
- brainstate/nn/_dropout_test.py +100 -100
- brainstate/nn/_dynamics.py +1343 -1343
- brainstate/nn/_dynamics_test.py +78 -78
- brainstate/nn/_elementwise.py +1119 -1119
- brainstate/nn/_elementwise_test.py +169 -169
- brainstate/nn/_embedding.py +58 -58
- brainstate/nn/_exp_euler.py +92 -92
- brainstate/nn/_exp_euler_test.py +35 -35
- brainstate/nn/_fixedprob.py +239 -239
- brainstate/nn/_fixedprob_test.py +114 -114
- brainstate/nn/_inputs.py +608 -608
- brainstate/nn/_linear.py +424 -424
- brainstate/nn/_linear_mv.py +83 -83
- brainstate/nn/_linear_mv_test.py +120 -120
- brainstate/nn/_linear_test.py +107 -107
- brainstate/nn/_ltp.py +28 -28
- brainstate/nn/_module.py +377 -377
- brainstate/nn/_module_test.py +40 -40
- brainstate/nn/_neuron.py +705 -705
- brainstate/nn/_neuron_test.py +161 -161
- brainstate/nn/_normalizations.py +975 -918
- brainstate/nn/_normalizations_test.py +73 -73
- brainstate/{functional → nn}/_others.py +46 -46
- brainstate/nn/_poolings.py +1177 -1177
- brainstate/nn/_poolings_test.py +217 -217
- brainstate/nn/_projection.py +486 -486
- brainstate/nn/_rate_rnns.py +554 -554
- brainstate/nn/_rate_rnns_test.py +63 -63
- brainstate/nn/_readout.py +209 -209
- brainstate/nn/_readout_test.py +53 -53
- brainstate/nn/_stp.py +236 -236
- brainstate/nn/_synapse.py +505 -505
- brainstate/nn/_synapse_test.py +131 -131
- brainstate/nn/_synaptic_projection.py +423 -423
- brainstate/nn/_synouts.py +162 -162
- brainstate/nn/_synouts_test.py +57 -57
- brainstate/nn/_utils.py +89 -89
- brainstate/nn/metrics.py +388 -388
- brainstate/optim/__init__.py +38 -38
- brainstate/optim/_base.py +64 -64
- brainstate/optim/_lr_scheduler.py +448 -448
- brainstate/optim/_lr_scheduler_test.py +50 -50
- brainstate/optim/_optax_optimizer.py +152 -152
- brainstate/optim/_optax_optimizer_test.py +53 -53
- brainstate/optim/_sgd_optimizer.py +1104 -1104
- brainstate/random/__init__.py +24 -24
- brainstate/random/_rand_funs.py +3616 -3616
- brainstate/random/_rand_funs_test.py +567 -567
- brainstate/random/_rand_seed.py +210 -210
- brainstate/random/_rand_seed_test.py +48 -48
- brainstate/random/_rand_state.py +1409 -1409
- brainstate/random/_random_for_unit.py +52 -52
- brainstate/surrogate.py +1957 -1957
- brainstate/transform.py +23 -23
- brainstate/typing.py +304 -304
- brainstate/util/__init__.py +50 -50
- brainstate/util/caller.py +98 -98
- brainstate/util/error.py +55 -55
- brainstate/util/filter.py +469 -469
- brainstate/util/others.py +540 -540
- brainstate/util/pretty_pytree.py +945 -945
- brainstate/util/pretty_pytree_test.py +159 -159
- brainstate/util/pretty_repr.py +328 -328
- brainstate/util/pretty_table.py +2954 -2954
- brainstate/util/scaling.py +258 -258
- brainstate/util/struct.py +523 -523
- {brainstate-0.1.8.dist-info → brainstate-0.1.9.dist-info}/METADATA +91 -99
- brainstate-0.1.9.dist-info/RECORD +130 -0
- {brainstate-0.1.8.dist-info → brainstate-0.1.9.dist-info}/WHEEL +1 -1
- {brainstate-0.1.8.dist-info → brainstate-0.1.9.dist-info/licenses}/LICENSE +202 -202
- brainstate/functional/_normalization.py +0 -81
- brainstate/functional/_spikes.py +0 -204
- brainstate-0.1.8.dist-info/RECORD +0 -132
- {brainstate-0.1.8.dist-info → brainstate-0.1.9.dist-info}/top_level.txt +0 -0
@@ -1,159 +1,159 @@
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# Copyright 2024 BDP Ecosystem Limited. All Rights Reserved.
