boris-behav-obs 9.7.15__py3-none-any.whl → 9.8.2__py3-none-any.whl

boris/export_events.py

@@ -1,7 +1,7 @@
 """
 BORIS
 Behavioral Observation Research Interactive Software
-Copyright 2012-2025 Olivier Friard
+Copyright 2012-2026 Olivier Friard
 
 This file is part of BORIS.
 
@@ -24,21 +24,15 @@ import datetime as dt
 import logging
 import math
 import os
-import tablib
 import pathlib as pl
 from decimal import Decimal as dec
 
-from . import observation_operations
-from . import utilities as util
-from . import config as cfg
-from . import select_observations
-from . import export_observation
-from . import select_subj_behav
-from . import project_functions
-from . import dialog
-from . import db_functions
+import tablib
+from PySide6.QtWidgets import QApplication, QFileDialog, QInputDialog, QMessageBox
 
-from PySide6.QtWidgets import QApplication, QFileDialog, QMessageBox, QInputDialog
+from . import config as cfg
+from . import db_functions, dialog, export_observation, observation_operations, project_functions, select_observations, select_subj_behav
+from . import utilities as util
 
 
 def export_events_as_behavioral_sequences(self, separated_subjects=False, timed=False):
@@ -116,8 +110,8 @@ def export_events_as_behavioral_sequences(self, separated_subjects=False, timed=
             None,
             cfg.programName,
             f"Error while exporting events as behavioral sequences:<br>{msg}",
-            QMessageBox.Ok | QMessageBox.Default,
-            QMessageBox.NoButton,
+            QMessageBox.StandardButton.Ok | QMessageBox.StandardButton.Default,
+            QMessageBox.StandardButton.NoButton,
         )
 
 
@@ -148,8 +142,8 @@ def export_tabular_events(self, mode: str = "tabular") -> None:
                 None,
                 cfg.programName,
                 ("This function is not available for observations with events that do not have timestamp"),
-                QMessageBox.Ok | QMessageBox.Default,
-                QMessageBox.NoButton,
+                QMessageBox.StandardButton.Ok | QMessageBox.StandardButton.Default,
+                QMessageBox.StandardButton.NoButton,
             )
             return
 
@@ -217,17 +211,14 @@ def export_tabular_events(self, mode: str = "tabular") -> None:
                 self,
                 "Choose a directory to export events",
                 os.path.expanduser("~"),
-                options=QFileDialog.ShowDirsOnly,
+                options=QFileDialog.Option.ShowDirsOnly,
             )
             if not exportDir:
                 return
 
         if len(selected_observations) == 1:
-            file_dialog_options = QFileDialog.Options()
-            file_dialog_options |= QFileDialog.DontConfirmOverwrite
-
-            file_name, filter_ = QFileDialog().getSaveFileName(
-                self, "Export events", "", ";;".join(available_formats), options=file_dialog_options
+            file_name, filter_ = QFileDialog.getSaveFileName(
+                self, "Export events", "", ";;".join(available_formats), options=QFileDialog.Option.DontConfirmOverwrite
             )
             if not file_name:
                 return
@@ -238,14 +229,14 @@ def export_tabular_events(self, mode: str = "tabular") -> None:
                 # check if file with new extension already exists
                 if pl.Path(file_name).exists():
                     if (
-                        dialog.MessageDialog(cfg.programName, f"The file {file_name} already exists.", [cfg.CANCEL, cfg.OVERWRITE])
+                        dialog.MessageDialog(cfg.programName, f"The file {file_name} already exists.", (cfg.CANCEL, cfg.OVERWRITE))
                         == cfg.CANCEL
                     ):
                         return
 
     if mode == "jwatcher":
         exportDir = QFileDialog().getExistingDirectory(
-            self, "Choose a directory to export events", os.path.expanduser("~"), options=QFileDialog.ShowDirsOnly
+            self, "Choose a directory to export events", os.path.expanduser("~"), options=QFileDialog.Option.ShowDirsOnly
         )
         if not exportDir:
             return
@@ -263,7 +254,7 @@ def export_tabular_events(self, mode: str = "tabular") -> None:
                 mem_command = dialog.MessageDialog(
                     cfg.programName,
                     f"The file {file_name} already exists.",
-                    [cfg.OVERWRITE, cfg.OVERWRITE_ALL, cfg.SKIP, cfg.SKIP_ALL, cfg.CANCEL],
+                    (cfg.OVERWRITE, cfg.OVERWRITE_ALL, cfg.SKIP, cfg.SKIP_ALL, cfg.CANCEL),
                 )
                 if mem_command == cfg.CANCEL:
                     return
@@ -287,7 +278,13 @@ def export_tabular_events(self, mode: str = "tabular") -> None:
             )
 
         if not r and msg:
-            QMessageBox.critical(None, cfg.programName, msg, QMessageBox.Ok | QMessageBox.Default, QMessageBox.NoButton)
+            QMessageBox.critical(
+                None,
+                cfg.programName,
+                msg,
+                QMessageBox.StandardButton.Ok | QMessageBox.StandardButton.Default,
+                QMessageBox.StandardButton.NoButton,
+            )
 
 
 def export_aggregated_events(self):
@@ -397,7 +394,7 @@ def export_aggregated_events(self):
     flag_group = True
     if len(selected_observations) > 1:
         flag_group = (
-            dialog.MessageDialog(cfg.programName, "Group events from selected observations in one file?", [cfg.YES, cfg.NO]) == cfg.YES
+            dialog.MessageDialog(cfg.programName, "Group events from selected observations in one file?", (cfg.YES, cfg.NO)) == cfg.YES
         )
 
     if flag_group:
@@ -415,11 +412,8 @@ def export_aggregated_events(self):
             cfg.RDS,
         )
 
-        file_dialog_options = QFileDialog.Options()
-        file_dialog_options |= QFileDialog.DontConfirmOverwrite
-
-        fileName, filter_ = QFileDialog().getSaveFileName(
-            self, "Export aggregated events", "", ";;".join(file_formats), options=file_dialog_options
+        fileName, filter_ = QFileDialog.getSaveFileName(
+            self, "Export aggregated events", "", ";;".join(file_formats), options=QFileDialog.Option.DontConfirmOverwrite
         )
 
         if not fileName:
@@ -430,7 +424,7 @@ def export_aggregated_events(self):
             # check if file with new extension already exists
             fileName = str(pl.Path(fileName)) + "." + outputFormat
             if pl.Path(fileName).exists():
-                if dialog.MessageDialog(cfg.programName, f"The file {fileName} already exists.", [cfg.CANCEL, cfg.OVERWRITE]) == cfg.CANCEL:
+                if dialog.MessageDialog(cfg.programName, f"The file {fileName} already exists.", (cfg.CANCEL, cfg.OVERWRITE)) == cfg.CANCEL:
                     return
 
     else:  # not grouping
@@ -453,7 +447,7 @@ def export_aggregated_events(self):
         outputFormat = cfg.FILE_NAME_SUFFIX[item]
 
         exportDir = QFileDialog().getExistingDirectory(
-            self, "Choose a directory to export events", os.path.expanduser("~"), options=QFileDialog.ShowDirsOnly
+            self, "Choose a directory to export events", os.path.expanduser("~"), options=QFileDialog.Option.ShowDirsOnly
         )
         if not exportDir:
             return
@@ -471,8 +465,8 @@ def export_aggregated_events(self):
                 None,
                 cfg.programName,
                 f"The file {fileName} can not be saved",
-                QMessageBox.Ok | QMessageBox.Default,
-                QMessageBox.NoButton,
+                QMessageBox.StandardButton.Ok | QMessageBox.StandardButton.Default,
+                QMessageBox.StandardButton.NoButton,
             )
 