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.
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# You may obtain a copy of the License at
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#
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# http://www.apache.org/licenses/LICENSE-2.0
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#
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# Unless required by applicable law or agreed to in writing, software
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# distributed under the License is distributed on an "AS IS" BASIS,
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# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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# See the License for the specific language governing permissions and
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# limitations under the License.
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# ==============================================================================
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import unittest
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import jax
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from absl.testing import absltest
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import brainstate
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class TestNestedMapping(absltest.TestCase):
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def test_create_state(self):
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state = brainstate.util.NestedDict({'a': brainstate.ParamState(1), 'b': {'c': brainstate.ParamState(2)}})
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assert state['a'].value == 1
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assert state['b']['c'].value == 2
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def test_get_attr(self):
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state = brainstate.util.NestedDict({'a': brainstate.ParamState(1), 'b': {'c': brainstate.ParamState(2)}})
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assert state.a.value == 1
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assert state.b['c'].value == 2
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def test_set_attr(self):
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state = brainstate.util.NestedDict({'a': brainstate.ParamState(1), 'b': {'c': brainstate.ParamState(2)}})
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state.a.value = 3
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state.b['c'].value = 4
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assert state['a'].value == 3
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assert state['b']['c'].value == 4
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def test_set_attr_variables(self):
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state = brainstate.util.NestedDict({'a': brainstate.ParamState(1), 'b': {'c': brainstate.ParamState(2)}})
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state.a.value = 3
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state.b['c'].value = 4
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assert isinstance(state.a, brainstate.ParamState)
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assert state.a.value == 3
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assert isinstance(state.b['c'], brainstate.ParamState)
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assert state.b['c'].value == 4
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def test_add_nested_attr(self):
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state = brainstate.util.NestedDict({'a': brainstate.ParamState(1), 'b': {'c': brainstate.ParamState(2)}})
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state.b['d'] = brainstate.ParamState(5)
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assert state['b']['d'].value == 5
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def test_delete_nested_attr(self):
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state = brainstate.util.NestedDict({'a': brainstate.ParamState(1), 'b': {'c': brainstate.ParamState(2)}})
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del state['b']['c']
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assert 'c' not in state['b']
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def test_integer_access(self):
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class Foo(brainstate.nn.Module):
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def __init__(self):
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super().__init__()
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self.layers = [brainstate.nn.Linear(1, 2), brainstate.nn.Linear(2, 3)]
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module = Foo()
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state_refs = brainstate.graph.treefy_states(module)
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assert module.layers[0].weight.value['weight'].shape == (1, 2)
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assert state_refs.layers[0]['weight'].value['weight'].shape == (1, 2)
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assert module.layers[1].weight.value['weight'].shape == (2, 3)
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assert state_refs.layers[1]['weight'].value['weight'].shape == (2, 3)
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def test_pure_dict(self):
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module = brainstate.nn.Linear(4, 5)
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state_map = brainstate.graph.treefy_states(module)
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pure_dict = state_map.to_pure_dict()
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assert isinstance(pure_dict, dict)
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assert isinstance(pure_dict['weight'].value['weight'], jax.Array)
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assert isinstance(pure_dict['weight'].value['bias'], jax.Array)
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class TestSplit(unittest.TestCase):
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def test_split(self):
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class Model(brainstate.nn.Module):
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def __init__(self):
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super().__init__()
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self.batchnorm = brainstate.nn.BatchNorm1d([10, 3])
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self.linear = brainstate.nn.Linear([10, 3], [10, 4])
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def __call__(self, x):
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return self.linear(self.batchnorm(x))
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with brainstate.environ.context(fit=True):
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model = Model()
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x = brainstate.random.randn(1, 10, 3)
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y = model(x)
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self.assertEqual(y.shape, (1, 10, 4))
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state_map = brainstate.graph.treefy_states(model)
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with self.assertRaises(ValueError):
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params, others = state_map.split(brainstate.ParamState)
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params, others = state_map.split(brainstate.ParamState, ...)