         return
@@ -530,7 +524,7 @@ def export_aggregated_events(self):
                 mem_command = dialog.MessageDialog(
                     cfg.programName,
                     f"The file {fileName} already exists.",
-                    [cfg.OVERWRITE, cfg.OVERWRITE_ALL, cfg.SKIP, cfg.SKIP_ALL, cfg.CANCEL],
+                    (cfg.OVERWRITE, cfg.OVERWRITE_ALL, cfg.SKIP, cfg.SKIP_ALL, cfg.CANCEL),
                 )
                 if mem_command == cfg.CANCEL:
                     return
@@ -539,7 +533,13 @@ def export_aggregated_events(self):
 
             r, msg = export_observation.dataset_write(data_single_obs_sorted, fileName, outputFormat, dtype=fields_type(max_modifiers))
             if not r:
-                QMessageBox.warning(None, cfg.programName, msg, QMessageBox.Ok | QMessageBox.Default, QMessageBox.NoButton)
+                QMessageBox.warning(
+                    None,
+                    cfg.programName,
+                    msg,
+                    QMessageBox.StandardButton.Ok | QMessageBox.StandardButton.Default,
+                    QMessageBox.StandardButton.NoButton,
+                )
 
         """
         # disabled after introduction of the force_number_modifiers parameter in export_aggregated_events function
@@ -635,7 +635,13 @@ def export_aggregated_events(self):
     if flag_group:
         r, msg = export_observation.dataset_write(data_grouped_obs_all, fileName, outputFormat, dtype=fields_type(max_modifiers))
         if not r:
-            QMessageBox.warning(None, cfg.programName, msg, QMessageBox.Ok | QMessageBox.Default, QMessageBox.NoButton)
+            QMessageBox.warning(
+                None,
+                cfg.programName,
+                msg,
+                QMessageBox.StandardButton.Ok | QMessageBox.StandardButton.Default,
+                QMessageBox.StandardButton.NoButton,
+            )
 
 
 def export_events_as_textgrid(self) -> None:
@@ -667,8 +673,8 @@ def export_events_as_textgrid(self) -> None:
             None,
             cfg.programName,
             ("This function is not available for observations with events that do not have timestamp"),
-            QMessageBox.Ok | QMessageBox.Default,
-            QMessageBox.NoButton,
+            QMessageBox.StandardButton.Ok | QMessageBox.StandardButton.Default,
+            QMessageBox.StandardButton.NoButton,
         )
         return
 
@@ -697,7 +703,7 @@ def export_events_as_textgrid(self) -> None:
         return
 
     export_dir = QFileDialog.getExistingDirectory(
-        self, "Export events as Praat TextGrid", os.path.expanduser("~"), options=QFileDialog.ShowDirsOnly
+        self, "Export events as Praat TextGrid", os.path.expanduser("~"), options=QFileDialog.Option.ShowDirsOnly
     )
     if not export_dir:
         return
@@ -985,7 +991,7 @@ def export_events_as_textgrid(self) -> None:
             mem_command = dialog.MessageDialog(
                 cfg.programName,
                 f"The file <b>{pl.Path(export_dir) / util.safeFileName(obs_id)}.TextGrid</b> already exists.",
-                [cfg.OVERWRITE, cfg.OVERWRITE_ALL, cfg.SKIP, cfg.SKIP_ALL, cfg.CANCEL],
+                (cfg.OVERWRITE, cfg.OVERWRITE_ALL, cfg.SKIP, cfg.SKIP_ALL, cfg.CANCEL),
             )
             if mem_command == cfg.CANCEL:
                 return

boris/export_observation.py

@@ -1,7 +1,7 @@
 """
 BORIS
 Behavioral Observation Research Interactive Software
-Copyright 2012-2025 Olivier Friard
+Copyright 2012-2026 Olivier Friard
 