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print()
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print(params)
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print(others)
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self.assertTrue(len(params.to_flat()) == 2)
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self.assertTrue(len(others.to_flat()) == 2)
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class TestStateMap2(unittest.TestCase):
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def test1(self):
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class Model(brainstate.nn.Module):
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def __init__(self):
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super().__init__()
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self.batchnorm = brainstate.nn.BatchNorm1d([10, 3])
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self.linear = brainstate.nn.Linear([10, 3], [10, 4])
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def __call__(self, x):
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return self.linear(self.batchnorm(x))
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with brainstate.environ.context(fit=True):
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model = Model()
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state_map = brainstate.graph.treefy_states(model).to_flat()
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state_map = brainstate.util.NestedDict(state_map)
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class TestFlattedMapping(unittest.TestCase):
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def test1(self):
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class Model(brainstate.nn.Module):
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def __init__(self):
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super().__init__()
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self.batchnorm = brainstate.nn.BatchNorm1d([10, 3])
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self.linear = brainstate.nn.Linear([10, 3], [10, 4])
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def __call__(self, x):
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return self.linear(self.batchnorm(x))
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model = Model()
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# print(model.states())
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# print(brainstate.graph.states(model))
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self.assertTrue(model.states() == brainstate.graph.states(model))
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print(model.nodes())
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# print(brainstate.graph.nodes(model))
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self.assertTrue(model.nodes() == brainstate.graph.nodes(model))
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# Copyright 2024 BDP Ecosystem Limited. All Rights Reserved.
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.
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# You may obtain a copy of the License at
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#
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# http://www.apache.org/licenses/LICENSE-2.0
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#
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# Unless required by applicable law or agreed to in writing, software
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# distributed under the License is distributed on an "AS IS" BASIS,
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# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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# See the License for the specific language governing permissions and
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# limitations under the License.
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# ==============================================================================
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import unittest
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import jax
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from absl.testing import absltest
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import brainstate
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class TestNestedMapping(absltest.TestCase):
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def test_create_state(self):
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state = brainstate.util.NestedDict({'a': brainstate.ParamState(1), 'b': {'c': brainstate.ParamState(2)}})
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assert state['a'].value == 1
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assert state['b']['c'].value == 2
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def test_get_attr(self):
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state = brainstate.util.NestedDict({'a': brainstate.ParamState(1), 'b': {'c': brainstate.ParamState(2)}})
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assert state.a.value == 1
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assert state.b['c'].value == 2
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def test_set_attr(self):
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state = brainstate.util.NestedDict({'a': brainstate.ParamState(1), 'b': {'c': brainstate.ParamState(2)}})
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state.a.value = 3
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state.b['c'].value = 4
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assert state['a'].value == 3
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assert state['b']['c'].value == 4