   This program is free software; you can redistribute it and/or modify
   it under the terms of the GNU General Public License as published by

boris/external_processes.py

@@ -1,7 +1,7 @@
 """
 BORIS
 Behavioral Observation Research Interactive Software
-Copyright 2012-2025 Olivier Friard
+Copyright 2012-2026 Olivier Friard
 
 This file is part of BORIS.
 

boris/geometric_measurement.py

@@ -1,7 +1,7 @@
 """
 BORIS
 Behavioral Observation Research Interactive Software
-Copyright 2012-2025 Olivier Friard
+Copyright 2012-2026 Olivier Friard
 
 This file is part of BORIS.
 

boris/gui_utilities.py

@@ -1,7 +1,7 @@
 """
 BORIS
 Behavioral Observation Research Interactive Software
-Copyright 2012-2025 Olivier Friard
+Copyright 2012-2026 Olivier Friard
 
   This program is free software; you can redistribute it and/or modify
   it under the terms of the GNU General Public License as published by

boris/image_overlay.py

@@ -1,7 +1,7 @@
 """
 BORIS
 Behavioral Observation Research Interactive Software
-Copyright 2012-2025 Olivier Friard
+Copyright 2012-2026 Olivier Friard
 
 
   This program is free software; you can redistribute it and/or modify

boris/import_observations.py

@@ -1,7 +1,7 @@
 """
 BORIS
 Behavioral Observation Research Interactive Software
-Copyright 2012-2025 Olivier Friard
+Copyright 2012-2026 Olivier Friard
 
   This program is free software; you can redistribute it and/or modify
   it under the terms of the GNU General Public License as published by

boris/ipc_mpv.py

@@ -1,7 +1,7 @@
 """
 BORIS
 Behavioral Observation Research Interactive Software
-Copyright 2012-2025 Olivier Friard
+Copyright 2012-2026 Olivier Friard
 
 This file is part of BORIS.
 

boris/irr.py

@@ -1,7 +1,7 @@
 """
 BORIS
 Behavioral Observation Research Interactive Software
-Copyright 2012-2025 Olivier Friard
+Copyright 2012-2026 Olivier Friard
 
 
   This program is free software; you can redistribute it and/or modify

boris/latency.py

@@ -1,7 +1,7 @@
 """
 BORIS
 Behavioral Observation Research Interactive Software
-Copyright 2012-2025 Olivier Friard
+Copyright 2012-2026 Olivier Friard
 
   This program is free software; you can redistribute it and/or modify
   it under the terms of the GNU General Public License as published by

boris/measurement_widget.py

@@ -1,7 +1,7 @@
 """
 BORIS
 Behavioral Observation Research Interactive Software
-Copyright 2012-2025 Olivier Friard
+Copyright 2012-2026 Olivier Friard
 
 This file is part of BORIS.
 

boris/media_file.py

@@ -1,7 +1,7 @@
 """
 BORIS
 Behavioral Observation Research Interactive Software
-Copyright 2012-2025 Olivier Friard
+Copyright 2012-2026 Olivier Friard
 
 This file is part of BORIS.
 

boris/menu_options.py

@@ -1,28 +1,31 @@
 """
 BORIS
 Behavioral Observation Research Interactive Software
-Copyright 2012-2025 Olivier Friard
+Copyright 2012-2026 Olivier Friard
 
-  This program is free software; you can redistribute it and/or modify
+This file is part of BORIS.
+
+  BORIS is free software; you can redistribute it and/or modify
   it under the terms of the GNU General Public License as published by
-  the Free Software Foundation; either version 2 of the License, or
-  (at your option) any later version.
+  the Free Software Foundation; either version 3 of the License, or
+  any later version.
 
-  This program is distributed in the hope that it will be useful,
+  BORIS is distributed in the hope that it will be useful,
   but WITHOUT ANY WARRANTY; without even the implied warranty of
   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
   GNU General Public License for more details.
 
   You should have received a copy of the GNU General Public License
-  along with this program; if not, write to the Free Software
-  Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston,
-  MA 02110-1301, USA.
+  along with this program; if not see <http://www.gnu.org/licenses/>.
+
 """
 
 import logging
-from . import config as cfg
+
 from PySide6.QtCore import QSize
 
+from . import config as cfg
+
 
 def update_windows_title(self):
     """
@@ -35,10 +38,9 @@ def update_windows_title(self):
         if self.pj[cfg.PROJECT_NAME]:
             project_name = self.pj[cfg.PROJECT_NAME]
         else:
+            project_name = "Unnamed project"
             if self.projectFileName:
-                project_name = f"Unnamed project ({self.projectFileName})"
-            else:
-                project_name = "Unnamed project"
+                project_name += f" ({self.projectFileName})"
 
     self.setWindowTitle(
         f"{self.observationId + ' - ' * (self.observationId != '')}{project_name}{'*' * self.projectChanged}{(' - ' * (project_name != ''))}{cfg.programName}"

boris/modifier_coding_map_creator.py

@@ -1,7 +1,7 @@
 """
 BORIS
 Behavioral Observation Research Interactive Software
-Copyright 2012-2025 Olivier Friard
+Copyright 2012-2026 Olivier Friard
 
 This file is part of BORIS.
 

boris/modifiers_coding_map.py

@@ -1,7 +1,7 @@
 """
 BORIS
 Behavioral Observation Research Interactive Software
-Copyright 2012-2025 Olivier Friard
+Copyright 2012-2026 Olivier Friard
 
 This file is part of BORIS.
 

boris/observation.py

@@ -1,7 +1,7 @@
 """
 BORIS
 Behavioral Observation Research Interactive Software
-Copyright 2012-2025 Olivier Friard
+Copyright 2012-2026 Olivier Friard
 
 This file is part of BORIS.
 
@@ -22,33 +22,32 @@ This file is part of BORIS.
 
 import logging
 import os
-import pandas as pd
 import pathlib as pl
 
+import pandas as pd
 from PySide6.QtCore import Qt
 from PySide6.QtGui import QColor
 from PySide6.QtWidgets import (
+    QApplication,
+    QComboBox,
     QDialog,
-    QVBoxLayout,
+    QFileDialog,
     QHBoxLayout,
+    QHeaderView,
     QLabel,
-    QComboBox,
-    QPushButton,
+    QListWidgetItem,
+    QMenu,
     QMessageBox,
-    QSpacerItem,
+    QPushButton,
     QSizePolicy,
-    QFileDialog,
+    QSpacerItem,
     QTableWidgetItem,
-    QApplication,
-    QMenu,
-    QListWidgetItem,
-    QHeaderView,
+    QVBoxLayout,
 )
 
 from . import config as cfg
-from . import dialog, plot_data_module, project_functions
+from . import dialog, gui_utilities, plot_data_module, project_functions
 from . import utilities as util
-from . import gui_utilities
 from .observation_ui import Ui_Form
 
 
@@ -1266,7 +1265,7 @@ class Observation(QDialog, Ui_Form):
                 file_path = str(pl.Path(file_path).relative_to(pl.Path(self.project_path).parent))
 
             self.mediaDurations[file_path] = float(media_info["duration"])
-        elif media_info["has_video"] is False and media_info["audio_duration"]:
+        elif media_info["has_video"] is False and media_info["audio_duration"] and media_info["audio_duration"] != "NA":
             self.mediaDurations[file_path] = float(media_info["audio_duration"])
         else:
             return (True, "Media duration not available")

boris/observation_operations.py

@@ -1,7 +1,7 @@
 """
 BORIS
 Behavioral Observation Research Interactive Software
-Copyright 2012-2025 Olivier Friard
+Copyright 2012-2026 Olivier Friard
 