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def test_set_attr_variables(self):
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state = brainstate.util.NestedDict({'a': brainstate.ParamState(1), 'b': {'c': brainstate.ParamState(2)}})
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state.a.value = 3
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state.b['c'].value = 4
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assert isinstance(state.a, brainstate.ParamState)
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assert state.a.value == 3
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assert isinstance(state.b['c'], brainstate.ParamState)
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assert state.b['c'].value == 4
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def test_add_nested_attr(self):
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state = brainstate.util.NestedDict({'a': brainstate.ParamState(1), 'b': {'c': brainstate.ParamState(2)}})
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state.b['d'] = brainstate.ParamState(5)
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assert state['b']['d'].value == 5
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def test_delete_nested_attr(self):
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state = brainstate.util.NestedDict({'a': brainstate.ParamState(1), 'b': {'c': brainstate.ParamState(2)}})
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del state['b']['c']
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assert 'c' not in state['b']
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def test_integer_access(self):
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class Foo(brainstate.nn.Module):
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def __init__(self):
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super().__init__()
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self.layers = [brainstate.nn.Linear(1, 2), brainstate.nn.Linear(2, 3)]
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module = Foo()
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state_refs = brainstate.graph.treefy_states(module)
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assert module.layers[0].weight.value['weight'].shape == (1, 2)
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assert state_refs.layers[0]['weight'].value['weight'].shape == (1, 2)
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assert module.layers[1].weight.value['weight'].shape == (2, 3)
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assert state_refs.layers[1]['weight'].value['weight'].shape == (2, 3)
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def test_pure_dict(self):
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module = brainstate.nn.Linear(4, 5)
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state_map = brainstate.graph.treefy_states(module)
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pure_dict = state_map.to_pure_dict()
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assert isinstance(pure_dict, dict)
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assert isinstance(pure_dict['weight'].value['weight'], jax.Array)
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assert isinstance(pure_dict['weight'].value['bias'], jax.Array)
|
91
|
+
|
92
|
+
|
93
|
+
class TestSplit(unittest.TestCase):
|
94
|
+
def test_split(self):
|
95
|
+
class Model(brainstate.nn.Module):
|
96
|
+
def __init__(self):
|
97
|
+
super().__init__()
|
98
|
+
self.batchnorm = brainstate.nn.BatchNorm1d([10, 3])
|
99
|
+
self.linear = brainstate.nn.Linear([10, 3], [10, 4])
|
100
|
+
|
101
|
+
def __call__(self, x):
|
102
|
+
return self.linear(self.batchnorm(x))
|
103
|
+
|
104
|
+
with brainstate.environ.context(fit=True):
|
105
|
+
model = Model()
|
106
|
+
x = brainstate.random.randn(1, 10, 3)
|
107
|
+
y = model(x)
|
108
|
+
self.assertEqual(y.shape, (1, 10, 4))
|
109
|
+
|
110
|
+
state_map = brainstate.graph.treefy_states(model)
|
111
|
+
|
112
|
+
with self.assertRaises(ValueError):
|
113
|
+
params, others = state_map.split(brainstate.ParamState)
|
114
|
+
|
115
|
+
params, others = state_map.split(brainstate.ParamState, ...)
|
116
|
+
print()
|
117
|
+
print(params)
|
118
|
+
print(others)
|
119
|
+
|
120
|
+
self.assertTrue(len(params.to_flat()) == 2)
|
121
|
+
self.assertTrue(len(others.to_flat()) == 2)
|
122
|
+
|
123
|
+
|
124
|
+
class TestStateMap2(unittest.TestCase):
|
125
|
+
def test1(self):
|
126
|
+
class Model(brainstate.nn.Module):
|
127
|
+
def __init__(self):
|
128
|
+
super().__init__()
|
129
|
+
self.batchnorm = brainstate.nn.BatchNorm1d([10, 3])
|
130
|
+
self.linear = brainstate.nn.Linear([10, 3], [10, 4])
|
131
|
+
|
132
|
+
def __call__(self, x):
|
133
|
+
return self.linear(self.batchnorm(x))
|
134
|
+
|
135
|
+
with brainstate.environ.context(fit=True):
|
136
|
+
model = Model()
|
137
|
+
state_map = brainstate.graph.treefy_states(model).to_flat()
|
138
|
+
state_map = brainstate.util.NestedDict(state_map)
|
139
|
+
|
140
|
+
|
141
|
+
class TestFlattedMapping(unittest.TestCase):
|
142
|
+
def test1(self):
|
143
|
+
class Model(brainstate.nn.Module):
|
144
|
+
def __init__(self):
|
145
|
+
super().__init__()
|
146
|
+
self.batchnorm = brainstate.nn.BatchNorm1d([10, 3])
|
147
|
+
self.linear = brainstate.nn.Linear([10, 3], [10, 4])
|
148
|
+
|
149
|
+
def __call__(self, x):
|
150
|
+
return self.linear(self.batchnorm(x))
|
151
|
+
|
152
|
+
model = Model()
|
153
|
+
# print(model.states())
|
154
|
+
# print(brainstate.graph.states(model))
|
155
|
+
self.assertTrue(model.states() == brainstate.graph.states(model))
|
156
|
+
|
157
|
+
print(model.nodes())
|
158
|
+
# print(brainstate.graph.nodes(model))
|
159
|
+
self.assertTrue(model.nodes() == brainstate.graph.nodes(model))
|