   This program is free software; you can redistribute it and/or modify
   it under the terms of the GNU General Public License as published by

boris/observations_list.py

@@ -1,7 +1,7 @@
 """
 BORIS
 Behavioral Observation Research Interactive Software
-Copyright 2012-2025 Olivier Friard
+Copyright 2012-2026 Olivier Friard
 
 
   This program is free software; you can redistribute it and/or modify

boris/otx_parser.py

@@ -1,7 +1,7 @@
 """
 BORIS
 Behavioral Observation Research Interactive Software
-Copyright 2012-2025 Olivier Friard
+Copyright 2012-2026 Olivier Friard
 
 This file is part of BORIS.
 

boris/param_panel.py

@@ -1,7 +1,7 @@
 """
 BORIS
 Behavioral Observation Research Interactive Software
-Copyright 2012-2025 Olivier Friard
+Copyright 2012-2026 Olivier Friard
 
 This file is part of BORIS.
 

boris/player_dock_widget.py

@@ -1,7 +1,7 @@
 """
 BORIS
 Behavioral Observation Research Interactive Software
-Copyright 2012-2025 Olivier Friard
+Copyright 2012-2026 Olivier Friard
 
 This file is part of BORIS.
 

boris/plot_data_module.py

@@ -1,7 +1,7 @@
 """
 BORIS
 Behavioral Observation Research Interactive Software
-Copyright 2012-2025 Olivier Friard
+Copyright 2012-2026 Olivier Friard
 
 
   This program is free software; you can redistribute it and/or modify

boris/plot_events.py

@@ -1,7 +1,7 @@
 """
 BORIS
 Behavioral Observation Research Interactive Software
-Copyright 2012-2025 Olivier Friard
+Copyright 2012-2026 Olivier Friard
 
 This file is part of BORIS.
 

boris/plot_events_rt.py

@@ -1,7 +1,7 @@
 """
 BORIS
 Behavioral Observation Research Interactive Software
-Copyright 2012-2025 Olivier Friard
+Copyright 2012-2026 Olivier Friard
 
 This file is part of BORIS.
 

boris/plot_spectrogram_rt.py

@@ -1,7 +1,7 @@
 """
 BORIS
 Behavioral Observation Research Interactive Software
-Copyright 2012-2025 Olivier Friard
+Copyright 2012-2026 Olivier Friard
 
 
   This program is free software; you can redistribute it and/or modify
@@ -199,7 +199,7 @@ class Plot_spectrogram_RT(QWidget):
                 window = matplotlib.mlab.window_hanning
 
             if window_type == "hamming":
-                window = signal.get_window(window_type, nfft)  
+                window = signal.get_window(window_type, nfft)
 
             if window_type == "blackmanharris":
                 window = signal.get_window(window_type, nfft)

boris/plot_waveform_rt.py

@@ -1,7 +1,7 @@
 """
 BORIS
 Behavioral Observation Research Interactive Software
-Copyright 2012-2025 Olivier Friard
+Copyright 2012-2026 Olivier Friard
 
 
   This program is free software; you can redistribute it and/or modify

boris/plugins.py

@@ -1,7 +1,7 @@
 """
 BORIS
 Behavioral Observation Research Interactive Software
-Copyright 2012-2025 Olivier Friard
+Copyright 2012-2026 Olivier Friard
 
   This program is free software; you can redistribute it and/or modify
   it under the terms of the GNU General Public License as published by

boris/preferences.py

@@ -1,7 +1,7 @@
 """
 BORIS
 Behavioral Observation Research Interactive Software
-Copyright 2012-2025 Olivier Friard
+Copyright 2012-2026 Olivier Friard
 
 This file is part of BORIS.
 

boris/project.py

@@ -1,7 +1,7 @@
 """
 BORIS
 Behavioral Observation Research Interactive Software
-Copyright 2012-2025 Olivier Friard
+Copyright 2012-2026 Olivier Friard
 
 This file is part of BORIS.